# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dtdA 303 1.88e-27 1aye c.56.5.1 33823 1m4lA 307 3.97e-25 c.56.5.1 78604 1pe1A 267 4.75e-02 c.1.10.4 94591 1eceA 358 8.36e-02 1eceA c.1.8.3 28813 1vd5A 377 8.66e-02 a.102.1.7 108518 1ceo 343 1.30e-01 1ceo c.1.8.3 28808 1eswA 500 1.86e-01 1cwyA c.1.8.1 59500 1e2kA 331 2.33e-01 1qhiA c.37.1.1 31854 1wdpA 495 2.69e-01 1cs0A 1073 3.73e-01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1e58A 249 3.82e-01 1qhfA c.60.1.1 59262 1q74A 303 6.55e-01 c.134.1.1 96019 1mf7A 194 6.85e-01 c.62.1.1 84937 1k7iA 479 8.79e-01 b.80.7.1,d.92.1.6 77281,77282 1h4pA 408 9.06e-01 c.1.8.3 90617 1aop 497 9.19e-01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1bn7A 294 1.07e+00 1bn6A c.69.1.8 34677 1a9xA 1058 1.07e+00 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1hjsA 332 1.08e+00 c.1.8.3 83492 1bb8 71 1.09e+00 2bb8 d.10.1.1 37478 1h7eA 245 1.13e+00 c.68.1.13 60717 1nc5A 373 1.25e+00 a.102.1.6 85548 1rtqA 299 1.54e+00 c.56.5.4 97819 1ijbA 202 1.57e+00 c.62.1.1 71229 2cfuA 658 1.58e+00 1u14A 172 2.07e+00 c.51.4.3 107579 1lzlA 323 2.18e+00 c.69.1.2 78306 1fobA 334 2.69e+00 c.1.8.3 83255 1gpmA 525 2.86e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wnaA 131 2.86e+00 1g8lA 411 3.28e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1oewA 329 3.68e+00 b.50.1.2 86924 1uteA 313 3.99e+00 1uteA d.159.1.1 42078 1sqsA 242 4.30e+00 c.23.5.5 98968 4uagA 437 4.31e+00 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1goiA 499 4.33e+00 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1hdhA 536 4.41e+00 c.76.1.2 65805 1edg 380 4.52e+00 1edg c.1.8.3 28807 1n4wA 504 4.75e+00 c.3.1.2,d.16.1.1 91676,91677 1o2dA 371 5.12e+00 e.22.1.2 86591 1km4A 247 5.14e+00 c.1.2.3 72740 1qw9A 502 5.29e+00 b.71.1.2,c.1.8.3 96466,96467 1h09A 338 5.47e+00 b.109.1.1,c.1.8.8 83420,83421 1eyeA 280 5.66e+00 1aj2 c.1.21.1 29672 1ewnA 219 5.83e+00 1bnkA b.46.1.2 25762 1flcA 432 5.93e+00 1flcA b.19.1.3,c.23.10.2 23837,31337 1t0bA 252 6.18e+00 c.23.16.6 106199 1rkqA 282 6.31e+00 c.108.1.10 97621 1tuaA 191 6.38e+00 d.51.1.1,d.51.1.1 107321,107322 1y8aA 332 6.68e+00 1bouB 302 6.73e+00 1bouB c.56.6.1 33859 1h8mA 140 8.09e+00 1h8mA d.110.4.1 60782 1vggA 161 8.38e+00 1c3pA 375 9.05e+00 1c3pA c.42.1.2 32606 1go4A 205 9.61e+00 d.135.1.1 70292 1b7yA 350 9.84e+00 1pysA d.104.1.1 40776 1zjjA 263 1.09e+01 1brt 277 1.12e+01 1brt c.69.1.12 34699 1cp2A 269 1.14e+01 1cp2A c.37.1.10 32269 1ryoA 327 1.19e+01 c.94.1.2 98108 1r6dA 337 1.20e+01 c.2.1.2 97148 1f0kA 364 1.23e+01 1f0kA c.87.1.2 35465 1hx0A 496 1.24e+01 b.71.1.1,c.1.8.1 61346,61347 1s95A 333 1.25e+01 d.159.1.3 105375 1ad1A 266 1.28e+01 1aj2 c.1.21.1 29668 1ju2A 536 1.31e+01 c.3.1.2,d.16.1.1 77169,77170 1dl2A 511 1.33e+01 1dl2A a.102.2.1 18844 1di6A 195 1.33e+01 1di6A c.57.1.1 33863 1dxeA 256 1.41e+01 1dxeA c.1.12.5 29310 1g7sA 594 1.58e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1euwA 