Best Alignments for T0288

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1g9oA/T0288-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g9oA/T0288-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9969e-157.05e-51 1pdr b.36.1.1
2fe5A/T0288-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fe5A/T0288-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3890e-108.37e-47
1tp5A/T0288-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tp5A/T0288-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6650e-102.94e-47
2fcfA/T0288-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcfA/T0288-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2996e-093.05e-46
2f0aA/T0288-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f0aA/T0288-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7147e-083.06e-38
1wf7A/T0288-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wf7A/T0288-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2280e-083.89e-35
1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0518e-086.06e-25 1fc6A b.36.1.3
c.14.1.2
2f5yA/T0288-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f5yA/T0288-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2371e-078.69e-40
1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.2112e-064.33e-33 1i16 b.36.1.2
1n99A/T0288-1n99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1n99A/T0288-1n99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7144e-052.77e-42 b.36.1.1
b.36.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001