Best Alignments for T0289

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bcoA/T0289-2bcoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bcoA/T0289-2bcoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2778e-212.75e-83
1h8lA/T0289-1h8lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h8lA/T0289-1h8lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4985e-217.18e-78 b.3.2.1
c.56.5.1
1yw4A/T0289-1yw4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yw4A/T0289-1yw4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1616e-193.07e-74
2bo9A/T0289-2bo9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bo9A/T0289-2bo9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6040e-143.17e-66
1z5rA/T0289-1z5rA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z5rA/T0289-1z5rA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3552e-141.12e-65
2c1cA/T0289-2c1cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c1cA/T0289-2c1cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0195e-145.91e-61
1kwmA/T0289-1kwmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kwmA/T0289-1kwmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9892e-133.50e-61 c.56.5.1
d.58.3.1
1dtdA/T0289-1dtdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dtdA/T0289-1dtdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3958e-135.50e-60 1aye c.56.5.1
1obr/T0289-1obr-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1obr/T0289-1obr-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3268e-126.70e-52 1aye c.56.5.2
1yw6A/T0289-1yw6A-t04-global-adpstyle1.a2m 1yw6A/T0289-1yw6A-t04-global-adpstyle1.al 1.1549e-109.33e-51

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001