# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dtdA 303 5.23e-27 1aye c.56.5.1 33823 1m4lA 307 6.86e-25 c.56.5.1 78604 1eceA 358 8.55e-03 1eceA c.1.8.3 28813 1h7eA 245 6.10e-02 c.68.1.13 60717 1ceo 343 6.19e-02 1ceo c.1.8.3 28808 1t6cA 315 1.17e-01 c.55.1.8,c.55.1.8 106558,106559 1j2rA 199 4.50e-01 c.33.1.3 90788 1e58A 249 5.32e-01 1qhfA c.60.1.1 59262 1m22A 503 7.35e-01 c.117.1.1 78464 1wdpA 495 8.55e-01 1tw6A 133 1.10e+00 1mf7A 194 1.30e+00 c.62.1.1 84937 1vd5A 377 1.33e+00 a.102.1.7 108518 1xu9A 286 1.54e+00 1f89A 291 1.64e+00 d.160.1.1 64988 1vggA 161 1.74e+00 1pe1A 267 1.99e+00 c.1.10.4 94591 1s5aA 150 2.02e+00 d.17.4.10 98525 1ufyA 122 2.39e+00 d.79.1.2 88489 1kwgA 645 2.53e+00 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1gwyA 175 2.62e+00 b.97.1.1 83356 1h4pA 408 2.91e+00 c.1.8.3 90617 1gefA 123 3.22e+00 1gefA c.52.1.18 60465 1hyoA 421 3.51e+00 1qcnA b.34.8.1,d.177.1.1 59001,59002 1ev7A 317 3.63e+00 1ev7B c.52.1.9 33315 1flcA 432 3.66e+00 1flcA b.19.1.3,c.23.10.2 23837,31337 1c8uA 285 4.09e+00 1c8uA d.38.1.3,d.38.1.3 38547,38548 1ew0A 130 4.65e+00 1drmA d.110.3.2 40905 1hjsA 332 5.19e+00 c.1.8.3 83492 1rkqA 282 5.64e+00 c.108.1.10 97621 1qksA 567 5.85e+00 1qksA a.3.1.2,b.70.2.1 15951,27710 1eyeA 280 6.07e+00 1aj2 c.1.21.1 29672 1h09A 338 6.13e+00 b.109.1.1,c.1.8.8 83420,83421 1eswA 500 6.22e+00 1cwyA c.1.8.1 59500 1h1nA 305 6.47e+00 c.1.8.3 70855 1gzcA 239 6.67e+00 b.29.1.1 70803 1lo7A 141 6.73e+00 d.38.1.1 74144 1rjdA 334 7.07e+00 c.66.1.37 97558 1eq9A 222 7.23e+00 5ptp b.47.1.2 26068 1d8wA 426 7.37e+00 1de5A c.1.15.2 29394 1ls1A 295 7.50e+00 a.24.13.1,c.37.1.10 78170,78171 1cpo 299 7.78e+00 1cpo a.39.3.1,a.39.3.1 17390,17391 1b7yA 350 8.25e+00 1pysA d.104.1.1 40776 1fobA 334 8.48e+00 c.1.8.3 83255 1ek6A 348 8.73e+00 1xel c.2.1.2 29800 1ijbA 202 9.94e+00 c.62.1.1 71229 1dk8A 147 1.03e+01 1agrE a.91.1.1 18548 1h1yA 228 1.03e+01 c.1.2.2 76506 1km4A 247 1.04e+01 c.1.2.3 72740 1k5nA 276 1.06e+01 b.1.1.2,d.19.1.1 77266,77267 1tx4A 198 1.11e+01 1tx4A a.116.1.1 19098 1gqiA 708 1.12e+01 c.1.8.10,d.92.2.2 76279,76280 1jf3A 147 1.16e+01 a.1.1.2 71642 1kugA 203 1.18e+01 d.92.1.9 73008 1j6oA 268 1.30e+01 c.1.9.12 77088 1ad1A 266 1.30e+01 1aj2 c.1.21.1 29668 1gvfA 286 1.34e+01 c.1.10.2 70599 1go4A 205 1.39e+01 d.135.1.1 70292 1tu9A 134 1.44e+01 a.1.1.2 107320 1g8lA 411 1.46e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1ml4A 308 1.55e+01 c.78.1.1,c.78.1.1 79255,79256 1zjjA 263 1.65e+01 1b34B 118 1.67e+01 1b34B b.38.1.1 24797 1ye8A 178 1.73e+01 1k92A 455 1.73e+01 c.26.2.1,d.210.1.1 68325,68326 1ewnA 219 1.75e+01 1bnkA b.46.1.2 25762 1aua 296 1.75e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1cxqA 162 1.83e+01 1cxqA c.55.3.2 33621 1dwkA 156 