# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 1.61e-20 1pdr b.36.1.1 60400 1q3oA 109 8.14e-19 b.36.1.1 95700 1ihjA 98 1.99e-18 1pdr b.36.1.1 62382 1mfgA 95 2.57e-16 b.36.1.1 79043 1qauA 112 3.41e-16 1qauA b.36.1.1 24779 1r6jA 82 2.04e-14 b.36.1.1 97151 1fc6A 388 1.40e-08 1fc6A b.36.1.3,c.14.1.2 64738,64739 1qb7A 236 8.41e-02 1qb7A c.61.1.1 34087 1yg9A 330 1.01e-01 1fxlA 167 1.63e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1cliA 345 2.66e-01 1cliA d.79.4.1,d.139.1.1 39816,41459 1eu1A 780 4.18e-01 1dmr b.52.2.2,c.81.1.1 26903,35311 1n6aA 259 4.46e-01 b.76.2.1,b.85.7.1 80121,80122 1t6t1 118 7.25e-01 1bx4A 345 8.10e-01 1bx4A c.72.1.1 34935 1h72C 296 1.28e+00 d.14.1.5,d.58.26.1 60712,60713 1se8A 301 1.28e+00 b.40.4.3 105448 1g2qA 187 1.34e+00 c.61.1.1 65117 1q52A 314 1.51e+00 c.14.1.3 95846 1xdnA 277 2.08e+00 1fdr 248 2.57e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1csh 435 2.94e+00 1csh a.103.1.1 18880 1r62A 160 3.15e+00 d.122.1.3 104816 1fjrA 195 3.37e+00 1fjrA b.102.1.1 59855 1a8y 367 4.30e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1rwrA 301 4.34e+00 b.80.1.11 97990 1h3gA 601 4.54e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1fm0E 150 5.86e+00 1fmaE d.41.5.1 38629 1koe 172 6.91e+00 1koe d.169.1.5 42448 2arcA 164 8.08e+00 2arcA b.82.4.1 28148 1fr3A 67 8.56e+00 1fr3A b.40.6.1 25436 1cruA 454 8.58e+00 1c9uA b.68.2.1 27617 1cq3A 233 8.81e+00 1cq3A b.27.1.1 23923 1g57A 217 8.90e+00 1g57A d.115.1.2 60253 1vcaA 202 8.93e+00 1vcaA b.1.1.3,b.1.1.4 21649,21685 1ecfA 504 8.95e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 1ako 268 9.77e+00 1ako d.151.1.1 41779 1fsgA 233 9.78e+00 1qk3A c.61.1.1 34029 1obfO 335 1.00e+01 c.2.1.3,d.81.1.1 86768,86769 1h3qA 140 1.01e+01 d.110.4.3 76652 1eaxA 241 1.02e+01 b.47.1.2 64889 1ccwA 137 1.05e+01 1be1 c.23.6.1 31238 1nthA 458 1.09e+01 c.1.25.1 80730 1earA 147 1.12e+01 b.107.1.1,d.58.38.1 64875,64876 1sw5A 275 1.12e+01 c.94.1.1 106069 1vqqA 646 1.20e+01 1tif 78 1.29e+01 1tif d.15.8.1 37836 1bu6O 501 1.36e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1snrA 341 1.37e+01 b.6.1.3,b.6.1.3 105823,105824 1b25A 619 1.37e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1qqqA 264 1.44e+01 1bkpA d.117.1.1 40931 1amm 174 1.47e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1w99A 558 1.56e+01 1gky 187 1.63e+01 1gky c.37.1.1 31839 1h65A 270 1.63e+01 c.37.1.8 65640 1eyqA 222 1.71e+01 1eypA d.36.1.1 38534 1y0bA 197 1.72e+01 1pz7A 204 1.77e+01 b.29.1.4 95405 1m65A 245 1.79e+01 c.6.3.1 84847 1mkkA 96 1.80e+01 g.17.1.1 79240 1f28A 297 1.83e+01 1bkpA d.117.1.1 59608 1k5nB 100 1.83e+01 b.1.1.2 77268 1gv9A 260 1.95e+01 b.29.1.13 70596 1qmvA 197 1.96e+01 1qq2A c.47.1.10 33066 1fxkC 133 2.10e+01 1fxkC a.2.5.1 15702 1brt 277 2.15e+01 1brt c.69.1.12 34699 1g8aA 227 2.18e+01 c.66.1.3 90506 1g5bA 221 2.19e+01 1g5bA d.159.1.3 60261 1j24A 143 2.20e+01 c.52.1.20 84008 1ojhA 65 2.26e+01 a.214.1.1 103976 1llnA 262 2.28e+01 d.165.1.1 84625 1jykA 254 2.30e+01 c.68.1.13 67458 1f9zA 135 2.32e+01 1qipA d.32.1.1 38484 1g6sA 427 2.34e+01 1eps d.68.2.2 39584 1ef8A 261 2.46e+01 1ef8A c.14.1.3 30921 1n0qA 93 2.47e+01 k.37.1.1 79754 1dg6A 191 2.49e+01 1d4vB b.22.1.1 23883 1h6kZ 98 2.52e+01 d.58.7.1 60686 1x8vA 455 2.52e+01 1cfzA 162 2.52e+01 1cfzA c.56.1.1 33754 1at0 145 2.59e+01 1at0 b.86.1.1 28374 1e5kA 201 2.66e+01 1fr9A c.68.1.8 34578 1oq1A 223 2.67e+01 b.29.1.17 93408 1sfdA 105 2.79e+01 b.6.1.1 105480 1wl4A 397 2.86e+01 1nepA 130 2.87e+01 b.1.18.7 80440 1vybA 238 2.92e+01 d.151.1.1 108897 1gpjA 404 3.09e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1wlgA 299 3.09e+01 