152 1.60e+01 1dupA b.85.4.1 28349 1o1yA 239 1.60e+01 c.23.16.1 86554 1w4xA 542 1.64e+01 c.3.1.5,c.3.1.5 109171,109172 1m22A 503 1.65e+01 c.117.1.1 78464 1ehyA 294 1.67e+01 1ehyA c.69.1.11 34693 1hd7A 318 1.67e+01 1bix d.151.1.1 41780 1d3cA 686 1.68e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1nvmA 345 1.74e+01 a.5.7.1,c.1.10.5 86249,86250 1hyoA 421 1.81e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1drw 273 1.82e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1rhcA 330 1.87e+01 c.1.16.3 97468 1h6tA 291 1.91e+01 b.1.18.15,c.10.2.1 65686,65687 1gvfA 286 1.92e+01 c.1.10.2 70599 1ek6A 348 1.92e+01 1xel c.2.1.2 29800 1avqA 228 1.93e+01 1avqA c.52.1.13 33326 1d8wA 426 1.94e+01 1de5A c.1.15.2 29394 1j2rA 199 1.96e+01 c.33.1.3 90788 1vhnA 318 1.99e+01 c.1.4.1 100693 1vl7A 157 2.01e+01 b.45.1.1 108732 1dxy 333 2.02e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1ve2A 235 2.08e+01 1tw6A 133 2.17e+01 1uuyA 167 2.22e+01 c.57.1.1 108059 1wvgA 359 2.23e+01 1ye8A 178 2.24e+01 1h1nA 305 2.28e+01 c.1.8.3 70855 1x74A 360 2.29e+01 1mj5A 302 2.29e+01 c.69.1.8 91285 1p5dX 463 2.29e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1mnaA 298 2.33e+01 c.69.1.22 79322 1bgp 309 2.37e+01 1bgp a.93.1.1 18690 1h1yA 228 2.40e+01 c.1.2.2 76506 1g5bA 221 2.42e+01 1g5bA d.159.1.3 60261 1lj8A 493 2.42e+01 a.100.1.9,c.2.1.6 90392,90393 1wcv1 257 2.51e+01 1nnlA 225 2.54e+01 c.108.1.4 85906 1q6zA 528 2.58e+01 1ds1A 324 2.62e+01 1drtA b.82.2.2 28127 1brwA 433 2.66e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1mtzA 293 2.67e+01 c.69.1.7 79467 1b8oA 284 2.74e+01 1b8oA c.56.2.1 33762 1f4pA 147 2.77e+01 5nul c.23.5.1 59651 1f1uA 323 2.78e+01 d.32.1.3,d.32.1.3 83200,83201 1ml4A 308 2.83e+01 c.78.1.1,c.78.1.1 79255,79256 1w3oA 216 2.90e+01 1ew0A 130 2.94e+01 1drmA d.110.3.2 40905 1e4iA 447 2.94e+01 1e70M c.1.8.4 59225 1f89A 291 2.94e+01 d.160.1.1 64988 1o66A 275 2.96e+01 c.1.12.8 92547 1a6q 382 3.03e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1xx1A 285 3.04e+01 1tqhA 247 3.07e+01 c.69.1.29 107225 1efdN 266 3.19e+01 1efdN c.92.2.1 35597 1bd0A 388 3.25e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1ewkA 490 3.27e+01 1ewkA c.93.1.1 35712 1jmkC 230 3.41e+01 c.69.1.22 71747 1es9A 232 3.42e+01 1wab c.23.10.3 31340 1fmtA 314 3.53e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1auoA 218 3.68e+01 1auoA c.69.1.14 34716 1i24A 404 3.76e+01 c.2.1.2 83663 1y81A 138 3.79e+01 2evbA 74 3.86e+01 1ev7A 317 3.93e+01 1ev7B c.52.1.9 33315 1b34B 118 3.94e+01 1b34B b.38.1.1 24797 1i0vA 104 3.95e+01 9rnt d.1.1.4 36054 1g291 372 3.97e+01 1g291 1muwA 386 3.97e+01 c.1.15.3 79495 1a76 326 3.99e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1e5pA 151 4.03e+01 1bj7 b.60.1.1 59272 1e6cA 173 4.14e+01 1shkA c.37.1.2 59296 1b6g 310 4.26e+01 1b6g c.69.1.8 34661 1mfgA 95 4.31e+01 b.36.1.1 79043 1i9zA 347 4.33e+01 1i9yA d.151.1.2 62102 1xk7A 408 4.37e+01 1x6oA 