Best Alignments for T0288

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1g9oA/T0288-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g9oA/T0288-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1274e-178.77e-46 1pdr b.36.1.1
1fc6A/T0288-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fc6A/T0288-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5815e-081.84e-21 1fc6A b.36.1.3
c.14.1.2
2fcfA/T0288-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcfA/T0288-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9156e+009.12e-43
1tp5A/T0288-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tp5A/T0288-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1521e+001.41e-44
2fneA/T0288-2fneA-t06-global-adpstyle1.a2m 2fneA/T0288-2fneA-t06-global-adpstyle1.al 9.0407e+002.52e-23
2fe5A/T0288-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fe5A/T0288-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3852e+006.37e-44
1zokA/T0288-1zokA-t06-global-adpstyle1.a2m 1zokA/T0288-1zokA-t06-global-adpstyle1.al 1.0242e+012.52e-23
2bygA/T0288-2bygA-t06-global-adpstyle1.a2m 2bygA/T0288-2bygA-t06-global-adpstyle1.al 1.0689e+012.52e-23
1wfvA/T0288-1wfvA-t06-global-adpstyle1.a2m 1wfvA/T0288-1wfvA-t06-global-adpstyle1.al 1.1340e+011.15e-22
1vj6A/T0288-1vj6A-t06-global-adpstyle1.a2m 1vj6A/T0288-1vj6A-t06-global-adpstyle1.al 1.1467e+012.52e-23

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001