# command:# Seed set to 1148122817 # command:# Prefix for input files set to # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 487909 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 8311 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:CPU_time= 21.8447 sec, elapsed time= 35.2461 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0287 numbered 1 through 199 Created new target T0287 from T0287.a2m # command:# command:# No conformations to remove in PopConform # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:# Prefix for input files set to # command:# reading script from file try7.costfcn # reading predictions from T0287.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0287.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # reading script from file T0287.449a_45.rr.constraints # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.694746 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.653715 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.652969 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.649162 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.648443 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.643246 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.642958 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I23.CB) [> -10 = 7 < 14] w=0.639112 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.633001 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.630877 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L22.CB) [> -10 = 7 < 14] w=0.629967 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.629085 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L22.CB) [> -10 = 7 < 14] w=0.627641 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.625495 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.624744 # Constraint # added constraint: constraint((T0287)L90.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.624324 # Constraint # added constraint: constraint((T0287)L90.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.619542 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.615865 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.615827 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.612559 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.610222 # Constraint # added constraint: constraint((T0287)L91.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.608697 # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.608294 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.607532 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.605849 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I23.CB) [> -10 = 7 < 14] w=0.605832 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.604035 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.603403 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.602896 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.602787 # Constraint # added constraint: constraint((T0287)I171.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.599122 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.598185 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.598147 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.598049 # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.59745 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.59715 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.59685 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.595527 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.594149 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.593974 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.593931 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.592215 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.591567 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.590979 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.590646 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.589328 # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)I142.CB) [> -10 = 7 < 14] w=0.588637 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.588097 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.587057 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.586322 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)L22.CB) [> -10 = 7 < 14] w=0.586169 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.583767 # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)I129.CB) [> -10 = 7 < 14] w=0.583206 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.582198 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.579655 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.579595 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.579584 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.57947 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.579464 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.578947 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.577776 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.577264 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.57655 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.576452 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.575978 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.575526 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.575183 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.575167 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.572628 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.571566 # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.570635 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.57039 # Constraint # added constraint: constraint((T0287)I171.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.56972 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.568707 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.568603 # Constraint # added constraint: constraint((T0287)L122.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.568309 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.567601 # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.56741 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.566691 # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.566446 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.56607 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.565923 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)M130.CB) [> -10 = 7 < 14] w=0.564921 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.564627 # Constraint # added constraint: constraint((T0287)L32.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.564409 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.563783 # Constraint # added constraint: constraint((T0287)L122.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.563603 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)A101.CB) [> -10 = 7 < 14] w=0.562824 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.560624 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.560215 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.55967 # Constraint # added constraint: constraint((T0287)L32.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.557699 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.557252 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.555596 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.555585 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.555226 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.554648 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.554376 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.553984 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.55351 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.552731 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.552709 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.552432 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.552286 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.552209 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.551453 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.550882 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.550814 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.549114 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.548465 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.548465 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.548247 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.547724 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.547376 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.547046 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.545942 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L26.CB) [> -10 = 7 < 14] w=0.545821 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.545729 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)H100.CB) [> -10 = 7 < 14] w=0.544538 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.543932 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.54384 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.542843 # Constraint # added constraint: constraint((T0287)L168.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.542625 # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.541898 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.541196 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.540842 # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.54075 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.540111 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.539317 # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.539113 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L26.CB) [> -10 = 7 < 14] w=0.539109 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.538847 # Constraint # added constraint: constraint((T0287)V178.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.538527 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.538126 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.538048 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.538019 # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.537443 # Constraint # added constraint: constraint((T0287)F164.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.536832 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.536721 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)M96.CB) [> -10 = 7 < 14] w=0.534726 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.534362 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.534333 # Constraint # added constraint: constraint((T0287)M54.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.533307 # Constraint # added constraint: constraint((T0287)L152.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.532382 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.532212 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.532019 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.531873 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.531558 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.531442 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.530953 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.530924 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)F110.CB) [> -10 = 7 < 14] w=0.529649 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.528681 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)I23.CB) [> -10 = 7 < 14] w=0.527691 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.527025 # Constraint # added constraint: constraint((T0287)L168.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.526876 # Constraint # added constraint: constraint((T0287)L109.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.526354 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.526106 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.526013 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.525232 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.524709 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.524588 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.524038 # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.523394 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.522673 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.522376 # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.521749 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.521006 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.520709 # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.520456 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.520308 # Constraint # added constraint: constraint((T0287)L152.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.520093 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.519246 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.519169 # Constraint # added constraint: constraint((T0287)L32.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.518745 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.518674 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.518525 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.517111 # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)H100.CB) [> -10 = 7 < 14] w=0.516979 # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.515802 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.515164 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.515054 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.514174 # Constraint # added constraint: constraint((T0287)L154.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.512991 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)F113.CB) [> -10 = 7 < 14] w=0.512936 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.512644 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.512606 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.512182 # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.5115 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.511165 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.511079 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.509479 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.509286 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.508308 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.507604 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)L26.CB) [> -10 = 7 < 14] w=0.507599 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)A101.CB) [> -10 = 7 < 14] w=0.506257 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.506221 # Constraint # added constraint: constraint((T0287)V162.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.50611 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.505492 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.50531 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.504778 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.504459 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.503309 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.500963 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.50031 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.500239 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.499626 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.499271 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.498978 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)F113.CB) [> -10 = 7 < 14] w=0.498968 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.498608 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.497499 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.497488 # Constraint # added constraint: bonus constraint((T0287)L168.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.496794 # Constraint # added constraint: bonus constraint((T0287)F164.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.496723 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.496703 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.496622 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.496475 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)L152.CB) [> -10 = 7 < 14] w=0.495276 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.495223 # Constraint # added constraint: bonus constraint((T0287)V162.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.494587 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.493615 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.493064 # Constraint # added constraint: bonus constraint((T0287)I117.CB, (T0287)I129.CB) [> -10 = 7 < 14] w=0.492446 # Constraint # added constraint: bonus constraint((T0287)V156.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.49217 # Constraint # added constraint: bonus constraint((T0287)I44.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.491175 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.48865 # Constraint # added constraint: bonus constraint((T0287)L61.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.487457 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.485526 # Constraint # added constraint: bonus constraint((T0287)F155.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.485262 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.483889 # Constraint # added constraint: bonus constraint((T0287)V75.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.483181 # Constraint # added constraint: bonus constraint((T0287)F84.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.483091 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.482635 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.481586 # Constraint # added constraint: bonus constraint((T0287)M11.CB, (T0287)I23.CB) [> -10 = 7 < 14] w=0.481466 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.481082 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.48044 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.480357 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.479529 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.47894 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)I79.CB) [> -10 = 7 < 14] w=0.478827 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.478642 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.478494 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.477777 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.477628 # Constraint # added constraint: bonus constraint((T0287)Y88.CB, (T0287)A101.CB) [> -10 = 7 < 14] w=0.477574 # Constraint # added constraint: bonus constraint((T0287)L61.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.477484 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.477024 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.476289 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.475689 # Constraint # added constraint: bonus constraint((T0287)M54.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.475288 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.475099 # Constraint # added constraint: bonus constraint((T0287)I171.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.474923 # Constraint # added constraint: bonus constraint((T0287)F164.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.473679 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.473138 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.472732 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.4727 # Constraint # added constraint: bonus constraint((T0287)V156.CB, (T0287)L168.CB) [> -10 = 7 < 14] w=0.472168 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.471267 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.470753 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.470653 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.470613 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.47032 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)M96.CB) [> -10 = 7 < 14] w=0.469355 # Constraint # added constraint: bonus constraint((T0287)I171.CB, (T0287)M191.CB) [> -10 = 7 < 14] w=0.469242 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.468132 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.468132 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.467839 # Constraint # added constraint: bonus constraint((T0287)I142.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.467825 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)I79.CB) [> -10 = 7 < 14] w=0.467822 # Constraint # added constraint: bonus constraint((T0287)F108.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.46769 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.467162 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.46703 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.466511 # Constraint # added constraint: bonus constraint((T0287)V162.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.466509 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.46638 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.466309 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.466274 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.466016 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)L109.CB) [> -10 = 7 < 14] w=0.465946 # Constraint # added constraint: bonus constraint((T0287)M47.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.465705 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.465245 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)F110.CB) [> -10 = 7 < 14] w=0.465166 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.464756 # Constraint # added constraint: bonus constraint((T0287)I102.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.464515 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.464415 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.464117 # Constraint # added constraint: bonus constraint((T0287)I102.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.464049 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)Y88.CB) [> -10 = 7 < 14] w=0.463721 # Constraint # added constraint: bonus constraint((T0287)L118.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.463058 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.462642 # Constraint # added constraint: bonus constraint((T0287)I44.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.462616 # Constraint # added constraint: bonus constraint((T0287)L90.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.462419 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.462293 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.462235 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)L152.CB) [> -10 = 7 < 14] w=0.462217 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)F164.CB) [> -10 = 7 < 14] w=0.462082 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)A74.CB) [> -10 = 7 < 14] w=0.462059 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.462012 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.461681 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.461522 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.46128 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.461128 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)L152.CB) [> -10 = 7 < 14] w=0.460666 # Constraint # added constraint: bonus constraint((T0287)I142.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.460438 # Constraint # added constraint: bonus constraint((T0287)L144.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.458474 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.458441 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.458333 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.458219 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.458002 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.457296 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.456775 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.456699 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.455126 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.454361 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)F113.CB) [> -10 = 7 < 14] w=0.454187 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.453677 # Constraint # added constraint: bonus constraint((T0287)I44.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.453357 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)L144.CB) [> -10 = 7 < 14] w=0.453221 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.453047 # Constraint # added constraint: bonus constraint((T0287)M54.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.452402 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)L109.CB) [> -10 = 7 < 14] w=0.452364 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.451995 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.45066 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.450627 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.450611 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)L31.CB) [> -10 = 7 < 14] w=0.449774 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)H100.CB) [> -10 = 7 < 14] w=0.448537 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.448358 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.448158 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.44741 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)I129.CB) [> -10 = 7 < 14] w=0.446954 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.44655 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.446363 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.445776 # Constraint # added constraint: bonus constraint((T0287)F110.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.445155 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.445002 # Constraint # added constraint: bonus constraint((T0287)L154.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.444441 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.444394 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)L144.CB) [> -10 = 7 < 14] w=0.444011 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.443246 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.443169 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)M47.CB) [> -10 = 7 < 14] w=0.442459 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.442013 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.441753 # Constraint # added constraint: bonus constraint((T0287)L144.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.441745 # Constraint # added constraint: bonus constraint((T0287)I135.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.441061 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.440902 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.440676 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.4406 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.439834 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.439772 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)M191.CB) [> -10 = 7 < 14] w=0.43894 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)Y72.CB) [> -10 = 7 < 14] w=0.437066 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)M47.CB) [> -10 = 7 < 14] w=0.436623 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.436472 # Constraint # added constraint: bonus constraint((T0287)I102.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.435724 # Constraint # added constraint: bonus constraint((T0287)F84.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.43568 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.43506 # Constraint # added constraint: bonus constraint((T0287)L152.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.433164 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.433112 # Constraint # added constraint: bonus constraint((T0287)M69.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.43263 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)M47.CB) [> -10 = 7 < 14] w=0.432196 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.432165 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.431424 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.431069 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.430539 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.430535 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)F131.CB) [> -10 = 7 < 14] w=0.430452 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.430346 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.429921 # Constraint # added constraint: bonus constraint((T0287)L90.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.429829 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.429536 # Constraint # added constraint: bonus constraint((T0287)F155.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.429338 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)F121.CB) [> -10 = 7 < 14] w=0.428637 # Constraint # added constraint: bonus constraint((T0287)L91.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.428541 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.428348 # Constraint # added constraint: bonus constraint((T0287)I79.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.427366 # Constraint # added constraint: bonus constraint((T0287)I44.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.427077 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.426279 # Constraint # added constraint: bonus constraint((T0287)L118.CB, (T0287)I129.CB) [> -10 = 7 < 14] w=0.425841 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.425401 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.425309 # Constraint # added constraint: bonus constraint((T0287)L168.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.424211 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.424142 # Constraint # added constraint: bonus constraint((T0287)L151.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.42339 # Constraint # added constraint: bonus constraint((T0287)I135.CB, (T0287)L144.CB) [> -10 = 7 < 14] w=0.422909 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.422767 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.422121 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.4219 # Constraint # added constraint: bonus constraint((T0287)F110.CB, (T0287)F121.CB) [> -10 = 7 < 14] w=0.421887 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)F124.CB) [> -10 = 7 < 14] w=0.420861 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)A103.CB) [> -10 = 7 < 14] w=0.420502 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.420228 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.420083 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.420001 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)F125.CB) [> -10 = 7 < 14] w=0.419861 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)A74.CB) [> -10 = 7 < 14] w=0.419752 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.419399 # Constraint # added constraint: bonus constraint((T0287)F108.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.419207 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.418595 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.417967 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.417917 # Constraint # added constraint: bonus constraint((T0287)F155.CB, (T0287)F164.CB) [> -10 = 7 < 14] w=0.417617 # Constraint # added constraint: bonus constraint((T0287)I102.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.416931 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.416465 # Constraint # added constraint: bonus constraint((T0287)M11.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.416319 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.415229 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.415216 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)F155.CB) [> -10 = 7 < 14] w=0.415066 # Constraint # added constraint: bonus constraint((T0287)F164.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.414821 # Constraint # added constraint: bonus constraint((T0287)I142.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.414808 # Constraint # added constraint: bonus constraint((T0287)V162.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.414796 # Constraint # added constraint: bonus constraint((T0287)M11.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.414708 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.413959 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.413277 # Constraint # added constraint: bonus constraint((T0287)L90.CB, (T0287)F110.CB) [> -10 = 7 < 14] w=0.410333 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.410116 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)E97.CB) [> -10 = 7 < 14] w=0.409851 # Constraint # added constraint: bonus constraint((T0287)V81.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.409808 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.409122 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.408749 # Constraint # added constraint: bonus constraint((T0287)L154.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.408489 # Constraint # added constraint: bonus constraint((T0287)L118.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.407602 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)Y72.CB) [> -10 = 7 < 14] w=0.407105 # Constraint # added constraint: bonus constraint((T0287)V75.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.406791 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.406332 # Constraint # added constraint: bonus constraint((T0287)M47.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.406181 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)F108.CB) [> -10 = 7 < 14] w=0.406164 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.405878 # Constraint # added constraint: bonus constraint((T0287)I117.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.405564 # Constraint # added constraint: bonus constraint((T0287)I135.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.40491 # Constraint # added constraint: bonus constraint((T0287)L90.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.404829 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.404284 # Constraint # added constraint: bonus constraint((T0287)L61.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.404076 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)D49.CB) [> -10 = 7 < 14] w=0.403171 # Constraint # added constraint: bonus constraint((T0287)L91.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.402998 # Constraint # added constraint: bonus constraint((T0287)M69.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.402643 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.401968 # Constraint # added constraint: bonus constraint((T0287)S78.