Best Alignments for T0289

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vjvA/T0289-1vjvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjvA/T0289-1vjvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6206e+002.34e-04 d.3.1.9
1hpi/T0289-1hpi-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hpi/T0289-1hpi-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.0272e+005.60e-02 1ckuA g.35.1.1
1jsdA/T0289-1jsdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jsdA/T0289-1jsdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6649e+007.04e-02 b.19.1.2
1eu3A/T0289-1eu3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1eu3A/T0289-1eu3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.9810e+004.39e-03 1an8 b.40.2.2
d.15.6.1
1gy7A/T0289-1gy7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gy7A/T0289-1gy7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1430e+011.31e-01 d.17.4.2
1n7oA/T0289-1n7oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1n7oA/T0289-1n7oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1515e+011.81e-05 a.102.3.2
b.24.1.1
b.30.5.2
1c8uA/T0289-1c8uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c8uA/T0289-1c8uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2489e+018.58e-04 1c8uA d.38.1.3
d.38.1.3
1vhsA/T0289-1vhsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vhsA/T0289-1vhsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2643e+012.84e-01 d.108.1.1
1o54A/T0289-1o54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o54A/T0289-1o54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3879e+011.51e-05 c.66.1.13
1el6A/T0289-1el6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1el6A/T0289-1el6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4055e+012.01e-03 1el6B d.182.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001