# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 1.51e-19 1pdr b.36.1.1 60400 1q3oA 109 1.11e-17 b.36.1.1 95700 1ihjA 98 2.70e-17 1pdr b.36.1.1 62382 1mfgA 95 3.26e-16 b.36.1.1 79043 1qauA 112 1.24e-15 1qauA b.36.1.1 24779 1r6jA 82 2.55e-14 b.36.1.1 97151 1fc6A 388 7.25e-09 1fc6A b.36.1.3,c.14.1.2 64738,64739 1qb7A 236 1.39e-02 1qb7A c.61.1.1 34087 1g2qA 187 5.66e-02 c.61.1.1 65117 1cliA 345 1.08e-01 1cliA d.79.4.1,d.139.1.1 39816,41459 1fxlA 167 1.12e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1t6t1 118 1.23e-01 1yg9A 330 4.31e-01 1n6aA 259 4.59e-01 b.76.2.1,b.85.7.1 80121,80122 1fsgA 233 6.78e-01 1qk3A c.61.1.1 34029 1fjrA 195 8.42e-01 1fjrA b.102.1.1 59855 1h3gA 601 1.12e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1q52A 314 1.55e+00 c.14.1.3 95846 1y0bA 197 1.68e+00 1qqqA 264 1.70e+00 1bkpA d.117.1.1 40931 1r62A 160 2.09e+00 d.122.1.3 104816 1rwrA 301 2.82e+00 b.80.1.11 97990 2arcA 164 3.48e+00 2arcA b.82.4.1 28148 1h72C 296 3.49e+00 d.14.1.5,d.58.26.1 60712,60713 1snrA 341 4.17e+00 b.6.1.3,b.6.1.3 105823,105824 1g57A 217 4.34e+00 1g57A d.115.1.2 60253 1i52A 236 4.48e+00 1i52A c.68.1.13 61767 1cl1A 395 4.88e+00 1cl2A c.67.1.3 34395 1gjjA 168 4.89e+00 a.140.1.1,a.140.1.1 83291,83292 1i1wA 303 5.13e+00 c.1.8.3 76732 1nthA 458 5.44e+00 c.1.25.1 80730 1wlgA 299 5.94e+00 1se8A 301 6.47e+00 b.40.4.3 105448 1earA 147 7.16e+00 b.107.1.1,d.58.38.1 64875,64876 1bx4A 345 7.60e+00 1bx4A c.72.1.1 34935 1h05A 146 7.62e+00 c.23.13.1 76433 1xdnA 277 8.02e+00 1cruA 454 8.35e+00 1c9uA b.68.2.1 27617 1vkpA 383 8.42e+00 d.126.1.6 108686 1m65A 245 8.70e+00 c.6.3.1 84847 1b25A 619 9.01e+00 1b25A a.110.1.1,d.152.1.1 19044,41796 1bg4 302 1.00e+01 1taxA c.1.8.3 28806 1hgxA 183 1.09e+01 1tc1A c.61.1.1 34027 1ecfA 504 1.16e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1oq1A 223 1.25e+01 b.29.1.17 93408 1h70A 255 1.26e+01 1h70A d.126.1.3 60711 1h8dH 260 1.26e+01 5ptp 1fm0E 150 1.29e+01 1fmaE d.41.5.1 38629 1h3qA 140 1.54e+01 d.110.4.3 76652 1jykA 254 1.62e+01 c.68.1.13 67458 1xkzA 255 1.63e+01 1eyqA 222 1.64e+01 1eypA d.36.1.1 38534 1koe 172 1.72e+01 1koe d.169.1.5 42448 1dkuA 317 1.79e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1obfO 335 1.79e+01 c.2.1.3,d.81.1.1 86768,86769 1gadO 330 1.81e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1g31A 111 1.82e+01 1g31A b.35.1.1 24656 1g0sA 209 1.84e+01 1g0sA d.113.1.1 60187 1rutX 188 1.90e+01 1vcaA 202 1.91e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1cg2A 393 1.94e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1a2yB 116 2.03e+01 1gc1H b.1.1.1 