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.401862 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)M130.CB) [> -10 = 7 < 14] w=0.401067 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.401001 # command:CPU_time= 30.8143 sec, elapsed time= 44.7124 sec) # command:# Making generic fragment library # fragment library contains # type length num_fragments num_indexes_used # n-terminus 1 1892 20 (100%) # n-terminus 2 1843 326 (81.5%) # middle 1 471021 20 (100%) # middle 2 460493 400 (100%) # middle 3 450512 7988 (99.85%) # middle 4 440909 118559 (74.0994%) # c-terminus 1 1858 20 (100%) # c-terminus 2 1813 367 (91.75%) # ss-bonds 1042 # command:CPU_time= 39.354 sec, elapsed time= 53.8762 sec) # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# reading Template.atoms # After reading Template.atoms have 560 chains in template library # command:# Prefix for input files set to 1a8y/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-fssp-global-adpstyle5.a2m # 1a8y read from 1a8y-T0287-fssp-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 T0287 5 :MRKL 1a8y 26 :VFKK # choosing archetypes in rotamer library T0287 11 :MIA 1a8y 32 :VLA T0287 14 :DSKD 1a8y 48 :QRQF T0287 20 :E 1a8y 54 :E T0287 21 :KLIESLQEN 1a8y 93 :DSIYVFKED T0287 32 :LNTD 1a8y 104 :IEYD T0287 38 :KKII 1a8y 110 :FSAD T0287 42 :DQIKTMH 1a8y 125 :DPVELIE T0287 51 :F 1a8y 136 :L T0287 54 :MHT 1a8y 139 :FEN T0287 58 :KGA 1a8y 142 :IED T0287 64 :VLRNYMKD 1a8y 147 :KLIGYFKN T0287 94 :ETMELLHAIAENP 1a8y 158 :EHYKAFKEAAEEF T0287 107 :N 1a8y 173 :Y T0287 110 :FSKFDRSILG 1a8y 176 :FFATFDSKVA T0287 148 :N 1a8y 191 :K T0287 151 :LLKLFVMTD 1a8y 194 :EIDFYEAFM T0287 162 :VNFY 1a8y 205 :PVTI T0287 168 :L 1a8y 212 :P T0287 182 :LMKFDLEKYMKEKG 1a8y 213 :NSEEEIVNFVEEHR Number of specific fragments extracted= 20 number of extra gaps= 11 total=20 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_326148031.pdb -s /var/tmp/to_scwrl_326148031.seq -o /var/tmp/from_scwrl_326148031.pdb > /var/tmp/scwrl_326148031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326148031.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-fssp-local-adpstyle5.a2m # 1a8y read from 1a8y-T0287-fssp-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)L65 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)R66 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 T0287 55 :HTNKGALDKV 1a8y 42 :EDDKASQRQF T0287 67 :NYMKDYR 1a8y 54 :EELILEL T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :M 1a8y 104 :I T0287 97 :ELLHAIAENP 1a8y 161 :KAFKEAAEEF T0287 107 :N 1a8y 173 :Y T0287 110 :FSKFD 1a8y 176 :FFATF Number of specific fragments extracted= 8 number of extra gaps= 4 total=28 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1408696158.pdb -s /var/tmp/to_scwrl_1408696158.seq -o /var/tmp/from_scwrl_1408696158.pdb > /var/tmp/scwrl_1408696158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408696158.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t04-global-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t04-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)L187 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K194 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 T0287 8 :LFSMIADSKD 1a8y 4 :LDFPEYDGVD T0287 20 :EKLIESLQENELLNTD 1a8y 54 :EELILELAAQVLEDKG T0287 36 :EKKKIIDQIKTMHDFFKQMHT 1a8y 111 :SADTLVEFLLDVLEDPVELIE T0287 59 :GAL 1a8y 134 :REL T0287 64 :VLR 1a8y 139 :FEN T0287 67 :NYMKDY 1a8y 168 :EEFHPY T0287 75 :VIKSIG 1a8y 176 :FFATFD T0287 82 :DKFKKV 1a8y 182 :SKVAKK T0287 91 :L 1a8y 191 :K T0287 94 :ETMELLHAI 1a8y 194 :EIDFYEAFM T0287 105 :NPNF 1a8y 205 :PVTI T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 138 :M 1a8y 235 :P T0287 142 :IELYGTNLPLLKLFVM 1a8y 239 :YETWEDDMDGIHIVAF T0287 160 :EE 1a8y 257 :EA T0287 168 :LKTIEQYNDYVRDLLMKF 1a8y 259 :DPDGYEFLEILKSVAQDN T0287 188 :EKYMK 1a8y 321 :DSVWM T0287 195 :GVQNA 1a8y 335 :SAEEL Number of specific fragments extracted= 18 number of extra gaps= 9 total=46 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1892774002.pdb -s /var/tmp/to_scwrl_1892774002.seq -o /var/tmp/from_scwrl_1892774002.pdb > /var/tmp/scwrl_1892774002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1892774002.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t04-global-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t04-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)M54 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)E97 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)A166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 8 :LFSMIADSKDKK 1a8y 4 :LDFPEYDGVDRV T0287 20 :EKLIESLQENE 1a8y 54 :EELILELAAQV T0287 31 :LLNTDEKKKII 1a8y 74 :LVDSEKDAAVA T0287 44 :IK 1a8y 87 :LG T0287 46 :T 1a8y 94 :S T0287 48 :HD 1a8y 104 :IE T0287 51 :FK 1a8y 106 :YD T0287 55 :H 1a8y 110 :F T0287 57 :NKGALDKVLRNYMK 1a8y 111 :SADTLVEFLLDVLE T0287 85 :KKVYRLL 1a8y 125 :DPVELIE T0287 94 :ETM 1a8y 134 :REL T0287 99 :LHAIAE 1a8y 139 :FENIED T0287 107 :N 1a8y 147 :K T0287 108 :F 1a8y 208 :I T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 138 :M 1a8y 235 :P T0287 142 :IELYGTNLP 1a8y 239 :YETWEDDMD T0287 151 :LLKLF 1a8y 250 :HIVAF T0287 158 :TD 1a8y 257 :EA T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 21 number of extra gaps= 8 total=67 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1093625179.pdb -s /var/tmp/to_scwrl_1093625179.seq -o /var/tmp/from_scwrl_1093625179.pdb > /var/tmp/scwrl_1093625179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093625179.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t04-local-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t04-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 T0287 147 :TNLPLLKLF 1a8y 90 :TEEDSIYVF T0287 157 :MTD 1a8y 99 :KED T0287 162 :VN 1a8y 104 :IE T0287 165 :YA 1a8y 106 :YD T0287 169 :KTIEQYNDYVRDLL 1a8y 110 :FSADTLVEFLLDVL Number of specific fragments extracted= 5 number of extra gaps= 2 total=72 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1541836948.pdb -s /var/tmp/to_scwrl_1541836948.seq -o /var/tmp/from_scwrl_1541836948.pdb > /var/tmp/scwrl_1541836948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541836948.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t04-local-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t04-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 T0287 49 :DFFKQMHT 1a8y 124 :EDPVELIE T0287 59 :GAL 1a8y 134 :REL T0287 64 :VL 1a8y 139 :FE T0287 66 :RNYMKD 1a8y 168 :EEFHPY T0287 74 :AVIKSI 1a8y 176 :FFATFD T0287 82 :DKFKKV 1a8y 182 :SKVAKK T0287 91 :L 1a8y 191 :K T0287 94 :ETMELLHAI 1a8y 194 :EIDFYEAFM T0287 105 :NPNF 1a8y 205 :PVTI T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 138 :M 1a8y 235 :P T0287 142 :IELY 1a8y 239 :YETW T0287 146 :GTNLPLLKLF 1a8y 245 :DMDGIHIVAF T0287 158 :TD 1a8y 257 :EA Number of specific fragments extracted= 14 number of extra gaps= 9 total=86 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_854259211.pdb -s /var/tmp/to_scwrl_854259211.seq -o /var/tmp/from_scwrl_854259211.pdb > /var/tmp/scwrl_854259211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_854259211.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t06-global-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t06-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)M54 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)F84 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 T0287 2 :SNNMRKL 1a8y 12 :VDRVINV T0287 9 :FSMIADS 1a8y 43 :DDKASQR T0287 17 :D 1a8y 50 :Q T0287 20 :EKLIESLQEN 1a8y 54 :EELILELAAQ T0287 30 :ELLNTDEKKKII 1a8y 73 :GLVDSEKDAAVA T0287 44 :IK 1a8y 87 :LG T0287 48 :HD 1a8y 104 :IE T0287 51 :FK 1a8y 106 :YD T0287 55 :H 1a8y 110 :F T0287 57 :NKGALDKVLRNYMKDYRAVIK 1a8y 111 :SADTLVEFLLDVLEDPVELIE T0287 79 :IGVDK 1a8y 140 :ENIED T0287 86 :KVYRLLESE 1a8y 147 :KLIGYFKNK T0287 97 :ELLHAIAENPNFL 1a8y 158 :EHYKAFKEAAEEF T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 136 :R 1a8y 235 :P T0287 140 :SQIELYGTNLPLLKLF 1a8y 239 :YETWEDDMDGIHIVAF T0287 158 :TDEE 1a8y 257 :EADP T0287 163 :NFYANLKTIEQY 1a8y 261 :DGYEFLEILKSV T0287 187 :LEKY 1a8y 273 :AQDN T0287 193 :EKG 1a8y 279 :NPD T0287 198 :NA 1a8y 284 :II Number of specific fragments extracted= 21 number of extra gaps= 9 total=107 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1625768679.pdb -s /var/tmp/to_scwrl_1625768679.seq -o /var/tmp/from_scwrl_1625768679.pdb > /var/tmp/scwrl_1625768679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1625768679.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t06-global-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t06-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)M54 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)F84 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)E97 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 3 :NNMRKL 1a8y 13 :DRVINV T0287 9 :FSMIADS 1a8y 43 :DDKASQR T0287 17 :D 1a8y 50 :Q T0287 20 :EKLIESLQENEL 1a8y 54 :EELILELAAQVL T0287 32 :LNTDEKKKII 1a8y 75 :VDSEKDAAVA T0287 44 :IK 1a8y 87 :LG T0287 48 :HD 1a8y 104 :IE T0287 51 :FK 1a8y 106 :YD T0287 55 :H 1a8y 110 :F T0287 57 :NKGALDKVLRNYMKDYR 1a8y 111 :SADTLVEFLLDVLEDPV T0287 74 :AVIKS 1a8y 183 :KVAKK T0287 83 :K 1a8y 191 :K T0287 86 :KVYRLLES 1a8y 194 :EIDFYEAF T0287 96 :M 1a8y 202 :M T0287 99 :LHAI 1a8y 205 :PVTI T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 136 :R 1a8y 235 :P T0287 140 :SQIELYGTNLPLLKLF 1a8y 239 :YETWEDDMDGIHIVAF T0287 158 :TDEE 1a8y 257 :EADP T0287 163 :NFYANLKTIEQYN 1a8y 261 :DGYEFLEILKSVA T0287 176 :DYVRDL 1a8y 341 :DWLEDV Number of specific fragments extracted= 21 number of extra gaps= 8 total=128 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1199411368.pdb -s /var/tmp/to_scwrl_1199411368.seq -o /var/tmp/from_scwrl_1199411368.pdb > /var/tmp/scwrl_1199411368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199411368.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t06-local-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t06-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 136 :R 1a8y 235 :P T0287 140 :SQIELYGTNLPLLKLF 1a8y 239 :YETWEDDMDGIHIVAF T0287 158 :TDEE 1a8y 257 :EADP T0287 163 :NFYANLKTIEQY 1a8y 261 :DGYEFLEILKSV Number of specific fragments extracted= 5 number of extra gaps= 2 total=133 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1149899783.pdb -s /var/tmp/to_scwrl_1149899783.seq -o /var/tmp/from_scwrl_1149899783.pdb > /var/tmp/scwrl_1149899783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1149899783.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t06-local-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t06-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)V64 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)L65 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)F84 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)E97 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 T0287 32 :LNTDE 1a8y 140 :ENIED T0287 39 :KIIDQIK 1a8y 147 :KLIGYFK T0287 46 :TMHDFFKQMH 1a8y 162 :AFKEAAEEFH T0287 62 :DK 1a8y 172 :PY T0287 66 :RNYMKDY 1a8y 176 :FFATFDS T0287 74 :AVIKS 1a8y 183 :KVAKK T0287 83 :K 1a8y 191 :K T0287 86 :KVYRLLES 1a8y 194 :EIDFYEAF T0287 96 :M 1a8y 202 :M T0287 99 :LHAI 1a8y 205 :PVTI T0287 106 :PN 1a8y 212 :PN T0287 114 :DRSILGIFLPFFSKPIMFKMS 1a8y 214 :SEEEIVNFVEEHRRSTLRKLK T0287 136 :R 1a8y 235 :P T0287 140 :SQIELYGTNLPLLKLF 1a8y 239 :YETWEDDMDGIHIVAF T0287 158 :TDEE 1a8y 257 :EADP T0287 163 :NFYANLKTIEQY 1a8y 261 :DGYEFLEILKSV Number of specific fragments extracted= 16 number of extra gaps= 8 total=149 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_507055252.pdb -s /var/tmp/to_scwrl_507055252.seq -o /var/tmp/from_scwrl_507055252.pdb > /var/tmp/scwrl_507055252.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_507055252.pdb Number of alignments=10 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t2k-global-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t2k-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 T0287 1 :MSNNMRKL 1a8y 44 :DKASQRQF T0287 9 :FSMIADSKDKKEKLIESL 1a8y 58 :LELAAQVLEDKGVGFGLV T0287 27 :QENELLN 1a8y 78 :EKDAAVA T0287 36 :EKKKIIDQIKTMHDF 1a8y 87 :LGLTEEDSIYVFKED T0287 53 :QMHT 1a8y 104 :IEYD T0287 59 :GALDKVLRNYMKDYRAVIKSIG 1a8y 110 :FSADTLVEFLLDVLEDPVELIE T0287 82 :DKF 1a8y 134 :REL T0287 87 :VYR 1a8y 139 :FEN T0287 90 :LLESE 1a8y 151 :YFKNK T0287 97 :ELLHAIAENPNFL 1a8y 158 :EHYKAFKEAAEEF T0287 110 :F 1a8y 187 :K T0287 114 :D 1a8y 191 :K T0287 117 :ILGIFLPFF 1a8y 194 :EIDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 135 :IREM 1a8y 232 :KLKP T0287 142 :IELYGTNLP 1a8y 239 :YETWEDDMD T0287 151 :LLKLFV 1a8y 249 :IHIVAF T0287 159 :DEEVNFYANLKTIEQYNDYV 1a8y 257 :EADPDGYEFLEILKSVAQDN T0287 181 :L 1a8y 279 :N T0287 182 :LMKFDLEKYMKE 1a8y 284 :IIWIDPDDFPLL T0287 196 :VQNA 1a8y 298 :YWEK Number of specific fragments extracted= 21 number of extra gaps= 13 total=170 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_670177882.pdb -s /var/tmp/to_scwrl_670177882.seq -o /var/tmp/from_scwrl_670177882.pdb > /var/tmp/scwrl_670177882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_670177882.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t2k-global-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t2k-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)M54 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 T0287 1 :MSNNMRKLFS 1a8y 11 :GVDRVINVNA T0287 11 :MI 1a8y 26 :VF T0287 14 :DSKDKKEKLIES 1a8y 40 :PPEDDKASQRQF T0287 26 :LQE 1a8y 65 :LED T0287 32 :LNTDEKKKII 1a8y 75 :VDSEKDAAVA T0287 44 :I 1a8y 87 :L T0287 45 :KTMHDFFKQ 1a8y 93 :DSIYVFKED T0287 56 :TN 1a8y 104 :IE T0287 58 :K 1a8y 107 :D T0287 61 :LD 1a8y 110 :FS T0287 63 :KVLRNYMKDY 1a8y 113 :DTLVEFLLDV T0287 73 :RAVIK 1a8y 127 :VELIE T0287 82 :DKF 1a8y 134 :REL T0287 87 :VYR 1a8y 139 :FEN T0287 90 :LLESE 1a8y 151 :YFKNK T0287 97 :ELLHAIAENPNFL 1a8y 158 :EHYKAFKEAAEEF T0287 110 :F 1a8y 187 :K T0287 114 :D 1a8y 191 :K T0287 117 :ILGIFLPFF 1a8y 194 :EIDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 135 :IREM 1a8y 212 :PNSE T0287 142 :IELYGTNLP 1a8y 239 :YETWEDDMD T0287 151 :LLKLFV 1a8y 249 :IHIVAF T0287 159 :DEEVNFYANLKTIEQYNDYV 1a8y 257 :EADPDGYEFLEILKSVAQDN T0287 181 :L 1a8y 279 :N T0287 182 :LMKFDLEKYMKE 1a8y 284 :IIWIDPDDFPLL T0287 196 :VQNA 1a8y 298 :YWEK Number of specific fragments extracted= 27 number of extra gaps= 13 total=197 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1986806094.pdb -s /var/tmp/to_scwrl_1986806094.seq -o /var/tmp/from_scwrl_1986806094.pdb > /var/tmp/scwrl_1986806094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1986806094.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t2k-local-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t2k-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)A166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 105 :NP 1a8y 234 :KP T0287 110 :FSKFDRSILGIFLPFF 1a8y 239 :YETWEDDMDGIHIVAF T0287 130 :MFKMSIREMDSQ 1a8y 284 :IIWIDPDDFPLL T0287 144 :LYGT 1a8y 298 :YWEK T0287 148 :N 1a8y 308 :S T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=205 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_25309941.pdb -s /var/tmp/to_scwrl_25309941.seq -o /var/tmp/from_scwrl_25309941.pdb > /var/tmp/scwrl_25309941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25309941.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t2k-local-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t2k-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)A166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 T0287 100 :HAIAENPNFL 1a8y 161 :KAFKEAAEEF T0287 110 :F 1a8y 187 :K T0287 114 :D 1a8y 191 :K T0287 117 :ILGIFLPFF 1a8y 194 :EIDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 135 :IREM 1a8y 212 :PNSE T0287 142 :IELYGTN 1a8y 239 :YETWEDD T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 10 number of extra gaps= 5 total=215 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1445151594.pdb -s /var/tmp/to_scwrl_1445151594.seq -o /var/tmp/from_scwrl_1445151594.pdb > /var/tmp/scwrl_1445151594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1445151594.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-simplesw-adpstyle1.a2m # 1a8y read from T0287-1a8y-simplesw-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=218 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-simplesw-adpstyle5.a2m # 1a8y read from T0287-1a8y-simplesw-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)V156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 94 :ETMELLHAIA 1a8y 264 :EFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :FFSKPIMFKMS 1a8y 298 :YWEKTFDIDLS T0287 137 :E 1a8y 311 :Q T0287 142 :IELYGTN 1a8y 312 :IGVVNVT T0287 151 :LLKLF 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=226 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_900249122.pdb -s /var/tmp/to_scwrl_900249122.seq -o /var/tmp/from_scwrl_900249122.pdb > /var/tmp/scwrl_900249122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_900249122.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-global-adpstyle1.a2m # 1a8y read from T0287-1a8y-t04-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 T0287 4 :NMRKLFSMIADSKD 1a8y 4 :LDFPEYDGVDRVIN T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAEN 1a8y 110 :FSAD T0287 116 :SILGIFLPFFSKPIMFKM 1a8y 114 :TLVEFLLDVLEDPVELIE T0287 136 :REM 1a8y 134 :REL T0287 142 :IELYGT 1a8y 139 :FENIED T0287 150 :PLLKLFVMT 1a8y 147 :KLIGYFKNK T0287 161 :E 1a8y 158 :E T0287 163 :NFYANLKTIEQYNDY 1a8y 159 :HYKAFKEAAEEFHPY T0287 181 :LLMKFDLEKYMK 1a8y 176 :FFATFDSKVAKK T0287 196 :V 1a8y 191 :K T0287 199 :A 1a8y 194 :E Number of specific fragments extracted= 18 number of extra gaps= 13 total=244 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_554004657.pdb -s /var/tmp/to_scwrl_554004657.seq -o /var/tmp/from_scwrl_554004657.pdb > /var/tmp/scwrl_554004657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554004657.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-global-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 T0287 4 :NMRKLFSMIA 1a8y 11 :GVDRVINVNA T0287 17 :D 1a8y 24 :K T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE T0287 98 :LLHAIAENPNFLFS 1a8y 118 :FLLDVLEDPVELIE T0287 112 :KF 1a8y 141 :NI T0287 116 :SILGIFLPF 1a8y 147 :KLIGYFKNK T0287 127 :KP 1a8y 158 :EH T0287 129 :IMFKMSIREMDSQ 1a8y 161 :KAFKEAAEEFHPY T0287 144 :LYGT 1a8y 176 :FFAT T0287 148 :NLPLLKL 1a8y 181 :DSKVAKK T0287 158 :T 1a8y 191 :K T0287 161 :EVNFYANLK 1a8y 194 :EIDFYEAFM T0287 181 :LLM 1a8y 205 :PVT Number of specific fragments extracted= 19 number of extra gaps= 12 total=263 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1806706146.pdb -s /var/tmp/to_scwrl_1806706146.seq -o /var/tmp/from_scwrl_1806706146.pdb > /var/tmp/scwrl_1806706146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1806706146.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 11 :MIADSK 1a8y 15 :VINVNA T0287 20 :EKLIES 1a8y 24 :KNVFKK T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKG 1a8y 54 :EELILELAAQVLEDKG T0287 69 :MKDYRAVI 1a8y 77 :SEKDAAVA T0287 79 :IGVDK 1a8y 87 :LGLTE T0287 85 :KKVYRLL 1a8y 113 :DTLVEFL T0287 94 :ETMELLHAIAEN 1a8y 158 :EHYKAFKEAAEE T0287 106 :PN 1a8y 172 :PY T0287 109 :LFSKFDRSI 1a8y 176 :FFATFDSKV T0287 118 :LGIFLPFF 1a8y 195 :IDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 137 :EMDSQI 1a8y 245 :DMDGIH T0287 145 :Y 1a8y 303 :F T0287 146 :GTN 1a8y 306 :DLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 17 number of extra gaps= 11 total=280 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_724607684.pdb -s /var/tmp/to_scwrl_724607684.seq -o /var/tmp/from_scwrl_724607684.pdb > /var/tmp/scwrl_724607684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724607684.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)M5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 2 :S 1a8y 20 :A T0287 6 :RKLFSM 1a8y 24 :KNVFKK T0287 13 :ADSKDKKEKL 1a8y 42 :EDDKASQRQF T0287 25 :SLQENEL 1a8y 54 :EELILEL T0287 33 :NTDEKKKII 1a8y 76 :DSEKDAAVA T0287 44 :IKTMHDFFKQMHT 1a8y 112 :ADTLVEFLLDVLE T0287 59 :GAL 1a8y 134 :REL T0287 64 :V 1a8y 139 :F T0287 65 :LRNYMKDY 1a8y 163 :FKEAAEEF T0287 73 :RAVIKS 1a8y 182 :SKVAKK T0287 82 :D 1a8y 191 :K T0287 85 :KKVYRLLES 1a8y 216 :EEIVNFVEE T0287 94 :ETMELLHAIAE 1a8y 264 :EFLEILKSVAQ T0287 105 :N 1a8y 276 :N T0287 125 :FSK 1a8y 279 :NPD T0287 130 :MFKMSIREMDSQ 1a8y 284 :IIWIDPDDFPLL T0287 144 :L 1a8y 298 :Y T0287 145 :YGTN 1a8y 305 :IDLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 21 number of extra gaps= 13 total=301 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1531540651.pdb -s /var/tmp/to_scwrl_1531540651.seq -o /var/tmp/from_scwrl_1531540651.pdb > /var/tmp/scwrl_1531540651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1531540651.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-local-adpstyle1.a2m # 1a8y read from T0287-1a8y-t04-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=304 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-local-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)V156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :FFSKPIMFKMS 1a8y 298 :YWEKTFDIDLS T0287 137 :E 1a8y 311 :Q T0287 142 :IELYGTN 1a8y 312 :IGVVNVT T0287 151 :LLKLF 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=312 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2146113621.pdb -s /var/tmp/to_scwrl_2146113621.seq -o /var/tmp/from_scwrl_2146113621.pdb > /var/tmp/scwrl_2146113621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2146113621.pdb Number of alignments=20 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :F 1a8y 298 :Y T0287 125 :FS 1a8y 307 :LS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :DSQIE 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=320 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1743905982.pdb -s /var/tmp/to_scwrl_1743905982.seq -o /var/tmp/from_scwrl_1743905982.pdb > /var/tmp/scwrl_1743905982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1743905982.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 79 :IGVDKFKKVYRLLES 1a8y 257 :EADPDGYEFLEILKS T0287 98 :LLHAI 1a8y 272 :VAQDN T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRS 1a8y 289 :PDDFPLL T0287 121 :FLPFFS 1a8y 303 :FDIDLS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :D 1a8y 321 :D T0287 142 :IELY 1a8y 322 :SVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 9 number of extra gaps= 5 total=329 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_605330465.pdb -s /var/tmp/to_scwrl_605330465.seq -o /var/tmp/from_scwrl_605330465.pdb > /var/tmp/scwrl_605330465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_605330465.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-global-adpstyle1.a2m # 1a8y read from T0287-1a8y-t06-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 T0287 4 :NMRKLFSMIADSKD 1a8y 4 :LDFPEYDGVDRVIN T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAEN 1a8y 110 :FSAD T0287 116 :SILGIFLPFFSKPIMFKM 1a8y 114 :TLVEFLLDVLEDPVELIE T0287 136 :REM 1a8y 134 :REL T0287 142 :IELYGT 1a8y 139 :FENIED T0287 150 :PLLKLFVMT 1a8y 147 :KLIGYFKNK T0287 161 :E 1a8y 158 :E T0287 163 :NFYANLKTIEQYNDY 1a8y 159 :HYKAFKEAAEEFHPY T0287 181 :LLMKFDLEKYMK 1a8y 176 :FFATFDSKVAKK T0287 196 :V 1a8y 191 :K T0287 199 :A 1a8y 194 :E Number of specific fragments extracted= 18 number of extra gaps= 13 total=347 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1064164627.pdb -s /var/tmp/to_scwrl_1064164627.seq -o /var/tmp/from_scwrl_1064164627.pdb > /var/tmp/scwrl_1064164627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064164627.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-global-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 T0287 4 :NMRKLFSMIA 1a8y 11 :GVDRVINVNA T0287 17 :D 1a8y 24 :K T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE T0287 98 :LLHAIAENPNFLFS 1a8y 118 :FLLDVLEDPVELIE T0287 112 :KF 1a8y 141 :NI T0287 116 :SILGIFLPF 1a8y 147 :KLIGYFKNK T0287 127 :KP 1a8y 158 :EH T0287 129 :IMFKMSIREMDSQ 1a8y 161 :KAFKEAAEEFHPY T0287 144 :LYGT 1a8y 176 :FFAT T0287 148 :NLPLLKL 1a8y 181 :DSKVAKK T0287 158 :T 1a8y 191 :K T0287 161 :EVNFYANLK 1a8y 194 :EIDFYEAFM T0287 181 :LLM 1a8y 205 :PVT Number of specific fragments extracted= 19 number of extra gaps= 12 total=366 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_468568245.pdb -s /var/tmp/to_scwrl_468568245.seq -o /var/tmp/from_scwrl_468568245.pdb > /var/tmp/scwrl_468568245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_468568245.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 11 :MIADSK 1a8y 15 :VINVNA T0287 20 :EKLIES 1a8y 24 :KNVFKK T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKG 1a8y 54 :EELILELAAQVLEDKG T0287 69 :MKDYRAVI 1a8y 77 :SEKDAAVA T0287 79 :IGVDK 1a8y 87 :LGLTE T0287 85 :KKVYRLL 1a8y 113 :DTLVEFL T0287 94 :ETMELLHAIAEN 1a8y 158 :EHYKAFKEAAEE T0287 106 :PN 1a8y 172 :PY T0287 109 :LFSKFDRSI 1a8y 176 :FFATFDSKV T0287 118 :LGIFLPFF 1a8y 195 :IDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 137 :EMDSQI 1a8y 245 :DMDGIH T0287 145 :Y 1a8y 303 :F T0287 146 :GTN 1a8y 306 :DLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 17 number of extra gaps= 11 total=383 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1572254972.pdb -s /var/tmp/to_scwrl_1572254972.seq -o /var/tmp/from_scwrl_1572254972.pdb > /var/tmp/scwrl_1572254972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1572254972.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)M5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 2 :S 1a8y 20 :A T0287 6 :RKLFSM 1a8y 24 :KNVFKK T0287 13 :ADSKDKKEKL 1a8y 42 :EDDKASQRQF T0287 25 :SLQENEL 1a8y 54 :EELILEL T0287 33 :NTDEKKKII 1a8y 76 :DSEKDAAVA T0287 44 :IKTMHDFFKQMHT 1a8y 112 :ADTLVEFLLDVLE T0287 59 :GAL 1a8y 134 :REL T0287 64 :V 1a8y 139 :F T0287 65 :LRNYMKDY 1a8y 163 :FKEAAEEF T0287 73 :RAVIKS 1a8y 182 :SKVAKK T0287 82 :D 1a8y 191 :K T0287 85 :KKVYRLLES 1a8y 216 :EEIVNFVEE T0287 94 :ETMELLHAIAE 1a8y 264 :EFLEILKSVAQ T0287 105 :N 1a8y 276 :N T0287 125 :FSK 1a8y 279 :NPD T0287 130 :MFKMSIREMDSQ 1a8y 284 :IIWIDPDDFPLL T0287 144 :L 1a8y 298 :Y T0287 145 :YGTN 1a8y 305 :IDLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 21 number of extra gaps= 13 total=404 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_487564379.pdb -s /var/tmp/to_scwrl_487564379.seq -o /var/tmp/from_scwrl_487564379.pdb > /var/tmp/scwrl_487564379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487564379.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-local-adpstyle1.a2m # 1a8y read from T0287-1a8y-t06-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=407 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-local-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)V156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :FFSKPIMFKMS 1a8y 298 :YWEKTFDIDLS T0287 137 :E 1a8y 311 :Q T0287 142 :IELYGTN 1a8y 312 :IGVVNVT T0287 151 :LLKLF 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=415 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_363782690.pdb -s /var/tmp/to_scwrl_363782690.seq -o /var/tmp/from_scwrl_363782690.pdb > /var/tmp/scwrl_363782690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_363782690.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :F 1a8y 298 :Y T0287 125 :FS 1a8y 307 :LS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :DSQIE 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=423 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1219525623.pdb -s /var/tmp/to_scwrl_1219525623.seq -o /var/tmp/from_scwrl_1219525623.pdb > /var/tmp/scwrl_1219525623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1219525623.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 79 :IGVDKFKKVYRLLES 1a8y 257 :EADPDGYEFLEILKS T0287 98 :LLHAI 1a8y 272 :VAQDN T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRS 1a8y 289 :PDDFPLL T0287 121 :FLPFFS 1a8y 303 :FDIDLS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :D 1a8y 321 :D T0287 142 :IELY 1a8y 322 :SVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 9 number of extra gaps= 5 total=432 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1780769631.pdb -s /var/tmp/to_scwrl_1780769631.seq -o /var/tmp/from_scwrl_1780769631.pdb > /var/tmp/scwrl_1780769631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1780769631.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-global-adpstyle1.a2m # 1a8y read from T0287-1a8y-t2k-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 T0287 4 :NMRKLFSMIADSKD 1a8y 4 :LDFPEYDGVDRVIN T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAEN 1a8y 110 :FSAD T0287 116 :SILGIFLPFFSKPIMFKM 1a8y 114 :TLVEFLLDVLEDPVELIE T0287 136 :REM 1a8y 134 :REL T0287 142 :IELYGT 1a8y 139 :FENIED T0287 150 :PLLKLFVMT 1a8y 147 :KLIGYFKNK T0287 161 :E 1a8y 158 :E T0287 163 :NFYANLKTIEQYNDY 1a8y 159 :HYKAFKEAAEEFHPY T0287 181 :LLMKFDLEKYMK 1a8y 176 :FFATFDSKVAKK T0287 196 :V 1a8y 191 :K T0287 199 :A 1a8y 194 :E Number of specific fragments extracted= 18 number of extra gaps= 13 total=450 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1475384939.pdb -s /var/tmp/to_scwrl_1475384939.seq -o /var/tmp/from_scwrl_1475384939.pdb > /var/tmp/scwrl_1475384939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475384939.pdb Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-global-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 T0287 4 :NMRKLFSMIA 1a8y 11 :GVDRVINVNA T0287 17 :D 1a8y 24 :K T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE T0287 98 :LLHAIAENPNFLFS 1a8y 118 :FLLDVLEDPVELIE T0287 112 :KF 1a8y 141 :NI T0287 116 :SILGIFLPF 1a8y 147 :KLIGYFKNK T0287 127 :KP 1a8y 158 :EH T0287 129 :IMFKMSIREMDSQ 1a8y 161 :KAFKEAAEEFHPY T0287 144 :LYGT 1a8y 176 :FFAT T0287 148 :NLPLLKL 1a8y 181 :DSKVAKK T0287 158 :T 1a8y 191 :K T0287 161 :EVNFYANLK 1a8y 194 :EIDFYEAFM T0287 181 :LLM 1a8y 205 :PVT Number of specific fragments extracted= 19 number of extra gaps= 12 total=469 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1202684520.pdb -s /var/tmp/to_scwrl_1202684520.seq -o /var/tmp/from_scwrl_1202684520.pdb > /var/tmp/scwrl_1202684520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1202684520.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)M5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 T0287 2 :S 1a8y 20 :A T0287 6 :RKLFSM 1a8y 24 :KNVFKK T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKG 1a8y 54 :EELILELAAQVLEDKG T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDK 1a8y 87 :LGLTE T0287 85 :KKVYRLL 1a8y 113 :DTLVEFL T0287 94 :ETMELLHAIAEN 1a8y 158 :EHYKAFKEAAEE T0287 106 :PN 1a8y 172 :PY T0287 109 :LFSKFDRSI 1a8y 176 :FFATFDSKV T0287 118 :LGIFLPFF 1a8y 195 :IDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 137 :EM 1a8y 234 :KP T0287 142 :IELYGTNLPLLKLFVM 1a8y 239 :YETWEDDMDGIHIVAF T0287 160 :EE 1a8y 257 :EA T0287 162 :VNFYANLKTIEQYN 1a8y 263 :YEFLEILKSVAQDN T0287 183 :MKFD 1a8y 292 :FPLL T0287 189 :KYMKEKGVQ 1a8y 298 :YWEKTFDID Number of specific fragments extracted= 18 number of extra gaps= 11 total=487 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2106917662.pdb -s /var/tmp/to_scwrl_2106917662.seq -o /var/tmp/from_scwrl_2106917662.pdb > /var/tmp/scwrl_2106917662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2106917662.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)M5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 2 :S 1a8y 20 :A T0287 6 :RKLFSM 1a8y 24 :KNVFKK T0287 13 :ADSKDKKEKL 1a8y 42 :EDDKASQRQF T0287 25 :SLQENEL 1a8y 54 :EELILEL T0287 33 :NTDEKKKII 1a8y 76 :DSEKDAAVA T0287 44 :IKTMHDFFKQMHT 1a8y 112 :ADTLVEFLLDVLE T0287 59 :GAL 1a8y 134 :REL T0287 64 :V 1a8y 139 :F T0287 65 :LRNYMKDY 1a8y 163 :FKEAAEEF T0287 73 :RAVIKS 1a8y 182 :SKVAKK T0287 82 :D 1a8y 191 :K T0287 85 :KKVYRLLES 1a8y 216 :EEIVNFVEE T0287 94 :ETMELLHAIAE 1a8y 264 :EFLEILKSVAQ T0287 105 :N 1a8y 276 :N T0287 125 :FSK 1a8y 279 :NPD T0287 130 :MFKMSIREMDSQ 1a8y 284 :IIWIDPDDFPLL T0287 144 :L 1a8y 298 :Y T0287 145 :YGTN 1a8y 305 :IDLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 21 number of extra gaps= 13 total=508 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_736597451.pdb -s /var/tmp/to_scwrl_736597451.seq -o /var/tmp/from_scwrl_736597451.pdb > /var/tmp/scwrl_736597451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736597451.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-local-adpstyle1.a2m # 1a8y read from T0287-1a8y-t2k-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=511 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-local-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)V156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :FFSKPIMFKMS 1a8y 298 :YWEKTFDIDLS T0287 137 :E 1a8y 311 :Q T0287 142 :IELYGTN 1a8y 312 :IGVVNVT T0287 151 :LLKLF 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=519 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_947974876.pdb -s /var/tmp/to_scwrl_947974876.seq -o /var/tmp/from_scwrl_947974876.pdb > /var/tmp/scwrl_947974876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_947974876.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIAENP 1a8y 263 :YEFLEILKSVAQDN T0287 112 :KFD 1a8y 279 :NPD T0287 117 :ILGIFL 1a8y 284 :IIWIDP T0287 125 :FSKPIM 1a8y 290 :DDFPLL T0287 133 :MSIREMD 1a8y 298 :YWEKTFD T0287 145 :YGTN 1a8y 305 :IDLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=527 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1053059195.pdb -s /var/tmp/to_scwrl_1053059195.seq -o /var/tmp/from_scwrl_1053059195.pdb > /var/tmp/scwrl_1053059195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053059195.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 79 :IGVDKFKKVYRLLES 1a8y 257 :EADPDGYEFLEILKS T0287 98 :LLHAI 1a8y 272 :VAQDN T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRS 1a8y 289 :PDDFPLL T0287 121 :FLPFFS 1a8y 303 :FDIDLS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :D 1a8y 321 :D T0287 142 :IELY 1a8y 322 :SVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 9 number of extra gaps= 5 total=536 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_130950752.pdb -s /var/tmp/to_scwrl_130950752.seq -o /var/tmp/from_scwrl_130950752.pdb > /var/tmp/scwrl_130950752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_130950752.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1a8y-t04-muscle.a2m.gz # 1a8y read from T0287-1a8y-t04-muscle.a2m.gz # found chain 1a8y in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)L22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)T170 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K184 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 T0287 3 :NNMRKLFSMIADSKDKK 1a8y 4 :LDFPEYDGVDRVINVNA T0287 23 :IESLQE 1a8y 24 :KNVFKK T0287 31 :LLNTDE 1a8y 32 :VLALLY T0287 39 :KIIDQIKTMHD 1a8y 40 :PPEDDKASQRQ T0287 52 :KQMHTNKGAL 1a8y 54 :EELILELAAQ T0287 62 :DKVLRNYMKDYRAVI 1a8y 70 :VGFGLVDSEKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAENP 1a8y 110 :FSADT T0287 110 :FSKFDRSILGIFLPFFS 1a8y 115 :LVEFLLDVLEDPVELIE T0287 129 :IMF 1a8y 134 :REL T0287 134 :SIREMD 1a8y 139 :FENIED T0287 142 :IELYGTNLP 1a8y 147 :KLIGYFKNK T0287 153 :KLFVMTDEEVNFYANL 1a8y 158 :EHYKAFKEAAEEFHPY T0287 171 :IEQYNDYVRDLL 1a8y 176 :FFATFDSKVAKK T0287 186 :D 1a8y 191 :K T0287 189 :KYMKEKGVQ 1a8y 194 :EIDFYEAFM Number of specific fragments extracted= 17 number of extra gaps= 15 total=553 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1802234086.pdb -s /var/tmp/to_scwrl_1802234086.seq -o /var/tmp/from_scwrl_1802234086.pdb > /var/tmp/scwrl_1802234086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802234086.