# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dtdA 303 4.53e-17 1aye c.56.5.1 33823 1m4lA 307 3.03e-16 c.56.5.1 78604 1c0pA 363 4.37e-06 1an9A c.4.1.2,d.16.1.3 30647,37934 1d3cA 686 6.62e-06 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1ht6A 405 3.77e-05 b.71.1.1,c.1.8.1 83629,83630 2blnA 305 4.92e-05 1rtqA 299 1.23e-04 c.56.5.4 97819 1ewkA 490 1.77e-04 1ewkA c.93.1.1 35712 1lqtA 456 1.79e-04 c.3.1.1,c.4.1.1 74198,74199 1qhoA 686 1.92e-04 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1el5A 389 2.02e-04 1b3mA c.3.1.2,d.16.1.3 30369,37937 1orrA 347 2.29e-04 c.2.1.2 93460 1i24A 404 2.36e-04 c.2.1.2 83663 1n2eA 300 2.52e-04 c.26.1.4 85268 1q74A 303 2.72e-04 c.134.1.1 96019 1jtvA 327 3.22e-04 c.2.1.2 84230 1hdoA 206 3.52e-04 1he2A c.2.1.2 60965 1jkxA 212 4.17e-04 c.65.1.1 66813 1kjqA 391 4.29e-04 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1qwnA 1045 5.24e-04 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1tjyA 316 6.69e-04 c.93.1.1 107062 1fmtA 314 7.64e-04 1fmtA b.46.1.1,c.65.1.1 25758,34174 1nofA 383 1.06e-03 b.71.1.2,c.1.8.3 92020,92021 1fmcA 255 1.27e-03 1cydA c.2.1.2 29856 1xq6A 253 1.31e-03 1bif 469 1.39e-03 1bif c.37.1.7,c.60.1.4 31961,34003 1ek6A 348 1.49e-03 1xel c.2.1.2 29800 1rwhA 757 1.52e-03 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1g94A 448 1.65e-03 b.71.1.1,c.1.8.1 65169,65170 1ryiA 382 1.70e-03 1hp1A 516 1.73e-03 d.114.1.1,d.159.1.2 70976,70977 1gtkA 313 1.85e-03 c.94.1.1,d.50.2.1 76346,76347 1oxxK 353 2.02e-03 b.40.6.3,c.37.1.12 93715,93716 1ve2A 235 2.08e-03 1eny 268 2.13e-03 1eny c.2.1.2 29910 1qq9A 284 2.25e-03 1xjo c.56.5.4 33841 1n7hA 381 2.36e-03 c.2.1.2 80250 1cvrA 435 2.57e-03 1cvrA b.1.18.12,c.17.1.2 21949,31006 1pj5A 830 2.82e-03 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1g8lA 411 2.90e-03 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1oaa 259 2.91e-03 1oaa c.2.1.2 29829 1h09A 338 3.00e-03 b.109.1.1,c.1.8.8 83420,83421 1h5qA 265 3.20e-03 1cydA c.2.1.2 60643 1f0yA 302 3.21e-03 2hdhA a.100.1.3,c.2.1.6 18793,30197 1vjpA 394 3.22e-03 c.2.1.3,d.81.1.3 100828,100829 1kicA 339 3.40e-03 c.70.1.1 72510 1pwxA 254 3.42e-03 c.2.1.2 95262 1ca1 370 3.47e-03 1ca1 a.124.1.1,b.12.1.3 19340,23648 1r6dA 337 3.62e-03 c.2.1.2 97148 1ooeA 236 3.79e-03 c.2.1.2 87196 1vjvA 415 3.87e-03 d.3.1.9 108632 1f60A 458 4.07e-03 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1d7oA 297 4.23e-03 1enp c.2.1.2 29907 1a2zA 220 4.34e-03 1a2zA c.56.4.1 33794 1kwgA 645 4.46e-03 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1nvmB 312 4.71e-03 c.2.1.3,d.81.1.1 86251,86252 1gjwA 637 4.91e-03 b.71.1.1,c.1.8.1 60582,60583 1xk7A 408 5.07e-03 1bd0A 388 5.35e-03 1bd0A b.49.2.2,c.1.6.1 26480,28642 1e9rA 437 5.61e-03 c.37.1.11 64827 1eyeA 280 5.75e-03 1aj2 c.1.21.1 29672 1vknA 351 6.47e-03 c.2.1.3,d.81.1.1 108676,108677 1cs0A 1073 6.50e-03 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1pe1A 267 6.64e-03 c.1.10.4 94591 1p5dX 463 7.39e-03 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1sbyA 254 7.57e-03 1t2dA 