# List of top-scoring protein chains for T0289.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cpb 306 4.90e-26 1aye c.56.5.1 33826 1z5rA 306 5.99e-26 1zliA 309 9.32e-26 2bo9A 308 9.46e-26 2boaA 404 2.81e-25 1kwmA 402 3.80e-25 c.56.5.1,d.58.3.1 73079,73080 1nsa 395 5.89e-25 1aye c.56.5.1,d.58.3.1 33825,39066 1dtdA 303 6.02e-25 1aye c.56.5.1 33823 1aye 401 3.25e-24 1aye c.56.5.1,d.58.3.1 33824,39065 1h8lA 380 6.13e-23 b.3.2.1,c.56.5.1 65737,65738 1pytB 309 1.85e-22 1aye c.56.5.1 33820 2ctc 307 1.86e-22 1aye c.56.5.1 33802 1yme 309 2.11e-22 1aye c.56.5.1 33804 1m4lA 307 2.12e-22 c.56.5.1 78604 1cbx 307 5.54e-22 1aye c.56.5.1 33813 1bavA 309 5.55e-22 1aye c.56.5.1 33806 5cpa 307 5.58e-22 1aye c.56.5.1 33811 1pca 403 1.03e-21 1aye c.56.5.1,d.58.3.1 33822,39063 1uwyA 426 3.11e-21 b.3.2.1,c.56.5.1 100130,100131 2c1cA 312 3.20e-21 1yw6A 335 8.87e-20 1obr 326 4.17e-19 1aye c.56.5.2 33828 1jqgA 433 4.91e-18 c.56.5.1,d.58.3.1 71791,71792 1yw4A 341 1.58e-17 2g9dA 350 6.02e-15 2bcoA 350 2.00e-14 1m22A 503 8.29e-01 c.117.1.1 78464 1npeA 267 2.64e+00 b.68.5.1 92032 1ihp 438 2.73e+00 1ihp c.60.1.2 33993 1rwzA 245 4.91e+00 d.131.1.2,d.131.1.2 98005,98006 1obaA 339 6.96e+00 b.109.1.1,c.1.8.8 92753,92754 1pjr 724 9.10e+00 1pjr c.37.1.19,c.37.1.19 32391,32392 1jwqA 179 9.97e+00 c.56.5.6 90921 1gq6A 313 1.02e+01 c.42.1.1 70341 1h09A 338 1.12e+01 b.109.1.1,c.1.8.8 83420,83421 1un2A 197 1.16e+01 c.47.1.13 99645 1vrxA 358 1.69e+01 1pbv 195 1.84e+01 1pbv a.118.3.1 19179 1dbxA 158 1.85e+01 1dbuA d.116.1.1 40928 1eqpA 394 1.85e+01 1cz1A c.1.8.3 28812 1w7dA 137 1.89e+01 1y7wA 291 1.97e+01 1vfoA 585 1.98e+01 1eqcA 394 2.12e+01 1cz1A c.1.8.3 28811 1shxA 138 2.15e+01 1jf6A 585 2.15e+01 b.1.18.2,b.71.1.1,c.1.8.1 71650,71651,71652 1vb9A 585 2.16e+01 1ji2A 585 2.19e+01 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 1jf5A 585 2.20e+01 b.1.18.2,b.71.1.1,c.1.8.1 71644,71645,71646 1g1yA 585 2.21e+01 1bvzA b.1.18.2,b.71.1.1,c.1.8.1 60210,60211,60212 1x8mA 288 2.25e+01 b.82.1.13 109516 1eceA 358 2.25e+01 1eceA c.1.8.3 28813 1pbyB 337 2.34e+01 b.69.2.2 94422 1wzmA 585 2.45e+01 1w4xA 542 2.46e+01 c.3.1.5,c.3.1.5 109171,109172 1xruA 282 2.49e+01 1wzlA 585 2.58e+01 2bwrA 401 2.68e+01 1wzkA 585 2.71e+01 1r8mE 203 2.83e+01 a.118.3.1 97242 1t71A 281 2.84e+01 1ud3A 480 2.91e+01 b.71.1.1,c.1.8.1 88471,88472 1w9xA 481 2.95e+01 1r8sE 203 2.99e+01 a.118.3.1 97248 1ud2A 480 3.03e+01 b.71.1.1,c.1.8.1 88469,88470 1yq1A 208 3.24e+01 1jd7A 453 3.26e+01 b.71.1.1,c.1.8.1 77104,77105 1ycdA 243 3.52e+01 1g94A 448 3.80e+01 b.71.1.1,c.1.8.1 65169,65170 2c5uA 375 3.84e+01 1kxhA 448 3.86e+01 b.71.1.1,c.1.8.1 73151,73152 1aqm 453 3.90e+01 1smd b.71.1.1,c.1.8.1 27717,28704 1uw5A 270 3.90e+01 d.129.3.4 