# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 5.60e-17 1pdr b.36.1.1 60400 1ihjA 98 4.87e-16 1pdr b.36.1.1 62382 1q3oA 109 9.81e-15 b.36.1.1 95700 1qauA 112 1.42e-14 1qauA b.36.1.1 24779 1mfgA 95 1.48e-14 b.36.1.1 79043 1r6jA 82 4.40e-12 b.36.1.1 97151 1fc6A 388 4.49e-08 1fc6A b.36.1.3,c.14.1.2 64738,64739 1fm0E 150 3.90e-01 1fmaE d.41.5.1 38629 1cliA 345 4.59e-01 1cliA d.79.4.1,d.139.1.1 39816,41459 1cq3A 233 8.05e-01 1cq3A b.27.1.1 23923 1jhfA 202 1.02e+00 a.4.5.2,b.87.1.1 63057,63058 1rz2A 254 1.22e+00 b.100.1.1 105130 1p99A 295 1.51e+00 c.94.1.1 94384 1cruA 454 1.62e+00 1c9uA b.68.2.1 27617 1sw5A 275 1.79e+00 c.94.1.1 106069 1r62A 160 2.23e+00 d.122.1.3 104816 1t6t1 118 2.67e+00 1y0bA 197 2.79e+00 1oxxK 353 3.35e+00 b.40.6.3,c.37.1.12 93715,93716 1k4iA 233 3.54e+00 d.115.1.2 72056 1d3cA 686 4.38e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1h3gA 601 4.94e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1csh 435 4.99e+00 1csh a.103.1.1 18880 1eu1A 780 6.11e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1bx4A 345 6.25e+00 1bx4A c.72.1.1 34935 1kw4A 89 6.54e+00 a.60.1.2 73077 1dg6A 191 6.79e+00 1d4vB b.22.1.1 23883 1bw3 125 8.11e+00 1bw4 b.52.1.2 26899 1mzbA 136 8.49e+00 a.4.5.42 91497 1h6kA 757 8.53e+00 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1g7sA 594 8.75e+00 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1n0qA 93 9.01e+00 k.37.1.1 79754 1yg9A 330 9.99e+00 1tif 78 1.00e+01 1tif d.15.8.1 37836 1fxlA 167 1.01e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1f60A 458 1.09e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1koe 172 1.09e+01 1koe d.169.1.5 42448 1eyqA 222 1.14e+01 1eypA d.36.1.1 38534 1t9iA 163 1.14e+01 1a8y 367 1.15e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1aky 221 1.15e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1dxrH 258 1.16e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1se8A 301 1.25e+01 b.40.4.3 105448 1vlaA 150 1.25e+01 d.227.1.2 108735 1evlA 401 1.26e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1avaC 181 1.28e+01 1avaC b.42.4.1 25604 1h05A 146 1.28e+01 c.23.13.1 76433 1gjjA 168 1.30e+01 a.140.1.1,a.140.1.1 83291,83292 1a8l 226 1.46e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1brt 277 1.48e+01 1brt c.69.1.12 34699 1io0A 185 1.52e+01 c.10.1.1 76753 1oc7A 364 1.55e+01 c.6.1.1 86794 1qveA 126 1.62e+01 d.24.1.1 104594 1ebfA 358 1.68e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1iukA 140 1.69e+01 c.2.1.8 83712 1fo8A 343 1.80e+01 1foaA