# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bo9A 308 5.62e-27 1z5rA 306 6.77e-27 1dtdA 303 3.80e-26 1aye c.56.5.1 33823 1kwmA 402 5.24e-26 c.56.5.1,d.58.3.1 73079,73080 1m4lA 307 8.28e-24 c.56.5.1 78604 1yw4A 341 7.27e-19 1jwqA 179 6.62e-02 c.56.5.6 90921 1eceA 358 8.42e-02 1eceA c.1.8.3 28813 1m22A 503 9.40e-02 c.117.1.1 78464 1hc7A 477 1.46e-01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1h1nA 305 2.62e-01 c.1.8.3 70855 1tvnA 293 3.97e-01 1bn7A 294 5.51e-01 1bn6A c.69.1.8 34677 1sflA 238 7.89e-01 1i7dA 659 8.08e-01 1d6mA e.10.1.1 61886 1xruA 282 9.26e-01 1r8sE 203 1.22e+00 a.118.3.1 97248 1n82A 331 1.52e+00 c.1.8.3 91703 1uuqA 440 1.61e+00 c.1.8.3 100015 1r8mE 203 1.70e+00 a.118.3.1 97242 1zhaA 267 1.78e+00 1ak0 270 1.78e+00 1ak0 a.124.1.2 19345 1hd7A 318 1.80e+00 1bix d.151.1.1 41780 1edg 380 1.90e+00 1edg c.1.8.3 28807 1w4xA 542 2.01e+00 c.3.1.5,c.3.1.5 109171,109172 1wkyA 464 2.04e+00 1mj5A 302 2.05e+00 c.69.1.8 91285 1ht6A 405 2.19e+00 b.71.1.1,c.1.8.1 83629,83630 1dozA 309 2.24e+00 1ak1 c.92.1.1 35592 1pe1A 267 2.37e+00 c.1.10.4 94591 1rt8A 513 2.38e+00 a.40.1.1 105095 1j1iA 296 2.49e+00 c.69.1.10 83977 1ycdA 243 2.51e+00 1wrmA 165 2.58e+00 1s9uA 207 2.81e+00 a.184.1.1 105390 1gqiA 708 3.30e+00 c.1.8.10,d.92.2.2 76279,76280 1w8sA 263 3.32e+00 1w0mA 226 3.49e+00 c.1.1.1 109027 1h4pA 408 3.77e+00 c.1.8.3 90617 1h7eA 245 3.78e+00 c.68.1.13 60717 1g94A 448 3.89e+00 b.71.1.1,c.1.8.1 65169,65170 1t71A 281 4.11e+00 1ym5A 300 4.15e+00 1h09A 338 4.31e+00 b.109.1.1,c.1.8.8 83420,83421 1qo7A 394 4.42e+00 1qo7A c.69.1.11 34697 1jbkA 195 4.52e+00 c.37.1.20 71631 1j2rA 199 4.53e+00 c.33.1.3 90788 2pia 321 4.67e+00 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1xg7A 250 4.77e+00 1g0cA 364 5.58e+00 7a3hA c.1.8.3 60165 7a3hA 303 5.86e+00 7a3hA c.1.8.3 28817 1pbyB 337 5.98e+00 b.69.2.2 94422 1vf8A 377 6.45e+00 2a67A 167 6.56e+00 1w66A 232 6.62e+00 1gvfA 286 6.77e+00 c.1.10.2 70599 1nmoA 247 7.43e+00 c.135.1.1 91980 1o60A 292 7.65e+00 c.1.10.4 92532 1h1yA 228 8.42e+00 c.1.2.2 76506 1ad1A 266 8.44e+00 1aj2 c.1.21.1 29668 1v2dA 381 9.52e+00 c.67.1.1 108281 1rwzA 245 9.74e+00 d.131.1.2,d.131.1.2 98005,98006 1wzlA 585 9.79e+00 1npeA 267 1.04e+01 b.68.5.1 92032 1wlsA 328 1.05e+01 1qysA 106 1.06e+01 k.41.1.1 96603 1h1dA 221 1.07e+01 c.66.1.1 83452 1zzmA 259 1.09e+01 1yzyA 413 1.10e+01 1fobA 334 1.10e+01 c.1.8.3 83255 1gq6A 313 1.12e+01 c.42.1.1 70341 2f46A 156 1.18e+01 1yr2A 741 1.21e+01 1b8oA 284 1.21e+01 1b8oA c.56.2.1 33762 1fi4A 416 1.25e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1wg8A 