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1a8y-t06-muscle.a2m.gz # 1a8y read from T0287-1a8y-t06-muscle.a2m.gz # found chain 1a8y in template set Warning: unaligning (T0287)M11 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)L31 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)L61 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 T0287 12 :IADSKDKKEKLIESLQE 1a8y 4 :LDFPEYDGVDRVINVNA T0287 32 :LNTDEK 1a8y 24 :KNVFKK T0287 40 :IIDQIK 1a8y 32 :VLALLY T0287 48 :HDFFKQMHTNKG 1a8y 40 :PPEDDKASQRQF T0287 62 :DKVLRNYMK 1a8y 54 :EELILELAA T0287 71 :DYRAVIKSIGVDKFKKVY 1a8y 67 :DKGVGFGLVDSEKDAAVA T0287 91 :LESETMELLHAIAEN 1a8y 87 :LGLTEEDSIYVFKED T0287 108 :FLFS 1a8y 104 :IEYD T0287 114 :DRSILGIFLPFFSKPIMFKM 1a8y 112 :ADTLVEFLLDVLEDPVELIE T0287 136 :REM 1a8y 134 :REL T0287 141 :QIELYG 1a8y 139 :FENIED T0287 149 :LPLLKLFVM 1a8y 147 :KLIGYFKNK T0287 160 :EEVNFYANLKTIEQYN 1a8y 158 :EHYKAFKEAAEEFHPY T0287 178 :VRDLLMKFDLEK 1a8y 176 :FFATFDSKVAKK T0287 193 :E 1a8y 191 :K T0287 196 :VQNA 1a8y 194 :EIDF Number of specific fragments extracted= 16 number of extra gaps= 14 total=569 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_531344227.pdb -s /var/tmp/to_scwrl_531344227.seq -o /var/tmp/from_scwrl_531344227.pdb > /var/tmp/scwrl_531344227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_531344227.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-muscle.a2m.gz # 1a8y read from T0287-1a8y-t2k-muscle.a2m.gz # found chain 1a8y in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 T0287 1 :MSNNMRKLFSMIA 1a8y 8 :EYDGVDRVINVNA T0287 17 :D 1a8y 24 :K T0287 24 :ESLQE 1a8y 25 :NVFKK T0287 31 :LLNTDE 1a8y 32 :VLALLY T0287 39 :KIIDQIKTMHDF 1a8y 40 :PPEDDKASQRQF T0287 51 :FKQMHTNKGALDKVLRNY 1a8y 58 :LELAAQVLEDKGVGFGLV T0287 69 :MKDYRAVI 1a8y 77 :SEKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAENP 1a8y 110 :FSADT T0287 107 :NFLFSKFDRSILGIF 1a8y 117 :EFLLDVLEDPVELIE T0287 124 :FFS 1a8y 134 :REL T0287 129 :IM 1a8y 139 :FE T0287 133 :MSIREMDSQIEL 1a8y 176 :FFATFDSKVAKK T0287 148 :N 1a8y 191 :K T0287 151 :LLKLFVMTD 1a8y 194 :EIDFYEAFM T0287 162 :VNFY 1a8y 205 :PVTI T0287 168 :LKTIEQY 1a8y 270 :KSVAQDN T0287 177 :YVR 1a8y 279 :NPD T0287 182 :LMKFDLEKYMKE 1a8y 284 :IIWIDPDDFPLL T0287 196 :VQNA 1a8y 298 :YWEK Number of specific fragments extracted= 21 number of extra gaps= 16 total=590 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1330362120.pdb -s /var/tmp/to_scwrl_1330362120.seq -o /var/tmp/from_scwrl_1330362120.pdb > /var/tmp/scwrl_1330362120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1330362120.pdb Number of alignments=39 # command:# Prefix for input files set to 1ahjA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahjA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ahjA-T0287-t2k-global-adpstyle1.a2m # 1ahjA read from 1ahjA-T0287-t2k-global-adpstyle1.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)R6 because first residue in template chain is (1ahjA)E10 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1ahjA 11 :NAAPAQAAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 68 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 166 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 4 number of extra gaps= 0 total=594 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_804650224.pdb -s /var/tmp/to_scwrl_804650224.seq -o /var/tmp/from_scwrl_804650224.pdb > /var/tmp/scwrl_804650224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_804650224.pdb Number of alignments=40 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahjA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ahjA-T0287-t2k-global-adpstyle5.a2m # 1ahjA read from 1ahjA-T0287-t2k-global-adpstyle5.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)R6 because first residue in template chain is (1ahjA)E10 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQM 1ahjA 11 :NAAPAQAAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGA T0287 55 :HTNKGALDKVLR 1ahjA 60 :LVARAWTDPEFR T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 73 :LLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLL 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASD T0287 153 :KLFVMTDEEVNFYANLK 1ahjA 157 :EIRVYDTTAETRYMVLP T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQN 1ahjA 175 :RPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=600 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1038399479.pdb -s /var/tmp/to_scwrl_1038399479.seq -o /var/tmp/from_scwrl_1038399479.pdb > /var/tmp/scwrl_1038399479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038399479.pdb Number of alignments=41 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahjA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ahjA-T0287-t2k-local-adpstyle1.a2m # 1ahjA read from 1ahjA-T0287-t2k-local-adpstyle1.a2m # found chain 1ahjA in template set T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=601 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2000540002.pdb -s /var/tmp/to_scwrl_2000540002.seq -o /var/tmp/from_scwrl_2000540002.pdb > /var/tmp/scwrl_2000540002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2000540002.pdb Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahjA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ahjA-T0287-t2k-local-adpstyle5.a2m # 1ahjA read from 1ahjA-T0287-t2k-local-adpstyle5.a2m # found chain 1ahjA in template set T0287 66 :RNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 72 :QLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS Number of specific fragments extracted= 2 number of extra gaps= 0 total=603 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_643972671.pdb -s /var/tmp/to_scwrl_643972671.seq -o /var/tmp/from_scwrl_643972671.pdb > /var/tmp/scwrl_643972671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_643972671.pdb Number of alignments=43 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # 1ahjA read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # found chain 1ahjA in template set T0287 4 :NMR 1ahjA 14 :PAQ T0287 13 :ADSKDKKEKLIESLQENELLNTD 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDG T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 40 :YVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLL 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASD T0287 153 :KLFV 1ahjA 157 :EIRV T0287 157 :MTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 162 :DTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 7 number of extra gaps= 0 total=610 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1063709421.pdb -s /var/tmp/to_scwrl_1063709421.seq -o /var/tmp/from_scwrl_1063709421.pdb > /var/tmp/scwrl_1063709421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1063709421.pdb Number of alignments=44 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # 1ahjA read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # found chain 1ahjA in template set T0287 109 :LFSKFDRSILGIFLPFFS 1ahjA 112 :LCSCTAWPILGLPPTWYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=611 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-simplesw-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-simplesw-adpstyle1.a2m # found chain 1ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 1ahjA 31 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=612 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-simplesw-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-simplesw-adpstyle5.a2m # found chain 1ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=612 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-global-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t04-global-adpstyle1.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MIADSK 1ahjA 11 :NAAPAQ T0287 17 :DKKEKLIESLQENELLNT 1ahjA 21 :DRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 39 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 172 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 6 number of extra gaps= 0 total=618 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1298207949.pdb -s /var/tmp/to_scwrl_1298207949.seq -o /var/tmp/from_scwrl_1298207949.pdb > /var/tmp/scwrl_1298207949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1298207949.pdb Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-global-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-global-adpstyle5.a2m # found chain 1ahjA in template set T0287 10 :SMIADSKDKKEKLIESLQENELLNTDE 1ahjA 14 :PAQAAVSDRAWALFRALDGKGLVPDGY T0287 44 :IKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 41 :VEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVC T0287 108 :FLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 111 :SLCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 1ahjA 158 :IRVYDTTAE T0287 162 :VNFYANLK 1ahjA 167 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 178 :GTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 7 number of extra gaps= 0 total=625 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1544221792.pdb -s /var/tmp/to_scwrl_1544221792.seq -o /var/tmp/from_scwrl_1544221792.pdb > /var/tmp/scwrl_1544221792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1544221792.pdb Number of alignments=46 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MI 1ahjA 11 :NA T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 1ahjA 43 :GWKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 1ahjA 68 :PEFRQL T0287 91 :LESET 1ahjA 74 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLPP T0287 166 :ANLKTIEQYNDYVR 1ahjA 126 :TWYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=634 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1617714077.pdb -s /var/tmp/to_scwrl_1617714077.seq -o /var/tmp/from_scwrl_1617714077.pdb > /var/tmp/scwrl_1617714077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617714077.pdb Number of alignments=47 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 85 :KKVYRLLESETMELLHAIAEN 1ahjA 131 :FEYRARVVREPRKVLSEMGTE T0287 113 :FDR 1ahjA 152 :IAS T0287 139 :DSQIELYGTNLPLLKLFVMT 1ahjA 155 :DIEIRVYDTTAETRYMVLPQ T0287 159 :DEEVNF 1ahjA 176 :PAGTEG T0287 169 :KTIEQYNDYV 1ahjA 182 :WSQEQLQEIV T0287 179 :RDLLMKFDL 1ahjA 193 :KDCLIGVAI T0287 195 :GVQNA 1ahjA 203 :QVPTV Number of specific fragments extracted= 10 number of extra gaps= 0 total=644 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_957430450.pdb -s /var/tmp/to_scwrl_957430450.seq -o /var/tmp/from_scwrl_957430450.pdb > /var/tmp/scwrl_957430450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_957430450.pdb Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-local-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t04-local-adpstyle1.a2m # found chain 1ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 1ahjA 31 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=645 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-local-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-local-adpstyle5.a2m # found chain 1ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=645 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 1ahjA 43 :GWKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 1ahjA 68 :PEFRQL T0287 91 :LESET 1ahjA 74 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLPP T0287 166 :ANLKTIEQYNDYVR 1ahjA 126 :TWYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 8 number of extra gaps= 0 total=653 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_121345830.pdb -s /var/tmp/to_scwrl_121345830.seq -o /var/tmp/from_scwrl_121345830.pdb > /var/tmp/scwrl_121345830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121345830.pdb Number of alignments=49 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFK 1ahjA 90 :PQGEYIVAVEDTPTLKNVIVCSLCSCTAWP T0287 144 :LYGT 1ahjA 120 :ILGL T0287 158 :TD 1ahjA 124 :PP T0287 163 :NFYANLK 1ahjA 126 :TWYKSFE T0287 174 :YNDYVRD 1ahjA 133 :YRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=662 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1001771082.pdb -s /var/tmp/to_scwrl_1001771082.seq -o /var/tmp/from_scwrl_1001771082.pdb > /var/tmp/scwrl_1001771082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001771082.pdb Number of alignments=50 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-global-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t06-global-adpstyle1.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MIADSK 1ahjA 11 :NAAPAQ T0287 17 :DKKEKLIESLQENELLNT 1ahjA 21 :DRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 39 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 172 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 6 number of extra gaps= 0 total=668 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_956060424.pdb -s /var/tmp/to_scwrl_956060424.seq -o /var/tmp/from_scwrl_956060424.pdb > /var/tmp/scwrl_956060424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_956060424.pdb Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-global-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-global-adpstyle5.a2m # found chain 1ahjA in template set T0287 10 :SMIADSKDKKEKLIESLQENELLNTDE 1ahjA 14 :PAQAAVSDRAWALFRALDGKGLVPDGY T0287 44 :IKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 41 :VEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVC T0287 108 :FLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 111 :SLCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 1ahjA 158 :IRVYDTTAE T0287 162 :VNFYANLK 1ahjA 167 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 178 :GTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 7 number of extra gaps= 0 total=675 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1865251812.pdb -s /var/tmp/to_scwrl_1865251812.seq -o /var/tmp/from_scwrl_1865251812.pdb > /var/tmp/scwrl_1865251812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865251812.pdb Number of alignments=52 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MI 1ahjA 11 :NA T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 1ahjA 43 :GWKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 1ahjA 68 :PEFRQL T0287 91 :LESET 1ahjA 74 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLPP T0287 166 :ANLKTIEQYNDYVR 1ahjA 126 :TWYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=684 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1607101546.pdb -s /var/tmp/to_scwrl_1607101546.seq -o /var/tmp/from_scwrl_1607101546.pdb > /var/tmp/scwrl_1607101546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1607101546.pdb Number of alignments=53 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 85 :KKVYRLLESETMELLHAIAEN 1ahjA 131 :FEYRARVVREPRKVLSEMGTE T0287 113 :FDR 1ahjA 152 :IAS T0287 139 :DSQIELYGTNLPLLKLFVMT 1ahjA 155 :DIEIRVYDTTAETRYMVLPQ T0287 159 :DEEVNF 1ahjA 176 :PAGTEG T0287 169 :KTIEQYNDYV 1ahjA 182 :WSQEQLQEIV T0287 179 :RDLLMKFDL 1ahjA 193 :KDCLIGVAI T0287 195 :GVQNA 1ahjA 203 :QVPTV Number of specific fragments extracted= 10 number of extra gaps= 0 total=694 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2020225050.pdb -s /var/tmp/to_scwrl_2020225050.seq -o /var/tmp/from_scwrl_2020225050.pdb > /var/tmp/scwrl_2020225050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2020225050.pdb Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-local-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t06-local-adpstyle1.a2m # found chain 1ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 1ahjA 31 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=695 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-local-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-local-adpstyle5.a2m # found chain 1ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=695 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 1ahjA 43 :GWKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 1ahjA 68 :PEFRQL T0287 91 :LESET 1ahjA 74 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLPP T0287 166 :ANLKTIEQYNDYVR 1ahjA 126 :TWYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 8 number of extra gaps= 0 total=703 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_186336410.pdb -s /var/tmp/to_scwrl_186336410.seq -o /var/tmp/from_scwrl_186336410.pdb > /var/tmp/scwrl_186336410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_186336410.pdb Number of alignments=55 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFK 1ahjA 90 :PQGEYIVAVEDTPTLKNVIVCSLCSCTAWP T0287 144 :LYGT 1ahjA 120 :ILGL T0287 158 :TD 1ahjA 124 :PP T0287 163 :NFYANLK 1ahjA 126 :TWYKSFE T0287 174 :YNDYVRD 1ahjA 133 :YRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=712 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1031872872.pdb -s /var/tmp/to_scwrl_1031872872.seq -o /var/tmp/from_scwrl_1031872872.pdb > /var/tmp/scwrl_1031872872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031872872.pdb Number of alignments=56 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-global-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t2k-global-adpstyle1.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MIADSK 1ahjA 11 :NAAPAQ T0287 17 :DKKEKLIESLQENELLNT 1ahjA 21 :DRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 39 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 172 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 6 number of extra gaps= 0 total=718 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_360305782.pdb -s /var/tmp/to_scwrl_360305782.seq -o /var/tmp/from_scwrl_360305782.pdb > /var/tmp/scwrl_360305782.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_360305782.pdb Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-global-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-global-adpstyle5.a2m # found chain 1ahjA in template set T0287 10 :SMIADSKDKKEKLIESLQENELLNTDE 1ahjA 14 :PAQAAVSDRAWALFRALDGKGLVPDGY T0287 44 :IKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 41 :VEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVC T0287 108 :FLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 111 :SLCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 1ahjA 158 :IRVYDTTAE T0287 162 :VNFYANLK 1ahjA 167 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 178 :GTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 7 number of extra gaps= 0 total=725 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_550119101.pdb -s /var/tmp/to_scwrl_550119101.seq -o /var/tmp/from_scwrl_550119101.pdb > /var/tmp/scwrl_550119101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_550119101.pdb Number of alignments=58 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MI 1ahjA 11 :NA T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTF T0287 45 :KTMHDFFKQMHTNKGALDK 1ahjA 55 :RRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 1ahjA 74 :LLTDGTAAVAQYGY T0287 94 :ETMELLHAIAENPNFLFSKFDRSI 1ahjA 129 :KSFEYRARVVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVMTDEEVN 1ahjA 153 :ASDIEIRVYDTTAETRYMVLPQRPAGT T0287 167 :NLKTIEQYNDYV 1ahjA 180 :EGWSQEQLQEIV T0287 179 :RDLLMKFDLE 1ahjA 193 :KDCLIGVAIP T0287 195 :GVQNA 1ahjA 203 :QVPTV Number of specific fragments extracted= 9 number of extra gaps= 0 total=734 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_103914848.pdb -s /var/tmp/to_scwrl_103914848.seq -o /var/tmp/from_scwrl_103914848.pdb > /var/tmp/scwrl_103914848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_103914848.pdb Number of alignments=59 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 85 :KKVYRLLESETMELLHAIAEN 1ahjA 131 :FEYRARVVREPRKVLSEMGTE T0287 113 :FDR 1ahjA 152 :IAS T0287 139 :DSQIELYGTNLPLLKLFVMT 1ahjA 155 :DIEIRVYDTTAETRYMVLPQ T0287 159 :DEEVNF 1ahjA 176 :PAGTEG T0287 169 :KTIEQYNDYV 1ahjA 182 :WSQEQLQEIV T0287 179 :RDLLMKFDL 1ahjA 193 :KDCLIGVAI T0287 195 :GVQNA 1ahjA 203 :QVPTV Number of specific fragments extracted= 10 number of extra gaps= 0 total=744 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2141075413.pdb -s /var/tmp/to_scwrl_2141075413.seq -o /var/tmp/from_scwrl_2141075413.pdb > /var/tmp/scwrl_2141075413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2141075413.pdb Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-local-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t2k-local-adpstyle1.a2m # found chain 1ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 1ahjA 31 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=745 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-local-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-local-adpstyle5.a2m # found chain 1ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=745 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIID 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKK T0287 50 :FFKQMHTNKGALDKVLRNYM 1ahjA 47 :TFEEDFSPRRGAELVARAWT T0287 81 :VDKFKK 1ahjA 67 :DPEFRQ T0287 90 :LLESET 1ahjA 73 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLP 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLP T0287 162 :VN 1ahjA 125 :PT T0287 167 :NLKTIEQYNDYVR 1ahjA 127 :WYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=754 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2025504040.pdb -s /var/tmp/to_scwrl_2025504040.seq -o /var/tmp/from_scwrl_2025504040.pdb > /var/tmp/scwrl_2025504040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2025504040.pdb Number of alignments=61 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFK 1ahjA 90 :PQGEYIVAVEDTPTLKNVIVCSLCSCTAWP T0287 144 :LYGT 1ahjA 120 :ILGL T0287 158 :TD 1ahjA 124 :PP T0287 163 :NFYANLK 1ahjA 126 :TWYKSFE T0287 174 :YNDYVRD 1ahjA 133 :YRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=763 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1306599369.pdb -s /var/tmp/to_scwrl_1306599369.seq -o /var/tmp/from_scwrl_1306599369.pdb > /var/tmp/scwrl_1306599369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306599369.pdb Number of alignments=62 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-muscle.a2m.gz # 1ahjA read from T0287-1ahjA-t2k-muscle.a2m.gz # found chain 1ahjA in template set Warning: unaligning (T0287)R6 because first residue in template chain is (1ahjA)E10 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 11 :NAAPAQAAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 1ahjA 52 :FSPRRGAELVARAWTDPEFRQLL T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 76 :TDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 166 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 5 number of extra gaps= 0 total=768 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2100509428.pdb -s /var/tmp/to_scwrl_2100509428.seq -o /var/tmp/from_scwrl_2100509428.pdb > /var/tmp/scwrl_2100509428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2100509428.pdb Number of alignments=63 # command:# Prefix for input files set to 1alvA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-fssp-global-adpstyle5.a2m # 1alvA read from 1alvA-T0287-fssp-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIADS 1alvA 95 :EVRQFRRLFAQLAGD T0287 19 :KEKLIESLQ 1alvA 115 :ATELMNILN T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKV 1alvA 137 :FGIDTCRSMVAVMDSDTTGKLGFEEF T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1alvA 165 :LWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAA T0287 100 :HAIAENPNFLFSKFD 1alvA 202 :HLNEHLYSMIIRRYS T0287 120 :IFLPFFSKPIMFKMSIREMDSQIELYGT 1alvA 222 :MDFDNFISCLVRLDAMFRAFKSLDKDGT T0287 184 :KFDLEKYMK 1alvA 253 :QVNIQEWLQ T0287 195 :GVQNA 1alvA 262 :LTMYS Number of specific fragments extracted= 9 number of extra gaps= 0 total=777 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_614617844.pdb -s /var/tmp/to_scwrl_614617844.seq -o /var/tmp/from_scwrl_614617844.pdb > /var/tmp/scwrl_614617844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_614617844.pdb Number of alignments=64 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-fssp-local-adpstyle5.a2m # 1alvA read from 1alvA-T0287-fssp-local-adpstyle5.a2m # found chain 1alvA in template set T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKV 1alvA 134 :TDGFGIDTCRSMVAVMDSDTTGKLGFEEF T0287 65 :LRNYMKDYRAVIKSIGVDKF 1alvA 165 :LWNNIKKWQAIYKQFDVDRS Number of specific fragments extracted= 2 number of extra gaps= 0 total=779 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_107090598.pdb -s /var/tmp/to_scwrl_107090598.seq -o /var/tmp/from_scwrl_107090598.pdb > /var/tmp/scwrl_107090598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107090598.pdb Number of alignments=65 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t04-global-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t04-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 26 :LQ 1alvA 108 :GD T0287 29 :NELLNTDEKKKIIDQIKTM 1alvA 110 :DMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLLES 1alvA 155 :GKLGFEEFKYLWNNIKK T0287 151 :LLKLFVMTD 1alvA 172 :WQAIYKQFD T0287 160 :EEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 197 :EAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDA Number of specific fragments extracted= 7 number of extra gaps= 1 total=786 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1006084976.pdb -s /var/tmp/to_scwrl_1006084976.seq -o /var/tmp/from_scwrl_1006084976.pdb > /var/tmp/scwrl_1006084976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006084976.pdb Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t04-global-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t04-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)Q197 because last residue in template chain is (1alvA)S266 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 26 :LQ 1alvA 108 :GD T0287 29 :NELLNTDEKKKIIDQIKTM 1alvA 110 :DMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 78 :SIGVDKFKKVYRLLES 1alvA 156 :KLGFEEFKYLWNNIKK T0287 151 :LLKLFVMTD 1alvA 172 :WQAIYKQFD T0287 160 :EEVN 1alvA 206 :HLYS T0287 164 :FYANLKTI 1alvA 227 :FISCLVRL T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGV 1alvA 241 :FKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 9 number of extra gaps= 1 total=795 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_745568596.pdb -s /var/tmp/to_scwrl_745568596.seq -o /var/tmp/from_scwrl_745568596.pdb > /var/tmp/scwrl_745568596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745568596.pdb Number of alignments=67 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t04-local-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t04-local-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D42 because first residue in template chain is (1alvA)E94 T0287 43 :QIKTMHDFFKQMHTNKGALDK 1alvA 95 :EVRQFRRLFAQLAGDDMEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=796 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1909324685.pdb -s /var/tmp/to_scwrl_1909324685.seq -o /var/tmp/from_scwrl_1909324685.pdb > /var/tmp/scwrl_1909324685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909324685.pdb Number of alignments=68 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t04-local-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t04-local-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 43 :QIKTMHDFFKQMHTNKGALDKV 1alvA 95 :EVRQFRRLFAQLAGDDMEVSAT T0287 65 :LRNYMKDYRAV 1alvA 118 :LMNILNKVVTR T0287 78 :SIGVDKF 1alvA 131 :DLKTDGF T0287 85 :KKVYRLLES 1alvA 163 :KYLWNNIKK T0287 106 :PNFLFSKFDR 1alvA 172 :WQAIYKQFDV Number of specific fragments extracted= 5 number of extra gaps= 1 total=801 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1537429203.pdb -s /var/tmp/to_scwrl_1537429203.seq -o /var/tmp/from_scwrl_1537429203.pdb > /var/tmp/scwrl_1537429203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537429203.pdb Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t06-global-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t06-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)Q197 because last residue in template chain is (1alvA)S266 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 15 :SKDK 1alvA 108 :GDDM T0287 31 :LLNTDEKKKIIDQIKTM 1alvA 112 :EVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLL 1alvA 155 :GKLGFEEFKYLWNNI T0287 104 :ENPNFLFSKFDR 1alvA 170 :KKWQAIYKQFDV T0287 116 :SILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1alvA 186 :TIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQ T0287 185 :FDLEKYMKEKGV 1alvA 254 :VNIQEWLQLTMY Number of specific fragments extracted= 8 number of extra gaps= 1 total=809 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2075930716.pdb -s /var/tmp/to_scwrl_2075930716.seq -o /var/tmp/from_scwrl_2075930716.pdb > /var/tmp/scwrl_2075930716.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2075930716.pdb Number of alignments=70 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t06-global-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t06-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)Q197 because last residue in template chain is (1alvA)S266 T0287 2 :SNNMRKLFSMIA 1alvA 96 :VRQFRRLFAQLA T0287 15 :SKDK 1alvA 108 :GDDM T0287 31 :LLNTDEKKKIIDQIKTM 1alvA 112 :EVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLL 1alvA 155 :GKLGFEEFKYLWNNI T0287 104 :ENPNFLFSKFDRS 1alvA 170 :KKWQAIYKQFDVD T0287 118 :LGIFLPF 1alvA 193 :PGAFEAA T0287 130 :MFKMSIREMDSQIELYG 1alvA 200 :GFHLNEHLYSMIIRRYS T0287 148 :NL 1alvA 217 :DE T0287 153 :KLFVMTDEEVNFYANLKT 1alvA 219 :GGNMDFDNFISCLVRLDA T0287 171 :IEQYNDYVRDLLMKFDLEKYMKEKGV 1alvA 240 :AFKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 11 number of extra gaps= 1 total=820 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_566491262.pdb -s /var/tmp/to_scwrl_566491262.seq -o /var/tmp/from_scwrl_566491262.pdb > /var/tmp/scwrl_566491262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_566491262.pdb Number of alignments=71 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t06-local-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t06-local-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 28 :ENELLNTDEKKKIIDQIKTM 1alvA 109 :DDMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLL 1alvA 155 :GKLGFEEFKYLWNNI T0287 104 :ENPNFLFSKFDR 1alvA 170 :KKWQAIYKQFDV Number of specific fragments extracted= 4 number of extra gaps= 1 total=824 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_428345035.pdb -s /var/tmp/to_scwrl_428345035.seq -o /var/tmp/from_scwrl_428345035.pdb > /var/tmp/scwrl_428345035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428345035.pdb Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t06-local-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t06-local-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 31 :LLNTDEKKKIIDQIKTM 1alvA 112 :EVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLL 1alvA 155 :GKLGFEEFKYLWNNI T0287 104 :ENPNFLFSKFDRS 1alvA 170 :KKWQAIYKQFDVD Number of specific fragments extracted= 4 number of extra gaps= 1 total=828 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1928987071.pdb -s /var/tmp/to_scwrl_1928987071.seq -o /var/tmp/from_scwrl_1928987071.pdb > /var/tmp/scwrl_1928987071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1928987071.pdb Number of alignments=73 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t2k-global-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t2k-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 15 :SKDKK 1alvA 108 :GDDME T0287 32 :LNTDEKKKIIDQIKTM 1alvA 113 :VSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKD 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSD T0287 75 :VIKSIGVDKFKKVYRL 1alvA 153 :TTGKLGFEEFKYLWNN T0287 148 :NLPLLKLFVMTDE 1alvA 169 :IKKWQAIYKQFDV T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 198 :AAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDA Number of specific fragments extracted= 7 number of extra gaps= 1 total=835 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1210463932.pdb -s /var/tmp/to_scwrl_1210463932.seq -o /var/tmp/from_scwrl_1210463932.pdb > /var/tmp/scwrl_1210463932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1210463932.pdb Number of alignments=74 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t2k-global-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t2k-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 15 :SKDKK 1alvA 108 :GDDME T0287 32 :LNTDEKKKIIDQIKTM 1alvA 113 :VSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRL 1alvA 155 :GKLGFEEFKYLWNN T0287 103 :AENPNFLFSKFDRS 1alvA 169 :IKKWQAIYKQFDVD T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYG 1alvA 187 :IGSSELPGAFEAAGFHLNEHLYSMIIRRYS T0287 148 :NLPLL 1alvA 217 :DEGGN T0287 156 :VMTDEEVN 1alvA 222 :MDFDNFIS T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEK 1alvA 233 :RLDAMFRAFKSLDKDGTGQIQVNIQEWLQLT T0287 197 :QNA 1alvA 264 :MYS Number of specific fragments extracted= 11 number of extra gaps= 1 total=846 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1492054455.pdb -s /var/tmp/to_scwrl_1492054455.seq -o /var/tmp/from_scwrl_1492054455.pdb > /var/tmp/scwrl_1492054455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1492054455.pdb Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t2k-local-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t2k-local-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D42 because first residue in template chain is (1alvA)E94 T0287 43 :QIKTMHDFFKQMHTNKGALDK 1alvA 95 :EVRQFRRLFAQLAGDDMEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=847 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1079711374.pdb -s /var/tmp/to_scwrl_1079711374.seq -o /var/tmp/from_scwrl_1079711374.pdb > /var/tmp/scwrl_1079711374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1079711374.pdb Number of alignments=76 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t2k-local-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t2k-local-adpstyle5.a2m # found chain 1alvA in template set T0287 78 :SIGVDKFKKVYRL 1alvA 156 :KLGFEEFKYLWNN T0287 103 :AENPNFLFSKFDR 1alvA 169 :IKKWQAIYKQFDV Number of specific fragments extracted= 2 number of extra gaps= 0 total=849 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_607202079.pdb -s /var/tmp/to_scwrl_607202079.seq -o /var/tmp/from_scwrl_607202079.pdb > /var/tmp/scwrl_607202079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_607202079.pdb Number of alignments=77 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-simplesw-adpstyle1.a2m # 1alvA read from T0287-1alvA-simplesw-adpstyle1.a2m # found chain 1alvA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=850 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_962284887.pdb -s /var/tmp/to_scwrl_962284887.seq -o /var/tmp/from_scwrl_962284887.pdb > /var/tmp/scwrl_962284887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962284887.pdb Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-simplesw-adpstyle5.a2m # 1alvA read from T0287-1alvA-simplesw-adpstyle5.a2m # found chain 1alvA in template set T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGT Number of specific fragments extracted= 2 number of extra gaps= 0 total=852 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2037141824.pdb -s /var/tmp/to_scwrl_2037141824.seq -o /var/tmp/from_scwrl_2037141824.pdb > /var/tmp/scwrl_2037141824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2037141824.pdb Number of alignments=79 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-global-adpstyle1.a2m # 1alvA read from T0287-1alvA-t04-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)E193 because last residue in template chain is (1alvA)S266 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 1alvA 97 :RQFRRLFAQLAGDDMEVSATELMNILNKVVTR T0287 37 :KKKI 1alvA 131 :DLKT T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG T0287 124 :FFSKPIMFKMSIREMDSQ 1alvA 201 :FHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 7 number of extra gaps= 1 total=859 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_728547909.pdb -s /var/tmp/to_scwrl_728547909.seq -o /var/tmp/from_scwrl_728547909.pdb > /var/tmp/scwrl_728547909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_728547909.pdb Number of alignments=80 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-global-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 40 :IIDQIKTMHDFFKQMHTNKGALD 1alvA 138 :GIDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYR 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGS T0287 96 :MELLHAI 1alvA 190 :SELPGAF T0287 104 :ENP 1alvA 197 :EAA T0287 123 :PFFSKPIMFKMSIREMDSQ 1alvA 200 :GFHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYV 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQ T0287 183 :MKFDLEKYMKEK 1alvA 252 :IQVNIQEWLQLT T0287 197 :QNA 1alvA 264 :MYS Number of specific fragments extracted= 12 number of extra gaps= 1 total=871 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1964055968.pdb -s /var/tmp/to_scwrl_1964055968.seq -o /var/tmp/from_scwrl_1964055968.pdb > /var/tmp/scwrl_1964055968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964055968.pdb Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQE 1alvA 119 :MNILNKVVTR T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR T0287 93 :SETMEL 1alvA 190 :SELPGA T0287 103 :AENPNFLFSKFDRSI 1alvA 196 :FEAAGFHLNEHLYSM T0287 134 :SIREMDSQ 1alvA 211 :IIRRYSDE T0287 146 :GTNLPL 1alvA 219 :GGNMDF T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 12 number of extra gaps= 1 total=883 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_845718601.pdb -s /var/tmp/to_scwrl_845718601.seq -o /var/tmp/from_scwrl_845718601.pdb > /var/tmp/scwrl_845718601.