Best Alignments for T0288

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2fe5A/T0288-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fe5A/T0288-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6223e-146.09e-46
1g9oA/T0288-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g9oA/T0288-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3988e-145.39e-48 1pdr b.36.1.1
1tp5A/T0288-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tp5A/T0288-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2853e-143.49e-44
2fcfA/T0288-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcfA/T0288-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6546e-131.03e-42
1n99A/T0288-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1n99A/T0288-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3769e-113.67e-38 b.36.1.1
b.36.1.1
2f0aA/T0288-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f0aA/T0288-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5845e-113.64e-35
1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6395e-114.33e-33 1i16 b.36.1.2
1wf7A/T0288-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wf7A/T0288-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7447e-111.86e-33
2f5yA/T0288-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f5yA/T0288-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7756e-102.92e-38
1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3068e-096.06e-25 1fc6A b.36.1.3
c.14.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001