285 1.26e+01 2a9sA 171 1.26e+01 1j8uA 325 1.27e+01 d.178.1.1 71611 2gl5A 410 1.27e+01 1mlwA 301 1.28e+01 d.178.1.1 79289 1shxA 138 1.30e+01 1s95A 333 1.30e+01 d.159.1.3 105375 2c6qA 351 1.33e+01 1im5A 180 1.37e+01 c.33.1.3 66211 1p35A 299 1.39e+01 1p35A b.28.1.1 23925 1z85A 234 1.40e+01 1lc5A 364 1.46e+01 c.67.1.1 73827 1khtA 192 1.49e+01 c.37.1.1 84401 1vjzA 341 1.49e+01 c.1.8.3 100838 1r3dA 264 1.52e+01 1xovA 326 1.53e+01 1nt2B 258 1.54e+01 a.183.1.1 86150 1jjtA 228 1.55e+01 1a7tA d.157.1.1 63139 1sbyA 254 1.56e+01 1u0mA 382 1.60e+01 c.95.1.2,c.95.1.2 107557,107558 1e0cA 271 1.66e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1oe4A 247 1.67e+01 c.18.1.3 86895 1k0fA 277 1.78e+01 c.92.2.2 71974 1xyzA 347 1.82e+01 1taxA c.1.8.3 28804 1d3vA 323 1.82e+01 1d3vA c.42.1.1 32559 1v77A 212 1.85e+01 c.6.3.2 108402 1c7qA 445 1.89e+01 2pgi c.80.1.2 35307 1xb2B 291 1.92e+01 1yn9A 169 1.96e+01 1n55A 251 1.98e+01 c.1.1.1 80007 2gsq 202 1.99e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1p3dA 475 2.03e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1uwkA 557 2.04e+01 e.51.1.1 108065 1e1oA 504 2.07e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1e58A 249 2.11e+01 1qhfA c.60.1.1 59262 1el5A 389 2.11e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1toaA 313 2.11e+01 1toaA c.92.2.2 35598 1vhoA 346 2.14e+01 b.49.3.1,c.56.5.4 100694,100695 1snrA 341 2.19e+01 b.6.1.3,b.6.1.3 105823,105824 2ag5A 246 2.19e+01 1zedA 484 2.19e+01 1m6yA 301 2.20e+01 a.60.13.1,c.66.1.23 78716,78717 1qddA 144 2.25e+01 1qddA d.169.1.1 42324 1uteA 313 2.28e+01 1uteA d.159.1.1 42078 1vkcA 158 2.29e+01 1wleA 501 2.41e+01 1po5A 476 2.42e+01 a.104.1.1 94963 1mml 265 2.44e+01 1mml e.8.1.2 43015 1v73A 342 2.54e+01 1jl2A 156 2.57e+01 c.55.3.1 66822 2b9wA 424 2.58e+01 1fp3A 402 2.59e+01 1fp3A a.102.1.3 18842 1wdiA 345 2.60e+01 1qsgA 265 2.63e+01 1eny c.2.1.2 29935 1xx1A 285 2.69e+01 1dbxA 158 2.69e+01 1dbuA d.116.1.1 40928 1gqnA 252 2.73e+01 c.1.10.1 90514 2axpA 173 2.75e+01 1ex2A 189 2.81e+01 1ex2A c.51.4.2 33225 1vraB 215 2.89e+01 1o7jA 327 3.00e+01 c.88.1.1 81140 1mwvA 714 3.05e+01 a.93.1.3,a.93.1.3 85161,85162 1in6A 334 3.06e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1tzzA 392 3.16e+01 1bvoA 175 3.19e+01 1a3qA b.2.5.3 22457 1zxxA 319 3.21e+01 1x9iA 302 3.22e+01 1ktbA 405 3.32e+01 b.71.1.1,c.1.8.1 72960,72961 1zmoA 244 3.36e+01 1pjr 724 3.38e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1tcvA 287 3.39e+01 1ornA 226 3.39e+01 a.96.1.1 87342 1ltzA 297 3.42e+01 d.178.1.1 