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_845718601.pdb Number of alignments=82 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQEN 1alvA 115 :ATELMNILNKV T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :ID 1alvA 139 :ID T0287 46 :TMHDFFKQMHTNK 1alvA 141 :TCRSMVAVMDSDT T0287 59 :GAL 1alvA 160 :EEF T0287 63 :KVLRNYMKDYRAVIKSI 1alvA 163 :KYLWNNIKKWQAIYKQF T0287 80 :GVDKFKKVYRLL 1alvA 188 :GSSELPGAFEAA T0287 92 :ESETMELLHAIAENPNFL 1alvA 205 :EHLYSMIIRRYSDEGGNM T0287 111 :S 1alvA 223 :D T0287 113 :F 1alvA 224 :F T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 14 number of extra gaps= 1 total=897 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_446316074.pdb -s /var/tmp/to_scwrl_446316074.seq -o /var/tmp/from_scwrl_446316074.pdb > /var/tmp/scwrl_446316074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_446316074.pdb Number of alignments=83 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-local-adpstyle1.a2m # 1alvA read from T0287-1alvA-t04-local-adpstyle1.a2m # found chain 1alvA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=898 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1423673868.pdb -s /var/tmp/to_scwrl_1423673868.seq -o /var/tmp/from_scwrl_1423673868.pdb > /var/tmp/scwrl_1423673868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423673868.pdb Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-local-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-local-adpstyle5.a2m # found chain 1alvA in template set T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKV 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=900 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_718460005.pdb -s /var/tmp/to_scwrl_718460005.seq -o /var/tmp/from_scwrl_718460005.pdb > /var/tmp/scwrl_718460005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_718460005.pdb Number of alignments=85 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 4 :NMRKLFSMIADSKDK 1alvA 98 :QFRRLFAQLAGDDME T0287 19 :KEKLIESLQE 1alvA 119 :MNILNKVVTR T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR T0287 84 :FKKVY 1alvA 192 :LPGAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=906 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_632652485.pdb -s /var/tmp/to_scwrl_632652485.seq -o /var/tmp/from_scwrl_632652485.pdb > /var/tmp/scwrl_632652485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_632652485.pdb Number of alignments=86 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set T0287 15 :SKDKKEKLIESLQENE 1alvA 138 :GIDTCRSMVAVMDSDT T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNK 1alvA 156 :KLGFEEFKYLWNNIKKWQAIYKQFDVDR T0287 69 :MKDYRAVIKSIGVDKFKKVYRL 1alvA 189 :SSELPGAFEAAGFHLNEHLYSM T0287 98 :LLHAIAENPN 1alvA 211 :IIRRYSDEGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=910 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_308063093.pdb -s /var/tmp/to_scwrl_308063093.seq -o /var/tmp/from_scwrl_308063093.pdb > /var/tmp/scwrl_308063093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_308063093.pdb Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-global-adpstyle1.a2m # 1alvA read from T0287-1alvA-t06-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)E193 because last residue in template chain is (1alvA)S266 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 1alvA 97 :RQFRRLFAQLAGDDMEVSATELMNILNKVVTR T0287 37 :KKKI 1alvA 131 :DLKT T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG T0287 124 :FFSKPIMFKMSIREMDSQ 1alvA 201 :FHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 7 number of extra gaps= 1 total=917 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1078765786.pdb -s /var/tmp/to_scwrl_1078765786.seq -o /var/tmp/from_scwrl_1078765786.pdb > /var/tmp/scwrl_1078765786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078765786.pdb Number of alignments=88 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-global-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 40 :IIDQIKTMHDFFKQMHTNKGALD 1alvA 138 :GIDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYR 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGS T0287 96 :MELLHAI 1alvA 190 :SELPGAF T0287 104 :ENP 1alvA 197 :EAA T0287 123 :PFFSKPIMFKMSIREMDSQ 1alvA 200 :GFHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYV 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQ T0287 183 :MKFDLEKYMKEK 1alvA 252 :IQVNIQEWLQLT T0287 197 :QNA 1alvA 264 :MYS Number of specific fragments extracted= 12 number of extra gaps= 1 total=929 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1182771585.pdb -s /var/tmp/to_scwrl_1182771585.seq -o /var/tmp/from_scwrl_1182771585.pdb > /var/tmp/scwrl_1182771585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182771585.pdb Number of alignments=89 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQE 1alvA 119 :MNILNKVVTR T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR T0287 93 :SETMEL 1alvA 190 :SELPGA T0287 103 :AENPNFLFSKFDRSI 1alvA 196 :FEAAGFHLNEHLYSM T0287 134 :SIREMDSQ 1alvA 211 :IIRRYSDE T0287 146 :GTNLPL 1alvA 219 :GGNMDF T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 12 number of extra gaps= 1 total=941 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_411977942.pdb -s /var/tmp/to_scwrl_411977942.seq -o /var/tmp/from_scwrl_411977942.pdb > /var/tmp/scwrl_411977942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411977942.pdb Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQEN 1alvA 115 :ATELMNILNKV T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :ID 1alvA 139 :ID T0287 46 :TMHDFFKQMHTNK 1alvA 141 :TCRSMVAVMDSDT T0287 59 :GAL 1alvA 160 :EEF T0287 63 :KVLRNYMKDYRAVIKSI 1alvA 163 :KYLWNNIKKWQAIYKQF T0287 80 :GVDKFKKVYRLL 1alvA 188 :GSSELPGAFEAA T0287 92 :ESETMELLHAIAENPNFL 1alvA 205 :EHLYSMIIRRYSDEGGNM T0287 111 :S 1alvA 223 :D T0287 113 :F 1alvA 224 :F T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 14 number of extra gaps= 1 total=955 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1072357554.pdb -s /var/tmp/to_scwrl_1072357554.seq -o /var/tmp/from_scwrl_1072357554.pdb > /var/tmp/scwrl_1072357554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072357554.pdb Number of alignments=91 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-local-adpstyle1.a2m # 1alvA read from T0287-1alvA-t06-local-adpstyle1.a2m # found chain 1alvA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=956 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1060791979.pdb -s /var/tmp/to_scwrl_1060791979.seq -o /var/tmp/from_scwrl_1060791979.pdb > /var/tmp/scwrl_1060791979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1060791979.pdb Number of alignments=92 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-local-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-local-adpstyle5.a2m # found chain 1alvA in template set T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKV 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=958 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1718577311.pdb -s /var/tmp/to_scwrl_1718577311.seq -o /var/tmp/from_scwrl_1718577311.pdb > /var/tmp/scwrl_1718577311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1718577311.pdb Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 4 :NMRKLFSMIADSKDK 1alvA 98 :QFRRLFAQLAGDDME T0287 19 :KEKLIESLQE 1alvA 119 :MNILNKVVTR T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR T0287 84 :FKKVY 1alvA 192 :LPGAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=964 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1025383335.pdb -s /var/tmp/to_scwrl_1025383335.seq -o /var/tmp/from_scwrl_1025383335.pdb > /var/tmp/scwrl_1025383335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1025383335.pdb Number of alignments=94 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set T0287 15 :SKDKKEKLIESLQENE 1alvA 138 :GIDTCRSMVAVMDSDT T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNK 1alvA 156 :KLGFEEFKYLWNNIKKWQAIYKQFDVDR T0287 69 :MKDYRAVIKSIGVDKFKKVYRL 1alvA 189 :SSELPGAFEAAGFHLNEHLYSM T0287 98 :LLHAIAENPN 1alvA 211 :IIRRYSDEGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=968 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1675409822.pdb -s /var/tmp/to_scwrl_1675409822.seq -o /var/tmp/from_scwrl_1675409822.pdb > /var/tmp/scwrl_1675409822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1675409822.pdb Number of alignments=95 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-global-adpstyle1.a2m # 1alvA read from T0287-1alvA-t2k-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)E193 because last residue in template chain is (1alvA)S266 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 1alvA 97 :RQFRRLFAQLAGDDMEVSATELMNILNKVVTR T0287 37 :KKKI 1alvA 131 :DLKT T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG T0287 124 :FFSKPIMFKMSIREMDSQ 1alvA 201 :FHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 7 number of extra gaps= 1 total=975 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1825667909.pdb -s /var/tmp/to_scwrl_1825667909.seq -o /var/tmp/from_scwrl_1825667909.pdb > /var/tmp/scwrl_1825667909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1825667909.pdb Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-global-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 40 :IIDQIKTMHDFFKQMHTNKGALD 1alvA 138 :GIDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYR 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGS T0287 96 :MELLHAI 1alvA 190 :SELPGAF T0287 104 :ENP 1alvA 197 :EAA T0287 123 :PFFSKPIMFKMSIREMDSQ 1alvA 200 :GFHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYV 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQ T0287 183 :MKFDLEKYMKEK 1alvA 252 :IQVNIQEWLQLT T0287 197 :QNA 1alvA 264 :MYS Number of specific fragments extracted= 12 number of extra gaps= 1 total=987 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2031468311.pdb -s /var/tmp/to_scwrl_2031468311.seq -o /var/tmp/from_scwrl_2031468311.pdb > /var/tmp/scwrl_2031468311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2031468311.pdb Number of alignments=97 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVY 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIG T0287 92 :ESETME 1alvA 189 :SSELPG T0287 102 :IAENPNFLFSKFDRSI 1alvA 195 :AFEAAGFHLNEHLYSM T0287 134 :SIREMDSQ 1alvA 211 :IIRRYSDE T0287 146 :GTNLPL 1alvA 219 :GGNMDF T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 12 number of extra gaps= 1 total=999 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_273494771.pdb -s /var/tmp/to_scwrl_273494771.seq -o /var/tmp/from_scwrl_273494771.pdb > /var/tmp/scwrl_273494771.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_273494771.pdb Number of alignments=98 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQEN 1alvA 115 :ATELMNILNKV T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :ID 1alvA 139 :ID T0287 46 :TMHDFFKQMHTNK 1alvA 141 :TCRSMVAVMDSDT T0287 59 :GAL 1alvA 160 :EEF T0287 63 :KVLRNYMKDYRAVIKSI 1alvA 163 :KYLWNNIKKWQAIYKQF T0287 80 :GVDKFKKVYRLL 1alvA 188 :GSSELPGAFEAA T0287 92 :ESETMELLHAIAENPNFL 1alvA 205 :EHLYSMIIRRYSDEGGNM T0287 111 :S 1alvA 223 :D T0287 113 :F 1alvA 224 :F T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 14 number of extra gaps= 1 total=1013 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1587508947.pdb -s /var/tmp/to_scwrl_1587508947.seq -o /var/tmp/from_scwrl_1587508947.pdb > /var/tmp/scwrl_1587508947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1587508947.pdb Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-local-adpstyle1.a2m # 1alvA read from T0287-1alvA-t2k-local-adpstyle1.a2m # found chain 1alvA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1014 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1421413867.pdb -s /var/tmp/to_scwrl_1421413867.seq -o /var/tmp/from_scwrl_1421413867.pdb > /var/tmp/scwrl_1421413867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1421413867.pdb Number of alignments=100 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-local-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-local-adpstyle5.a2m # found chain 1alvA in template set T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKV 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1016 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_201941840.pdb -s /var/tmp/to_scwrl_201941840.seq -o /var/tmp/from_scwrl_201941840.pdb > /var/tmp/scwrl_201941840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_201941840.pdb Number of alignments=101 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKV 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTI T0287 91 :LESETMELLHAI 1alvA 188 :GSSELPGAFEAA T0287 107 :N 1alvA 200 :G Number of specific fragments extracted= 7 number of extra gaps= 1 total=1023 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_6516562.pdb -s /var/tmp/to_scwrl_6516562.seq -o /var/tmp/from_scwrl_6516562.pdb > /var/tmp/scwrl_6516562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6516562.pdb Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set T0287 15 :SKDKKEKLIESLQENE 1alvA 138 :GIDTCRSMVAVMDSDT T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNK 1alvA 156 :KLGFEEFKYLWNNIKKWQAIYKQFDVDR T0287 69 :MKDYRAVIKSIGVDKFKKVYRL 1alvA 189 :SSELPGAFEAAGFHLNEHLYSM T0287 98 :LLHAIAENPN 1alvA 211 :IIRRYSDEGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1027 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1849758902.pdb -s /var/tmp/to_scwrl_1849758902.seq -o /var/tmp/from_scwrl_1849758902.pdb > /var/tmp/scwrl_1849758902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1849758902.pdb Number of alignments=103 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1alvA-t04-muscle.a2m.gz # 1alvA read from T0287-1alvA-t04-muscle.a2m.gz # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 27 :QENELLNTDEKKKIIDQIKTM 1alvA 108 :GDDMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRA 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTTG T0287 78 :SIGVDKFKKVYRLLE 1alvA 156 :KLGFEEFKYLWNNIK T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIE 1alvA 171 :KWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYS T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 210 :MIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEW Number of specific fragments extracted= 6 number of extra gaps= 1 total=1033 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2130928911.pdb -s /var/tmp/to_scwrl_2130928911.seq -o /var/tmp/from_scwrl_2130928911.pdb > /var/tmp/scwrl_2130928911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130928911.pdb Number of alignments=104 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1alvA-t06-muscle.a2m.gz # 1alvA read from T0287-1alvA-t06-muscle.a2m.gz # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIAD 1alvA 95 :EVRQFRRLFAQLAG T0287 28 :ENELLNTDEKKKIIDQIKTM 1alvA 109 :DDMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRA 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTTG T0287 78 :SIGVDKFKKVYRLLE 1alvA 156 :KLGFEEFKYLWNNIK T0287 105 :NPNFLFSKFDRSILG 1alvA 171 :KWQAIYKQFDVDRSG T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1alvA 186 :TIGSSELPGAFEAAGFHLNEHLYSMIIRR T0287 165 :YANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 215 :YSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGT Number of specific fragments extracted= 7 number of extra gaps= 1 total=1040 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1216980495.pdb -s /var/tmp/to_scwrl_1216980495.seq -o /var/tmp/from_scwrl_1216980495.pdb > /var/tmp/scwrl_1216980495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1216980495.pdb Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-muscle.a2m.gz # 1alvA read from T0287-1alvA-t2k-muscle.a2m.gz # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIAD 1alvA 95 :EVRQFRRLFAQLAG T0287 28 :ENELLNTDEKKKIIDQIKTM 1alvA 109 :DDMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRA 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTTG T0287 78 :SIGVDKFKKVYRLLE 1alvA 156 :KLGFEEFKYLWNNIK T0287 105 :NPNFLFSKFDRSILG 1alvA 171 :KWQAIYKQFDVDRSG T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1alvA 186 :TIGSSELPGAFEAAGFHLNEHLYSMIIRR T0287 165 :YANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 215 :YSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGT Number of specific fragments extracted= 7 number of extra gaps= 1 total=1047 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1194329711.pdb -s /var/tmp/to_scwrl_1194329711.seq -o /var/tmp/from_scwrl_1194329711.pdb > /var/tmp/scwrl_1194329711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1194329711.pdb Number of alignments=106 # command:# Prefix for input files set to 1b0b/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t04-global-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t04-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)D186 because last residue in template chain is (1b0b)M142 T0287 1 :MSNNMRKLFSMIADSKDKK 1b0b 25 :GPEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 77 :KSIGVD 1b0b 97 :KARGIS T0287 85 :KKVYRLLESETMELLH 1b0b 103 :AGQLEAAFKVLAGFMK T0287 163 :NFYANLKTIEQYNDYVRDLLMKF 1b0b 119 :SYGGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=1053 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1063156639.pdb -s /var/tmp/to_scwrl_1063156639.seq -o /var/tmp/from_scwrl_1063156639.pdb > /var/tmp/scwrl_1063156639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1063156639.pdb Number of alignments=107 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t04-global-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t04-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 3 :NNMRKLFSMIADSKDKK 1b0b 27 :EFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 76 :IKSIGVDKFKKVYRLLE 1b0b 98 :ARGISAGQLEAAFKVLA T0287 94 :ETME 1b0b 115 :GFMK T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1b0b 119 :SYGGDEGAWTAVAGALMGMIRP T0287 189 :K 1b0b 141 :D Number of specific fragments extracted= 7 number of extra gaps= 2 total=1060 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1824182574.pdb -s /var/tmp/to_scwrl_1824182574.seq -o /var/tmp/from_scwrl_1824182574.pdb > /var/tmp/scwrl_1824182574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1824182574.pdb Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t04-local-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t04-local-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLL 1b0b 97 :KARGISAGQLEAAFKVL Number of specific fragments extracted= 4 number of extra gaps= 2 total=1064 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_9130951.pdb -s /var/tmp/to_scwrl_9130951.seq -o /var/tmp/from_scwrl_9130951.pdb > /var/tmp/scwrl_9130951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_9130951.pdb Number of alignments=109 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t04-local-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t04-local-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 76 :IKSIGVDKFKKVYRLLE 1b0b 98 :ARGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 2 total=1068 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_952814816.pdb -s /var/tmp/to_scwrl_952814816.seq -o /var/tmp/from_scwrl_952814816.pdb > /var/tmp/scwrl_952814816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_952814816.pdb Number of alignments=110 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t06-global-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t06-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 2 :SNNMRKLFSMIADSKDKK 1b0b 26 :PEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRL 1b0b 97 :KARGISAGQLEAAFKV T0287 98 :LLHAIAE 1b0b 113 :LAGFMKS T0287 164 :FYANLKTIEQYNDYVRDLLMK 1b0b 120 :YGGDEGAWTAVAGALMGMIRP T0287 189 :K 1b0b 141 :D Number of specific fragments extracted= 7 number of extra gaps= 2 total=1075 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_405246836.pdb -s /var/tmp/to_scwrl_405246836.seq -o /var/tmp/from_scwrl_405246836.pdb > /var/tmp/scwrl_405246836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_405246836.pdb Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t06-global-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t06-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 2 :SNNMRKLFSMIADSKDKK 1b0b 26 :PEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLL 1b0b 99 :RGISAGQLEAAFKVL T0287 96 :MELLHA 1b0b 114 :AGFMKS T0287 164 :FYANLKTIEQYNDYVRDLLMK 1b0b 120 :YGGDEGAWTAVAGALMGMIRP T0287 189 :K 1b0b 141 :D Number of specific fragments extracted= 7 number of extra gaps= 2 total=1082 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1973186919.pdb -s /var/tmp/to_scwrl_1973186919.seq -o /var/tmp/from_scwrl_1973186919.pdb > /var/tmp/scwrl_1973186919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1973186919.pdb Number of alignments=112 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t06-local-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t06-local-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLL 1b0b 97 :KARGISAGQLEAAFKVL Number of specific fragments extracted= 4 number of extra gaps= 2 total=1086 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1798533417.pdb -s /var/tmp/to_scwrl_1798533417.seq -o /var/tmp/from_scwrl_1798533417.pdb > /var/tmp/scwrl_1798533417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1798533417.pdb Number of alignments=113 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t06-local-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t06-local-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 6 :RKLFSMIADSKDKK 1b0b 30 :MALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 2 total=1090 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_851562910.pdb -s /var/tmp/to_scwrl_851562910.seq -o /var/tmp/from_scwrl_851562910.pdb > /var/tmp/scwrl_851562910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_851562910.pdb Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t2k-global-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t2k-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)I129 because last residue in template chain is (1b0b)M142 T0287 1 :MSNNMRKLFSMIADSKDKK 1b0b 25 :GPEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLLESETMELLH 1b0b 97 :KARGISAGQLEAAFKVLAGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSKP 1b0b 123 :DEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 5 number of extra gaps= 2 total=1095 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1249377140.pdb -s /var/tmp/to_scwrl_1249377140.seq -o /var/tmp/from_scwrl_1249377140.pdb > /var/tmp/scwrl_1249377140.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1249377140.pdb Number of alignments=115 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t2k-global-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t2k-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)I129 because last residue in template chain is (1b0b)M142 T0287 1 :MSNNMRKLFSMIADSKDKK 1b0b 25 :GPEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLLESETMELLH 1b0b 97 :KARGISAGQLEAAFKVLAGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSKP 1b0b 123 :DEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 5 number of extra gaps= 2 total=1100 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_369509775.pdb -s /var/tmp/to_scwrl_369509775.seq -o /var/tmp/from_scwrl_369509775.pdb > /var/tmp/scwrl_369509775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_369509775.pdb Number of alignments=116 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t2k-local-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t2k-local-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLL 1b0b 97 :KARGISAGQLEAAFKVL Number of specific fragments extracted= 4 number of extra gaps= 2 total=1104 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1484215394.pdb -s /var/tmp/to_scwrl_1484215394.seq -o /var/tmp/from_scwrl_1484215394.pdb > /var/tmp/scwrl_1484215394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1484215394.pdb Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t2k-local-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t2k-local-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLLE 1b0b 97 :KARGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 2 total=1108 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1557440234.pdb -s /var/tmp/to_scwrl_1557440234.seq -o /var/tmp/from_scwrl_1557440234.pdb > /var/tmp/scwrl_1557440234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1557440234.pdb Number of alignments=118 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fal-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2fal-T0287-fssp-global-adpstyle5.a2m # 1b0b read from 2fal-T0287-fssp-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)M133 because last residue in template chain is (1b0b)M142 T0287 2 :SNNMRKLF 1b0b 3 :SAAQKDNV T0287 10 :SMIADSK 1b0b 34 :DAHDDVF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKII 1b0b 56 :KNTPEMAAQA T0287 42 :DQIKTMHDFFKQ 1b0b 67 :SFKGLVSNWVDN T0287 55 :HTNKGALDKVLRNYMKDYRAV 1b0b 79 :LDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMEL 1b0b 100 :GISAGQLEAAFKVLAGFMKSY T0287 112 :KFDRSILGIFLPFFSKPIMFK 1b0b 121 :GGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 8 number of extra gaps= 2 total=1116 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1448275561.pdb -s /var/tmp/to_scwrl_1448275561.seq -o /var/tmp/from_scwrl_1448275561.pdb > /var/tmp/scwrl_1448275561.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1448275561.pdb Number of alignments=119 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fal-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2fal-T0287-fssp-local-adpstyle5.a2m # 1b0b read from 2fal-T0287-fssp-local-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 25 :SLQEN 1b0b 49 :GAAKG T0287 32 :LNTDEKKKII 1b0b 56 :KNTPEMAAQA T0287 42 :DQIKTMHDFFKQ 1b0b 67 :SFKGLVSNWVDN T0287 55 :HTNKGALDKVLRNYMKDYRAV 1b0b 79 :LDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMEL 1b0b 100 :GISAGQLEAAFKVLAGFMKSY Number of specific fragments extracted= 5 number of extra gaps= 1 total=1121 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_519503333.pdb -s /var/tmp/to_scwrl_519503333.seq -o /var/tmp/from_scwrl_519503333.pdb > /var/tmp/scwrl_519503333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_519503333.pdb Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-simplesw-adpstyle1.a2m # 1b0b read from T0287-1b0b-simplesw-adpstyle1.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1b0b 111 :KVLAGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1123 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1969418176.pdb -s /var/tmp/to_scwrl_1969418176.seq -o /var/tmp/from_scwrl_1969418176.pdb > /var/tmp/scwrl_1969418176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1969418176.pdb Number of alignments=121 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-simplesw-adpstyle5.a2m # 1b0b read from T0287-1b0b-simplesw-adpstyle5.a2m # found chain 1b0b in training set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 69 :KGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1b0b 111 :KVLAGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1125 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_373149468.pdb -s /var/tmp/to_scwrl_373149468.seq -o /var/tmp/from_scwrl_373149468.pdb > /var/tmp/scwrl_373149468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_373149468.pdb Number of alignments=122 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-global-adpstyle1.a2m # 1b0b read from T0287-1b0b-t04-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLL 1b0b 99 :RGISAGQLEAAFKVL T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFDLEK 1b0b 114 :AGFMKSYGGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=1131 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1580295311.pdb -s /var/tmp/to_scwrl_1580295311.seq -o /var/tmp/from_scwrl_1580295311.pdb > /var/tmp/scwrl_1580295311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1580295311.pdb Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-global-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARG T0287 79 :IGVDKFKKVYRLLES 1b0b 101 :ISAGQLEAAFKVLAG T0287 141 :QIELYGT 1b0b 116 :FMKSYGG T0287 171 :IEQYNDYVRDLLMKFD 1b0b 123 :DEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 8 number of extra gaps= 2 total=1139 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1540511840.pdb -s /var/tmp/to_scwrl_1540511840.seq -o /var/tmp/from_scwrl_1540511840.pdb > /var/tmp/scwrl_1540511840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1540511840.pdb Number of alignments=124 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKKEK 1b0b 28 :FFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1b0b 115 :GFMKSYGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 7 number of extra gaps= 1 total=1146 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1398532803.pdb -s /var/tmp/to_scwrl_1398532803.seq -o /var/tmp/from_scwrl_1398532803.pdb > /var/tmp/scwrl_1398532803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1398532803.pdb Number of alignments=125 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRKLFSMI 1b0b 8 :DNVKSSWAKA T0287 13 :A 1b0b 19 :A T0287 16 :KDKKEKLIESLQE 1b0b 22 :GTAGPEFFMALFD T0287 29 :N 1b0b 53 :G T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 110 :FSK 1b0b 117 :MKS T0287 164 :FYANLKTIEQYNDYVRDLLM 1b0b 120 :YGGDEGAWTAVAGALMGMIR T0287 197 :QNA 1b0b 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 2 total=1155 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1108221486.pdb -s /var/tmp/to_scwrl_1108221486.seq -o /var/tmp/from_scwrl_1108221486.pdb > /var/tmp/scwrl_1108221486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108221486.pdb Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-local-adpstyle1.a2m # 1b0b read from T0287-1b0b-t04-local-adpstyle1.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1b0b 111 :KVLAGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1157 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1218696102.pdb -s /var/tmp/to_scwrl_1218696102.seq -o /var/tmp/from_scwrl_1218696102.pdb > /var/tmp/scwrl_1218696102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218696102.pdb Number of alignments=127 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-local-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-local-adpstyle5.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDY 1b0b 111 :KVLAGFMKSY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1159 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1282517467.pdb -s /var/tmp/to_scwrl_1282517467.seq -o /var/tmp/from_scwrl_1282517467.pdb > /var/tmp/scwrl_1282517467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282517467.pdb Number of alignments=128 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 6 :RKLFSMIADSKDKKEK 1b0b 26 :PEFFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 1 total=1163 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1381716257.pdb -s /var/tmp/to_scwrl_1381716257.seq -o /var/tmp/from_scwrl_1381716257.pdb > /var/tmp/scwrl_1381716257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1381716257.pdb Number of alignments=129 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADS 1b0b 25 :GPEFFMALFDA T0287 19 :KEKLIESL 1b0b 36 :HDDVFAKF T0287 28 :EN 1b0b 52 :KG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 95 :TMELLHAIAE 1b0b 123 :DEGAWTAVAG Number of specific fragments extracted= 6 number of extra gaps= 2 total=1169 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_658721404.pdb -s /var/tmp/to_scwrl_658721404.seq -o /var/tmp/from_scwrl_658721404.pdb > /var/tmp/scwrl_658721404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_658721404.pdb Number of alignments=130 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-global-adpstyle1.a2m # 1b0b read from T0287-1b0b-t06-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLL 1b0b 99 :RGISAGQLEAAFKVL T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFDLEK 1b0b 114 :AGFMKSYGGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=1175 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_556447688.pdb -s /var/tmp/to_scwrl_556447688.seq -o /var/tmp/from_scwrl_556447688.pdb > /var/tmp/scwrl_556447688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_556447688.pdb Number of alignments=131 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-global-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARG T0287 79 :IGVDKFKKVYRLLES 1b0b 101 :ISAGQLEAAFKVLAG T0287 141 :QIELYGT 1b0b 116 :FMKSYGG T0287 171 :IEQYNDYVRDLLMKFD 1b0b 123 :DEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 8 number of extra gaps= 2 total=1183 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1583658097.pdb -s /var/tmp/to_scwrl_1583658097.seq -o /var/tmp/from_scwrl_1583658097.pdb > /var/tmp/scwrl_1583658097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1583658097.pdb Number of alignments=132 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKKEK 1b0b 28 :FFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1b0b 115 :GFMKSYGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 7 number of extra gaps= 1 total=1190 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_665237966.pdb -s /var/tmp/to_scwrl_665237966.seq -o /var/tmp/from_scwrl_665237966.pdb > /var/tmp/scwrl_665237966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_665237966.pdb Number of alignments=133 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRKLFSMI 1b0b 8 :DNVKSSWAKA T0287 13 :A 1b0b 19 :A T0287 16 :KDKKEKLIESLQE 1b0b 22 :GTAGPEFFMALFD T0287 29 :N 1b0b 53 :G T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 110 :FSK 1b0b 117 :MKS T0287 164 :FYANLKTIEQYNDYVRDLLM 1b0b 120 :YGGDEGAWTAVAGALMGMIR T0287 197 :QNA 1b0b 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 2 total=1199 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_258722943.pdb -s /var/tmp/to_scwrl_258722943.seq -o /var/tmp/from_scwrl_258722943.pdb > /var/tmp/scwrl_258722943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_258722943.pdb Number of alignments=134 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-local-adpstyle1.a2m # 1b0b read from T0287-1b0b-t06-local-adpstyle1.