19927 1si6X 282 2.10e+01 1auoA 218 2.12e+01 1auoA c.69.1.14 34716 1yb3A 175 2.20e+01 1yc5A 246 2.28e+01 2g7jA 124 2.32e+01 1a8y 367 2.49e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1vimA 200 2.50e+01 c.80.1.3 100758 1fdr 248 2.58e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1at0 145 2.66e+01 1at0 b.86.1.1 28374 1dekA 241 2.68e+01 1dekA c.37.1.1 31842 1uylA 236 2.69e+01 d.122.1.1 108147 1ep3B 262 2.69e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1fr3A 67 2.76e+01 1fr3A b.40.6.1 25436 1dljA 402 2.78e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1mkkA 96 2.84e+01 g.17.1.1 79240 1eazA 125 2.85e+01 b.55.1.1 70113 1din 236 2.89e+01 1din c.69.1.9 34682 1p99A 295 3.30e+01 c.94.1.1 94384 1p5vB 147 3.30e+01 b.2.3.2 87814 1xttA 216 3.41e+01 1nepA 130 3.43e+01 b.1.18.7 80440 1ako 268 3.48e+01 1ako d.151.1.1 41779 1kicA 339 3.54e+01 c.70.1.1 72510 1dq3A 454 3.58e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1vqqA 646 3.64e+01 1fl2A 310 3.69e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1dcfA 136 3.77e+01 1dcfA c.23.1.2 31124 1i27A 73 3.83e+01 1i27A a.4.5.30 61555 1f9zA 135 3.97e+01 1qipA d.32.1.1 38484 1gk8A 475 3.99e+01 c.1.14.1,d.58.9.1 65234,65235 1k1eA 180 4.00e+01 c.108.1.5 67995 1e87A 118 4.05e+01 1b6e d.169.1.1 42327 1dg6A 191 4.09e+01 1d4vB b.22.1.1 23883 1nqzA 194 4.11e+01 d.113.1.1 86077 1e5kA 201 4.11e+01 1fr9A c.68.1.8 34578 1fltX 95 4.12e+01 1fltX b.1.1.4 21765 1bd0A 388 4.15e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1zceA 155 4.18e+01 1tif 78 4.20e+01 1tif d.15.8.1 37836 1behA 187 4.20e+01 1a44 b.17.1.1 23700 1lkkA 105 4.24e+01 1lckA d.93.1.1 40412 1s5uA 138 4.24e+01 d.38.1.1 98573 1ef8A 261 4.25e+01 1ef8A c.14.1.3 30921 1wwzA 159 4.27e+01 1g8sA 230 4.35e+01 c.66.1.3 90507 1f1xA 322 4.45e+01 d.32.1.3,d.32.1.3 83208,83209 1iukA 140 4.46e+01 c.2.1.8 83712 1kw4A 89 4.47e+01 a.60.1.2 73077 1h9dB 134 4.49e+01 2jhbA b.54.1.1 60822 1qmvA 197 4.57e+01 1qq2A c.47.1.10 33066 1llnA 262 4.62e+01 d.165.1.1 84625 1n0qA 93 4.70e+01 k.37.1.1 79754 1avaC 181 4.75e+01 1avaC b.42.4.1 25604 1eo6A 117 4.79e+01 1eo6A d.15.1.3 37609 1csh 435 4.82e+01 1csh a.103.1.1 18880 1zelA 298 5.00e+01 1g4mA 393 5.04e+01 b.1.18.11,b.1.18.11 65143,65144 1bdfA 235 5.11e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1fmtA 314 5.12e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1rcqA 357 5.17e+01 b.49.2.2,c.1.6.1 104882,104883 1dk0A 188 5.19e+01 1b2vA d.35.1.1 38530 1deuA 277 5.24e+01 1theB d.3.1.1 37085 1hjrA 158 5.28e+01 1hjrA c.55.3.6 33727 1eaxA 241 5.30e+01 b.47.1.2 64889 1e3dA 266 