74254 1s2dA 167 3.45e+01 c.23.14.1 98377 1e9rA 437 3.48e+01 c.37.1.11 64827 451c 82 3.52e+01 451c a.3.1.1 15904 1twfF 155 3.53e+01 1gen 218 3.53e+01 1gen b.66.1.1 27536 1cy5A 97 3.55e+01 1cy5A a.77.1.3 18430 2ga9A 297 3.58e+01 1n1bA 549 3.63e+01 a.102.4.1,a.128.1.3 79799,79800 1x0pA 143 3.68e+01 2gmyA 153 3.69e+01 1vcoA 550 3.70e+01 c.23.16.1,c.37.1.10 108508,108509 1i24A 404 3.72e+01 c.2.1.2 83663 1ixkA 315 3.73e+01 c.66.1.38 90716 1tz9A 367 3.83e+01 c.1.15.6 107466 1ej0A 180 3.84e+01 1ej0A c.66.1.2 34179 1aba 87 3.85e+01 1aba c.47.1.1 32760 1vyrA 364 3.94e+01 c.1.4.1 108906 1l0wA 580 3.96e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1ur4A 399 4.02e+01 1v4vA 376 4.05e+01 c.87.1.3 100313 1ua7A 422 4.06e+01 b.71.1.1,c.1.8.1 107759,107760 1uanA 227 4.08e+01 c.134.1.1 99135 1vemA 516 4.10e+01 1h32A 261 4.10e+01 a.3.1.8,a.3.1.8 76618,76619 8abp 306 4.19e+01 8abp c.93.1.1 35647 1jdc 429 4.20e+01 1jdc b.71.1.1,c.1.8.1 27789,28776 1zk4A 251 4.25e+01 1vggA 161 4.27e+01 1xknA 355 4.33e+01 1r7aA 504 4.35e+01 b.71.1.1,c.1.8.1 97192,97193 1xjvA 294 4.37e+01 1gox 370 4.41e+01 1gox c.1.4.1 28607 1tx2A 297 4.48e+01 c.1.21.1 107420 2feaA 236 4.48e+01 1wf3A 301 4.49e+01 1ohtA 215 4.51e+01 d.118.1.1 87036 1nrlA 316 4.52e+01 a.123.1.1 92091 1rxdA 159 4.60e+01 1w36B 1180 4.68e+01 1qwoA 442 4.70e+01 c.60.1.2 104620 1bf2 750 4.76e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 2c1iA 431 4.79e+01 1y8tA 324 4.87e+01 1npyA 271 4.89e+01 c.2.1.7,c.58.1.5 85995,85996 1om4A 422 4.93e+01 d.174.1.1 87067 1nszA 347 4.99e+01 b.30.5.4 80724 1rtqA 299 5.03e+01 c.56.5.4 97819 1rqbA 539 5.04e+01 a.5.7.2,c.1.10.5 105057,105058 1f0xA 571 5.05e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1jigA 146 5.12e+01 a.25.1.1 71685 1lhpA 312 5.17e+01 c.72.1.5 77960 1dbwA 126 5.18e+01 1dbwA c.23.1.1 31095 1pmmA 466 5.21e+01 c.67.1.6 94901 2fokA 579 5.23e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 2aeeA 211 5.30e+01 1yixA 265 5.34e+01 1okgA 373 5.35e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1hn0A 1021 5.36e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1mtyD 512 5.37e+01 1mhyD a.25.1.2 16742 1kolA 398 5.45e+01 b.35.1.2,c.2.1.1 77474,77475 1m4rA 151 5.48e+01 a.26.1.3 84799 1ad2 228 5.48e+01 1ad2 e.24.1.1 43353 1u24A 337 5.48e+01 1aky 221 5.50e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1vmfA 145 5.61e+01 2ptd 298 5.61e+01 2plc c.1.18.2 29605 1txoA 237 5.66e+01 1ub0A 258 5.68e+01 c.72.1.2 88394 1qy5A 269 5.68e+01 d.122.1.1 96573 1geeA 261 5.71e+01 c.2.1.2 90509 2fo3A 125 5.73e+01 