100075 2ccmA 191 4.02e+01 2fsrA 195 4.17e+01 1jd9A 453 4.20e+01 b.71.1.1,c.1.8.1 77106,77107 1gzjA 304 4.22e+01 c.1.8.3 70813 1kijA 390 4.46e+01 d.14.1.3,d.122.1.2 72514,72515 1kcmA 270 4.46e+01 d.129.3.4 72300 1vhmA 195 4.56e+01 d.110.2.1 100691 1t27A 271 4.57e+01 d.129.3.4 99075 1mhyD 521 4.58e+01 1mhyD a.25.1.2 16780 1f3fA 155 4.60e+01 1npk d.58.6.1 39101 1uwkA 557 4.77e+01 e.51.1.1 108065 1uwlA 557 4.80e+01 e.51.1.1 108067 1h32A 261 4.82e+01 a.3.1.8,a.3.1.8 76618,76619 1h1nA 305 4.82e+01 c.1.8.3 70855 1wxqA 397 4.90e+01 1ulsA 245 4.91e+01 1ypxA 375 4.91e+01 1w1uA 557 4.96e+01 e.51.1.1 109079 2axtD 352 4.97e+01 1i8tA 367 5.05e+01 c.4.1.3,d.16.1.7 66094,66095 1toh 343 5.15e+01 4pah d.178.1.1 42573 1m2hA 249 5.19e+01 c.31.1.5 84751 1pmmA 466 5.23e+01 c.67.1.6 94901 1lwuC 323 5.28e+01 d.171.1.1,h.1.8.1 74312,74313 1vcnA 550 5.48e+01 c.23.16.1,c.37.1.10 108506,108507 1vcoA 550 5.49e+01 c.23.16.1,c.37.1.10 108508,108509 1phzA 429 5.51e+01 4pah d.58.18.3,d.178.1.1 39358,42583 1m2gA 249 5.53e+01 c.31.1.5 84750 2pia 321 5.59e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1n73C 330 5.68e+01 d.171.1.1,h.1.8.1 80217,80218 1aew 174 5.77e+01 2fha a.25.1.1 16676 2tohA 343 5.80e+01 4pah d.178.1.1 42574 2fgxA 107 5.80e+01 1cbg 490 5.81e+01 1e70M c.1.8.4 28933 1m2kA 249 5.83e+01 c.31.1.5 84754 1s31A 273 5.84e+01 1tdwA 308 5.90e+01 2fjcA 156 5.91e+01 1xeyA 466 6.08e+01 1j1iA 296 6.43e+01 c.69.1.10 83977 1m2jA 249 6.49e+01 c.31.1.5 84753 1khtA 192 6.81e+01 c.37.1.1 84401 1i7dA 659 6.85e+01 1d6mA e.10.1.1 61886 1cqwA 295 6.87e+01 1b6g c.69.1.8 34679 1d6mA 653 7.15e+01 1d6mA e.10.1.1 43248 1ub0A 258 7.17e+01 c.72.1.2 88394 1ncl 150 7.30e+01 1npk d.58.6.1 39109 1bn7A 294 7.31e+01 1bn6A c.69.1.8 34677 1yal 218 7.37e+01 1cs8A d.3.1.1 37025 1xz3A 174 7.37e+01 1n82A 331 7.40e+01 c.1.8.3 91703 1j8uA 325 7.45e+01 d.178.1.1 71611 1bwkA 399 7.45e+01 1oyc c.1.4.1 28605 1rv9A 259 7.46e+01 d.194.1.2 105105 1k03A 399 7.49e+01 c.1.4.1 63322 1bwlA 399 7.50e+01 1oyc c.1.4.1 28606 1oyc 400 7.60e+01 1oyc c.1.4.1 28603 1hhqA 155 7.71e+01 1npk d.58.6.1 61044 1pzmA 211 7.99e+01 c.61.1.1 104395 1mffA 114 8.00e+01 1dptA d.80.1.3 39859 1ew3A 159 8.07e+01 1mup b.60.1.1 27114 1ex2A 189 8.09e+01 1ex2A c.51.4.2 33225 1hlwA 155 8.16e+01 1npk d.58.6.1 39100 1vbpA 149 8.17e+01 b.77.3.1 108487 1vf8A 377 8.27e+01 1vhkA 268 8.29e+01 b.122.1.2,c.116.1.5 100680,100681 1ibjA 464 8.32e+01 1ibjA c.67.1.3 62162 1wrmA 165 8.34e+01 1tlhB 81 8.42e+01 1npk 154 8.44e+01 1npk d.58.6.1 39099 1f6tA 155 8.50e+01 1npk d.58.6.1 39110 1q90B 215 8.64e+01 f.21.1.2 96241 4pah 308 8.67e+01 4pah d.178.1.1 42576 1dmwA 307 8.73e+01 4pah d.178.1.1 42580 1c7qA 445 8.75e+01 2pgi c.80.1.2 35307 1j4tA 149 8.79e+01 b.77.3.1 71515