1h05A 146 3.11e+01 c.23.13.1 76433 1i52A 236 3.14e+01 1i52A c.68.1.13 61767 1auoA 218 3.18e+01 1auoA c.69.1.14 34716 1fmtA 314 3.22e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1gmuA 143 3.25e+01 b.107.1.1,d.58.38.1 65335,65336 1yb3A 175 3.53e+01 1h70A 255 3.56e+01 1h70A d.126.1.3 60711 1f0xA 571 3.58e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1vkpA 383 3.58e+01 d.126.1.6 108686 1behA 187 3.62e+01 1a44 b.17.1.1 23700 1f1gA 154 3.63e+01 b.1.8.1 76153 1dq3A 454 3.64e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1mfmA 153 3.67e+01 1mfmA b.1.8.1 22246 1dkuA 317 3.84e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1e7uA 961 3.87e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1kw4A 89 4.12e+01 a.60.1.2 73077 1si6X 282 4.26e+01 2bikB 313 4.27e+01 1a53 247 4.29e+01 1a53 c.1.2.4 28564 1bxvA 91 4.41e+01 1aac b.6.1.1 22875 1lkkA 105 4.47e+01 1lckA d.93.1.1 40412 1g3qA 237 4.51e+01 1hyqA c.37.1.10 60237 2ddrA 306 4.69e+01 1oi7A 288 4.77e+01 c.2.1.8,c.23.4.1 87049,87050 1yy6A 155 4.79e+01 1eceA 358 4.80e+01 1eceA c.1.8.3 28813 1e4iA 447 4.89e+01 1e70M c.1.8.4 59225 1a2yB 116 4.94e+01 1gc1H b.1.1.1 19927 2g7jA 124 5.02e+01 1g60A 260 5.05e+01 c.66.1.11 70151 1k1eA 180 5.10e+01 c.108.1.5 67995 1i27A 73 5.20e+01 1i27A a.4.5.30 61555 1nnhA 294 5.39e+01 d.104.1.1 92005 1q6zA 528 5.40e+01 1d7oA 297 5.45e+01 1enp c.2.1.2 29907 1h9dB 134 5.59e+01 2jhbA b.54.1.1 60822 1iirA 415 5.70e+01 1iirA c.87.1.5 62453 1nulA 152 5.70e+01 1nulA c.61.1.1 34011 1h9oA 112 5.74e+01 1qadA d.93.1.1 60837 1g8sA 230 5.78e+01 c.66.1.3 90507 1ayaA 101 5.94e+01 1qadA d.93.1.1 40460 1mb3A 124 5.95e+01 c.23.1.1 78907 1xkzA 255 6.08e+01 1bvoA 175 6.13e+01 1a3qA b.2.5.3 22457 1bg4 302 6.20e+01 1taxA c.1.8.3 28806 1sqsA 242 6.28e+01 c.23.5.5 98968 1fs0E 138 6.35e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1ep3B 262 6.35e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1cl1A 395 6.40e+01 1cl2A c.67.1.3 34395 1oxdA 227 6.66e+01 d.22.1.1 93687 1i1jA 108 6.74e+01 1i1jA b.34.2.1 61531 1n62B 809 6.78e+01 d.41.1.1,d.133.1.1 80092,80093 1ug6A 431 6.82e+01 c.1.8.4 88490 1e3dA 266 6.99e+01 2frvA e.19.1.1 59188 1byi 224 7.03e+01 1byi c.37.1.10 32199 1b0uA 262 7.04e+01 1b0uA c.37.1.12 32370 1dk0A 188 7.13e+01 1b2vA d.35.1.1 38530 1s5uA 138 7.19e+01 d.38.1.1 98573 1qh5A 260 7.22e+01 1qh5A d.157.1.2 42057 1acf 125 7.24e+01 3nul d.110.1.1 40882 1dqwA 267 7.48e+01 1dqwA c.1.2.3 28551 1fc4A 401 7.50e+01 1bs0A c.67.1.4 59760 1uwfA 158 7.52e+01 1i1wA 303 7.54e+01 c.1.8.3 76732 1dekA 241 7.55e+01 1dekA c.37.1.1 31842 1vimA 200 7.56e+01 c.80.1.3 100758 1eo6A 117 7.59e+01 1eo6A d.15.1.3 37609 1hztA 190 7.64e+01 1i9aA d.113.1.2 61459 1rhcA 330 7.69e+01 c.1.16.3 97468 1i9zA 347 7.71e+01 1i9yA d.151.1.2 62102 1yc5A 246 7.71e+01 1fehA 574 7.78e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1yllA 200 7.85e+01 1f60A 458 7.90e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1rk6A 496 8.00e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1bouA 139 8.10e+01 1bouA a.88.1.1 18521 1eny 268 8.18e+01 1eny c.2.1.2 29910 1eo1A 124 8.21e+01 1eo1A c.55.5.1 33739 1hjrA 158 8.32e+01 1hjrA c.55.3.6 33727 1zceA 155 8.38e+01 1iwlA 182 8.45e+01 b.125.1.1 83757 2sli 679 8.48e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1nn5A 215 8.59e+01 c.37.1.1 85892 1augA 215 8.64e+01 1a2zA c.56.4.1 33798 1rutX 188 8.86e+01 1bd0A 388 8.86e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1jhfA 202 8.86e+01 a.4.5.2,b.87.1.1 63057,63058 1ne9A 335 8.91e+01 d.108.1.4,d.108.1.4 91839,91840 1e4mM 501 8.95e+01 1e70M c.1.8.4 59226 1cjaA 342 8.96e+01 1cjaA d.144.1.3 41708