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1b0b 111 :KVLAGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1201 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1567103362.pdb -s /var/tmp/to_scwrl_1567103362.seq -o /var/tmp/from_scwrl_1567103362.pdb > /var/tmp/scwrl_1567103362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1567103362.pdb Number of alignments=135 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-local-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-local-adpstyle5.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDY 1b0b 111 :KVLAGFMKSY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1203 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1882218461.pdb -s /var/tmp/to_scwrl_1882218461.seq -o /var/tmp/from_scwrl_1882218461.pdb > /var/tmp/scwrl_1882218461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882218461.pdb Number of alignments=136 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 6 :RKLFSMIADSKDKKEK 1b0b 26 :PEFFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 1 total=1207 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1453052654.pdb -s /var/tmp/to_scwrl_1453052654.seq -o /var/tmp/from_scwrl_1453052654.pdb > /var/tmp/scwrl_1453052654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1453052654.pdb Number of alignments=137 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADS 1b0b 25 :GPEFFMALFDA T0287 19 :KEKLIESL 1b0b 36 :HDDVFAKF T0287 28 :EN 1b0b 52 :KG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 95 :TMELLHAIAE 1b0b 123 :DEGAWTAVAG Number of specific fragments extracted= 6 number of extra gaps= 2 total=1213 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_482776354.pdb -s /var/tmp/to_scwrl_482776354.seq -o /var/tmp/from_scwrl_482776354.pdb > /var/tmp/scwrl_482776354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_482776354.pdb Number of alignments=138 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-global-adpstyle1.a2m # 1b0b read from T0287-1b0b-t2k-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLL 1b0b 99 :RGISAGQLEAAFKVL T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFDLEK 1b0b 114 :AGFMKSYGGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=1219 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1558917388.pdb -s /var/tmp/to_scwrl_1558917388.seq -o /var/tmp/from_scwrl_1558917388.pdb > /var/tmp/scwrl_1558917388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1558917388.pdb Number of alignments=139 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-global-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARG T0287 79 :IGVDKFKKVYRLLES 1b0b 101 :ISAGQLEAAFKVLAG T0287 141 :QIELYGT 1b0b 116 :FMKSYGG T0287 171 :IEQYNDYVRDLLMKFD 1b0b 123 :DEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 8 number of extra gaps= 2 total=1227 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1462183605.pdb -s /var/tmp/to_scwrl_1462183605.seq -o /var/tmp/from_scwrl_1462183605.pdb > /var/tmp/scwrl_1462183605.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1462183605.pdb Number of alignments=140 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKKEK 1b0b 28 :FFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1b0b 115 :GFMKSYGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 7 number of extra gaps= 1 total=1234 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1435591170.pdb -s /var/tmp/to_scwrl_1435591170.seq -o /var/tmp/from_scwrl_1435591170.pdb > /var/tmp/scwrl_1435591170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1435591170.pdb Number of alignments=141 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRKLFSMI 1b0b 8 :DNVKSSWAKA T0287 13 :A 1b0b 19 :A T0287 16 :KDKKEKLIESLQE 1b0b 22 :GTAGPEFFMALFD T0287 29 :N 1b0b 53 :G T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 110 :FSK 1b0b 117 :MKS T0287 164 :FYANLKTIEQYNDYVRDLLM 1b0b 120 :YGGDEGAWTAVAGALMGMIR T0287 197 :QNA 1b0b 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 2 total=1243 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1964164224.pdb -s /var/tmp/to_scwrl_1964164224.seq -o /var/tmp/from_scwrl_1964164224.pdb > /var/tmp/scwrl_1964164224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964164224.pdb Number of alignments=142 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-local-adpstyle1.a2m # 1b0b read from T0287-1b0b-t2k-local-adpstyle1.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1b0b 111 :KVLAGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1245 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1287886878.pdb -s /var/tmp/to_scwrl_1287886878.seq -o /var/tmp/from_scwrl_1287886878.pdb > /var/tmp/scwrl_1287886878.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1287886878.pdb Number of alignments=143 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-local-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-local-adpstyle5.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDY 1b0b 111 :KVLAGFMKSY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1247 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1086640940.pdb -s /var/tmp/to_scwrl_1086640940.seq -o /var/tmp/from_scwrl_1086640940.pdb > /var/tmp/scwrl_1086640940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1086640940.pdb Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 24 :ESLQEN 1b0b 48 :SGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1b0b 99 :RGISAGQLEAAFKVLAG Number of specific fragments extracted= 3 number of extra gaps= 1 total=1250 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_668243488.pdb -s /var/tmp/to_scwrl_668243488.seq -o /var/tmp/from_scwrl_668243488.pdb > /var/tmp/scwrl_668243488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668243488.pdb Number of alignments=145 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADS 1b0b 25 :GPEFFMALFDA T0287 19 :KEKLIESL 1b0b 36 :HDDVFAKF T0287 28 :EN 1b0b 52 :KG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 95 :TMELLHAIAE 1b0b 123 :DEGAWTAVAG Number of specific fragments extracted= 6 number of extra gaps= 2 total=1256 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_389780372.pdb -s /var/tmp/to_scwrl_389780372.seq -o /var/tmp/from_scwrl_389780372.pdb > /var/tmp/scwrl_389780372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389780372.pdb Number of alignments=146 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1b0b-t04-muscle.a2m.gz # 1b0b read from T0287-1b0b-t04-muscle.a2m.gz # found chain 1b0b in training set Warning: unaligning (T0287)L32 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 33 :NTDEKKKIIDQIKTMHD 1b0b 3 :SAAQKDNVKSSWAKASA T0287 52 :KQMHT 1b0b 22 :GTAGP T0287 63 :KVLRNYMKDYRAVIK 1b0b 27 :EFFMALFDAHDDVFA T0287 83 :KF 1b0b 42 :KF T0287 87 :VYRLLESE 1b0b 46 :LFSGAAKG T0287 97 :ELLHAIAENPNFLFSKFDRSILGI 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNL T0287 126 :SKPIMFKMSIREMDSQIELYGTNLPLLKLF 1b0b 80 :DNAGALEGQCKTFAANHKARGISAGQLEAA T0287 156 :VMTDEEVNFYANLKTIEQYNDYVRDLL 1b0b 112 :VLAGFMKSYGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 9 number of extra gaps= 3 total=1265 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1456150715.pdb -s /var/tmp/to_scwrl_1456150715.seq -o /var/tmp/from_scwrl_1456150715.pdb > /var/tmp/scwrl_1456150715.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1456150715.pdb Number of alignments=147 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1b0b-t06-muscle.a2m.gz # 1b0b read from T0287-1b0b-t06-muscle.a2m.gz # found chain 1b0b in training set Warning: unaligning (T0287)L32 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 33 :NTDEKKKIIDQIKTMHD 1b0b 3 :SAAQKDNVKSSWAKASA T0287 52 :KQMHT 1b0b 22 :GTAGP T0287 63 :KVLRNYMKDYRAVIK 1b0b 27 :EFFMALFDAHDDVFA T0287 83 :KF 1b0b 42 :KF T0287 87 :VYRLLESE 1b0b 46 :LFSGAAKG T0287 97 :ELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKVLAGFMKS T0287 164 :FYANLKTIEQYNDYVRDLL 1b0b 120 :YGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 8 number of extra gaps= 3 total=1273 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_4975235.pdb -s /var/tmp/to_scwrl_4975235.seq -o /var/tmp/from_scwrl_4975235.pdb > /var/tmp/scwrl_4975235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_4975235.pdb Number of alignments=148 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-muscle.a2m.gz # 1b0b read from T0287-1b0b-t2k-muscle.a2m.gz # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)K194 because last residue in template chain is (1b0b)M142 T0287 3 :NN 1b0b 3 :SA T0287 42 :DQIKTMHDFFKQMHT 1b0b 5 :AQKDNVKSSWAKASA T0287 59 :GALD 1b0b 22 :GTAG T0287 63 :KVLRNYMKDYRAV 1b0b 27 :EFFMALFDAHDDV T0287 81 :VDKF 1b0b 40 :FAKF T0287 87 :VYRLLESE 1b0b 46 :LFSGAAKG T0287 97 :ELLHAIAENPNFLFSKFDR 1b0b 56 :KNTPEMAAQAQSFKGLVSN T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1b0b 75 :WVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKV T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1b0b 113 :LAGFMKSYGGDEGAWTAVAGAL T0287 187 :LEKYMKE 1b0b 135 :MGMIRPD Number of specific fragments extracted= 10 number of extra gaps= 3 total=1283 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1947220606.pdb -s /var/tmp/to_scwrl_1947220606.seq -o /var/tmp/from_scwrl_1947220606.pdb > /var/tmp/scwrl_1947220606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1947220606.pdb Number of alignments=149 # command:# Prefix for input files set to 1c02A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t04-global-adpstyle1.a2m # 1c02A read from 1c02A-T0287-t04-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)R66 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALG T0287 68 :YMKDYRAVIKSIG 1c02A 77 :RIAWVCERIQNLG T0287 81 :VDKFKKVYRLLESE 1c02A 96 :FPNKTELVNTLSDK T0287 97 :ELLHAIAENPN 1c02A 110 :SIINGINIDED T0287 110 :FSKFD 1c02A 123 :EIKIQ T0287 156 :VMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1c02A 128 :VDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNT T0287 198 :NA 1c02A 166 :NL Number of specific fragments extracted= 8 number of extra gaps= 3 total=1291 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_756942630.pdb -s /var/tmp/to_scwrl_756942630.seq -o /var/tmp/from_scwrl_756942630.pdb > /var/tmp/scwrl_756942630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_756942630.pdb Number of alignments=150 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t04-global-adpstyle5.a2m # 1c02A read from 1c02A-T0287-t04-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 18 :KKEKLIESLQENELLNTDEK 1c02A 4 :IPSEIINWTILNEIISMDDD T0287 44 :IKTMHDFFKQMHTNKGALDKVLRNYM 1c02A 29 :KGLIIQFIDQAQTTFAQMQRQLDGEK T0287 71 :DYRAVI 1c02A 55 :NLTELD T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESET 1c02A 77 :RIAWVCERIQNLG T0287 104 :ENPNFLFSKFDRSILGIFLP 1c02A 90 :RKMQHFFPNKTELVNTLSDK T0287 126 :SKPIMFKMSIR 1c02A 110 :SIINGINIDED T0287 139 :DSQIE 1c02A 123 :EIKIQ T0287 157 :MTDEEVNFYANLKTIEQYNDYVR 1c02A 131 :KDENSIYLILIAKALNQSRLEFK T0287 182 :LMKFDLEKYMK 1c02A 154 :LARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 11 number of extra gaps= 3 total=1302 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_524478569.pdb -s /var/tmp/to_scwrl_524478569.seq -o /var/tmp/from_scwrl_524478569.pdb > /var/tmp/scwrl_524478569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_524478569.pdb Number of alignments=151 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t04-local-adpstyle1.a2m # 1c02A read from 1c02A-T0287-t04-local-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 T0287 151 :LLKLFVMTDE 1c02A 14 :LNEIISMDDD T0287 163 :NFYANL 1c02A 26 :DFSKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=1304 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t04-local-adpstyle5.a2m # 1c02A read from 1c02A-T0287-t04-local-adpstyle5.a2m # found chain 1c02A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1304 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t2k-global-adpstyle1.a2m # 1c02A read from 1c02A-T0287-t2k-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S25 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 27 :QENELLNTDEKKKIIDQI 1c02A 4 :IPSEIINWTILNEIISMD T0287 45 :KTMHDFFKQMHTNKGALDKVLR 1c02A 30 :GLIIQFIDQAQTTFAQMQRQLD T0287 68 :YMKDYRAVIK 1c02A 52 :GEKNLTELDN T0287 78 :SIG 1c02A 72 :ALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSI T0287 138 :MDSQIELYG 1c02A 112 :INGINIDED T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1c02A 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFKLA T0287 184 :KFDLEKYMKE 1c02A 156 :RIELSKYYNT T0287 198 :NA 1c02A 166 :NL Number of specific fragments extracted= 9 number of extra gaps= 2 total=1313 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1769155135.pdb -s /var/tmp/to_scwrl_1769155135.seq -o /var/tmp/from_scwrl_1769155135.pdb > /var/tmp/scwrl_1769155135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1769155135.pdb Number of alignments=152 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t2k-global-adpstyle5.a2m # 1c02A read from 1c02A-T0287-t2k-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 1 :MSNNMRKLFSMIAD 1c02A 9 :INWTILNEIISMDD T0287 17 :DKKEKLIESL 1c02A 26 :DFSKGLIIQF T0287 34 :TDEKKKIIDQIKTMHD 1c02A 36 :IDQAQTTFAQMQRQLD T0287 57 :NKGALDKVLR 1c02A 52 :GEKNLTELDN T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSI T0287 146 :G 1c02A 120 :D T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1c02A 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFKLA T0287 184 :KFDLEKYMKE 1c02A 156 :RIELSKYYNT T0287 198 :NA 1c02A 166 :NL Number of specific fragments extracted= 10 number of extra gaps= 2 total=1323 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1130092098.pdb -s /var/tmp/to_scwrl_1130092098.seq -o /var/tmp/from_scwrl_1130092098.pdb > /var/tmp/scwrl_1130092098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1130092098.pdb Number of alignments=153 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t2k-local-adpstyle1.a2m # 1c02A read from 1c02A-T0287-t2k-local-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S25 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 T0287 27 :QENELLNTDEKKKIIDQIKT 1c02A 4 :IPSEIINWTILNEIISMDDD T0287 49 :DFFKQM 1c02A 26 :DFSKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=1325 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2104773880.pdb -s /var/tmp/to_scwrl_2104773880.seq -o /var/tmp/from_scwrl_2104773880.pdb > /var/tmp/scwrl_2104773880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2104773880.pdb Number of alignments=154 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t2k-local-adpstyle5.a2m # 1c02A read from 1c02A-T0287-t2k-local-adpstyle5.a2m # found chain 1c02A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1325 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-fssp-global-adpstyle5.a2m # 1c02A read from 1qspA-T0287-fssp-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 T0287 19 :KEKLIESLQENELLNTDEK 1c02A 5 :PSEIINWTILNEIISMDDD T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKN T0287 71 :DYRAVIKSIG 1c02A 65 :FLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPF 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIINGINID T0287 125 :F 1c02A 120 :D T0287 127 :KPIMFKMSIREMDSQIELYGTNLP 1c02A 137 :YLILIAKALNQSRLEFKLARIELS Number of specific fragments extracted= 6 number of extra gaps= 3 total=1331 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1162183328.pdb -s /var/tmp/to_scwrl_1162183328.seq -o /var/tmp/from_scwrl_1162183328.pdb > /var/tmp/scwrl_1162183328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1162183328.pdb Number of alignments=155 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-fssp-local-adpstyle5.a2m # 1c02A read from 1qspA-T0287-fssp-local-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 T0287 26 :LQENELLNTDEK 1c02A 12 :TILNEIISMDDD T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKN T0287 71 :DYRAVIKSIG 1c02A 65 :FLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIINGINIDE T0287 126 :SKPIMFKMSIREMDSQIELY 1c02A 136 :IYLILIAKALNQSRLEFKLA Number of specific fragments extracted= 5 number of extra gaps= 2 total=1336 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_381141255.pdb -s /var/tmp/to_scwrl_381141255.seq -o /var/tmp/from_scwrl_381141255.pdb > /var/tmp/scwrl_381141255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_381141255.pdb Number of alignments=156 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-simplesw-adpstyle1.a2m # 1c02A read from T0287-1c02A-simplesw-adpstyle1.a2m # found chain 1c02A in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1c02A 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1337 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1065511721.pdb -s /var/tmp/to_scwrl_1065511721.seq -o /var/tmp/from_scwrl_1065511721.pdb > /var/tmp/scwrl_1065511721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1065511721.pdb Number of alignments=157 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-simplesw-adpstyle5.a2m # 1c02A read from T0287-1c02A-simplesw-adpstyle5.a2m # found chain 1c02A in template set T0287 28 :ENELLNTDEKKKIIDQI 1c02A 99 :KTELVNTLSDKSIINGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=1338 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-global-adpstyle1.a2m # 1c02A read from T0287-1c02A-t04-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QI 1c02A 123 :EI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 3 total=1346 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_233395785.pdb -s /var/tmp/to_scwrl_233395785.seq -o /var/tmp/from_scwrl_233395785.pdb > /var/tmp/scwrl_233395785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_233395785.pdb Number of alignments=158 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-global-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NN 1c02A 4 :IP T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 42 :DQIKTMHDFFKQMHTNKGALDKV 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNL T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREM 1c02A 113 :NGINIDED T0287 141 :QIEL 1c02A 123 :EIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1356 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1663658722.pdb -s /var/tmp/to_scwrl_1663658722.seq -o /var/tmp/from_scwrl_1663658722.pdb > /var/tmp/scwrl_1663658722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663658722.pdb Number of alignments=159 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIG 1c02A 58 :ELDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1366 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_299744331.pdb -s /var/tmp/to_scwrl_299744331.seq -o /var/tmp/from_scwrl_299744331.pdb > /var/tmp/scwrl_299744331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_299744331.pdb Number of alignments=160 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYAN 1c02A 132 :DENSIYLIL T0287 171 :IEQYNDYVR 1c02A 141 :IAKALNQSR T0287 180 :DLLMKFDLEKYMK 1c02A 152 :FKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 13 number of extra gaps= 3 total=1379 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_892117189.pdb -s /var/tmp/to_scwrl_892117189.seq -o /var/tmp/from_scwrl_892117189.pdb > /var/tmp/scwrl_892117189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_892117189.pdb Number of alignments=161 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-local-adpstyle1.a2m # 1c02A read from T0287-1c02A-t04-local-adpstyle1.a2m # found chain 1c02A in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1c02A 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1380 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_72622763.pdb -s /var/tmp/to_scwrl_72622763.seq -o /var/tmp/from_scwrl_72622763.pdb > /var/tmp/scwrl_72622763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_72622763.pdb Number of alignments=162 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-local-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-local-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 T0287 80 :G 1c02A 74 :G T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=1382 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIG 1c02A 58 :ELDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYA 1c02A 131 :KDENSIYL Number of specific fragments extracted= 9 number of extra gaps= 3 total=1391 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1883402429.pdb -s /var/tmp/to_scwrl_1883402429.seq -o /var/tmp/from_scwrl_1883402429.pdb > /var/tmp/scwrl_1883402429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1883402429.pdb Number of alignments=163 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 4 :NMRKLFSMIAD 1c02A 13 :ILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYANL 1c02A 132 :DENSIYLILI T0287 169 :KTIEQYN 1c02A 143 :KALNQSR T0287 178 :VRDLLMKFDLEKYM 1c02A 150 :LEFKLARIELSKYY Number of specific fragments extracted= 12 number of extra gaps= 3 total=1403 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1557355154.pdb -s /var/tmp/to_scwrl_1557355154.seq -o /var/tmp/from_scwrl_1557355154.pdb > /var/tmp/scwrl_1557355154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1557355154.pdb Number of alignments=164 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-global-adpstyle1.a2m # 1c02A read from T0287-1c02A-t06-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QI 1c02A 123 :EI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 3 total=1411 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_331345706.pdb -s /var/tmp/to_scwrl_331345706.seq -o /var/tmp/from_scwrl_331345706.pdb > /var/tmp/scwrl_331345706.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_331345706.pdb Number of alignments=165 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-global-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NN 1c02A 4 :IP T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 42 :DQIKTMHDFFKQMHTNKGALDKV 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNL T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREM 1c02A 113 :NGINIDED T0287 141 :QIEL 1c02A 123 :EIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1421 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1303022144.pdb -s /var/tmp/to_scwrl_1303022144.seq -o /var/tmp/from_scwrl_1303022144.pdb > /var/tmp/scwrl_1303022144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1303022144.pdb Number of alignments=166 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIG 1c02A 58 :ELDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1431 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1292089969.pdb -s /var/tmp/to_scwrl_1292089969.seq -o /var/tmp/from_scwrl_1292089969.pdb > /var/tmp/scwrl_1292089969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1292089969.pdb Number of alignments=167 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYAN 1c02A 132 :DENSIYLIL T0287 171 :IEQYNDYVR 1c02A 141 :IAKALNQSR T0287 180 :DLLMKFDLEKYMK 1c02A 152 :FKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 13 number of extra gaps= 3 total=1444 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1784398361.pdb -s /var/tmp/to_scwrl_1784398361.seq -o /var/tmp/from_scwrl_1784398361.pdb > /var/tmp/scwrl_1784398361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1784398361.pdb Number of alignments=168 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-local-adpstyle1.a2m # 1c02A read from T0287-1c02A-t06-local-adpstyle1.a2m # found chain 1c02A in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1c02A 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1445 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1785798498.pdb -s /var/tmp/to_scwrl_1785798498.seq -o /var/tmp/from_scwrl_1785798498.pdb > /var/tmp/scwrl_1785798498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785798498.pdb Number of alignments=169 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-local-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-local-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 T0287 80 :G 1c02A 74 :G T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=1447 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIG 1c02A 58 :ELDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYA 1c02A 131 :KDENSIYL Number of specific fragments extracted= 9 number of extra gaps= 3 total=1456 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_703523711.pdb -s /var/tmp/to_scwrl_703523711.seq -o /var/tmp/from_scwrl_703523711.pdb > /var/tmp/scwrl_703523711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_703523711.pdb Number of alignments=170 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 4 :NMRKLFSMIAD 1c02A 13 :ILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYANL 1c02A 132 :DENSIYLILI T0287 169 :KTIEQYN 1c02A 143 :KALNQSR T0287 178 :VRDLLMKFDLEKYM 1c02A 150 :LEFKLARIELSKYY Number of specific fragments extracted= 12 number of extra gaps= 3 total=1468 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1099098319.pdb -s /var/tmp/to_scwrl_1099098319.seq -o /var/tmp/from_scwrl_1099098319.pdb > /var/tmp/scwrl_1099098319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1099098319.pdb Number of alignments=171 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-global-adpstyle1.a2m # 1c02A read from T0287-1c02A-t2k-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QI 1c02A 123 :EI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 3 total=1476 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1073906021.pdb -s /var/tmp/to_scwrl_1073906021.seq -o /var/tmp/from_scwrl_1073906021.pdb > /var/tmp/scwrl_1073906021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1073906021.pdb Number of alignments=172 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-global-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NN 1c02A 4 :IP T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 42 :DQIKTMHDFFKQMHTNKGALDKV 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNL T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREM 1c02A 113 :NGINIDED T0287 141 :QIEL 1c02A 123 :EIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1486 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_520204289.pdb -s /var/tmp/to_scwrl_520204289.seq -o /var/tmp/from_scwrl_520204289.pdb > /var/tmp/scwrl_520204289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_520204289.pdb Number of alignments=173 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1496 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_239501551.pdb -s /var/tmp/to_scwrl_239501551.seq -o /var/tmp/from_scwrl_239501551.pdb > /var/tmp/scwrl_239501551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_239501551.pdb Number of alignments=174 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYAN 1c02A 132 :DENSIYLIL T0287 171 :IEQYNDYVR 1c02A 141 :IAKALNQSR T0287 180 :DLLMKFDLEKYMK 1c02A 152 :FKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 13 number of extra gaps= 3 total=1509 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_13063315.pdb -s /var/tmp/to_scwrl_13063315.seq -o /var/tmp/from_scwrl_13063315.pdb > /var/tmp/scwrl_13063315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_13063315.pdb Number of alignments=175 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-local-adpstyle1.a2m # 1c02A read from T0287-1c02A-t2k-local-adpstyle1.a2m # found chain 1c02A in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1c02A 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1510 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1188447776.pdb -s /var/tmp/to_scwrl_1188447776.seq -o /var/tmp/from_scwrl_1188447776.pdb > /var/tmp/scwrl_1188447776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1188447776.pdb Number of alignments=176 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-local-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-local-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 T0287 80 :G 1c02A 74 :G T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=1512 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN Number of specific fragments extracted= 9 number of extra gaps= 3 total=1521 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_629281924.pdb -s /var/tmp/to_scwrl_629281924.seq -o /var/tmp/from_scwrl_629281924.pdb > /var/tmp/scwrl_629281924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_629281924.pdb Number of alignments=177 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 4 :NMRKLFSMIAD 1c02A 13 :ILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYANL 1c02A 132 :DENSIYLILI T0287 169 :KTIEQYN 1c02A 143 :KALNQSR T0287 178 :VRDLLMKFDLEKYM 1c02A 150 :LEFKLARIELSKYY Number of specific fragments extracted= 12 number of extra gaps= 3 total=1533 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1469214030.pdb -s /var/tmp/to_scwrl_1469214030.seq -o /var/tmp/from_scwrl_1469214030.pdb > /var/tmp/scwrl_1469214030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1469214030.pdb Number of alignments=178 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1c02A-t04-muscle.a2m.gz # 1c02A read from T0287-1c02A-t04-muscle.a2m.gz # found chain 1c02A in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 9 :FSMIADSKDKKEKLIESLQE 1c02A 4 :IPSEIINWTILNEIISMDDD T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLES 1c02A 77 :RIAWVCERIQN T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVNFYA 1c02A 88 :LGRKMQHFFPNKTELVNTLSDKSIINGINIDED T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1c02A 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFK Number of specific fragments extracted= 6 number of extra gaps= 3 total=1539 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1193423011.pdb -s /var/tmp/to_scwrl_1193423011.seq -o /var/tmp/from_scwrl_1193423011.pdb > /var/tmp/scwrl_1193423011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193423011.pdb Number of alignments=179 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-muscle.a2m.gz # 1c02A read from T0287-1c02A-t2k-muscle.a2m.gz # found chain 1c02A in template set Warning: unaligning (T0287)M5 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)R6 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 Warning: unaligning (T0287)Q173 because last residue in template chain is (1c02A)L167 T0287 7 :KLFSMIADSKDKKEKLIESL 1c02A 4 :IPSEIINWTILNEIISMDDD T0287 29 :NELLNT 1c02A 26 :DFSKGL T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDK 1c02A 32 :IIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFS 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIINGINIDED T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1c02A 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTN Number of specific fragments extracted= 6 number of extra gaps= 3 total=1545 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_429018883.pdb -s /var/tmp/to_scwrl_429018883.seq -o /var/tmp/from_scwrl_429018883.pdb > /var/tmp/scwrl_429018883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_429018883.pdb Number of alignments=180 # command:# Prefix for input files set to 1dc1A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-fssp-global-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-fssp-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)R115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 27 :QENELLNTDEKKKIIDQIKT 1dc1A 81 :KAKKFLTEDDKKESINNLIE T0287 47 :M 1dc1A 102 :F T0287 48 :HDFFKQMHTNKGALDKVLRNYMKDY 1dc1A 113 :ELIFRYLLFQGDSLGGTMRNIAGAL T0287 73 :RAVIKSIG 1dc1A 196 :RTLMYNIT T0287 83 :K 1dc1A 206 :L T0287 102 :IAENPNFLFSKFD 1dc1A 207 :VKKNVDICLFNCE T0287 116 :S 1dc1A 231 :Q T0287 118 :LGIFLPFFSKPIMFKMSIRE 1dc1A 232 :PEKYLLLGELKGGIDPAGAD T0287 138 :MDSQIELYGTNLPLLK 1dc1A 253 :HWKTANTALTRIRNKF T0287 154 :LFVM 1dc1A 277 :TIFI T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLM 1dc1A 297 :QSGSLTNSANLTKTEQVGSLCRWIIN Number of specific fragments extracted= 11 number of extra gaps= 1 total=1556 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_78673014.pdb -s /var/tmp/to_scwrl_78673014.seq -o /var/tmp/from_scwrl_78673014.pdb > /var/tmp/scwrl_78673014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_78673014.pdb Number of alignments=181 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-fssp-local-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-fssp-local-adpstyle5.a2m # found chain 1dc1A in training set T0287 41 :IDQIKTMHDFFKQMHT 1dc1A 14 :VDDLKTTYEEYRAGFI T0287 58 :KGALDKVLRN 1dc1A 30 :AFALEKNKRS T0287 68 :YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 1dc1A 42 :YIERARALKVAASVAKTPKDLLYLEDIQDALLYAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1559 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1717901580.pdb -s /var/tmp/to_scwrl_1717901580.seq -o /var/tmp/from_scwrl_1717901580.pdb > /var/tmp/scwrl_1717901580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1717901580.pdb Number of alignments=182 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t04-global-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t04-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1dc1A)K5 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 68 :YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1dc1A 64 :YLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIEN T0287 106 :PNFLFSKFDRSILGI 1dc1A 135 :GALAQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANL 1dc1A 232 :PEKYLLL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1dc1A 266 :NKFSEKGLSPKTIFIGAAIEHSMAEEIWDQL Number of specific fragments extracted= 11 number of extra gaps= 2 total=1570 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_50690372.pdb -s /var/tmp/to_scwrl_50690372.seq -o /var/tmp/from_scwrl_50690372.pdb > /var/tmp/scwrl_50690372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_50690372.pdb Number of alignments=183 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t04-global-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t04-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 7 :FE T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQENELLNT 1dc1A 41 :PYIERARALKVAAS T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1dc1A 55 :VAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKK T0287 75 :VI 1dc1A 94 :SI T0287 77 :KSIGVDKF 1dc1A 107 :GEEFIDEL T0287 87 :VYRLLESETMELLHAIAENPNF 1dc1A 115 :IFRYLLFQGDSLGGTMRNIAGA T0287 109 :LFSKFDRSILGI 1dc1A 138 :AQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 145 :YGTN 1dc1A 200 :YNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANLKTIEQ 1dc1A 232 :PEKYLLLGELKG T0287 174 :YNDYV 1dc1A 257 :ANTAL T0287 179 :R 1dc1A 265 :R T0287 180 :DLLMKFDLEKYMKEKG 1dc1A 277 :TIFIGAAIEHSMAEEI