# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 1.97e-13 1pdr b.36.1.1 60400 1ihjA 98 9.68e-13 1pdr b.36.1.1 62382 1q3oA 109 8.61e-12 b.36.1.1 95700 1mfgA 95 8.99e-12 b.36.1.1 79043 1qauA 112 2.46e-11 1qauA b.36.1.1 24779 1r6jA 82 8.01e-09 b.36.1.1 97151 1fc6A 388 1.12e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1jhfA 202 4.37e-01 a.4.5.2,b.87.1.1 63057,63058 1cruA 454 4.67e-01 1c9uA b.68.2.1 27617 1sw5A 275 7.17e-01 c.94.1.1 106069 1p99A 295 1.33e+00 c.94.1.1 94384 1fxlA 167 1.93e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 1rm6A 769 2.52e+00 1bx4A 345 2.61e+00 1bx4A c.72.1.1 34935 1a8l 226 2.74e+00 1a8l c.47.1.2,c.47.1.2 32777,32778 1koe 172 3.44e+00 1koe d.169.1.5 42448 1xe0A 114 5.12e+00 1se8A 301 5.39e+00 b.40.4.3 105448 1h3qA 140 5.60e+00 d.110.4.3 76652 1dg6A 191 6.74e+00 1d4vB b.22.1.1 23883 1avaC 181 6.78e+00 1avaC b.42.4.1 25604 1pvmA 184 6.93e+00 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1j24A 143 7.03e+00 c.52.1.20 84008 1kw4A 89 8.41e+00 a.60.1.2 73077 1y7rA 133 9.37e+00 1gbs 185 1.06e+01 153l d.2.1.5 36986 1t6t1 118 1.57e+01 1r6xA 395 1.91e+01 b.122.1.3,c.26.1.5 97167,97168 1tif 78 1.94e+01 1tif d.15.8.1 37836 1obfO 335 2.02e+01 c.2.1.3,d.81.1.1 86768,86769 1a8y 367 2.05e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1bo4A 168 2.19e+01 1bo4A d.108.1.1 40798 1r62A 160 2.21e+01 d.122.1.3 104816 1ga8A 311 2.23e+01 1ga8A c.68.1.4 34516 1k4iA 233 2.30e+01 d.115.1.2 72056 1csh 435 2.31e+01 1csh a.103.1.1 18880 1dun 134 2.36e+01 1dun b.85.4.1 28371 1cliA 345 2.37e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1eo6A 117 2.41e+01 1eo6A d.15.1.3 37609 2arcA 164 2.42e+01 2arcA b.82.4.1 28148 1rz2A 254 2.43e+01 b.100.1.1 105130 1iukA 140 2.44e+01 c.2.1.8 83712 1xjvA 294 2.52e+01 1nu4A 97 2.52e+01 d.58.7.1 80731 1jboA 162 2.54e+01 a.1.1.3 84150 1a53 247 2.59e+01 1a53 c.1.2.4 28564 1ctqA 166 2.60e+01 1ctqA c.37.1.8 31965 1bw3 125 2.60e+01 1bw4 b.52.1.2 26899 1din 236 2.69e+01 1din c.69.1.9 34682 1gky 187 2.72e+01 1gky c.37.1.1 31839 1earA 147 2.91e+01 b.107.1.1,d.58.38.1 64875,64876 1ga6A 372 2.99e+01 1ga1A c.41.1.2 32556 1b43A 340 3.11e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1n0qA 93 3.11e+01 k.37.1.1 79754 1jy1A 464 3.14e+01 d.136.1.3,d.136.1.3 67438,67439 1a76 326 3.15e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1mb3A 124 3.24e+01 c.23.1.1 78907 1evlA 401 3.27e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1qf8A 182 3.31e+01 1qf8A g.41.4.1 45212 1p5vB 147 3.48e+01 b.2.3.2 87814 1h6kZ 98 3.73e+01 d.58.7.1 60686 1exbA 332 3.73e+01 1qrqA c.1.7.1 28666 1em2A 229 3.78e+01 1em2A d.129.3.2 41321 1x8vA 455 3.79e+01 1fkqA 124 3.82e+01 3lzt d.2.1.2 36601 1wubA 178 3.84e+01 1at0 145 3.92e+01 1at0 b.86.1.1 28374 1hztA 190 4.04e+01 1i9aA d.113.1.2 61459 1fadA 99 4.06e+01 1fadA a.77.1.2 18428 1ddgA 374 4.08e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1vlaA 150 4.19e+01 d.227.1.2 108735 1g9gA 629 4.19e+01 a.102.1.2 83279 1fo8A 343 4.21e+01 1foaA c.68.1.10 59927 1oflA 481 4.22e+01 b.80.1.4 103934 1a6cA 513 