# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 3.53e-15 2fcfA 103 6.67e-15 1tp5A 119 8.37e-15 1be9A 119 1.51e-14 1pdr b.36.1.1 24774 1qavA 90 3.27e-14 1qauA b.36.1.1 24777 1g9oA 91 3.52e-14 1pdr b.36.1.1 60400 1n7eA 97 1.56e-13 b.36.1.1 91691 1ihjA 98 3.20e-13 1pdr b.36.1.1 62382 1l6oA 95 8.15e-13 b.36.1.1 84534 1n7fA 97 1.32e-12 b.36.1.1 91692 2f0aA 98 1.79e-12 1mfgA 95 1.90e-12 b.36.1.1 79043 1v5lA 103 3.18e-12 b.36.1.1 108378 1q3oA 109 3.40e-12 b.36.1.1 95700 1wf7A 103 5.41e-12 1qauA 112 1.02e-11 1qauA b.36.1.1 24779 1kwaA 88 4.72e-11 1kwaA b.36.1.1 24772 1nf3C 128 8.28e-11 b.36.1.1 85596 2f5yA 91 3.78e-10 1r6jA 82 2.81e-09 b.36.1.1 97151 1nteA 82 3.59e-09 b.36.1.1 86163 1fc6A 388 1.51e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 1.91e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 6.00e-05 1sotA 320 3.53e-03 b.36.1.4,b.47.1.1 105852,105853 1y8tA 324 7.99e-01 1jhfA 202 1.25e+00 a.4.5.2,b.87.1.1 63057,63058 2bh4X 134 1.36e+00 1fxlA 167 1.81e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 1cruA 454 2.00e+00 1c9uA b.68.2.1 27617 1sw5A 275 2.47e+00 c.94.1.1 106069 1j08A 226 3.85e+00 c.47.1.2,c.47.1.2 83855,83856 1oiaA 95 4.05e+00 d.58.7.1 87051 1p35A 299 4.62e+00 1p35A b.28.1.1 23925 1p99A 295 4.64e+00 c.94.1.1 94384 1sw5B 275 4.91e+00 c.94.1.1 106070 1dpuA 99 6.11e+00 1dpuA a.4.5.16 16150 1db3A 372 6.20e+00 1db3A c.2.1.2 29813 2a6tA 271 6.75e+00 1o63A 219 6.89e+00 c.94.1.1 92540 1xrsA 516 7.12e+00 1a8l 226 7.12e+00 1a8l c.47.1.2,c.47.1.2 32777,32778 1x6vA 630 7.42e+00 1koe 172 7.60e+00 1koe d.169.1.5 42448 1z1dA 103 7.77e+00 2axcA 264 8.55e+00 1cot 129 8.63e+00 1ycc a.3.1.1 15899 1u6bA 98 9.31e+00 d.58.7.1 107703 1bx4A 345 9.91e+00 1bx4A c.72.1.1 34935 1a6f 119 1.01e+01 1a6f d.14.1.2 37564 1h3qA 140 1.02e+01 d.110.4.3 76652 1nu4A 97 1.03e+01 d.58.7.1 80731 1urnA 97 1.14e+01 1urnA d.58.7.1 39153 1t3qB 788 1.22e+01 d.41.1.1,d.133.1.1 106369,106370 1rm6A 769 1.28e+01 1r13A 148 1.38e+01 d.169.1.1,h.1.1.1 96782,96783 1l1dA 152 1.69e+01 b.88.1.3 73452 1c4kA 730 1.75e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1r61A 207 1.78e+01 c.8.8.1 97138 1j24A 143 1.93e+01 c.52.1.20 84008 1xe0A 114 1.94e+01 1i8lC 126 1.95e+01 1ah1 b.1.1.1 61974 1dg6A 191 1.96e+01 1d4vB b.22.1.1 23883 1yljA 263 1.96e+01 1ihgA 370 2.08e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1avaC 181 2.14e+01 1avaC b.42.4.1 25604 2brfA 110 2.18e+01 1l3iA 192 2.19e+01 c.66.1.22 77676 1th7A 81 2.20e+01 1xdyA 298 2.27e+01 1tz9A 367 2.36e+01 c.1.15.6 107466 2aqwA 332 2.37e+01 1pueE 89 2.39e+01 1awcA a.4.5.21 16165 2cc0A 195 2.53e+01 1qo0D 196 2.79e+01 1qo0D c.23.1.3 31125 1f3z 161 2.80e+01 1gpr b.84.3.1 28273 1y7rA 133 2.91e+01 1mq7A 154 3.00e+01 b.85.4.1 79404 1gbs 185 3.00e+01 153l d.2.1.5 36986 1lw6I 64 3.02e+01 d.40.1.1 74294 1f9aA 168 3.02e+01 1f9aA c.26.1.3 31602 1xsnA 335 3.03e+01 1xewY 172 3.07e+01 1pvmA 184 3.16e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1wvqA 167 3.18e+01 1xtmA 175 3.32e+01 2covD 104 3.45e+01 2c5qA 240 3.52e+01 1s4iA 175 3.62e+01 1eo6A 117 3.71e+01 1eo6A d.15.1.3 37609 2bcqA 335 3.81e+01 1rfmA 344 3.82e+01 c.122.1.1 97385 1rtu 