1csh 435 5.78e+01 1csh a.103.1.1 18880 1o7zA 77 5.79e+01 d.9.1.1 86660 1g5bA 221 5.81e+01 1g5bA d.159.1.3 60261 2gshA 414 5.81e+01 1ki9A 192 5.90e+01 c.37.1.1 84404 1n97A 389 5.92e+01 a.104.1.1 80335 1djxA 624 5.94e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 2bbsA 290 5.96e+01 1yal 218 5.99e+01 1cs8A d.3.1.1 37025 1bdb 277 6.05e+01 1bdb c.2.1.2 29874 1cvl 319 6.06e+01 1cvl c.69.1.18 34786 1dkuA 317 6.09e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1tqyB 415 6.09e+01 c.95.1.1,c.95.1.1 107247,107248 1u84A 90 6.11e+01 2c5uA 375 6.11e+01 1gnxA 479 6.17e+01 c.1.8.4 76241 1bli 483 6.19e+01 1bli b.71.1.1,c.1.8.1 27715,28702 1oi2A 366 6.20e+01 c.119.1.2 103802 2bsfA 176 6.22e+01 1mqeA 207 6.24e+01 d.113.1.1 91394 1w4vA 119 6.24e+01 1o3uA 135 6.29e+01 a.24.16.3 86615 1vd5A 377 6.35e+01 a.102.1.7 108518 1vp4A 425 6.36e+01 1wyuB 474 6.36e+01 1z7gA 217 6.36e+01 1wv2A 265 6.37e+01 1sf8A 126 6.38e+01 d.271.1.1 105472 1kb9D 246 6.42e+01 a.3.1.3,f.23.11.1 77317,77318 1xm7A 195 6.44e+01 1q7fA 286 6.48e+01 b.68.9.1 96036 2ew8A 249 6.59e+01 1jk7A 323 6.65e+01 1auiA d.159.1.3 63144 2ff4A 388 6.67e+01 2btzA 394 6.72e+01 1e43A 483 6.73e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1vcvA 226 6.77e+01 1vkyA 347 6.83e+01 e.53.1.1 108696 1f8mA 429 6.86e+01 1dquA c.1.12.7 29315 2cc0A 195 6.86e+01 1ggzA 148 6.91e+01 a.39.1.5 70176 1gd0A 122 6.98e+01 1dptA d.80.1.3 39834 1qxyA 252 7.03e+01 d.127.1.1 96565 1nuyA 337 7.04e+01 e.7.1.1 86213 2cfqA 417 7.23e+01 1eswA 500 7.41e+01 1cwyA c.1.8.1 59500 1zbsA 291 7.43e+01 2c2aA 258 7.50e+01 1vpjA 192 7.57e+01 1wb0A 445 7.57e+01 1vs0A 310 7.61e+01 1e5mA 416 7.62e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1w5qA 337 7.66e+01 1t0iA 191 7.83e+01 c.23.5.4 106209 1wwjA 105 7.90e+01 2czdA 208 7.92e+01 2aioA 269 7.92e+01 1gx3A 284 8.02e+01 d.3.1.5 70678 1x7vA 99 8.02e+01 d.58.4.11 109501 1km4A 247 8.02e+01 c.1.2.3 72740 1pujA 282 8.10e+01 c.37.1.8 88294 2c4nA 250 8.10e+01 1chmA 401 8.15e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1xi3A 215 8.17e+01 c.1.3.1 109601 1vlpA 441 8.19e+01 d.41.2.2,d.41.2.3 108840,108841 1reqB 637 8.24e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2gwgA 350 8.27e+01 1xeuA 263 8.34e+01 1wckA 220 8.48e+01 1vmaA 306 8.50e+01 a.24.13.1,c.37.1.10 108887,108888 2fcr 173 8.51e+01 1rcf c.23.5.1 31151 1bw0A 416 8.53e+01 1bw0A c.67.1.1 34385 1zl0A 311 8.56e+01 1pzxA 289 8.64e+01 c.119.1.1 95484 1ig3A 263 8.71e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 1ynpA 317 8.72e+01 1pv5A 264 8.76e+01 d.251.1.1 95150