c.68.1.10 59927 1dvoA 152 1.81e+01 1dvoA a.136.1.1 19623 1wmaA 276 1.83e+01 1nz0A 118 1.88e+01 d.14.1.2 86433 1i9zA 347 2.03e+01 1i9yA d.151.1.2 62102 1ci9A 392 2.10e+01 e.3.1.1 64767 1xe0A 114 2.13e+01 1r6xA 395 2.18e+01 b.122.1.3,c.26.1.5 97167,97168 1cfzA 162 2.25e+01 1cfzA c.56.1.1 33754 1u8vA 490 2.33e+01 1dkuA 317 2.40e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1qb7A 236 2.43e+01 1qb7A c.61.1.1 34087 1syyA 346 2.43e+01 a.25.1.2 106126 1j24A 143 2.45e+01 c.52.1.20 84008 1at0 145 2.57e+01 1at0 b.86.1.1 28374 2arcA 164 2.68e+01 2arcA b.82.4.1 28148 1h70A 255 2.69e+01 1h70A d.126.1.3 60711 1i4jA 110 2.72e+01 d.55.1.1 76734 1qw2A 102 2.78e+01 d.249.1.1 96456 1rrmA 386 2.82e+01 e.22.1.2 105081 1rm6A 769 2.83e+01 1ek6A 348 2.84e+01 1xel c.2.1.2 29800 1g3qA 237 2.89e+01 1hyqA c.37.1.10 60237 1rutX 188 2.95e+01 1earA 147 2.97e+01 b.107.1.1,d.58.38.1 64875,64876 1v5iB 76 3.02e+01 1vqqA 646 3.09e+01 1ecfA 504 3.10e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1am2 199 3.12e+01 1am2 b.86.1.2 28381 1fkqA 124 3.14e+01 3lzt d.2.1.2 36601 1vljA 407 3.19e+01 e.22.1.2 108832 1qmvA 197 3.20e+01 1qq2A c.47.1.10 33066 1xjvA 294 3.32e+01 1a2yB 116 3.32e+01 1gc1H b.1.1.1 19927 4uagA 437 3.33e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1exbA 332 3.34e+01 1qrqA c.1.7.1 28666 1oboA 169 3.34e+01 c.23.5.1 86776 1ji7A 89 3.54e+01 a.60.1.1 71682 1pvmA 184 3.55e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1c3pA 375 3.68e+01 1c3pA c.42.1.2 32606 1flmA 122 3.80e+01 1axj b.45.1.1 25747 1p5dX 463 3.81e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1nulA 152 3.84e+01 1nulA c.61.1.1 34011 1h3qA 140 3.87e+01 d.110.4.3 76652 1obfO 335 3.90e+01 c.2.1.3,d.81.1.1 86768,86769 1g5tA 196 4.08e+01 1g5rA c.37.1.11 32366 1f28A 297 4.13e+01 1bkpA d.117.1.1 59608 1ne9A 335 4.17e+01 d.108.1.4,d.108.1.4 91839,91840 1iibA 106 4.29e+01 1iibA c.44.2.1 32648 1d3vA 323 4.39e+01 1d3vA c.42.1.1 32559 1augA 215 4.43e+01 1a2zA c.56.4.1 33798 1zin 217 4.44e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1rwrA 301 4.46e+01 b.80.1.11 97990 1w99A 558 4.52e+01 1nnhA 294 4.54e+01 d.104.1.1 92005 1fxkC 133 4.54e+01 1fxkC a.2.5.1 15702 1dysA 348 4.60e+01 1bvwA c.6.1.1 30669 1oi2A 366 4.66e+01 c.119.1.2 103802 1gky 187 4.70e+01 1gky c.37.1.1 31839 1p1jA 533 4.79e+01 c.2.1.3,d.81.1.3 87687,87688 1mb3A 124 4.83e+01 c.23.1.1 78907 1fjgK 129 4.87e+01 1fjfK c.55.4.1 33733 1ctqA 166 4.97e+01 1ctqA c.37.1.8 31965 1h9oA 112 5.09e+01 1qadA d.93.1.1 60837 1eh8A 207 5.12e+01 1sfe a.4.2.1,c.55.7.1 