322 7.67e-03 c.2.1.5,d.162.1.1 99084,99085 1bouB 302 7.75e-03 1bouB c.56.6.1 33859 1xm3A 264 7.79e-03 1goiA 499 7.89e-03 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1dcs 311 8.20e-03 1dcs b.82.2.1 28124 1bdmA 327 8.40e-03 1bmdA c.2.1.5,d.162.1.1 30137,42104 1w96A 554 9.02e-03 1e6wA 260 9.46e-03 1e6wA c.2.1.2 59326 1hdcA 253 9.46e-03 1e6wA c.2.1.2 29862 1t4bA 367 9.58e-03 c.2.1.3,d.81.1.1 106406,106407 1x74A 360 1.04e-02 1r7aA 504 1.09e-02 b.71.1.1,c.1.8.1 97192,97193 1q7eA 428 1.11e-02 c.123.1.1 96035 1jixA 351 1.12e-02 1c3jA c.87.1.1 63081 1gesA 450 1.17e-02 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1ej0A 180 1.22e-02 1ej0A c.66.1.2 34179 1fcdA 401 1.24e-02 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1uasA 362 1.41e-02 b.71.1.1,c.1.8.1 88388,88389 1ja9A 274 1.46e-02 c.2.1.2 62817 1ehiA 377 1.56e-02 1iow c.30.1.2,d.142.1.1 31716,41484 1t0bA 252 1.64e-02 c.23.16.6 106199 1dp4A 435 1.68e-02 1dp4A c.93.1.1 35710 1gy8A 397 1.72e-02 c.2.1.2 83376 1x9iA 302 1.73e-02 1h3fA 432 1.77e-02 c.26.1.1,d.66.1.4 76631,76632 1g7sA 594 1.79e-02 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1hx0A 496 1.80e-02 b.71.1.1,c.1.8.1 61346,61347 1g291 372 1.84e-02 1g291 1xgkA 352 1.89e-02 1cp2A 269 1.96e-02 1cp2A c.37.1.10 32269 1cjcA 460 1.97e-02 1cjcA c.3.1.1,c.4.1.1 30319,30604 1w4xA 542 2.07e-02 c.3.1.5,c.3.1.5 109171,109172 1e3dA 266 2.08e-02 2frvA e.19.1.1 59188 1brwA 433 2.16e-02 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1byi 224 2.24e-02 1byi c.37.1.10 32199 1wvgA 359 2.29e-02 1uteA 313 2.30e-02 1uteA d.159.1.1 42078 1usgA 346 2.39e-02 c.93.1.1 99864 1gsoA 431 2.41e-02 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1h7eA 245 2.42e-02 c.68.1.13 60717 1djxA 624 2.43e-02 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1ad1A 266 2.44e-02 1aj2 c.1.21.1 29668 1cydA 244 2.48e-02 1cydA c.2.1.2 29825 1fl2A 310 2.51e-02 1hyuA c.3.1.5,c.3.1.5 59869,59870 1cb8A 678 2.56e-02 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1n7oA 721 2.67e-02 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1evyA 366 2.68e-02 1evyA a.100.1.6,c.2.1.6 18811,30215 1w99A 558 2.74e-02 1o98A 511 2.87e-02 c.105.1.1,c.76.1.3 86684,86685 1dv1A 449 2.89e-02 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1fecA 490 2.90e-02 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1xg5A 279 2.92e-02 1gegA 256 3.16e-02 1ybvA c.2.1.2 29888 1s3eA 520 3.39e-02 c.3.1.2,d.16.1.5 98426,98427 1vhnA 318 3.40e-02 c.1.4.1 100693 1ej2A 181 3.45e-02 1f9aA c.26.1.3 59414 1r89A 437 3.76e-02 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1fuiA 591 3.91e-02 1fuiA b.43.2.1,c.85.1.1 25674,35444 1k7iA 479 3.92e-02 b.80.7.1,d.92.1.6 77281,77282 1p4cA 380 4.18e-02 c.1.4.1 94100 1bli 483 4.24e-02 1bli b.71.1.1,c.1.8.1 27715,28702 1b8oA 284 4.41e-02 1b8oA c.56.2.1 33762 1f3lA 321 4.60e-02 1g6q2 c.66.1.6 59630 1chuA 540 4.75e-02 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1cbf 285 4.84e-02 1cbf c.90.1.1 35587 1iirA 415 5.14e-02 1iirA c.87.1.5 62453 1dpgA 485 5.14e-02 1dpgA