T0287 196 :VQNA 1dc1A 320 :IINI Number of specific fragments extracted= 19 number of extra gaps= 2 total=1589 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1208765112.pdb -s /var/tmp/to_scwrl_1208765112.seq -o /var/tmp/from_scwrl_1208765112.pdb > /var/tmp/scwrl_1208765112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1208765112.pdb Number of alignments=184 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t04-local-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t04-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1dc1A 17 :LKTTYEEYRAGFIAFALEKNKRSTPYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1590 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1675191814.pdb -s /var/tmp/to_scwrl_1675191814.seq -o /var/tmp/from_scwrl_1675191814.pdb > /var/tmp/scwrl_1675191814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1675191814.pdb Number of alignments=185 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t04-local-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t04-local-adpstyle5.a2m # found chain 1dc1A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1590 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t06-global-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t06-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1dc1A)K5 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 68 :YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1dc1A 64 :YLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIEN T0287 106 :PNFLFSKFDRSILGI 1dc1A 135 :GALAQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANL 1dc1A 232 :PEKYLLL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1dc1A 266 :NKFSEKGLSPKTIFIGAAIEHSMAEEIWDQL Number of specific fragments extracted= 11 number of extra gaps= 2 total=1601 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1212873700.pdb -s /var/tmp/to_scwrl_1212873700.seq -o /var/tmp/from_scwrl_1212873700.pdb > /var/tmp/scwrl_1212873700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1212873700.pdb Number of alignments=186 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t06-global-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t06-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 7 :FE T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQENELLNT 1dc1A 41 :PYIERARALKVAAS T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1dc1A 55 :VAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKK T0287 75 :VI 1dc1A 94 :SI T0287 77 :KSIGVDKF 1dc1A 107 :GEEFIDEL T0287 87 :VYRLLESETMELLHAIAENPNF 1dc1A 115 :IFRYLLFQGDSLGGTMRNIAGA T0287 109 :LFSKFDRSILGI 1dc1A 138 :AQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 145 :YGTN 1dc1A 200 :YNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANLKTIEQ 1dc1A 232 :PEKYLLLGELKG T0287 174 :YNDYV 1dc1A 257 :ANTAL T0287 179 :R 1dc1A 265 :R T0287 180 :DLLMKFDLEKYMKEKG 1dc1A 277 :TIFIGAAIEHSMAEEI T0287 196 :VQNA 1dc1A 320 :IINI Number of specific fragments extracted= 19 number of extra gaps= 2 total=1620 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1589906367.pdb -s /var/tmp/to_scwrl_1589906367.seq -o /var/tmp/from_scwrl_1589906367.pdb > /var/tmp/scwrl_1589906367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1589906367.pdb Number of alignments=187 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t06-local-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t06-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1dc1A 17 :LKTTYEEYRAGFIAFALEKNKRSTPYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1621 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_593219888.pdb -s /var/tmp/to_scwrl_593219888.seq -o /var/tmp/from_scwrl_593219888.pdb > /var/tmp/scwrl_593219888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593219888.pdb Number of alignments=188 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t06-local-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t06-local-adpstyle5.a2m # found chain 1dc1A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1621 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t2k-global-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t2k-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1dc1A)K5 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 68 :YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1dc1A 64 :YLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIEN T0287 106 :PNFLFSKFDRSILGI 1dc1A 135 :GALAQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANL 1dc1A 232 :PEKYLLL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1dc1A 266 :NKFSEKGLSPKTIFIGAAIEHSMAEEIWDQL Number of specific fragments extracted= 11 number of extra gaps= 2 total=1632 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1446269485.pdb -s /var/tmp/to_scwrl_1446269485.seq -o /var/tmp/from_scwrl_1446269485.pdb > /var/tmp/scwrl_1446269485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1446269485.pdb Number of alignments=189 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t2k-global-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t2k-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 7 :FE T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQENELLNT 1dc1A 41 :PYIERARALKVAAS T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1dc1A 55 :VAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKK T0287 75 :VI 1dc1A 94 :SI T0287 77 :KSIGVDKF 1dc1A 107 :GEEFIDEL T0287 87 :VYRLLESETMELLHAIAENPNF 1dc1A 115 :IFRYLLFQGDSLGGTMRNIAGA T0287 109 :LFSKFDRSILGI 1dc1A 138 :AQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 145 :YGTN 1dc1A 200 :YNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANLKTIEQ 1dc1A 232 :PEKYLLLGELKG T0287 174 :YNDYV 1dc1A 257 :ANTAL T0287 179 :R 1dc1A 265 :R T0287 180 :DLLMKFDLEKYMKEKG 1dc1A 277 :TIFIGAAIEHSMAEEI T0287 196 :VQNA 1dc1A 320 :IINI Number of specific fragments extracted= 19 number of extra gaps= 2 total=1651 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1106081442.pdb -s /var/tmp/to_scwrl_1106081442.seq -o /var/tmp/from_scwrl_1106081442.pdb > /var/tmp/scwrl_1106081442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1106081442.pdb Number of alignments=190 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t2k-local-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t2k-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1dc1A 17 :LKTTYEEYRAGFIAFALEKNKRSTPYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1652 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_892964219.pdb -s /var/tmp/to_scwrl_892964219.seq -o /var/tmp/from_scwrl_892964219.pdb > /var/tmp/scwrl_892964219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_892964219.pdb Number of alignments=191 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t2k-local-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t2k-local-adpstyle5.a2m # found chain 1dc1A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1652 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-simplesw-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-simplesw-adpstyle1.a2m # found chain 1dc1A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1653 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_190903027.pdb -s /var/tmp/to_scwrl_190903027.seq -o /var/tmp/from_scwrl_190903027.pdb > /var/tmp/scwrl_190903027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190903027.pdb Number of alignments=192 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-simplesw-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-simplesw-adpstyle5.a2m # found chain 1dc1A in training set T0287 22 :LIESLQENEL 1dc1A 94 :SINNLIENFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1654 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-global-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t04-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIEL 1dc1A 70 :DALLYASGISDKAKKFLTEDDKKESINNLIENFLEPAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALDI T0287 147 :TNLPLLKLFV 1dc1A 153 :ANIPYKWLDS T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQ 1dc1A 165 :KKYTNWMDKPEDDYELETFAKGISWTINGKHRTLMYNIT Number of specific fragments extracted= 4 number of extra gaps= 2 total=1658 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1178704205.pdb -s /var/tmp/to_scwrl_1178704205.seq -o /var/tmp/from_scwrl_1178704205.pdb > /var/tmp/scwrl_1178704205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1178704205.pdb Number of alignments=193 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-global-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)V162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 9 :NH T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQ 1dc1A 41 :PYIERAR T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1dc1A 59 :PKDLLYLEDIQDALLYASGISDKAKKFLTEDDK T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETM 1dc1A 92 :KESINNLIENFLEPAGEEFIDELIFRYLLFQGDSL T0287 97 :ELLHAIAEN 1dc1A 132 :NIAGALAQQ T0287 106 :PNFLFSKFDR 1dc1A 143 :TRAIISALDI T0287 116 :SILGIFLPF 1dc1A 154 :NIPYKWLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLKL 1dc1A 206 :LVKK T0287 155 :FVMTDEE 1dc1A 213 :ICLFNCE T0287 172 :E 1dc1A 231 :Q T0287 174 :YNDYVRDLLMKFDLEKYMK 1dc1A 232 :PEKYLLLGELKGGIDPAGA Number of specific fragments extracted= 14 number of extra gaps= 2 total=1672 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_628883001.pdb -s /var/tmp/to_scwrl_628883001.seq -o /var/tmp/from_scwrl_628883001.pdb > /var/tmp/scwrl_628883001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_628883001.pdb Number of alignments=194 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)F155 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKE 1dc1A 22 :EEYRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKI 1dc1A 83 :KKFLTEDDKKES T0287 47 :MHDFFKQMHTNKG 1dc1A 95 :INNLIENFLEPAG T0287 60 :ALDKVLRNYMKDYRA 1dc1A 110 :FIDELIFRYLLFQGD T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1dc1A 125 :SLGGTMRNIAGALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 159 :D 1dc1A 231 :Q T0287 161 :EVNFY 1dc1A 232 :PEKYL T0287 166 :ANLKTIEQYNDYVRDLLMK 1dc1A 245 :IDPAGADEHWKTANTALTR T0287 187 :LEKYMKEKGVQ 1dc1A 264 :IRNKFSEKGLS Number of specific fragments extracted= 14 number of extra gaps= 1 total=1686 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1748258182.pdb -s /var/tmp/to_scwrl_1748258182.seq -o /var/tmp/from_scwrl_1748258182.pdb > /var/tmp/scwrl_1748258182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1748258182.pdb Number of alignments=195 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKIIDQI 1dc1A 60 :KDLLYLEDIQDALLYA T0287 45 :KTMHDFFKQMHTN 1dc1A 89 :DDKKESINNLIEN T0287 58 :KGALDKVLRNYMKDYRAVIKS 1dc1A 108 :EEFIDELIFRYLLFQGDSLGG T0287 83 :KFKKVY 1dc1A 129 :TMRNIA T0287 89 :RLLESETMELLHAIAENPNFLF 1dc1A 136 :ALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQN 1dc1A 268 :FSEKGLSP Number of specific fragments extracted= 13 number of extra gaps= 1 total=1699 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1510049911.pdb -s /var/tmp/to_scwrl_1510049911.seq -o /var/tmp/from_scwrl_1510049911.pdb > /var/tmp/scwrl_1510049911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1510049911.pdb Number of alignments=196 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-local-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t04-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1700 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1931905145.pdb -s /var/tmp/to_scwrl_1931905145.seq -o /var/tmp/from_scwrl_1931905145.pdb > /var/tmp/scwrl_1931905145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931905145.pdb Number of alignments=197 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-local-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-local-adpstyle5.a2m # found chain 1dc1A in training set T0287 19 :KEKLIESLQENELL 1dc1A 91 :KKESINNLIENFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1701 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0287 14 :DSKDKKEKLIESLQENELLNTDE 1dc1A 86 :LTEDDKKESINNLIENFLEPAGE T0287 39 :KIIDQIKTMHDFFKQ 1dc1A 109 :EFIDELIFRYLLFQG T0287 59 :GALDKVLRNYMK 1dc1A 124 :DSLGGTMRNIAG T0287 75 :VI 1dc1A 136 :AL T0287 91 :LESETMELLHAIAENPNFL 1dc1A 138 :AQQKLTRAIISALDIANIP T0287 119 :GIFLPF 1dc1A 157 :YKWLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 151 :LLKLFVMTDE 1dc1A 183 :FAKGISWTIN Number of specific fragments extracted= 8 number of extra gaps= 1 total=1709 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_892864505.pdb -s /var/tmp/to_scwrl_892864505.seq -o /var/tmp/from_scwrl_892864505.pdb > /var/tmp/scwrl_892864505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_892864505.pdb Number of alignments=198 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE T0287 40 :IIDQIKTMHDFFKQ 1dc1A 110 :FIDELIFRYLLFQG T0287 59 :GALDKVLRNYMKDYRA 1dc1A 124 :DSLGGTMRNIAGALAQ T0287 85 :KKVYRL 1dc1A 140 :QKLTRA T0287 95 :TMELLHAI 1dc1A 146 :IISALDIA T0287 103 :A 1dc1A 162 :S T0287 106 :PNFL 1dc1A 165 :KKYT T0287 110 :FSKFDRSILGIFLPFFSKP 1dc1A 177 :DYELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQ 1dc1A 268 :FSEKGLS Number of specific fragments extracted= 13 number of extra gaps= 2 total=1722 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1146964625.pdb -s /var/tmp/to_scwrl_1146964625.seq -o /var/tmp/from_scwrl_1146964625.pdb > /var/tmp/scwrl_1146964625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1146964625.pdb Number of alignments=199 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-global-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t06-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIEL 1dc1A 70 :DALLYASGISDKAKKFLTEDDKKESINNLIENFLEPAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALDI T0287 147 :TNLPLLKLFV 1dc1A 153 :ANIPYKWLDS T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQ 1dc1A 165 :KKYTNWMDKPEDDYELETFAKGISWTINGKHRTLMYNIT Number of specific fragments extracted= 4 number of extra gaps= 2 total=1726 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1570219997.pdb -s /var/tmp/to_scwrl_1570219997.seq -o /var/tmp/from_scwrl_1570219997.pdb > /var/tmp/scwrl_1570219997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1570219997.pdb Number of alignments=200 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-global-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)V162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 9 :NH T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQ 1dc1A 41 :PYIERAR T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1dc1A 59 :PKDLLYLEDIQDALLYASGISDKAKKFLTEDDK T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETM 1dc1A 92 :KESINNLIENFLEPAGEEFIDELIFRYLLFQGDSL T0287 97 :ELLHAIAEN 1dc1A 132 :NIAGALAQQ T0287 106 :PNFLFSKFDR 1dc1A 143 :TRAIISALDI T0287 116 :SILGIFLPF 1dc1A 154 :NIPYKWLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLKL 1dc1A 206 :LVKK T0287 155 :FVMTDEE 1dc1A 213 :ICLFNCE T0287 172 :E 1dc1A 231 :Q T0287 174 :YNDYVRDLLMKFDLEKYMK 1dc1A 232 :PEKYLLLGELKGGIDPAGA Number of specific fragments extracted= 14 number of extra gaps= 2 total=1740 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1596388215.pdb -s /var/tmp/to_scwrl_1596388215.seq -o /var/tmp/from_scwrl_1596388215.pdb > /var/tmp/scwrl_1596388215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1596388215.pdb Number of alignments=201 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)F155 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKE 1dc1A 22 :EEYRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKI 1dc1A 83 :KKFLTEDDKKES T0287 47 :MHDFFKQMHTNKG 1dc1A 95 :INNLIENFLEPAG T0287 60 :ALDKVLRNYMKDYRA 1dc1A 110 :FIDELIFRYLLFQGD T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1dc1A 125 :SLGGTMRNIAGALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 159 :D 1dc1A 231 :Q T0287 161 :EVNFY 1dc1A 232 :PEKYL T0287 166 :ANLKTIEQYNDYVRDLLMK 1dc1A 245 :IDPAGADEHWKTANTALTR T0287 187 :LEKYMKEKGVQ 1dc1A 264 :IRNKFSEKGLS Number of specific fragments extracted= 14 number of extra gaps= 1 total=1754 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_98579299.pdb -s /var/tmp/to_scwrl_98579299.seq -o /var/tmp/from_scwrl_98579299.pdb > /var/tmp/scwrl_98579299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_98579299.pdb Number of alignments=202 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKIIDQI 1dc1A 60 :KDLLYLEDIQDALLYA T0287 45 :KTMHDFFKQMHTN 1dc1A 89 :DDKKESINNLIEN T0287 58 :KGALDKVLRNYMKDYRAVIKS 1dc1A 108 :EEFIDELIFRYLLFQGDSLGG T0287 83 :KFKKVY 1dc1A 129 :TMRNIA T0287 89 :RLLESETMELLHAIAENPNFLF 1dc1A 136 :ALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQN 1dc1A 268 :FSEKGLSP Number of specific fragments extracted= 13 number of extra gaps= 1 total=1767 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_496642372.pdb -s /var/tmp/to_scwrl_496642372.seq -o /var/tmp/from_scwrl_496642372.pdb > /var/tmp/scwrl_496642372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_496642372.pdb Number of alignments=203 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-local-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t06-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1768 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2116592504.pdb -s /var/tmp/to_scwrl_2116592504.seq -o /var/tmp/from_scwrl_2116592504.pdb > /var/tmp/scwrl_2116592504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2116592504.pdb Number of alignments=204 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-local-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-local-adpstyle5.a2m # found chain 1dc1A in training set T0287 19 :KEKLIESLQENELL 1dc1A 91 :KKESINNLIENFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1769 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0287 14 :DSKDKKEKLIESLQENELLNTDE 1dc1A 86 :LTEDDKKESINNLIENFLEPAGE T0287 39 :KIIDQIKTMHDFFKQ 1dc1A 109 :EFIDELIFRYLLFQG T0287 59 :GALDKVLRNYMK 1dc1A 124 :DSLGGTMRNIAG T0287 75 :VI 1dc1A 136 :AL T0287 91 :LESETMELLHAIAENPNFL 1dc1A 138 :AQQKLTRAIISALDIANIP T0287 119 :GIFLPF 1dc1A 157 :YKWLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 151 :LLKLFVMTDE 1dc1A 183 :FAKGISWTIN Number of specific fragments extracted= 8 number of extra gaps= 1 total=1777 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_338080850.pdb -s /var/tmp/to_scwrl_338080850.seq -o /var/tmp/from_scwrl_338080850.pdb > /var/tmp/scwrl_338080850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_338080850.pdb Number of alignments=205 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE T0287 40 :IIDQIKTMHDFFKQ 1dc1A 110 :FIDELIFRYLLFQG T0287 59 :GALDKVLRNYMKDYRA 1dc1A 124 :DSLGGTMRNIAGALAQ T0287 85 :KKVYRL 1dc1A 140 :QKLTRA T0287 95 :TMELLHAI 1dc1A 146 :IISALDIA T0287 103 :A 1dc1A 162 :S T0287 106 :PNFL 1dc1A 165 :KKYT T0287 110 :FSKFDRSILGIFLPFFSKP 1dc1A 177 :DYELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQ 1dc1A 268 :FSEKGLS Number of specific fragments extracted= 13 number of extra gaps= 2 total=1790 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_509705688.pdb -s /var/tmp/to_scwrl_509705688.seq -o /var/tmp/from_scwrl_509705688.pdb > /var/tmp/scwrl_509705688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_509705688.pdb Number of alignments=206 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-global-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t2k-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIEL 1dc1A 70 :DALLYASGISDKAKKFLTEDDKKESINNLIENFLEPAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALDI T0287 147 :TNLPLLKLFV 1dc1A 153 :ANIPYKWLDS T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQ 1dc1A 165 :KKYTNWMDKPEDDYELETFAKGISWTINGKHRTLMYNIT Number of specific fragments extracted= 4 number of extra gaps= 2 total=1794 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1157556633.pdb -s /var/tmp/to_scwrl_1157556633.seq -o /var/tmp/from_scwrl_1157556633.pdb > /var/tmp/scwrl_1157556633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1157556633.pdb Number of alignments=207 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-global-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)V162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 9 :NH T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQ 1dc1A 41 :PYIERAR T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1dc1A 59 :PKDLLYLEDIQDALLYASGISDKAKKFLTEDDK T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETM 1dc1A 92 :KESINNLIENFLEPAGEEFIDELIFRYLLFQGDSL T0287 97 :ELLHAIAEN 1dc1A 132 :NIAGALAQQ T0287 106 :PNFLFSKFDR 1dc1A 143 :TRAIISALDI T0287 116 :SILGIFLPF 1dc1A 154 :NIPYKWLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLKL 1dc1A 206 :LVKK T0287 155 :FVMTDEE 1dc1A 213 :ICLFNCE T0287 172 :E 1dc1A 231 :Q T0287 174 :YNDYVRDLLMKFDLEKYMK 1dc1A 232 :PEKYLLLGELKGGIDPAGA Number of specific fragments extracted= 14 number of extra gaps= 2 total=1808 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_967362774.pdb -s /var/tmp/to_scwrl_967362774.seq -o /var/tmp/from_scwrl_967362774.pdb > /var/tmp/scwrl_967362774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_967362774.pdb Number of alignments=208 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)F155 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKII 1dc1A 60 :KDLLYLEDIQDAL T0287 42 :DQIKTMHDFFKQMHTNKG 1dc1A 90 :DKKESINNLIENFLEPAG T0287 60 :ALDKVLRNYMKDYR 1dc1A 110 :FIDELIFRYLLFQG T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1dc1A 124 :DSLGGTMRNIAGALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 159 :D 1dc1A 231 :Q T0287 161 :EVNF 1dc1A 232 :PEKY T0287 166 :ANLKTIEQYNDYVRDLLMK 1dc1A 245 :IDPAGADEHWKTANTALTR T0287 187 :LEKYMKEKGVQ 1dc1A 264 :IRNKFSEKGLS Number of specific fragments extracted= 14 number of extra gaps= 1 total=1822 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1978919718.pdb -s /var/tmp/to_scwrl_1978919718.seq -o /var/tmp/from_scwrl_1978919718.pdb > /var/tmp/scwrl_1978919718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1978919718.pdb Number of alignments=209 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKIIDQI 1dc1A 60 :KDLLYLEDIQDALLYA T0287 45 :KTMHDFFKQMHTN 1dc1A 89 :DDKKESINNLIEN T0287 58 :KGALDKVLRNYMKDYRAVIKS 1dc1A 108 :EEFIDELIFRYLLFQGDSLGG T0287 83 :KFKKVY 1dc1A 129 :TMRNIA T0287 89 :RLLESETMELLHAIAENPNFLF 1dc1A 136 :ALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQN 1dc1A 268 :FSEKGLSP Number of specific fragments extracted= 13 number of extra gaps= 1 total=1835 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_203495999.pdb -s /var/tmp/to_scwrl_203495999.seq -o /var/tmp/from_scwrl_203495999.pdb > /var/tmp/scwrl_203495999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203495999.pdb Number of alignments=210 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-local-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t2k-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1836 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1396381657.pdb -s /var/tmp/to_scwrl_1396381657.seq -o /var/tmp/from_scwrl_1396381657.pdb > /var/tmp/scwrl_1396381657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1396381657.pdb Number of alignments=211 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-local-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-local-adpstyle5.a2m # found chain 1dc1A in training set T0287 19 :KEKLIESLQENELL 1dc1A 91 :KKESINNLIENFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1837 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0287 14 :DSKDKKEKLIESLQENELLNTDE 1dc1A 86 :LTEDDKKESINNLIENFLEPAGE T0287 39 :KIIDQIKTMHDFFKQ 1dc1A 109 :EFIDELIFRYLLFQG T0287 59 :GALDKVLRNYMKDYRA 1dc1A 124 :DSLGGTMRNIAGALAQ T0287 85 :KKV 1dc1A 140 :QKL T0287 95 :TMELLHAI 1dc1A 143 :TRAIISAL T0287 104 :ENPN 1dc1A 151 :DIAN T0287 117 :ILGIFLPF 1dc1A 155 :IPYKWLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 151 :LLKLFVMTDE 1dc1A 183 :FAKGISWTIN Number of specific fragments extracted= 9 number of extra gaps= 1 total=1846 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2057592732.pdb -s /var/tmp/to_scwrl_2057592732.seq -o /var/tmp/from_scwrl_2057592732.pdb > /var/tmp/scwrl_2057592732.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2057592732.pdb Number of alignments=212 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE T0287 40 :IIDQIKTMHDFFKQ 1dc1A 110 :FIDELIFRYLLFQG T0287 59 :GALDKVLRNYMKDYRA 1dc1A 124 :DSLGGTMRNIAGALAQ T0287 85 :KKVYRL 1dc1A 140 :QKLTRA T0287 95 :TMELLHAI 1dc1A 146 :IISALDIA T0287 103 :A 1dc1A 162 :S T0287 106 :PNFL 1dc1A 165 :KKYT T0287 110 :FSKFDRSILGIFLPFFSKP 1dc1A 177 :DYELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQ 1dc1A 268 :FSEKGLS Number of specific fragments extracted= 13 number of extra gaps= 2 total=1859 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1921397579.pdb -s /var/tmp/to_scwrl_1921397579.seq -o /var/tmp/from_scwrl_1921397579.pdb > /var/tmp/scwrl_1921397579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1921397579.pdb Number of alignments=213 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-muscle.a2m.gz # 1dc1A read from T0287-1dc1A-t04-muscle.a2m.gz # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKEK 1dc1A 22 :EEYRAGFIAFALEKNKRST T0287 22 :LIESLQENELLNTDEKKK 1dc1A 42 :YIERARALKVAASVAKTP T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1dc1A 60 :KDLLYLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIENF T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 1dc1A 113 :ELIFRYLLFQGDSLGGTMRNIAGALAQ T0287 112 :KFDRSILGIFL 1dc1A 141 :KLTRAIISALD T0287 123 :PFFSKP 1dc1A 169 :NWMDKP T0287 129 :IMFKMSIREMDSQIE 1dc1A 178 :YELETFAKGISWTIN T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 161 :EVNFYANLKTI 1dc1A 231 :QPEKYLLLGEL T0287 172 :EQYNDYVRDLLMKFD 1dc1A 255 :KTANTALTRIRNKFS T0287 187 :LEKYMKE 1dc1A 284 :IEHSMAE T0287 194 :KGVQNA 1dc1A 318 :RWIINI Number of specific fragments extracted= 14 number of extra gaps= 2 total=1873 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1447072029.pdb -s /var/tmp/to_scwrl_1447072029.seq -o /var/tmp/from_scwrl_1447072029.pdb > /var/tmp/scwrl_1447072029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1447072029.pdb Number of alignments=214 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-muscle.a2m.gz # 1dc1A read from T0287-1dc1A-t06-muscle.a2m.gz # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1dc1A 9 :NHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTP T0287 36 :EKKKII 1dc1A 44 :ERARAL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1dc1A 60 :KDLLYLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIENF T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 1dc1A 113 :ELIFRYLLFQGDSLGGTMRNIAGALAQ T0287 112 :KFDRSILGIFL 1dc1A 141 :KLTRAIISALD T0287 123 :PFFSKP 1dc1A 169 :NWMDKP T0287 129 :IMFKMSIREMDSQIE 1dc1A 178 :YELETFAKGISWTIN T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 161 :EVNFYANLKTI 1dc1A 231 :QPEKYLLLGEL T0287 172 :EQYNDYVRDLLMKFD 1dc1A 255 :KTANTALTRIRNKFS T0287 187 :LEKYMKE 1dc1A 284 :IEHSMAE T0287 194 :KGVQNA 1dc1A 318 :RWIINI Number of specific fragments extracted= 14 number of extra gaps= 2 total=1887 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1118874197.pdb -s /var/tmp/to_scwrl_1118874197.seq -o /var/tmp/from_scwrl_1118874197.pdb > /var/tmp/scwrl_1118874197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118874197.pdb Number of alignments=215 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-muscle.a2m.gz # 1dc1A read from T0287-1dc1A-t2k-muscle.a2m.gz # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1dc1A 9 :NHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTP T0287 36 :EKKKII 1dc1A 44 :ERARAL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1dc1A 60 :KDLLYLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIENF T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 1dc1A 113 :ELIFRYLLFQGDSLGGTMRNIAGALAQ T0287 112 :KFDRSILGIFL 1dc1A 141 :KLTRAIISALD T0287 123 :PFFSKP 1dc1A 169 :NWMDKP T0287 129 :IMFKMSIREMDSQIE 1dc1A 178 :YELETFAKGISWTIN T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 161 :EVNFYANLKTI 1dc1A 231 :QPEKYLLLGEL T0287 172 :EQYNDYVRDLLMKFD 1dc1A 255 :KTANTALTRIRNKFS T0287 187 :LEKYMKE 1dc1A 284 :IEHSMAE T0287 194 :KGVQNA 1dc1A 318 :RWIINI Number of specific fragments extracted= 14 number of extra gaps= 2 total=1901 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1449105746.pdb -s /var/tmp/to_scwrl_1449105746.seq -o /var/tmp/from_scwrl_1449105746.pdb > /var/tmp/scwrl_1449105746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1449105746.pdb Number of alignments=216 # command:# Prefix for input files set to 1dh3A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a02J-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a02J-T0287-fssp-global-adpstyle5.a2m # 1dh3A read from 1a02J-T0287-fssp-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)L61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)D62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 11 :M 1dh3A 288 :V T0287 14 :DSKDKKEKLIESLQENE 1dh3A 291 :MKNREAARESRRKKKEY T0287 33 :NTDEK 1dh3A 310 :SLENR T0287 40 :IIDQIKTMHDF 1dh3A 317 :VLENQNKTLIE T0287 54 :MHT 1dh3A 331 :ALK T0287 59 :GA 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1907 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a02J-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a02J-T0287-fssp-local-adpstyle5.a2m # 1dh3A read from 1a02J-T0287-fssp-local-adpstyle5.a2m # found chain 1dh3A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1907 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dh3A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dh3A-T0287-t2k-global-adpstyle1.a2m # 1dh3A read from 1dh3A-T0287-t2k-global-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 286 :REV T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1913 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dh3A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dh3A-T0287-t2k-global-adpstyle5.a2m # 1dh3A read from 1dh3A-T0287-t2k-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :M 1dh3A 285 :K T0287 2 :SN 1dh3A 287 :EV T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 7 number of extra gaps= 6 total=1920 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dh3A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dh3A-T0287-t2k-local-adpstyle1.a2m # 1dh3A read from 1dh3A-T0287-t2k-local-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=1925 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dh3A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dh3A-T0287-t2k-local-adpstyle5.a2m # 1dh3A read from 1dh3A-T0287-t2k-local-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=1930 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-simplesw-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-simplesw-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=1935 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-simplesw-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-simplesw-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 5 number of extra gaps= 4 total=1940 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-global-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t04-global-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1946 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-global-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1952 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1958 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :M 1dh3A 285 :K T0287 15 :SKD 1dh3A 286 :REV T0287 20 :EKLIESLQENE 1dh3A 291 :MKNREAARESR T0287 45 :KTMHDF 1dh3A 302 :RKKKEY T0287 53 :QMHTN 1dh3A 310 :SLENR T0287 60 :AL 1dh3A 317 :VL T0287 92 :ESETMELLH 1dh3A 319 :ENQNKTLIE T0287 191 :MKE 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 9 number of extra gaps= 6 total=1967 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_512462083.pdb -s /var/tmp/to_scwrl_512462083.seq -o /var/tmp/from_scwrl_512462083.pdb > /var/tmp/scwrl_512462083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512462083.pdb Number of alignments=217 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-local-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t04-local-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=1972 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-local-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-local-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 5 number of extra gaps= 4 total=1977 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 5 total=1981 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 T0287 7 :KLFSMIADSKDKKEKL 1dh3A 292 :KNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 3 total=1985 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-global-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t06-global-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1991 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-global-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1997 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=2003 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :M 1dh3A 285 :K T0287 15 :SKD 1dh3A 286 :REV T0287 20 :EKLIESLQENE 1dh3A 291 :MKNREAARESR T0287 45 :KTMHDF 1dh3A 302 :RKKKEY T0287 53 :QMHTN 1dh3A 310 :SLENR T0287 60 :AL 1dh3A 317 :VL T0287 92 :ESETMELLH 1dh3A 319 :ENQNKTLIE T0287 191 :MKE 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 9 number of extra gaps= 6 total=2012 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_561296918.pdb -s /var/tmp/to_scwrl_561296918.seq -o /var/tmp/from_scwrl_561296918.pdb > /var/tmp/scwrl_561296918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561296918.pdb Number of alignments=218 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-local-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t06-local-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=2017 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-local-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-local-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 5 number of extra gaps= 4 total=2022 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 5 total=2026 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 T0287 7 :KLFSMIADSKDKKEKL 1dh3A 292 :KNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 3 total=2030 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-global-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t2k-global-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=2036 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-global-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=2042 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=2048 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :M 1dh3A 285 :K T0287 15 :SKD 1dh3A 286 :REV T0287 20 :EKLIESLQENE 1dh3A 291 :MKNREAARESR T0287 45 :KTMHDF 1dh3A 302 :RKKKEY T0287 53 :QMHTN 1dh3A 310 :SLENR T0287 60 :AL 1dh3A 317 :VL T0287 92 :ESETMELLH 1dh3A 319 :ENQNKTLIE T0287 191 :MKE 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 9 number of extra gaps= 6 total=2057 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2042325634.pdb -s /var/tmp/to_scwrl_2042325634.seq -o /var/tmp/from_scwrl_2042325634.pdb > /var/tmp/scwrl_2042325634.