1.86e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1fjgE 162 1.89e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1h1dA 221 1.97e+01 c.66.1.1 83452 1b5l 172 2.03e+01 1b5l a.26.1.3 16900 1tmxA 293 2.09e+01 1tqhA 247 2.19e+01 c.69.1.29 107225 1f4pA 147 2.22e+01 5nul c.23.5.1 59651 1bd0A 388 2.24e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1nc5A 373 2.26e+01 a.102.1.6 85548 1vfjA 116 2.29e+01 1fp3A 402 2.31e+01 1fp3A a.102.1.3 18842 1auoA 218 2.37e+01 1auoA c.69.1.14 34716 1drw 273 2.38e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1ja1A 622 2.40e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1dbwA 126 2.41e+01 1dbwA c.23.1.1 31095 1exbA 332 2.43e+01 1qrqA c.1.7.1 28666 1moq 368 2.46e+01 1moq c.80.1.1 35302 1mdc 133 2.46e+01 1hmt b.60.1.2 27198 1g291 372 2.48e+01 1g291 1u7iA 136 2.48e+01 d.32.1.7 107724 4uagA 437 2.50e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1vp8A 201 2.52e+01 1dfmA 223 2.54e+01 1d2iA c.52.1.5 33295 1cvl 319 2.56e+01 1cvl c.69.1.18 34786 1lqvA 193 2.57e+01 d.19.1.1 74206 1ehyA 294 2.65e+01 1ehyA c.69.1.11 34693 1xgkA 352 2.71e+01 1vdwA 254 2.72e+01 e.7.1.1 100569 1ab8A 220 2.82e+01 1azsA d.58.29.1 39414 1hd7A 318 2.84e+01 1bix d.151.1.1 41780 1k7iA 479 2.97e+01 b.80.7.1,d.92.1.6 77281,77282 1uasA 362 3.02e+01 b.71.1.1,c.1.8.1 88388,88389 2evbA 74 3.04e+01 1g5bA 221 3.05e+01 1g5bA d.159.1.3 60261 1vhuA 211 3.08e+01 c.50.1.2 100703 1dl2A 511 3.11e+01 1dl2A a.102.2.1 18844 1ef8A 261 3.11e+01 1ef8A c.14.1.3 30921 1k77A 260 3.14e+01 c.1.15.5 72096 1c7qA 445 3.19e+01 2pgi c.80.1.2 35307 1muwA 386 3.23e+01 c.1.15.3 79495 1k6iA 352 3.25e+01 c.2.1.2 68223 1bt3A 345 3.26e+01 1bt3A a.86.1.2 18507 1uuyA 167 3.31e+01 c.57.1.1 108059 1ob8A 135 3.31e+01 1tyv 542 3.33e+01 1tyv b.80.1.6 28038 1s95A 333 3.35e+01 d.159.1.3 105375 1bf2 750 3.36e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1dbqA 289 3.42e+01 1qpzA c.93.1.1 35666 1xteA 154 3.43e+01 1brwA 433 3.45e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1h6tA 291 3.56e+01 b.1.18.15,c.10.2.1 65686,65687 1qv9A 283 3.58e+01 c.127.1.1 96356 1brt 277 3.61e+01 1brt c.69.1.12 34699 1o7sA 127 3.63e+01 b.1.1.1 86644 1wnaA 131 3.63e+01 1oewA 329 3.65e+01 b.50.1.2 86924 1oaa 259 3.74e+01 1oaa c.2.1.2 29829 1lzlA 323 3.75e+01 c.69.1.2 78306 1nwwA 149 3.78e+01 d.17.4.8 86306 1iirA 415 3.80e+01 1iirA c.87.1.5 62453 1ak0 270 3.81e+01 1ak0 a.124.1.2 19345 1fyhB 229 3.90e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1q0rA 298 4.02e+01 c.69.1.28 95508 1ft5A 211 4.05e+01 1bvb a.138.1.3 19681 1goiA 499 4.09e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1lwbA 122 4.11e+01 a.133.1.3 84728 1edg 380 4.14e+01 1edg c.1.8.3 28807 1vl7A 157 4.20e+01 b.45.1.1 108732 1dvkA 173 4.26e+01 1dvkA a.72.1.1 18319 1f2tA 