c.2.1.3,d.81.1.5 30074,39989 1eceA 358 5.33e-02 1eceA c.1.8.3 28813 1iu8A 206 5.41e-02 c.56.4.1 71436 1e43A 483 5.88e-02 1bli b.71.1.1,c.1.8.1 59217,59218 1hi9A 274 6.10e-02 1hi9A c.99.1.1 61063 1jndA 420 6.12e-02 c.1.8.5,d.26.3.1 71757,71758 1qv9A 283 6.13e-02 c.127.1.1 96356 1ohlA 342 6.15e-02 c.1.10.3 87035 1gs5A 258 6.34e-02 c.73.1.2 70395 1wmaA 276 6.40e-02 1moq 368 6.42e-02 1moq c.80.1.1 35302 1fcqA 350 6.72e-02 c.1.8.9 65006 1cv8 174 6.76e-02 1cv8 d.3.1.1 37089 1c96A 753 6.97e-02 1amj c.8.2.1,c.83.1.1 30727,35403 1r45A 204 7.29e-02 1ubkS 267 7.33e-02 e.19.1.1 88423 1geeA 261 7.37e-02 c.2.1.2 90509 1a76 326 7.51e-02 1a76 a.60.7.1,c.120.1.2 18091,33361 1b5qA 472 8.60e-02 1b37B c.3.1.2,d.16.1.5 30404,37968 1vl2A 421 8.66e-02 c.26.2.1,d.210.1.1 108708,108709 1eq2A 310 8.75e-02 1eq2A c.2.1.2 29814 1g0oA 283 9.18e-02 1ybvA c.2.1.2 60181 1d3vA 323 9.27e-02 1d3vA c.42.1.1 32559 1jnrA 643 9.97e-02 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1v6sA 390 9.98e-02 c.86.1.1 100424 1ebfA 358 1.00e-01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1t5bA 201 1.02e-01 c.23.5.3 106433 1a9xA 1058 1.03e-01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1vp8A 201 1.04e-01 1e6uA 321 1.05e-01 1bsvA c.2.1.2 29805 1ff9A 450 1.06e-01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1f4pA 147 1.09e-01 5nul c.23.5.1 59651 1c4oA 664 1.14e-01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1v4vA 376 1.14e-01 c.87.1.3 100313 1w6uA 302 1.17e-01 7odcA 424 1.18e-01 7odcA b.49.2.3,c.1.6.1 26488,28650 1bia 321 1.24e-01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1g8mA 593 1.24e-01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1n3lA 372 1.25e-01 c.26.1.1 79966 1rttA 193 1.27e-01 c.23.5.4 105098 1k6iA 352 1.27e-01 c.2.1.2 68223 1od6A 160 1.29e-01 c.26.1.3 86836 1gveA 327 1.29e-01 c.1.7.1 70597 1es9A 232 1.30e-01 1wab c.23.10.3 31340 1eswA 500 1.30e-01 1cwyA c.1.8.1 59500 1rcqA 357 1.30e-01 b.49.2.2,c.1.6.1 104882,104883 1efyA 350 1.30e-01 1a26 a.41.1.1,d.166.1.2 17413,42275 1g24A 211 1.31e-01 1g24A d.166.1.1 42270 1ju2A 536 1.32e-01 c.3.1.2,d.16.1.1 77169,77170 1lj8A 493 1.41e-01 a.100.1.9,c.2.1.6 90392,90393 1hm9A 468 1.46e-01 b.81.1.4,c.68.1.5 65866,65867 1ro7A 259 1.47e-01 c.130.1.1 97667 1idpA 172 1.50e-01 d.17.4.1 83685 1hdhA 536 1.55e-01 c.76.1.2 65805 1gcyA 527 1.58e-01 1jdc b.71.1.1,c.1.8.1 27788,28775 1din 236 1.58e-01 1din c.69.1.9 34682 1m7yA 435 1.62e-01 c.67.1.4 78761 1g57A 217 1.65e-01 1g57A d.115.1.2 60253 1y0yA 353 1.70e-01 1g5aA 628 1.70e-01 b.71.1.1,c.1.8.1 65152,65153 1g87A 614 1.70e-01 a.102.1.2,b.2.2.2 83275,83276 1bdb 277 1.85e-01 1bdb c.2.1.2 29874 1fg7A 356 1.87e-01 1gewA c.67.1.1 59819 1dbwA 126 1.88e-01 1dbwA c.23.1.1 31095 1u9cA 224 1.95e-01 1t3iA 420 1.97e-01 c.67.1.3 106354 1d1qA 161 2.03e-01 1dg9A c.44.1.1 32642 1ejxC 567 2.05e-01 b.92.1.1,c.1.9.2 83184,83185 1i6lA 328 2.22e-01 c.26.1.1 66041 1h2eA 207 2.26e-01 c.60.1.1 70857 1m65A 245 2.28e-01 c.6.3.1 84847 1guzA 310 2.29e-01 c.2.1.5,d.162.1.1 65586,65587 1of8A 370 2.31e-01 c.1.10.4 