CreatePredAlphaCost pred_alpha2k alpha11 T0288.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0288.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0288.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 20 near_backbone 10 way_back 5 dry5 20 dry6.5 25 dry8 15 dry12 5 \ phobic_fit 10 \ sidechain 7 \ n_ca_c 10 bad_peptide 10 \ bystroff 5 \ soft_clashes 90 backbone_clashes 2 \ break 250 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 30 \ hbond_geom_beta_pair 50 \ maybe_metal 1.0 \ missing_atoms 1 # from decoys/tr288.sheets # SheetConstraint P4 K11 N86 G79 hbond G5 1 SheetConstraint S1 K11 Q89 G79 hbond G5 1 # extended SheetConstraint I21 G22 I33 Y32 hbond G22 1 Hbond Y27.N G24.0 0.5 # hang onto hairpin SheetConstraint D52 T55 K87 H84 hbond E53 1 SheetConstraint T55 V57 I62 R60 hbond V57 1