114 3.89e+01 9rnt d.1.1.4 36139 1x1zA 252 3.97e+01 1inp 400 4.00e+01 1inp e.7.1.1 42972 1vpqA 273 4.07e+01 1ztxE 108 4.16e+01 1ql3A 99 4.20e+01 1ycc a.3.1.1 15822 1bo4A 168 4.21e+01 1bo4A d.108.1.1 40798 1xtlA 175 4.32e+01 2aa4A 289 4.38e+01 1yi9A 309 4.49e+01 1r0vA 305 4.69e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1npuA 117 4.70e+01 b.1.1.1 92038 1jjtA 228 4.88e+01 1a7tA d.157.1.1 63139 1se8A 301 4.89e+01 b.40.4.3 105448 1rztA 331 4.98e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1quqA 129 4.99e+01 1quqA b.40.4.3 25303 153l 185 5.11e+01 153l d.2.1.5 36984 1zpwX 90 5.18e+01 1wqsA 173 5.19e+01 1bza 262 5.21e+01 1btl e.3.1.1 42701 1iysA 262 5.23e+01 e.3.1.1 90723 1sixA 174 5.26e+01 b.85.4.1 98892 2affA 120 5.34e+01 1to2I 64 5.36e+01 2byjA 439 5.39e+01 1cei 94 5.51e+01 1cei a.28.2.1 16939 1v9dA 340 5.53e+01 a.207.1.1 100535 1kw4A 89 5.55e+01 a.60.1.2 73077 1kqqA 139 5.56e+01 a.4.3.1 72885 1rwzA 245 5.64e+01 d.131.1.2,d.131.1.2 98005,98006 1wywA 230 5.75e+01 1jj2L 194 5.76e+01 1ffkI d.12.1.2 63097 1r6xA 395 5.80e+01 b.122.1.3,c.26.1.5 97167,97168 1knb 196 5.83e+01 1qhvA b.21.1.1 23841 1np6A 174 5.84e+01 c.37.1.10 85954 1obfO 335 5.96e+01 c.2.1.3,d.81.1.1 86768,86769 2as0A 396 6.05e+01 1kdj 102 6.07e+01 1plc b.6.1.1 22864 1wr1B 58 6.16e+01 1cliA 345 6.23e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1unkA 87 6.28e+01 1cei a.28.2.1 16935 1rss 151 6.28e+01 1rss a.75.1.1 18392 1bw3 125 6.33e+01 1bw4 b.52.1.2 26899 1wxaA 116 6.33e+01 1bxeA 113 6.36e+01 1bxeA d.55.1.1 38898 1uw0A 117 6.36e+01 g.39.1.12 108063 1rxwA 336 6.49e+01 a.60.7.1,c.120.1.2 98059,98060 1rz2A 254 6.75e+01 b.100.1.1 105130 1viuA 203 6.82e+01 d.113.1.1 100771 2ghpA 292 6.86e+01 1irsA 112 6.91e+01 1qqgA b.55.1.2 26991 2an9A 207 6.93e+01 1reqB 637 6.97e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1s8nA 205 7.11e+01 c.23.1.1 105374 1j1vA 94 7.41e+01 a.4.12.2 83981 1y96A 86 7.41e+01 1s6cA 183 7.41e+01 a.39.1.5 98594 1zj6A 187 7.41e+01 2f9dA 125 7.42e+01 1bqhG 129 7.43e+01 1cd8 b.1.1.1 19715 1gky 187 7.47e+01 1gky c.37.1.1 31839 1j0fA 100 7.59e+01 c.47.1.14 90739 4hb1 108 7.73e+01 4hb1 k.8.1.1 46414 2bhoA 130 7.78e+01 1s96A 219 7.79e+01 c.37.1.1 98740 1dptA 117 7.96e+01 1dptA d.80.1.3 39862 2fhqA 141 8.01e+01 1rypL 212 8.03e+01 d.153.1.4 41880 1b43A 340 8.11e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1m4zA 238 8.16e+01 b.34.12.1 78630 2bshA 125 8.19e+01 1sdwA 314 8.27e+01 b.121.1.2,b.121.1.2 98810,98811 1rurH 218 8.27e+01 b.1.1.1,b.1.1.2 97879,97880 1ga6A 372 8.28e+01 1ga1A c.41.1.2 32556 1ko7A 314 8.36e+01 c.98.2.1,c.91.1.2 72797,72798 1ifyA 49 8.37e+01 a.5.2.1 71207 1ctqA 166 8.38e+01 1ctqA c.37.1.8 31965 1vj0A 380 8.47e+01 b.35.1.2,c.2.1.1 100786,100787 2bw3A 534 8.48e+01 1hzoA 271 8.50e+01 e.3.1.1 71092 2bylA 439 8.56e+01 1t9iA 163 8.61e+01 1hyxH 224 8.68e+01 1igtB b.1.1.1,b.1.1.2 20167,21191 1mlcB 218 8.69e+01 1igtB b.1.1.1,b.1.1.2 20053,21095 1pk1B 89 8.71e+01 1a79A 171 8.76e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 1ex7A 186 8.76e+01 1gky c.37.1.1 59537 2c2xA 281 8.77e+01 1nezG 128 8.77e+01 b.1.1.1 85592 1yrlA 491 8.96e+01 1xjvA 294 8.98e+01