149 4.27e+01 1f2tA c.37.1.12 32373 1cid 177 4.28e+01 1cid b.1.1.1,b.1.1.3 19740,21679 1dcs 311 4.29e+01 1dcs b.82.2.1 28124 1bb8 71 4.31e+01 2bb8 d.10.1.1 37478 1d3cA 686 4.33e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1xdzA 240 4.40e+01 1uteA 313 4.50e+01 1uteA d.159.1.1 42078 1g0cA 364 4.60e+01 7a3hA c.1.8.3 60165 1mtyD 512 4.62e+01 1mhyD a.25.1.2 16742 1cdcA 99 4.98e+01 1cdcA b.1.1.1 19746 1gd0A 122 5.02e+01 1dptA d.80.1.3 39834 1e5kA 201 5.16e+01 1fr9A c.68.1.8 34578 1oz2A 331 5.19e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1g2qA 187 5.28e+01 c.61.1.1 65117 1azsA 220 5.30e+01 1azsA d.58.29.1 39416 1gqnA 252 5.30e+01 c.1.10.1 90514 1gmlA 178 5.49e+01 c.8.5.2 70273 1v05A 96 5.52e+01 1g24A 211 5.85e+01 1g24A d.166.1.1 42270 1ekqA 272 5.91e+01 1c3qA c.72.1.2 34941 1vlpA 441 5.96e+01 d.41.2.2,d.41.2.3 108840,108841 1n2eA 300 5.96e+01 c.26.1.4 85268 1sz7A 200 5.97e+01 1jbeA 128 5.98e+01 3chy c.23.1.1 62845 1xm3A 264 6.09e+01 1wwzA 159 6.09e+01 1x9dA 538 6.24e+01 1gxmA 332 6.28e+01 a.102.5.1 76371 1t0bA 252 6.36e+01 c.23.16.6 106199 1o08A 221 6.42e+01 c.108.1.6 86525 1cv8 174 6.60e+01 1cv8 d.3.1.1 37089 1io7A 368 6.66e+01 1f4tA a.104.1.1 18971 1ie9A 259 6.80e+01 1db1A a.123.1.1 62318 1cpcA 162 6.91e+01 1cpcA a.1.1.3 15643 1dxy 333 6.92e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1o9gA 250 6.94e+01 c.66.1.29 86692 1rwhA 757 6.94e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1o66A 275 6.97e+01 c.1.12.8 92547 1r6dA 337 7.06e+01 c.2.1.2 97148 1e4iA 447 7.08e+01 1e70M c.1.8.4 59225 1bco 327 7.09e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1i27A 73 7.13e+01 1i27A a.4.5.30 61555 1r5rA 119 7.36e+01 a.39.2.1 97104 1cuk 203 7.36e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1euwA 152 7.40e+01 1dupA b.85.4.1 28349 1x74A 360 7.43e+01 1c3pA 375 7.57e+01 1c3pA c.42.1.2 32606 2dfkA 402 7.59e+01 1sqsA 242 7.66e+01 c.23.5.5 98968 1p5dX 463 7.68e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1a0cA 438 7.71e+01 1a0cA c.1.15.3 29529 1nulA 152 7.79e+01 1nulA c.61.1.1 34011 1y8aA 332 7.84e+01 1vjuA 309 7.98e+01 d.248.1.1 100835 2gk3A 256 8.01e+01 1w0pA 781 8.18e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1jtvA 327 8.27e+01 c.2.1.2 84230 1avsA 90 8.54e+01 1cll a.39.1.5 17226 1b77A 228 8.55e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1cqxA 403 8.57e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1t0tV 248 8.59e+01 d.58.4.10 106229 1g55A 343 8.63e+01 1g55A c.66.1.26 34247 1g94A 448 8.63e+01 b.71.1.1,c.1.8.1 65169,65170 1flcB 175 8.73e+01 1flcB h.3.1.1 45716 1v4vA 376 8.75e+01 c.87.1.3 100313 1bouB 302 8.78e+01 1bouB c.56.6.1 33859 1jpzA 473 8.81e+01 a.104.1.1 67069 1qd1A 325 8.86e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494