4.23e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1dqtA 117 4.29e+01 1ah1 b.1.1.1 20653 1tqjA 230 4.30e+01 c.1.2.2 107228 1ne9A 335 4.42e+01 d.108.1.4,d.108.1.4 91839,91840 1eh8A 207 4.43e+01 1sfe a.4.2.1,c.55.7.1 16077,33752 1b35C 282 4.43e+01 1b35C 1vkeA 133 4.48e+01 a.152.1.2 108650 1oboA 169 4.60e+01 c.23.5.1 86776 1s29A 92 4.65e+01 a.4.5.46 98373 1r7jA 95 4.68e+01 a.4.5.49 104836 1i4uA 181 4.88e+01 b.60.1.1 61732 1qw2A 102 4.89e+01 d.249.1.1 96456 1ej2A 181 4.90e+01 1f9aA c.26.1.3 59414 1c7kA 132 4.90e+01 1kuh d.92.1.1 59078 1kicA 339 4.93e+01 c.70.1.1 72510 1xdnA 277 5.22e+01 1fm0E 150 5.25e+01 1fmaE d.41.5.1 38629 1t9iA 163 5.28e+01 1ogiA 303 5.37e+01 b.43.4.2,c.25.1.1 92914,92915 1gca 309 5.45e+01 1gca c.93.1.1 35659 1rk6A 496 5.45e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1kgsA 225 5.48e+01 a.4.6.1,c.23.1.1 68596,68597 1vggA 161 5.50e+01 1dvoA 152 5.51e+01 1dvoA a.136.1.1 19623 1h6kA 757 5.55e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1vmeA 410 5.56e+01 c.23.5.1,d.157.1.3 108893,108894 1nulA 152 5.57e+01 1nulA c.61.1.1 34011 1hb6A 86 5.57e+01 a.11.1.1 70959 1nepA 130 5.63e+01 b.1.18.7 80440 1s5uA 138 5.69e+01 d.38.1.1 98573 1mk4A 157 5.69e+01 d.108.1.1 84979 1b8dA 164 5.72e+01 1cpcA a.1.1.3 15665 1yllA 200 5.88e+01 1dabA 539 5.98e+01 1dabA b.80.1.7 28049 1nvmA 345 6.12e+01 a.5.7.1,c.1.10.5 86249,86250 1cfzA 162 6.27e+01 1cfzA c.56.1.1 33754 1g8sA 230 6.28e+01 c.66.1.3 90507 1fjgQ 105 6.36e+01 1fjfQ b.40.4.5 25352 1byrA 155 6.49e+01 1byrA d.136.1.1 41450 1g3qA 237 6.54e+01 1hyqA c.37.1.10 60237 1h05A 146 6.65e+01 c.23.13.1 76433 1ow4A 129 6.71e+01 a.39.2.1 93628 1gp0A 143 6.74e+01 b.64.1.1 70300 1ockA 412 6.83e+01 c.117.1.1 86802 1ok7A 366 6.83e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1gr0A 367 7.08e+01 c.2.1.3,d.81.1.3 70379,70380 1ye8A 178 7.08e+01 1wvfA 520 7.19e+01 1fk5A 93 7.23e+01 1rzl a.52.1.1 59866 1nf9A 207 7.24e+01 c.33.1.3 85631 1rwzA 245 7.26e+01 d.131.1.2,d.131.1.2 98005,98006 1nlqA 108 7.33e+01 b.121.3.1 85853 1ucrA 78 7.52e+01 a.4.5.45 99188 1fxkC 133 7.59e+01 1fxkC a.2.5.1 15702 1bdb 277 7.67e+01 1bdb c.2.1.2 29874 1bby 69 7.69e+01 2bby a.4.5.15 16149 1suuA 312 7.83e+01 b.68.10.1 99006 1u84A 90 7.88e+01 1km4A 247 7.90e+01 c.1.2.3 72740 1hfoA 113 7.91e+01 d.80.1.3 61006 1rwhA 757 7.92e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1usgA 346 7.99e+01 c.93.1.1 99864 1acf 125 8.11e+01 3nul d.110.1.1 40882 1sg4A 260 8.12e+01 1hkfA 122 8.17e+01 b.1.1.1 83553 1fpzA 212 8.17e+01 1fpzA c.45.1.1 59976 1ne2A 200 8.25e+01 c.66.1.32 85586 1zin 217 8.31e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1dpe 507 8.37e+01 1dpe c.94.1.1 35799 1gqaA 130 8.38e+01 a.24.3.2 76275 1h2eA 207 8.44e+01 c.60.1.1 70857 2bikB 313 8.50e+01 1dlwA 116 8.51e+01 1dlyA a.1.1.1 14982 1o3uA 135 8.51e+01 a.24.16.3 86615 1fseA 74 8.64e+01 1fseA a.4.6.2 60000 2nlrA 234 8.66e+01 2nlrA b.29.1.11 24344 1qmvA 197 8.68e+01 1qq2A c.47.1.10 33066 1fhoA 119 8.80e+01 1fhoA b.55.1.1 26982 1k7iA 479 8.81e+01 b.80.7.1,d.92.1.6 77281,77282 1augA 215 8.97e+01 1a2zA c.56.4.1 33798