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2042325634.pdb Number of alignments=219 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-local-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t2k-local-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=2062 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-local-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-local-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 5 number of extra gaps= 4 total=2067 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 5 total=2071 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 T0287 7 :KLFSMIADSKDKKEKL 1dh3A 292 :KNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 3 total=2075 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-muscle.a2m.gz # 1dh3A read from T0287-1dh3A-t2k-muscle.a2m.gz # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 286 :REV T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y T0287 197 :Q 1dh3A 337 :S Number of specific fragments extracted= 7 number of extra gaps= 6 total=2082 # command:# Prefix for input files set to 1dk0A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b2vA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b2vA-T0287-fssp-global-adpstyle5.a2m # 1dk0A read from 1b2vA-T0287-fssp-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SK 1dk0A 9 :SS T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDK 1dk0A 45 :FYGGSLSG T0287 88 :YRLLES 1dk0A 53 :SQYAIS T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDT T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLK 1dk0A 110 :VPDVSFGGLNLSSLQAQGHDGVVHQVVYGLM T0287 170 :TIEQYNDYVRD 1dk0A 143 :DTGALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMKEKGVQNA 1dk0A 160 :LSVNSTFDQVAAATA Number of specific fragments extracted= 12 number of extra gaps= 6 total=2094 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1958731569.pdb -s /var/tmp/to_scwrl_1958731569.seq -o /var/tmp/from_scwrl_1958731569.pdb > /var/tmp/scwrl_1958731569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1958731569.pdb Number of alignments=220 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b2vA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b2vA-T0287-fssp-local-adpstyle5.a2m # 1dk0A read from 1b2vA-T0287-fssp-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2096 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t04-global-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t04-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)F121 because last residue in template chain is (1dk0A)A174 T0287 2 :SNNMRKLFSMIA 1dk0A 24 :ASTFGDVNHTNG T0287 16 :KD 1dk0A 38 :TD T0287 18 :KKEKLIESLQENE 1dk0A 46 :YGGSLSGSQYAIS T0287 33 :NTDEK 1dk0A 61 :ANQVT T0287 40 :IIDQIKTMHDFFKQMHTNKGALDKVL 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLS T0287 66 :R 1dk0A 105 :P T0287 69 :MKDYRAVIKSIGVDKF 1dk0A 108 :IQVPDVSFGGLNLSSL T0287 85 :KKVYRLLESETMEL 1dk0A 134 :QVVYGLMSGDTGAL T0287 99 :LHA 1dk0A 151 :LNG T0287 104 :ENPNF 1dk0A 156 :DDYGL T0287 109 :LFSKFDRSILGI 1dk0A 162 :VNSTFDQVAAAT Number of specific fragments extracted= 11 number of extra gaps= 5 total=2107 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1667378360.pdb -s /var/tmp/to_scwrl_1667378360.seq -o /var/tmp/from_scwrl_1667378360.pdb > /var/tmp/scwrl_1667378360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1667378360.pdb Number of alignments=221 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t04-global-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t04-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IK 1dk0A 45 :FY T0287 78 :SIG 1dk0A 56 :AIS T0287 83 :K 1dk0A 61 :A T0287 85 :KKVY 1dk0A 62 :NQVT T0287 91 :LESE 1dk0A 68 :VAGG T0287 98 :LLHAIAENP 1dk0A 73 :LTYTLFNEP T0287 107 :NFLFSKFDRSILGIFL 1dk0A 83 :HTLYGQLDSLSFGDGL T0287 135 :IREMD 1dk0A 101 :GDTSP T0287 142 :IELYGTNLPLLKLFVMTDEE 1dk0A 108 :IQVPDVSFGGLNLSSLQAQG T0287 167 :NLKTIEQYNDY 1dk0A 143 :DTGALETALNG T0287 180 :D 1dk0A 156 :D T0287 182 :LMKFDLEKYMKEKGVQNA 1dk0A 157 :DYGLSVNSTFDQVAAATA Number of specific fragments extracted= 16 number of extra gaps= 8 total=2123 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_787806207.pdb -s /var/tmp/to_scwrl_787806207.seq -o /var/tmp/from_scwrl_787806207.pdb > /var/tmp/scwrl_787806207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_787806207.pdb Number of alignments=222 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t04-local-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t04-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 54 :MHTNKGALDKVLRN 1dk0A 140 :MSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2125 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t04-local-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t04-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 52 :KQMHTNKGALDKVLRN 1dk0A 138 :GLMSGDTGALETALNG T0287 70 :KDYRAVIK 1dk0A 156 :DDYGLSVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=2127 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t06-global-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t06-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 4 :NMRK 1dk0A 3 :FSVN T0287 10 :SMIAD 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 74 :AVIKSIG 1dk0A 52 :GSQYAIS T0287 83 :KFKKV 1dk0A 61 :ANQVT T0287 90 :LLESETMELL 1dk0A 68 :VAGGNLTYTL T0287 102 :IAENPNFLFSKFDRSILGIFL 1dk0A 78 :FNEPAHTLYGQLDSLSFGDGL T0287 135 :IREMDSQ 1dk0A 99 :SGGDTSP T0287 144 :LYGTNLPLLKLFVMTDEE 1dk0A 108 :IQVPDVSFGGLNLSSLQA T0287 168 :LKTIEQYNDYVRDLL 1dk0A 126 :QGHDGVVHQVVYGLM T0287 183 :MKFDLEK 1dk0A 147 :LETALNG T0287 192 :KEKGVQ 1dk0A 156 :DDYGLS T0287 198 :NA 1dk0A 173 :TA Number of specific fragments extracted= 14 number of extra gaps= 7 total=2141 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2150949.pdb -s /var/tmp/to_scwrl_2150949.seq -o /var/tmp/from_scwrl_2150949.pdb > /var/tmp/scwrl_2150949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2150949.pdb Number of alignments=223 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t06-global-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t06-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)R66 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 11 :MIA 1dk0A 4 :SVN T0287 16 :KDKKE 1dk0A 9 :SSFGG T0287 23 :IESLQENELLNTDEKKKIID 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 68 :YM 1dk0A 45 :FY T0287 70 :KDYRAVIKSIG 1dk0A 48 :GSLSGSQYAIS T0287 83 :KFKKV 1dk0A 61 :ANQVT T0287 90 :LLESE 1dk0A 68 :VAGGN T0287 98 :LLHAIAENP 1dk0A 73 :LTYTLFNEP T0287 107 :NFLFSKFDRSILGIFL 1dk0A 83 :HTLYGQLDSLSFGDGL T0287 135 :IREMDSQ 1dk0A 99 :SGGDTSP T0287 144 :LYGTNLPLLKLFVMTDEE 1dk0A 108 :IQVPDVSFGGLNLSSLQA T0287 171 :IEQYNDYVRDLL 1dk0A 129 :DGVVHQVVYGLM T0287 183 :MKFDLEK 1dk0A 147 :LETALNG T0287 192 :KEKGVQ 1dk0A 156 :DDYGLS T0287 198 :NA 1dk0A 173 :TA Number of specific fragments extracted= 15 number of extra gaps= 7 total=2156 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_698598919.pdb -s /var/tmp/to_scwrl_698598919.seq -o /var/tmp/from_scwrl_698598919.pdb > /var/tmp/scwrl_698598919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698598919.pdb Number of alignments=224 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t06-local-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t06-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 183 :MKFDLEK 1dk0A 147 :LETALNG T0287 192 :KEKGV 1dk0A 156 :DDYGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=2158 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t06-local-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t06-local-adpstyle5.a2m # found chain 1dk0A in training set T0287 98 :LLHAIAENP 1dk0A 73 :LTYTLFNEP T0287 107 :NFLFSKFDRSILGIFL 1dk0A 83 :HTLYGQLDSLSFGDGL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2160 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1416689207.pdb -s /var/tmp/to_scwrl_1416689207.seq -o /var/tmp/from_scwrl_1416689207.pdb > /var/tmp/scwrl_1416689207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416689207.pdb Number of alignments=225 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t2k-global-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t2k-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)Y88 because last residue in template chain is (1dk0A)A174 T0287 1 :MSNNMRKLFSMIADSKDKK 1dk0A 16 :IHDYLGQWASTFGDVNHTN T0287 20 :E 1dk0A 65 :T T0287 23 :IESLQENELLNTDEKKKIIDQIKTM 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSL T0287 48 :HDFFKQMHTNKGALDKVLRN 1dk0A 134 :QVVYGLMSGDTGALETALNG T0287 70 :KDYRAVIKSIGVDKFKKV 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 5 number of extra gaps= 2 total=2165 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1750409131.pdb -s /var/tmp/to_scwrl_1750409131.seq -o /var/tmp/from_scwrl_1750409131.pdb > /var/tmp/scwrl_1750409131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750409131.pdb Number of alignments=226 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t2k-global-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t2k-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 1 :MSNNMRKLFSMIADSKDKK 1dk0A 16 :IHDYLGQWASTFGDVNHTN T0287 20 :E 1dk0A 65 :T T0287 23 :IESLQENELLNTDEKKKIIDQIKTM 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSL T0287 48 :H 1dk0A 115 :F T0287 49 :DFFKQMHTNKGALDKVLRN 1dk0A 135 :VVYGLMSGDTGALETALNG T0287 70 :KDYRAVIKSI 1dk0A 156 :DDYGLSVNST Number of specific fragments extracted= 6 number of extra gaps= 2 total=2171 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_61165184.pdb -s /var/tmp/to_scwrl_61165184.seq -o /var/tmp/from_scwrl_61165184.pdb > /var/tmp/scwrl_61165184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_61165184.pdb Number of alignments=227 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t2k-local-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t2k-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2173 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t2k-local-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t2k-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2175 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-simplesw-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-simplesw-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2177 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-simplesw-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-simplesw-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2179 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-global-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t04-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)K7 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :NNMR 1dk0A 3 :FSVN T0287 9 :FSMIA 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDKFKKVY 1dk0A 45 :FYGGSLSGSQYAI T0287 93 :S 1dk0A 58 :S T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 11 number of extra gaps= 7 total=2190 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1201110706.pdb -s /var/tmp/to_scwrl_1201110706.seq -o /var/tmp/from_scwrl_1201110706.pdb > /var/tmp/scwrl_1201110706.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201110706.pdb Number of alignments=228 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-global-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :N 1dk0A 3 :F T0287 10 :SMI 1dk0A 4 :SVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVD 1dk0A 45 :FYGGSLS T0287 87 :VYRLLES 1dk0A 52 :GSQYAIS T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 12 number of extra gaps= 7 total=2202 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_495789989.pdb -s /var/tmp/to_scwrl_495789989.seq -o /var/tmp/from_scwrl_495789989.pdb > /var/tmp/scwrl_495789989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_495789989.pdb Number of alignments=229 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGAL 1dk0A 16 :IHDYLGQWASTFGDV T0287 77 :KSI 1dk0A 33 :TNG T0287 82 :DKFKK 1dk0A 38 :TDANS T0287 109 :LFS 1dk0A 56 :AIS T0287 114 :DRSIL 1dk0A 61 :ANQVT T0287 119 :GIFLPFFSKP 1dk0A 72 :NLTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 105 :P T0287 147 :TNLPLLKLF 1dk0A 108 :IQVPDVSFG T0287 156 :VMTDEEVNFYANLKTI 1dk0A 120 :LSSLQAQGHDGVVHQV T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMK 1dk0A 166 :FDQVAAAT Number of specific fragments extracted= 15 number of extra gaps= 6 total=2217 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1208129809.pdb -s /var/tmp/to_scwrl_1208129809.seq -o /var/tmp/from_scwrl_1208129809.pdb > /var/tmp/scwrl_1208129809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1208129809.pdb Number of alignments=230 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)G195 because last residue in template chain is (1dk0A)A174 T0287 11 :MI 1dk0A 5 :VN T0287 15 :SK 1dk0A 9 :SS T0287 31 :L 1dk0A 11 :F T0287 37 :KK 1dk0A 12 :GG T0287 47 :MHDFFKQMHT 1dk0A 16 :IHDYLGQWAS T0287 75 :VIKSIGVDK 1dk0A 26 :TFGDVNHTN T0287 105 :NPNFL 1dk0A 38 :TDANS T0287 112 :KFDRSILG 1dk0A 45 :FYGGSLSG T0287 120 :IFLPFFSKP 1dk0A 73 :LTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 108 :I T0287 148 :NLPLLKL 1dk0A 109 :QVPDVSF T0287 155 :FVMTDEEVN 1dk0A 120 :LSSLQAQGH T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMKEK 1dk0A 164 :STFDQVAAAT Number of specific fragments extracted= 16 number of extra gaps= 5 total=2233 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_623847057.pdb -s /var/tmp/to_scwrl_623847057.seq -o /var/tmp/from_scwrl_623847057.pdb > /var/tmp/scwrl_623847057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623847057.pdb Number of alignments=231 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-local-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t04-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2235 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-local-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2237 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 80 :GVD 1dk0A 159 :GLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=2240 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2092178205.pdb -s /var/tmp/to_scwrl_2092178205.seq -o /var/tmp/from_scwrl_2092178205.pdb > /var/tmp/scwrl_2092178205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2092178205.pdb Number of alignments=232 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E92 because last residue in template chain is (1dk0A)A174 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 78 :SIGVD 1dk0A 159 :GLSVN T0287 83 :KFKKVYRLL 1dk0A 165 :TFDQVAAAT Number of specific fragments extracted= 4 number of extra gaps= 1 total=2244 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1306709108.pdb -s /var/tmp/to_scwrl_1306709108.seq -o /var/tmp/from_scwrl_1306709108.pdb > /var/tmp/scwrl_1306709108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306709108.pdb Number of alignments=233 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-global-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t06-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)K7 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :NNMR 1dk0A 3 :FSVN T0287 9 :FSMIA 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDKFKKVY 1dk0A 45 :FYGGSLSGSQYAI T0287 93 :S 1dk0A 58 :S T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 11 number of extra gaps= 7 total=2255 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1120489428.pdb -s /var/tmp/to_scwrl_1120489428.seq -o /var/tmp/from_scwrl_1120489428.pdb > /var/tmp/scwrl_1120489428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120489428.pdb Number of alignments=234 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-global-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :N 1dk0A 3 :F T0287 10 :SMI 1dk0A 4 :SVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVD 1dk0A 45 :FYGGSLS T0287 87 :VYRLLES 1dk0A 52 :GSQYAIS T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 12 number of extra gaps= 7 total=2267 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2061287062.pdb -s /var/tmp/to_scwrl_2061287062.seq -o /var/tmp/from_scwrl_2061287062.pdb > /var/tmp/scwrl_2061287062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061287062.pdb Number of alignments=235 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGAL 1dk0A 16 :IHDYLGQWASTFGDV T0287 77 :KSI 1dk0A 33 :TNG T0287 82 :DKFKK 1dk0A 38 :TDANS T0287 109 :LFS 1dk0A 56 :AIS T0287 114 :DRSIL 1dk0A 61 :ANQVT T0287 119 :GIFLPFFSKP 1dk0A 72 :NLTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 105 :P T0287 147 :TNLPLLKLF 1dk0A 108 :IQVPDVSFG T0287 156 :VMTDEEVNFYANLKTI 1dk0A 120 :LSSLQAQGHDGVVHQV T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMK 1dk0A 166 :FDQVAAAT Number of specific fragments extracted= 15 number of extra gaps= 6 total=2282 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1644789959.pdb -s /var/tmp/to_scwrl_1644789959.seq -o /var/tmp/from_scwrl_1644789959.pdb > /var/tmp/scwrl_1644789959.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1644789959.pdb Number of alignments=236 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)G195 because last residue in template chain is (1dk0A)A174 T0287 11 :MI 1dk0A 5 :VN T0287 15 :SK 1dk0A 9 :SS T0287 31 :L 1dk0A 11 :F T0287 37 :KK 1dk0A 12 :GG T0287 47 :MHDFFKQMHT 1dk0A 16 :IHDYLGQWAS T0287 75 :VIKSIGVDK 1dk0A 26 :TFGDVNHTN T0287 105 :NPNFL 1dk0A 38 :TDANS T0287 112 :KFDRSILG 1dk0A 45 :FYGGSLSG T0287 120 :IFLPFFSKP 1dk0A 73 :LTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 108 :I T0287 148 :NLPLLKL 1dk0A 109 :QVPDVSF T0287 155 :FVMTDEEVN 1dk0A 120 :LSSLQAQGH T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMKEK 1dk0A 164 :STFDQVAAAT Number of specific fragments extracted= 16 number of extra gaps= 5 total=2298 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1630195116.pdb -s /var/tmp/to_scwrl_1630195116.seq -o /var/tmp/from_scwrl_1630195116.pdb > /var/tmp/scwrl_1630195116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1630195116.pdb Number of alignments=237 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-local-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t06-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2300 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-local-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2302 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 80 :GVD 1dk0A 159 :GLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=2305 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1071360050.pdb -s /var/tmp/to_scwrl_1071360050.seq -o /var/tmp/from_scwrl_1071360050.pdb > /var/tmp/scwrl_1071360050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1071360050.pdb Number of alignments=238 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E92 because last residue in template chain is (1dk0A)A174 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 78 :SIGVD 1dk0A 159 :GLSVN T0287 83 :KFKKVYRLL 1dk0A 165 :TFDQVAAAT Number of specific fragments extracted= 4 number of extra gaps= 1 total=2309 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_464669086.pdb -s /var/tmp/to_scwrl_464669086.seq -o /var/tmp/from_scwrl_464669086.pdb > /var/tmp/scwrl_464669086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464669086.pdb Number of alignments=239 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-global-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t2k-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)K7 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :NNMR 1dk0A 3 :FSVN T0287 9 :FSMIA 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDKFKKVY 1dk0A 45 :FYGGSLSGSQYAI T0287 93 :S 1dk0A 58 :S T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 11 number of extra gaps= 7 total=2320 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1461631188.pdb -s /var/tmp/to_scwrl_1461631188.seq -o /var/tmp/from_scwrl_1461631188.pdb > /var/tmp/scwrl_1461631188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1461631188.pdb Number of alignments=240 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-global-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :N 1dk0A 3 :F T0287 10 :SMI 1dk0A 4 :SVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVD 1dk0A 45 :FYGGSLS T0287 87 :VYRLLES 1dk0A 52 :GSQYAIS T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 12 number of extra gaps= 7 total=2332 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1274856048.pdb -s /var/tmp/to_scwrl_1274856048.seq -o /var/tmp/from_scwrl_1274856048.pdb > /var/tmp/scwrl_1274856048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274856048.pdb Number of alignments=241 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDK 1dk0A 9 :SSFG T0287 37 :K 1dk0A 13 :G T0287 40 :IIDQIKTMHDFFKQM 1dk0A 16 :IHDYLGQWASTFGDV T0287 55 :HTNK 1dk0A 32 :HTNG T0287 82 :DKFKK 1dk0A 38 :TDANS T0287 108 :F 1dk0A 45 :F T0287 109 :LFS 1dk0A 56 :AIS T0287 114 :DRSIL 1dk0A 61 :ANQVT T0287 119 :GIFLPFFSKP 1dk0A 72 :NLTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 105 :P T0287 147 :TNLPLLKLF 1dk0A 108 :IQVPDVSFG T0287 156 :VMTDEEVNFYANLKTI 1dk0A 120 :LSSLQAQGHDGVVHQV T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 185 :FDLEKYMK 1dk0A 166 :FDQVAAAT Number of specific fragments extracted= 16 number of extra gaps= 7 total=2348 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1861050743.pdb -s /var/tmp/to_scwrl_1861050743.seq -o /var/tmp/from_scwrl_1861050743.pdb > /var/tmp/scwrl_1861050743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861050743.pdb Number of alignments=242 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)G195 because last residue in template chain is (1dk0A)A174 T0287 11 :MI 1dk0A 5 :VN T0287 15 :SK 1dk0A 9 :SS T0287 31 :L 1dk0A 11 :F T0287 37 :KK 1dk0A 12 :GG T0287 47 :MHDFFKQMHT 1dk0A 16 :IHDYLGQWAS T0287 75 :VIKSIGVDK 1dk0A 26 :TFGDVNHTN T0287 105 :NPNFL 1dk0A 38 :TDANS T0287 112 :KFDRSILG 1dk0A 45 :FYGGSLSG T0287 120 :IFLPFFSKP 1dk0A 73 :LTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 108 :I T0287 148 :NLPLLKL 1dk0A 109 :QVPDVSF T0287 155 :FVMTDEEVN 1dk0A 120 :LSSLQAQGH T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMKEK 1dk0A 164 :STFDQVAAAT Number of specific fragments extracted= 16 number of extra gaps= 5 total=2364 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1371740273.pdb -s /var/tmp/to_scwrl_1371740273.seq -o /var/tmp/from_scwrl_1371740273.pdb > /var/tmp/scwrl_1371740273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1371740273.pdb Number of alignments=243 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-local-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t2k-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2366 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-local-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2368 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 36 :EKKKIIDQI 1dk0A 127 :GHDGVVHQV T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 80 :G 1dk0A 159 :G Number of specific fragments extracted= 4 number of extra gaps= 1 total=2372 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1048769981.pdb -s /var/tmp/to_scwrl_1048769981.seq -o /var/tmp/from_scwrl_1048769981.pdb > /var/tmp/scwrl_1048769981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1048769981.pdb Number of alignments=244 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E92 because last residue in template chain is (1dk0A)A174 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 78 :SIGVD 1dk0A 159 :GLSVN T0287 83 :KFKKVYRLL 1dk0A 165 :TFDQVAAAT Number of specific fragments extracted= 4 number of extra gaps= 1 total=2376 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1160639125.pdb -s /var/tmp/to_scwrl_1160639125.seq -o /var/tmp/from_scwrl_1160639125.pdb > /var/tmp/scwrl_1160639125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1160639125.pdb Number of alignments=245 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-muscle.a2m.gz # 1dk0A read from T0287-1dk0A-t04-muscle.a2m.gz # found chain 1dk0A in training set Warning: unaligning (T0287)I23 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)L91 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 24 :ESLQ 1dk0A 3 :FSVN T0287 30 :ELLNT 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDKFKKVYR 1dk0A 45 :FYGGSLSGSQYAIS T0287 92 :ESETM 1dk0A 61 :ANQVT T0287 97 :ELLHAIAENP 1dk0A 72 :NLTYTLFNEP T0287 107 :NFLFSKFDRSILGIFL 1dk0A 83 :HTLYGQLDSLSFGDGL T0287 123 :P 1dk0A 105 :P T0287 126 :SKPIMFKMSIREMDSQIEL 1dk0A 108 :IQVPDVSFGGLNLSSLQAQ T0287 145 :YGTNLPLLKLFVMTDEEVNFYANLKT 1dk0A 128 :HDGVVHQVVYGLMSGDTGALETALNG T0287 175 :NDY 1dk0A 156 :DDY T0287 184 :KFDLEKYMKEKGVQNA 1dk0A 159 :GLSVNSTFDQVAAATA Number of specific fragments extracted= 13 number of extra gaps= 7 total=2389 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_343130825.pdb -s /var/tmp/to_scwrl_343130825.seq -o /var/tmp/from_scwrl_343130825.pdb > /var/tmp/scwrl_343130825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_343130825.pdb Number of alignments=246 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-muscle.a2m.gz # 1dk0A read from T0287-1dk0A-t06-muscle.a2m.gz # found chain 1dk0A in training set Warning: unaligning (T0287)L8 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)K70 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)D71 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 22 :LIESLQENELLNTDEKKKII 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 44 :IKTMH 1dk0A 38 :TDANS T0287 51 :F 1dk0A 45 :F T0287 57 :NKGALDKVLRNYM 1dk0A 46 :YGGSLSGSQYAIS T0287 72 :YRAVI 1dk0A 61 :ANQVT T0287 79 :IGVDKFKKVY 1dk0A 68 :VAGGNLTYTL T0287 102 :IAENPNFLFSKFDRSILGIFLP 1dk0A 78 :FNEPAHTLYGQLDSLSFGDGLS T0287 124 :FF 1dk0A 104 :SP T0287 128 :PIMFKMSIREMDSQIELYGTNLPLLKLFV 1dk0A 108 :IQVPDVSFGGLNLSSLQAQGHDGVVHQVV T0287 157 :MTDEEVNFYANLKT 1dk0A 140 :MSGDTGALETALNG T0287 173 :QYND 1dk0A 156 :DDYG T0287 185 :FDLEKYMKEKGVQNA 1dk0A 160 :LSVNSTFDQVAAATA Number of specific fragments extracted= 14 number of extra gaps= 8 total=2403 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_350392081.pdb -s /var/tmp/to_scwrl_350392081.seq -o /var/tmp/from_scwrl_350392081.pdb > /var/tmp/scwrl_350392081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_350392081.pdb Number of alignments=247 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-muscle.a2m.gz # 1dk0A read from T0287-1dk0A-t2k-muscle.a2m.gz # found chain 1dk0A in training set Warning: unaligning (T0287)L8 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 22 :LIESLQENELLNTDEKKKII 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 44 :IKTMH 1dk0A 38 :TDANS T0287 51 :FKQMHTNKGALD 1dk0A 45 :FYGGSLSGSQYA T0287 65 :LR 1dk0A 57 :IS T0287 69 :MKDYR 1dk0A 61 :ANQVT T0287 76 :IKS 1dk0A 68 :VAG T0287 96 :MELLHAIAENP 1dk0A 71 :GNLTYTLFNEP T0287 107 :NFLFSKFDRSILGIFLPFFSKP 1dk0A 83 :HTLYGQLDSLSFGDGLSGGDTS T0287 132 :K 1dk0A 105 :P T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRD 1dk0A 108 :IQVPDVSFGGLNLSSLQAQGHDGVVHQVVYGLMSGDTGALETALNG T0287 183 :MKFDLEKYMKEKGVQNA 1dk0A 156 :DDYGLSVNSTFDQVAAA Number of specific fragments extracted= 13 number of extra gaps= 8 total=2416 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1673101209.pdb -s /var/tmp/to_scwrl_1673101209.seq -o /var/tmp/from_scwrl_1673101209.pdb > /var/tmp/scwrl_1673101209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1673101209.pdb Number of alignments=248 # command:# Prefix for input files set to 1e96B/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-fssp-global-adpstyle5.a2m # 1e96B read from 1e96B-T0287-fssp-global-adpstyle5.a2m # found chain 1e96B in template set T0287 43 :QIKTMHDFFKQM 1e96B 21 :DWKGALDAFSAV T0287 56 :TNKGA 1e96B 34 :DPHSR T0287 67 :NYMKDY 1e96B 39 :ICFNIG T0287 95 :TMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQ 1e96B 57 :EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG T0287 142 :IELYGTNLPLLKLFVMTDEEV 1e96B 109 :YKILGLQFKLFACEVLYNIAF T0287 164 :FYANLKTIEQYNDYVRDLL 1e96B 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKFDLEKYMKEKGVQN 1e96B 152 :SEPRHSKIDKAMECVW Number of specific fragments extracted= 7 number of extra gaps= 0 total=2423 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_904427743.pdb -s /var/tmp/to_scwrl_904427743.seq -o /var/tmp/from_scwrl_904427743.pdb > /var/tmp/scwrl_904427743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_904427743.pdb Number of alignments=249 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-fssp-local-adpstyle5.a2m # 1e96B read from 1e96B-T0287-fssp-local-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 114 :DRSILGIFLPFFSKPIMFKMSIR 1e96B 108 :DYKILGLQFKLFACEVLYNIAFM T0287 137 :EMDSQIE 1e96B 132 :AKKEEWK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2425 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_245234068.pdb -s /var/tmp/to_scwrl_245234068.seq -o /var/tmp/from_scwrl_245234068.pdb > /var/tmp/scwrl_245234068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_245234068.pdb Number of alignments=250 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-t2k-global-adpstyle1.a2m # 1e96B read from 1e96B-T0287-t2k-global-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S140 because last residue in template chain is (1e96B)N186 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESL 1e96B 4 :VEAISLWNEGVLAADKKDWKGALDAF T0287 45 :KTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1e96B 30 :SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 84 :FKKVYRLLESE 1e96B 94 :LKEALIQLRGN T0287 95 :TMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1e96B 141 :EEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2429 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1484349131.pdb -s /var/tmp/to_scwrl_1484349131.seq -o /var/tmp/from_scwrl_1484349131.pdb > /var/tmp/scwrl_1484349131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1484349131.pdb Number of alignments=251 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-t2k-global-adpstyle5.a2m # 1e96B read from 1e96B-T0287-t2k-global-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S140 because last residue in template chain is (1e96B)N186 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESL 1e96B 4 :VEAISLWNEGVLAADKKDWKGALDAF T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 1e96B 30 :SAVQDPHSRICFNIGCMYTILKNM T0287 130 :MFKMSIREMD 1e96B 176 :VIPVGKLFRP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2432 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_424322457.pdb -s /var/tmp/to_scwrl_424322457.seq -o /var/tmp/from_scwrl_424322457.pdb > /var/tmp/scwrl_424322457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_424322457.pdb Number of alignments=252 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-t2k-local-adpstyle1.a2m # 1e96B read from 1e96B-T0287-t2k-local-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S140 because last residue in template chain is (1e96B)N186 T0287 98 :LLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1e96B 144 :LALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=2433 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1033040275.pdb -s /var/tmp/to_scwrl_1033040275.seq -o /var/tmp/from_scwrl_1033040275.pdb > /var/tmp/scwrl_1033040275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033040275.pdb Number of alignments=253 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-t2k-local-adpstyle5.a2m # 1e96B read from 1e96B-T0287-t2k-local-adpstyle5.a2m # found chain 1e96B in template set T0287 97 :ELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSI 1e96B 143 :QLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2434 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1486500080.pdb -s /var/tmp/to_scwrl_1486500080.seq -o /var/tmp/from_scwrl_1486500080.pdb > /var/tmp/scwrl_1486500080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1486500080.pdb Number of alignments=254 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-simplesw-adpstyle1.a2m # 1e96B read from T0287-1e96B-simplesw-adpstyle1.a2m # found chain 1e96B in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2435 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1122921375.pdb -s /var/tmp/to_scwrl_1122921375.seq -o /var/tmp/from_scwrl_1122921375.pdb > /var/tmp/scwrl_1122921375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1122921375.pdb Number of alignments=255 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-simplesw-adpstyle5.a2m # 1e96B read from T0287-1e96B-simplesw-adpstyle5.a2m # found chain 1e96B in template set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1e96B 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=2436 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_302245836.pdb -s /var/tmp/to_scwrl_302245836.seq -o /var/tmp/from_scwrl_302245836.pdb > /var/tmp/scwrl_302245836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_302245836.pdb Number of alignments=256 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-global-adpstyle1.a2m # 1e96B read from T0287-1e96B-t04-global-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 22 :LIE 1e96B 3 :LVE T0287 25 :SLQENELLNTDEK 1e96B 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1e96B 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 7 number of extra gaps= 1 total=2443 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1089425565.pdb -s /var/tmp/to_scwrl_1089425565.seq -o /var/tmp/from_scwrl_1089425565.pdb > /var/tmp/scwrl_1089425565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1089425565.pdb Number of alignments=257 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-global-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-global-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 3 :NNM 1e96B 3 :LVE T0287 23 :IESLQENELLNTDEK 1e96B 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1e96B 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=2449 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1184086559.pdb -s /var/tmp/to_scwrl_1184086559.seq -o /var/tmp/from_scwrl_1184086559.pdb > /var/tmp/scwrl_1184086559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184086559.pdb Number of alignments=258 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NNMR 1e96B 3 :LVEA T0287 7 :KLFS 1e96B 8 :SLWN T0287 11 :MIADSKD 1e96B 15 :LAADKKD T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1e96B 22 :WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 85 :KKVYRLLESETMELLHAIAEN 1e96B 84 :TEKYDLAIKDLKEALIQLRGN T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 164 :FYANLKTIEQYNDYVRDLL 1e96B 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKFD 1e96B 150 :MKSE T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 10 number of extra gaps= 1 total=2459 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1503356542.pdb -s /var/tmp/to_scwrl_1503356542.seq -o /var/tmp/from_scwrl_1503356542.pdb > /var/tmp/scwrl_1503356542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503356542.pdb Number of alignments=259 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NN 1e96B 3 :LV T0287 5 :MRKLFS 1e96B 6 :AISLWN T0287 11 :MIADSKDK 1e96B 15 :LAADKKDW T0287 20 :EKLIESLQEN 1e96B 23 :KGALDAFSAV T0287 34 :TDEKKKII 1e96B 33 :QDPHSRIC T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKD 1e96B 41 :FNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=2471 