16077,33752 1n4wA 504 5.13e+01 c.3.1.2,d.16.1.1 91676,91677 1fgkA 310 5.17e+01 1fgkA d.144.1.7 41693 1pe1A 267 5.20e+01 c.1.10.4 94591 1xvqA 175 5.25e+01 1q6zA 528 5.36e+01 1t6cA 315 5.46e+01 c.55.1.8,c.55.1.8 106558,106559 1a8o 70 5.47e+01 1a8o a.28.3.1 16953 1enfA 212 5.61e+01 3seb b.40.2.2,d.15.6.1 25198,37787 1xsvA 113 5.61e+01 1ghpA 258 5.63e+01 1btl e.3.1.1 60520 2ddrA 306 5.70e+01 2gk9A 426 5.73e+01 1ga8A 311 5.74e+01 1ga8A c.68.1.4 34516 1sfdA 105 5.77e+01 b.6.1.1 105480 1hztA 190 5.83e+01 1i9aA d.113.1.2 61459 1gtmA 419 5.96e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1cyx 205 5.96e+01 1cyx b.6.1.2 23023 1xdnA 277 6.12e+01 1gr0A 367 6.18e+01 c.2.1.3,d.81.1.3 70379,70380 1jykA 254 6.25e+01 c.68.1.13 67458 1c44A 123 6.35e+01 1qndA d.106.1.1 40795 1rm6B 324 6.42e+01 1ojhA 65 6.58e+01 a.214.1.1 103976 1wl4A 397 6.59e+01 1ga6A 372 6.65e+01 1ga1A c.41.1.2 32556 1b65A 375 6.68e+01 1b65A d.154.1.1 42020 1bwwA 109 6.73e+01 8fabA b.1.1.1 20518 1hbkA 94 7.08e+01 1aca a.11.1.1 60887 1fr3A 67 7.10e+01 1fr3A b.40.6.1 25436 1byrA 155 7.14e+01 1byrA d.136.1.1 41450 1st9A 143 7.15e+01 c.47.1.10 98987 1ccwA 137 7.38e+01 1be1 c.23.6.1 31238 1dpsA 167 7.41e+01 1dpsA a.25.1.1 16716 1ceo 343 7.57e+01 1ceo c.1.8.3 28808 1s5aA 150 7.67e+01 d.17.4.10 98525 1n62C 288 7.75e+01 d.87.2.1,d.145.1.3 80094,80095 1a53 247 7.79e+01 1a53 c.1.2.4 28564 1g2hA 61 7.79e+01 1g2hA a.4.1.12 60224 1yllA 200 7.81e+01 1aj2 282 7.84e+01 1aj2 c.1.21.1 29665 1eu8A 409 7.87e+01 1eu8A c.94.1.1 59502 1vc4A 254 7.89e+01 c.1.2.4 100557 1ug6A 431 8.00e+01 c.1.8.4 88490 1dun 134 8.10e+01 1dun b.85.4.1 28371 2g7jA 124 8.12e+01 1gmuA 143 8.15e+01 b.107.1.1,d.58.38.1 65335,65336 1t1vA 93 8.20e+01 c.47.1.14 106278 1f8mA 429 8.22e+01 1dquA c.1.12.7 29315 1nykA 165 8.22e+01 b.33.1.1 86408 1a9xA 1058 8.29e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1yy6A 155 8.29e+01 1ddgA 374 8.39e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1x8vA 455 8.43e+01 1h8eA 510 8.52e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1eaxA 241 8.53e+01 b.47.1.2 64889 1hgxA 183 8.54e+01 1tc1A c.61.1.1 34027 1vybA 238 8.61e+01 d.151.1.1 108897 1nu4A 97 8.61e+01 d.58.7.1 80731 1b43A 340 8.67e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1yb3A 175 8.69e+01 1h5rA 293 8.80e+01 c.68.1.6 65623 1fp2A 352 8.80e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1fp1D 372 8.80e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1he1A 135 8.84e+01 1he1A a.24.11.1 16641 1nkiA 135 8.90e+01 d.32.1.2 91941