92819 1rk6A 496 2.37e-01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1aj2 282 2.40e-01 1aj2 c.1.21.1 29665 1drw 273 2.41e-01 1drw c.2.1.3,d.81.1.3 30057,39972 5nul 138 2.41e-01 5nul c.23.5.1 31191 1xu9A 286 2.43e-01 1v5vA 401 2.49e-01 1snyA 267 2.58e-01 c.2.1.2 105833 1cnzA 363 2.59e-01 1cnzA c.77.1.1 35061 1gpuA 680 2.61e-01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1qksA 567 2.72e-01 1qksA a.3.1.2,b.70.2.1 15951,27710 1fo8A 343 2.88e-01 1foaA c.68.1.10 59927 1n9eA 787 2.89e-01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1rqpA 299 2.92e-01 b.141.1.1,c.132.1.1 97754,97755 1nh8A 304 2.92e-01 c.94.1.1,d.58.5.3 80507,80508 1l5oA 356 2.93e-01 c.39.1.1 77711 1chd 203 2.98e-01 1chd c.40.1.1 32478 1vhqA 232 2.99e-01 c.23.16.2 100696 1p3dA 475 3.02e-01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1q8fA 313 3.05e-01 c.70.1.1 96203 1lc0A 294 3.09e-01 c.2.1.3,d.81.1.4 73823,73824 1cfzA 162 3.18e-01 1cfzA c.56.1.1 33754 1mw9X 592 3.25e-01 e.10.1.1 91480 1iukA 140 3.29e-01 c.2.1.8 83712 1oi2A 366 3.29e-01 c.119.1.2 103802 1mtpA 323 3.33e-01 e.1.1.1 85107 1c7gA 456 3.34e-01 c.67.1.2 90415 1gr0A 367 3.35e-01 c.2.1.3,d.81.1.3 70379,70380 1ceo 343 3.36e-01 1ceo c.1.8.3 28808 1vrmA 325 3.48e-01 1azo 232 3.56e-01 1azo c.52.1.14 33329 1g5bA 221 3.56e-01 1g5bA d.159.1.3 60261 1wpnA 188 3.65e-01 1ea7A 310 3.66e-01 c.41.1.1 70086 1bykA 255 3.74e-01 1bykA c.93.1.1 35706 1gvnB 287 3.76e-01 c.37.1.21 76354 1dg9A 157 3.81e-01 1dg9A c.44.1.1 32637 2bkaA 242 3.81e-01 2pth 193 3.82e-01 2pth c.56.3.1 33793 1bg6 359 3.87e-01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1s2oA 244 3.87e-01 1b5pA 385 3.89e-01 c.67.1.1 90403 1n57A 291 4.06e-01 c.23.16.2 85328 1d2mA 665 4.14e-01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1ji1A 637 4.17e-01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1h0hA 977 4.20e-01 b.52.2.2,c.81.1.1 76435,76436 1g3qA 237 4.31e-01 1hyqA c.37.1.10 60237 1mtzA 293 4.33e-01 c.69.1.7 79467 1eluA 390 4.36e-01 1elqA c.67.1.3 34434 1h1yA 228 4.36e-01 c.1.2.2 76506 1g2oA 268 4.36e-01 1b8oA c.56.2.1 60228 1crzA 403 4.45e-01 1crzA b.68.4.1,c.51.2.1 27629,33211 1uk8A 282 4.52e-01 c.69.1.10 107907 1hxhA 253 4.60e-01 c.2.1.2 76725 1ju3A 583 4.64e-01 b.18.1.13,c.69.1.21 67300,67301 1d5rA 324 4.70e-01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1augA 215 4.76e-01 1a2zA c.56.4.1 33798 2gk4A 232 4.81e-01 1eg5A 384 4.88e-01 1ecxA c.67.1.3 34429 1jz8A 1023 4.95e-01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1ag9A 175 4.97e-01 1rcf c.23.5.1 31178 1o66A 275 5.03e-01 c.1.12.8 92547 1r62A 160 5.07e-01 d.122.1.3 104816 1pfvA 551 5.12e-01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1fjhA 257 5.22e-01 1fjhB c.2.1.2 29870 1fh9A 312 5.24e-01 1taxA c.1.8.3 28913 1uuqA 440 5.27e-01 c.1.8.3 100015 1txgA 335 5.39e-01 1v7rA 186 5.40e-01 c.51.4.1 100482 1oywA 523 5.45e-01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1d2fA 390 5.48e-01 1d2fA c.67.1.3 34411 1aocA 175 5.54e-01 1aocA 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