174 4.41e+01 b.34.5.2,b.40.4.5 109493,109494 1ag9A 175 4.42e+01 1rcf c.23.5.1 31178 1amm 174 4.51e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1gx3A 284 4.52e+01 d.3.1.5 70678 1o97C 264 4.52e+01 c.26.2.3 81232 1g87A 614 4.58e+01 a.102.1.2,b.2.2.2 83275,83276 1vrmA 325 4.62e+01 1exbA 332 4.65e+01 1qrqA c.1.7.1 28666 1tjyA 316 4.67e+01 c.93.1.1 107062 1i6lA 328 4.69e+01 c.26.1.1 66041 1o5kA 306 4.75e+01 c.1.10.1 92504 1bqcA 302 4.86e+01 1bqcA c.1.8.3 28831 1g0cA 364 4.97e+01 7a3hA c.1.8.3 60165 1g2iA 166 5.16e+01 1g2iA c.23.16.2 31438 1ckeA 227 5.26e+01 1ckeA c.37.1.1 31846 1y8oB 128 5.28e+01 1c8nA 276 5.52e+01 1smvA b.121.4.7 23308 1v4vA 376 5.54e+01 c.87.1.3 100313 1x8gA 227 5.55e+01 1y0yA 353 5.55e+01 1gwyA 175 5.58e+01 b.97.1.1 83356 1xm3A 264 5.61e+01 1ufyA 122 5.67e+01 d.79.1.2 88489 1nwwA 149 5.69e+01 d.17.4.8 86306 1fecA 490 5.81e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2dfkA 402 5.83e+01 1esc 306 5.89e+01 1esc c.23.10.1 31334 1ekqA 272 6.01e+01 1c3qA c.72.1.2 34941 1cjxA 357 6.02e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1lqtA 456 6.18e+01 c.3.1.1,c.4.1.1 74198,74199 1c1kA 217 6.19e+01 1c1kA a.120.1.1 19239 1aohA 147 6.28e+01 1aohA b.2.2.2 22401 1b43A 340 6.31e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1dozA 309 6.38e+01 1ak1 c.92.1.1 35592 1fxxA 482 6.39e+01 1fxxA c.55.3.5 33726 1cnv 299 6.46e+01 1cnv c.1.8.5 28989 1jyeA 349 6.50e+01 c.93.1.1 67455 1mtyD 512 6.61e+01 1mhyD a.25.1.2 16742 1xubA 298 6.62e+01 1ispA 181 6.65e+01 c.69.1.18 76778 1ah7 245 6.73e+01 1ah7 a.124.1.1 19339 1hqkA 154 6.74e+01 c.16.1.1 65902 1pj5A 830 6.78e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1kwgA 645 6.85e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ejdA 419 6.86e+01 1uae d.68.2.2 39576 1pbyB 337 6.94e+01 b.69.2.2 94422 1tr9A 341 6.98e+01 1uasA 362 6.99e+01 b.71.1.1,c.1.8.1 88388,88389 1p3dA 475 7.07e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1vhuA 211 7.13e+01 c.50.1.2 100703 1tovA 98 7.23e+01 b.34.10.1 107179 1dysA 348 7.23e+01 1bvwA c.6.1.1 30669 1ltzA 297 7.24e+01 d.178.1.1 74254 1pkoA 139 7.30e+01 b.1.1.1 88147 1o08A 221 7.38e+01 c.108.1.6 86525 1bif 469 7.48e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1gk9B 557 7.64e+01 1gpjA 404 7.66e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1c1dA 355 7.79e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1ft5A 211 7.92e+01 1bvb a.138.1.3 19681 1yx1A 264 8.00e+01 1qnrA 344 8.10e+01 1qnoA c.1.8.3 28834 1cdcA 99 8.18e+01 1cdcA b.1.1.1 19746 1gqeA 365 8.24e+01 e.38.1.1 70351 1fdr 248 8.33e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1q0rA 298 8.44e+01 c.69.1.28 95508 1bx1A 314 8.45e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1j6oA 268 8.49e+01 c.1.9.12 77088 1rmwA 212 8.82e+01 1b7yB 785 8.86e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 4eugA 229 8.86e+01 3eugA c.18.1.1 31019 1svsA 353 8.98e+01 c.37.1.8 106051