5.32e+01 2frvA e.19.1.1 59188 1ssxA 198 5.34e+01 b.47.1.1 98978 2sli 679 5.36e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1bxvA 91 5.38e+01 1aac b.6.1.1 22875 1iwlA 182 5.41e+01 b.125.1.1 83757 2pvbA 107 5.47e+01 1a75A a.39.1.4 17205 1ow1A 195 5.48e+01 b.131.1.3 93625 1ta8A 332 5.54e+01 1amm 174 5.58e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1l7aA 318 5.62e+01 c.69.1.25 77772 1h65A 270 5.64e+01 c.37.1.8 65640 1sfdA 105 5.65e+01 b.6.1.1 105480 1w99A 558 5.66e+01 1ok0A 74 5.66e+01 b.5.1.1 93191 1d7oA 297 5.68e+01 1enp c.2.1.2 29907 1yy6A 155 5.75e+01 1eceA 358 5.79e+01 1eceA c.1.8.3 28813 1k4iA 233 5.86e+01 d.115.1.2 72056 1pqhA 143 5.96e+01 b.52.2.1 95017 1sw5A 275 6.04e+01 c.94.1.1 106069 1oxdA 227 6.07e+01 d.22.1.1 93687 1ts9A 102 6.10e+01 1hztA 190 6.12e+01 1i9aA d.113.1.2 61459 1fit 147 6.15e+01 1fit d.13.1.1 37499 1fxkC 133 6.27e+01 1fxkC a.2.5.1 15702 1gky 187 6.34e+01 1gky c.37.1.1 31839 1vybA 238 6.39e+01 d.151.1.1 108897 1dmgA 225 6.43e+01 1dmgA c.22.1.1 31036 1gpjA 404 6.54e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1p4cA 380 6.78e+01 c.1.4.1 94100 1nulA 152 6.84e+01 1nulA c.61.1.1 34011 1g8lA 411 6.86e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1jubA 311 6.92e+01 c.1.4.1 90908 1qh5A 260 6.95e+01 1qh5A d.157.1.2 42057 1oqvA 192 6.96e+01 d.24.1.2 87320 1f1gA 154 6.98e+01 b.1.8.1 76153 1c44A 123 7.06e+01 1qndA d.106.1.1 40795 1pvmA 184 7.07e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1kolA 398 7.09e+01 b.35.1.2,c.2.1.1 77474,77475 1bb9 115 7.10e+01 1bb9 b.34.2.1 24554 1f9yA 158 7.22e+01 d.58.30.1 83249 1a7j 290 7.25e+01 1a7j c.37.1.6 31952 1d4xG 126 7.35e+01 1d0nA d.109.1.1 59109 1fl0A 171 7.36e+01 1eujA b.40.4.4 25315 1bd3A 243 7.38e+01 1bd3A c.61.1.1 34098 1rk6A 496 7.41e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1g8aA 227 7.50e+01 c.66.1.3 90506 1k7cA 233 7.50e+01 c.23.10.4 68267 1egpA 45 7.50e+01 1egpA d.40.1.1 38561 1ojhA 65 7.58e+01 a.214.1.1 103976 1nar 290 7.65e+01 1nar c.1.8.5 28988 1iirA 415 7.70e+01 1iirA c.87.1.5 62453 1vpjA 192 7.72e+01 1uwfA 158 7.77e+01 1o8bA 219 8.04e+01 c.124.1.4,d.58.40.1 81180,81181 1m15A 357 8.06e+01 a.83.1.1,d.128.1.2 78368,78369 1rhcA 330 8.15e+01 c.1.16.3 97468 1g2bA 62 8.20e+01 1tud b.34.2.1 24488 2gkpA 167 8.29e+01 1k2eA 156 8.44e+01 d.113.1.1 72010 1pe9A 361 8.60e+01 b.80.1.1 94595 2ddrA 306 8.72e+01 1orc 71 8.74e+01 1orc a.35.1.2 17054 1chmA 401 8.82e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1oxxK 353 8.87e+01 b.40.6.3,c.37.1.12 93715,93716 1gtvA 214 8.91e+01 c.37.1.1 70537 1pz7A 204 8.95e+01 b.29.1.4 95405