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1585215554.pdb -s /var/tmp/to_scwrl_1585215554.seq -o /var/tmp/from_scwrl_1585215554.pdb > /var/tmp/scwrl_1585215554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1585215554.pdb Number of alignments=260 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-local-adpstyle1.a2m # 1e96B read from T0287-1e96B-t04-local-adpstyle1.a2m # found chain 1e96B in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2472 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_244732723.pdb -s /var/tmp/to_scwrl_244732723.seq -o /var/tmp/from_scwrl_244732723.pdb > /var/tmp/scwrl_244732723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_244732723.pdb Number of alignments=261 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-local-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-local-adpstyle5.a2m # found chain 1e96B in template set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1e96B 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2473 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2127203599.pdb -s /var/tmp/to_scwrl_2127203599.seq -o /var/tmp/from_scwrl_2127203599.pdb > /var/tmp/scwrl_2127203599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2127203599.pdb Number of alignments=262 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQI 1e96B 133 :KKEEWKKAEEQLALATSMKSEPRHSKIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=2474 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1529910112.pdb -s /var/tmp/to_scwrl_1529910112.seq -o /var/tmp/from_scwrl_1529910112.pdb > /var/tmp/scwrl_1529910112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1529910112.pdb Number of alignments=263 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 18 :KKEKLIESLQE 1e96B 5 :EAISLWNEGVL T0287 31 :LLNTDEKKKIIDQIKTMHD 1e96B 16 :AADKKDWKGALDAFSAVQD T0287 50 :FFKQMHTNKGALDKVLRNYMKD 1e96B 45 :CMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQN 1e96B 159 :IDKAMECVWKQK Number of specific fragments extracted= 9 number of extra gaps= 1 total=2483 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1551441831.pdb -s /var/tmp/to_scwrl_1551441831.seq -o /var/tmp/from_scwrl_1551441831.pdb > /var/tmp/scwrl_1551441831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1551441831.pdb Number of alignments=264 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-global-adpstyle1.a2m # 1e96B read from T0287-1e96B-t06-global-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 22 :LIE 1e96B 3 :LVE T0287 25 :SLQENELLNTDEK 1e96B 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1e96B 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 7 number of extra gaps= 1 total=2490 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1100209380.pdb -s /var/tmp/to_scwrl_1100209380.seq -o /var/tmp/from_scwrl_1100209380.pdb > /var/tmp/scwrl_1100209380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100209380.pdb Number of alignments=265 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-global-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-global-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 3 :NNM 1e96B 3 :LVE T0287 23 :IESLQENELLNTDEK 1e96B 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1e96B 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=2496 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1443713528.pdb -s /var/tmp/to_scwrl_1443713528.seq -o /var/tmp/from_scwrl_1443713528.pdb > /var/tmp/scwrl_1443713528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1443713528.pdb Number of alignments=266 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NNMR 1e96B 3 :LVEA T0287 7 :KLFS 1e96B 8 :SLWN T0287 11 :MIADSKD 1e96B 15 :LAADKKD T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1e96B 22 :WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 85 :KKVYRLLESETMELLHAIAEN 1e96B 84 :TEKYDLAIKDLKEALIQLRGN T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 164 :FYANLKTIEQYNDYVRDLL 1e96B 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKFD 1e96B 150 :MKSE T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 10 number of extra gaps= 1 total=2506 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1048748144.pdb -s /var/tmp/to_scwrl_1048748144.seq -o /var/tmp/from_scwrl_1048748144.pdb > /var/tmp/scwrl_1048748144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1048748144.pdb Number of alignments=267 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NN 1e96B 3 :LV T0287 5 :MRKLFS 1e96B 6 :AISLWN T0287 11 :MIADSKDK 1e96B 15 :LAADKKDW T0287 20 :EKLIESLQEN 1e96B 23 :KGALDAFSAV T0287 34 :TDEKKKII 1e96B 33 :QDPHSRIC T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKD 1e96B 41 :FNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=2518 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_582920851.pdb -s /var/tmp/to_scwrl_582920851.seq -o /var/tmp/from_scwrl_582920851.pdb > /var/tmp/scwrl_582920851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_582920851.pdb Number of alignments=268 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-local-adpstyle1.a2m # 1e96B read from T0287-1e96B-t06-local-adpstyle1.a2m # found chain 1e96B in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2519 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_367589931.pdb -s /var/tmp/to_scwrl_367589931.seq -o /var/tmp/from_scwrl_367589931.pdb > /var/tmp/scwrl_367589931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367589931.pdb Number of alignments=269 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-local-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-local-adpstyle5.a2m # found chain 1e96B in template set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1e96B 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2520 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1513417230.pdb -s /var/tmp/to_scwrl_1513417230.seq -o /var/tmp/from_scwrl_1513417230.pdb > /var/tmp/scwrl_1513417230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1513417230.pdb Number of alignments=270 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQI 1e96B 133 :KKEEWKKAEEQLALATSMKSEPRHSKIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=2521 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2044552039.pdb -s /var/tmp/to_scwrl_2044552039.seq -o /var/tmp/from_scwrl_2044552039.pdb > /var/tmp/scwrl_2044552039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2044552039.pdb Number of alignments=271 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 18 :KKEKLIESLQE 1e96B 5 :EAISLWNEGVL T0287 31 :LLNTDEKKKIIDQIKTMHD 1e96B 16 :AADKKDWKGALDAFSAVQD T0287 50 :FFKQMHTNKGALDKVLRNYMKD 1e96B 45 :CMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQN 1e96B 159 :IDKAMECVWKQK Number of specific fragments extracted= 9 number of extra gaps= 1 total=2530 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1642445979.pdb -s /var/tmp/to_scwrl_1642445979.seq -o /var/tmp/from_scwrl_1642445979.pdb > /var/tmp/scwrl_1642445979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642445979.pdb Number of alignments=272 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-global-adpstyle1.a2m # 1e96B read from T0287-1e96B-t2k-global-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 22 :LIE 1e96B 3 :LVE T0287 25 :SLQENELLNTDEK 1e96B 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1e96B 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 7 number of extra gaps= 1 total=2537 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1226984326.pdb -s /var/tmp/to_scwrl_1226984326.seq -o /var/tmp/from_scwrl_1226984326.pdb > /var/tmp/scwrl_1226984326.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1226984326.pdb Number of alignments=273 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-global-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-global-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 3 :NNM 1e96B 3 :LVE T0287 23 :IESLQENELLNTDEK 1e96B 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1e96B 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=2543 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1268808665.pdb -s /var/tmp/to_scwrl_1268808665.seq -o /var/tmp/from_scwrl_1268808665.pdb > /var/tmp/scwrl_1268808665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268808665.pdb Number of alignments=274 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NNMR 1e96B 3 :LVEA T0287 7 :KLFS 1e96B 8 :SLWN T0287 11 :MIADSKDKKEKL 1e96B 15 :LAADKKDWKGAL T0287 24 :ESLQ 1e96B 27 :DAFS T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1e96B 31 :AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIKSIGVDKFKKVYRLL 1e96B 75 :FQRGMLYYQTEKYDLAIKDL T0287 99 :LHAIAENPNF 1e96B 95 :KEALIQLRGN T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFFSKPIM 1e96B 108 :DYKILGLQFKLFACEVL T0287 162 :VNFYANLKTIEQYNDYVRDLL 1e96B 128 :AFMYAKKEEWKKAEEQLALAT T0287 183 :MKF 1e96B 150 :MKS T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=2555 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_543732313.pdb -s /var/tmp/to_scwrl_543732313.seq -o /var/tmp/from_scwrl_543732313.pdb > /var/tmp/scwrl_543732313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_543732313.pdb Number of alignments=275 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NN 1e96B 3 :LV T0287 5 :MRKLFS 1e96B 6 :AISLWN T0287 11 :MIADSKDK 1e96B 15 :LAADKKDW T0287 20 :EKLIESLQEN 1e96B 23 :KGALDAFSAV T0287 34 :TDEKKKII 1e96B 33 :QDPHSRIC T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKD 1e96B 41 :FNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=2567 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_240139806.pdb -s /var/tmp/to_scwrl_240139806.seq -o /var/tmp/from_scwrl_240139806.pdb > /var/tmp/scwrl_240139806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_240139806.pdb Number of alignments=276 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-local-adpstyle1.a2m # 1e96B read from T0287-1e96B-t2k-local-adpstyle1.a2m # found chain 1e96B in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2568 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1611939490.pdb -s /var/tmp/to_scwrl_1611939490.seq -o /var/tmp/from_scwrl_1611939490.pdb > /var/tmp/scwrl_1611939490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1611939490.pdb Number of alignments=277 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-local-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-local-adpstyle5.a2m # found chain 1e96B in template set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1e96B 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2569 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_894124394.pdb -s /var/tmp/to_scwrl_894124394.seq -o /var/tmp/from_scwrl_894124394.pdb > /var/tmp/scwrl_894124394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_894124394.pdb Number of alignments=278 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 13 :ADSKDK 1e96B 17 :ADKKDW T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 84 :FKKVYRLLESETMELL 1e96B 75 :FQRGMLYYQTEKYDLA T0287 100 :HAIAENPNF 1e96B 96 :EALIQLRGN T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF Number of specific fragments extracted= 6 number of extra gaps= 1 total=2575 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1913241015.pdb -s /var/tmp/to_scwrl_1913241015.seq -o /var/tmp/from_scwrl_1913241015.pdb > /var/tmp/scwrl_1913241015.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1913241015.pdb Number of alignments=279 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 18 :KKEKLIESLQE 1e96B 5 :EAISLWNEGVL T0287 31 :LLNTDEKKKIIDQIKTMHD 1e96B 16 :AADKKDWKGALDAFSAVQD T0287 50 :FFKQMHTNKGALDKVLRNYMKD 1e96B 45 :CMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQN 1e96B 159 :IDKAMECVWKQK Number of specific fragments extracted= 9 number of extra gaps= 1 total=2584 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_368883587.pdb -s /var/tmp/to_scwrl_368883587.seq -o /var/tmp/from_scwrl_368883587.pdb > /var/tmp/scwrl_368883587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368883587.pdb Number of alignments=280 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-muscle.a2m.gz # 1e96B read from T0287-1e96B-t2k-muscle.a2m.gz # found chain 1e96B in template set Warning: unaligning (T0287)D17 because first residue in template chain is (1e96B)S2 T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1e96B 3 :LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD T0287 106 :PNFLFSKFDRSILGIFLPFFSKPI 1e96B 68 :KHLAVAYFQRGMLYYQTEKYDLAI T0287 130 :MFKMSIREMDSQ 1e96B 93 :DLKEALIQLRGN T0287 142 :IELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e96B 121 :CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2588 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1139358462.pdb -s /var/tmp/to_scwrl_1139358462.seq -o /var/tmp/from_scwrl_1139358462.pdb > /var/tmp/scwrl_1139358462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1139358462.pdb Number of alignments=281 # command:# Prefix for input files set to 1e9gA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t04-global-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t04-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)E24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)T56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)N57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 Warning: unaligning (T0287)G195 because last residue in template chain is (1e9gA)G284 T0287 3 :NNMRKLFSMIAD 1e9gA 37 :DKENNIFNMVVE T0287 15 :S 1e9gA 50 :P T0287 18 :KKEKL 1e9gA 53 :TNAKL T0287 25 :SLQENELLNTDEKKKIIDQIKTMHDFFKQMH 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFPHHGYI T0287 58 :KGALDKVL 1e9gA 93 :YGAFPQTW T0287 66 :RNYMKDYRAVIKSIGV 1e9gA 127 :TIAYTGQVKQVKALGI T0287 82 :DKFKKVYRLL 1e9gA 147 :DEGETDWKVI T0287 92 :ESETMELLHAIAENPN 1e9gA 161 :NDPLAPKLNDIEDVEK T0287 108 :F 1e9gA 189 :F T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 1e9gA 193 :KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIA T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEK 1e9gA 240 :IDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFIS Number of specific fragments extracted= 11 number of extra gaps= 4 total=2599 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1250106499.pdb -s /var/tmp/to_scwrl_1250106499.seq -o /var/tmp/from_scwrl_1250106499.pdb > /var/tmp/scwrl_1250106499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1250106499.pdb Number of alignments=282 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t04-global-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t04-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 Warning: unaligning (T0287)G195 because last residue in template chain is (1e9gA)G284 T0287 2 :SNNMRKL 1e9gA 22 :DGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESL 1e9gA 37 :DKENNIFNMV T0287 29 :NELL 1e9gA 47 :VEIP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRN 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFP T0287 68 :YM 1e9gA 89 :YI T0287 72 :YRAVIKSIGVDKFKKVY 1e9gA 93 :YGAFPQTWEDPNVSHPE T0287 89 :RLLES 1e9gA 112 :AVGDN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLF 1e9gA 125 :GETIAYTG T0287 111 :SKFDRSILGIFLP 1e9gA 149 :GETDWKVIAIDIN T0287 127 :KPIM 1e9gA 162 :DPLA T0287 131 :FKMSIREMDSQ 1e9gA 167 :KLNDIEDVEKY T0287 142 :I 1e9gA 189 :F T0287 146 :GTN 1e9gA 193 :KIP T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1e9gA 197 :GKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIA T0287 184 :KFDLEKYMKEK 1e9gA 273 :DKSIDKWFFIS Number of specific fragments extracted= 18 number of extra gaps= 8 total=2617 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_793206044.pdb -s /var/tmp/to_scwrl_793206044.seq -o /var/tmp/from_scwrl_793206044.pdb > /var/tmp/scwrl_793206044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_793206044.pdb Number of alignments=283 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t04-local-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t04-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2618 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_24915090.pdb -s /var/tmp/to_scwrl_24915090.seq -o /var/tmp/from_scwrl_24915090.pdb > /var/tmp/scwrl_24915090.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_24915090.pdb Number of alignments=284 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t04-local-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t04-local-adpstyle5.a2m # found chain 1e9gA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2618 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t06-global-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t06-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)E24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)S25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)T56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)N57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLI 1e9gA 37 :DKENNIF T0287 26 :LQENEL 1e9gA 60 :TKEETL T0287 32 :LNTDEKKKIIDQIKTMHDFFKQM 1e9gA 68 :IIQDTKKGKLRFVRNCFPHHGYI T0287 58 :KGALDKVLRN 1e9gA 93 :YGAFPQTWED T0287 68 :YMKDYRAVIKSIGV 1e9gA 129 :AYTGQVKQVKALGI T0287 82 :DKFKKVYRLL 1e9gA 147 :DEGETDWKVI T0287 92 :ESETMELLHAIAENPNF 1e9gA 161 :NDPLAPKLNDIEDVEKY T0287 111 :SKFDRSILGIFLP 1e9gA 193 :KIPDGKPENQFAF T0287 124 :FFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSDSKGIDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFISG Number of specific fragments extracted= 11 number of extra gaps= 3 total=2629 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_589122933.pdb -s /var/tmp/to_scwrl_589122933.seq -o /var/tmp/from_scwrl_589122933.pdb > /var/tmp/scwrl_589122933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_589122933.pdb Number of alignments=285 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t06-global-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t06-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)E24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)S25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)T56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)N57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)F84 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLI 1e9gA 37 :DKENNIF T0287 26 :LQENEL 1e9gA 60 :TKEETL T0287 32 :LNTDEKKKIIDQIKTMHDFF 1e9gA 68 :IIQDTKKGKLRFVRNCFPHH T0287 53 :QMH 1e9gA 88 :GYI T0287 58 :KGALDKVLRN 1e9gA 93 :YGAFPQTWED T0287 68 :YMKDYRAVIKSIGVDK 1e9gA 129 :AYTGQVKQVKALGIMA T0287 85 :KKVYR 1e9gA 150 :ETDWK T0287 90 :LLESETMELLHAIAENPNF 1e9gA 159 :DINDPLAPKLNDIEDVEKY T0287 111 :SKFDRSILGIFL 1e9gA 193 :KIPDGKPENQFA T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 208 :EAKNKKYALDIIKETHDSWKQLIAGKSSDSKGIDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFISG Number of specific fragments extracted= 12 number of extra gaps= 4 total=2641 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1916127419.pdb -s /var/tmp/to_scwrl_1916127419.seq -o /var/tmp/from_scwrl_1916127419.pdb > /var/tmp/scwrl_1916127419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916127419.pdb Number of alignments=286 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t06-local-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t06-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 164 :FYANLKTIEQYNDY 1e9gA 164 :LAPKLNDIEDVEKY T0287 178 :VRDLLMKF 1e9gA 181 :LLRATNEW Number of specific fragments extracted= 2 number of extra gaps= 0 total=2643 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_327160926.pdb -s /var/tmp/to_scwrl_327160926.seq -o /var/tmp/from_scwrl_327160926.pdb > /var/tmp/scwrl_327160926.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_327160926.pdb Number of alignments=287 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t06-local-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t06-local-adpstyle5.a2m # found chain 1e9gA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2643 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t2k-global-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t2k-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQENE 1e9gA 37 :DKENNIFNMVVEIP T0287 33 :N 1e9gA 53 :T T0287 36 :EKKK 1e9gA 54 :NAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRN 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFP T0287 68 :YM 1e9gA 89 :YI T0287 72 :YRAVIKSIGV 1e9gA 93 :YGAFPQTWED T0287 82 :DK 1e9gA 115 :DN T0287 84 :FKKVYRLLESETMELLHAIAENPNFL 1e9gA 153 :WKVIAIDINDPLAPKLNDIEDVEKYF T0287 111 :SKFDRS 1e9gA 193 :KIPDGK T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 202 :QFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSKGIDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFISG Number of specific fragments extracted= 12 number of extra gaps= 5 total=2655 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1678548498.pdb -s /var/tmp/to_scwrl_1678548498.seq -o /var/tmp/from_scwrl_1678548498.pdb > /var/tmp/scwrl_1678548498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1678548498.pdb Number of alignments=288 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t2k-global-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t2k-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)K21 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)K21 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 T0287 1 :MSNNMRKLFSMIA 1e9gA 7 :IGAKNTLEYKVYI T0287 19 :KEKLIES 1e9gA 22 :DGKPVSA T0287 28 :ENEL 1e9gA 31 :DIPL T0287 34 :TD 1e9gA 37 :DK T0287 36 :EKKK 1e9gA 54 :NAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFPH T0287 69 :M 1e9gA 90 :I T0287 72 :YRAVIKSIGV 1e9gA 93 :YGAFPQTWED T0287 82 :D 1e9gA 115 :D T0287 83 :KFKKVYRLL 1e9gA 127 :TIAYTGQVK T0287 92 :ESETMELLHAIAENPNFLFSKFDRSI 1e9gA 148 :EGETDWKVIAIDINDPLAPKLNDIED T0287 118 :LGIFLPFF 1e9gA 182 :LRATNEWF T0287 127 :KPIMFKMSIREMDSQIELYG 1e9gA 208 :EAKNKKYALDIIKETHDSWK T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 232 :GKSSDSKGIDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFISG Number of specific fragments extracted= 14 number of extra gaps= 6 total=2669 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_952730333.pdb -s /var/tmp/to_scwrl_952730333.seq -o /var/tmp/from_scwrl_952730333.pdb > /var/tmp/scwrl_952730333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_952730333.pdb Number of alignments=289 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t2k-local-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t2k-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 41 :IDQIKTMHDFFKQMHTNK 1e9gA 216 :LDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2670 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t2k-local-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t2k-local-adpstyle5.a2m # found chain 1e9gA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2670 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wgjA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1wgjA-T0287-fssp-global-adpstyle5.a2m # 1e9gA read from 1wgjA-T0287-fssp-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNM 1e9gA 1 :TYTTR T0287 6 :RKL 1e9gA 26 :VSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQE 1e9gA 37 :DKENNIFNMVVE T0287 31 :LL 1e9gA 49 :IP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFF 1e9gA 60 :TKEETLNPII T0287 54 :MHTNKGALDKVL 1e9gA 70 :QDTKKGKLRFVR T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKFKK 1e9gA 93 :YGAFPQTWEDPNVSH T0287 87 :VYRLLES 1e9gA 110 :TKAVGDN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLFS 1e9gA 125 :GETIAYTGQ T0287 112 :KFDRSILGIFLPF 1e9gA 150 :ETDWKVIAIDIND T0287 125 :FSKPIMFKMSIREMDSQI 1e9gA 172 :EDVEKYFPGLLRATNEWF T0287 146 :GTNLP 1e9gA 193 :KIPDG T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKF 1e9gA 199 :PENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK T0287 186 :DLEKYMKEKGVQNA 1e9gA 269 :DAPIDKSIDKWFFI Number of specific fragments extracted= 18 number of extra gaps= 8 total=2688 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1830517468.pdb -s /var/tmp/to_scwrl_1830517468.seq -o /var/tmp/from_scwrl_1830517468.pdb > /var/tmp/scwrl_1830517468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1830517468.pdb Number of alignments=290 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wgjA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1wgjA-T0287-fssp-local-adpstyle5.a2m # 1e9gA read from 1wgjA-T0287-fssp-local-adpstyle5.a2m # found chain 1e9gA in training set T0287 22 :LIESLQENELL 1e9gA 194 :IPDGKPENQFA T0287 33 :NTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1e9gA 208 :EAKNKKYALDIIKETHDSWKQLIAGKSSDSK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2690 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1116280406.pdb -s /var/tmp/to_scwrl_1116280406.seq -o /var/tmp/from_scwrl_1116280406.pdb > /var/tmp/scwrl_1116280406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1116280406.pdb Number of alignments=291 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-simplesw-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-simplesw-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2691 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1197463055.pdb -s /var/tmp/to_scwrl_1197463055.seq -o /var/tmp/from_scwrl_1197463055.pdb > /var/tmp/scwrl_1197463055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197463055.pdb Number of alignments=292 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-simplesw-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-simplesw-adpstyle5.a2m # found chain 1e9gA in training set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGAL 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=2692 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1810237420.pdb -s /var/tmp/to_scwrl_1810237420.seq -o /var/tmp/from_scwrl_1810237420.pdb > /var/tmp/scwrl_1810237420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1810237420.pdb Number of alignments=293 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-global-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t04-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)L22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)Q43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)L99 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 2 :SNNMRKLFSMIA 1e9gA 39 :ENNIFNMVVEIP T0287 16 :KDKKE 1e9gA 53 :TNAKL T0287 23 :IESLQENELLNTDEKKKI 1e9gA 60 :TKEETLNPIIQDTKKGKL T0287 41 :I 1e9gA 90 :I T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1e9gA 93 :YGAFPQTWEDPNVSHPETKAVGDN T0287 70 :KDYR 1e9gA 119 :IDVL T0287 76 :IKSIGVDKFKKVYRLL 1e9gA 125 :GETIAYTGQVKQVKAL T0287 94 :ETME 1e9gA 141 :GIMA T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQI 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWF T0287 146 :G 1e9gA 193 :K T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 195 :PDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAG T0287 189 :KYMKEKGVQNA 1e9gA 233 :KSSDSKGIDLT Number of specific fragments extracted= 13 number of extra gaps= 7 total=2705 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_498706872.pdb -s /var/tmp/to_scwrl_498706872.seq -o /var/tmp/from_scwrl_498706872.pdb > /var/tmp/scwrl_498706872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498706872.pdb Number of alignments=294 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-global-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)K21 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)K21 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKLFSMIADSK 1e9gA 1 :TYTTRQIGAKNTLEYK T0287 19 :KEKLIES 1e9gA 22 :DGKPVSA T0287 29 :NELL 1e9gA 31 :DIPL T0287 35 :DEKKKIIDQIKTMH 1e9gA 37 :DKENNIFNMVVEIP T0287 51 :F 1e9gA 53 :T T0287 52 :KQ 1e9gA 56 :KL T0287 54 :MHTNKGALDKVL 1e9gA 70 :QDTKKGKLRFVR T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKF 1e9gA 93 :YGAFPQTWEDPNV T0287 95 :TMELLHAIAEN 1e9gA 106 :SHPETKAVGDN T0287 108 :FLFS 1e9gA 119 :IDVL T0287 114 :DRSIL 1e9gA 125 :GETIA T0287 119 :GIFLPFFSKPIMF 1e9gA 132 :GQVKQVKALGIMA T0287 134 :SIREMDSQIELYGTNLPLL 1e9gA 147 :DEGETDWKVIAIDINDPLA T0287 153 :KLFVMTDEEVNFYANLKTIEQYN 1e9gA 167 :KLNDIEDVEKYFPGLLRATNEWF T0287 189 :KYMKEK 1e9gA 193 :KIPDGK Number of specific fragments extracted= 16 number of extra gaps= 9 total=2721 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_601421240.pdb -s /var/tmp/to_scwrl_601421240.seq -o /var/tmp/from_scwrl_601421240.pdb > /var/tmp/scwrl_601421240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_601421240.pdb Number of alignments=295 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)I117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 10 :SM 1e9gA 33 :PL T0287 14 :DSKD 1e9gA 37 :DKEN T0287 19 :KEK 1e9gA 74 :KGK T0287 106 :PNFLFSKFDR 1e9gA 77 :LRFVRNCFPH T0287 118 :LGIFLPFFSKPIM 1e9gA 93 :YGAFPQTWEDPNV T0287 134 :SIREM 1e9gA 106 :SHPET T0287 143 :ELYGTN 1e9gA 111 :KAVGDN T0287 151 :L 1e9gA 119 :I T0287 152 :LKLFV 1e9gA 140 :LGIMA T0287 159 :DEEV 1e9gA 147 :DEGE T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1e9gA 163 :PLAPKLNDIEDVEKYFPGLLRATN T0287 187 :L 1e9gA 189 :F T0287 191 :MKEKGVQ 1e9gA 193 :KIPDGKP Number of specific fragments extracted= 14 number of extra gaps= 5 total=2735 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_762963155.pdb -s /var/tmp/to_scwrl_762963155.seq -o /var/tmp/from_scwrl_762963155.pdb > /var/tmp/scwrl_762963155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762963155.pdb Number of alignments=296 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 14 :DSKDK 1e9gA 37 :DKENN T0287 56 :TN 1e9gA 53 :TN T0287 58 :KG 1e9gA 74 :KG T0287 79 :IGVDKF 1e9gA 84 :FPHHGY T0287 105 :NPNFLFSKF 1e9gA 102 :DPNVSHPET T0287 114 :DR 1e9gA 115 :DN T0287 118 :LGIF 1e9gA 119 :IDVL T0287 124 :FFSKP 1e9gA 125 :GETIA T0287 130 :MFKMSIREM 1e9gA 134 :VKQVKALGI T0287 142 :IE 1e9gA 143 :MA T0287 146 :GTNLPLLKLFVM 1e9gA 147 :DEGETDWKVIAI T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 159 :DINDPLAPKLNDIEDVEKYFPGLLRA T0287 187 :LEKYM 1e9gA 185 :TNEWF T0287 195 :GVQNA 1e9gA 193 :KIPDG Number of specific fragments extracted= 15 number of extra gaps= 5 total=2750 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1942420400.pdb -s /var/tmp/to_scwrl_1942420400.seq -o /var/tmp/from_scwrl_1942420400.pdb > /var/tmp/scwrl_1942420400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1942420400.pdb Number of alignments=297 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-local-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t04-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2751 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1650169384.pdb -s /var/tmp/to_scwrl_1650169384.seq -o /var/tmp/from_scwrl_1650169384.pdb > /var/tmp/scwrl_1650169384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650169384.pdb Number of alignments=298 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-local-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-local-adpstyle5.a2m # found chain 1e9gA in training set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALD 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=2752 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1345884005.pdb -s /var/tmp/to_scwrl_1345884005.seq -o /var/tmp/from_scwrl_1345884005.pdb > /var/tmp/scwrl_1345884005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1345884005.pdb Number of alignments=299 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2753 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_162526684.pdb -s /var/tmp/to_scwrl_162526684.seq -o /var/tmp/from_scwrl_162526684.pdb > /var/tmp/scwrl_162526684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_162526684.pdb Number of alignments=300 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2754 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1016102968.pdb -s /var/tmp/to_scwrl_1016102968.seq -o /var/tmp/from_scwrl_1016102968.pdb > /var/tmp/scwrl_1016102968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016102968.pdb Number of alignments=301 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-global-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t06-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)L22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)Q43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)L99 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 2 :SNNMRKLFSMIA 1e9gA 39 :ENNIFNMVVEIP T0287 16 :KDKKE 1e9gA 53 :TNAKL T0287 23 :IESLQENELLNTDEKKKI 1e9gA 60 :TKEETLNPIIQDTKKGKL T0287 41 :I 1e9gA 90 :I T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1e9gA 93 :YGAFPQTWEDPNVSHPETKAVGDN T0287 70 :KDYR 1e9gA 119 :IDVL T0287 76 :IKSIGVDKFKKVYRLL 1e9gA 125 :GETIAYTGQVKQVKAL T0287 94 :ETME 1e9gA 141 :GIMA T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQI 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWF T0287 146 :G 1e9gA 193 :K T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 195 :PDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAG T0287 189 :KYMKEKGVQNA 1e9gA 233 :KSSDSKGIDLT Number of specific fragments extracted= 13 number of extra gaps= 7 total=2767 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1242952397.pdb -s /var/tmp/to_scwrl_1242952397.seq -o /var/tmp/from_scwrl_1242952397.pdb > /var/tmp/scwrl_1242952397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1242952397.pdb Number of alignments=302 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-global-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)K21 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)K21 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKLFSMIADSK 1e9gA 1 :TYTTRQIGAKNTLEYK T0287 19 :KEKLIES 1e9gA 22 :DGKPVSA T0287 29 :NELL 1e9gA 31 :DIPL T0287 35 :DEKKKIIDQIKTMH 1e9gA 37 :DKENNIFNMVVEIP T0287 51 :F 1e9gA 53 :T T0287 52 :KQ 1e9gA 56 :KL T0287 54 :MHTNKGALDKVL 1e9gA 70 :QDTKKGKLRFVR T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKF 1e9gA 93 :YGAFPQTWEDPNV T0287 95 :TMELLHAIAEN 1e9gA 106 :SHPETKAVGDN T0287 108 :FLFS 1e9gA 119 :IDVL T0287 114 :DRSIL 1e9gA 125 :GETIA T0287 119 :GIFLPFFSKPIMF 1e9gA 132 :GQVKQVKALGIMA T0287 134 :SIREMDSQIELYGTNLPLL 1e9gA 147 :DEGETDWKVIAIDINDPLA T0287 153 :KLFVMTDEEVNFYANLKTIEQYN 1e9gA 167 :KLNDIEDVEKYFPGLLRATNEWF T0287 189 :KYMKEK 1e9gA 193 :KIPDGK Number of specific fragments extracted= 16 number of extra gaps= 9 total=2783 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1804972663.pdb -s /var/tmp/to_scwrl_1804972663.seq -o /var/tmp/from_scwrl_1804972663.pdb > /var/tmp/scwrl_1804972663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1804972663.pdb Number of alignments=303 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)I117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 10 :SM 1e9gA 33 :PL T0287 14 :DSKD 1e9gA 37 :DKEN T0287 19 :KEK 1e9gA 74 :KGK T0287 106 :PNFLFSKFDR 1e9gA 77 :LRFVRNCFPH T0287 118 :LGIFLPFFSKPIM 1e9gA 93 :YGAFPQTWEDPNV T0287 134 :SIREM 1e9gA 106 :SHPET T0287 143 :ELYGTN 1e9gA 111 :KAVGDN T0287 151 :L 1e9gA 119 :I T0287 152 :LKLFV 1e9gA 140 :LGIMA T0287 159 :DEEV 1e9gA 147 :DEGE T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1e9gA 163 :PLAPKLNDIEDVEKYFPGLLRATN T0287 187 :L 1e9gA 189 :F T0287 191 :MKEKGVQ 1e9gA 193 :KIPDGKP Number of specific fragments extracted= 14 number of extra gaps= 5 total=2797 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_95603647.pdb -s /var/tmp/to_scwrl_95603647.seq -o /var/tmp/from_scwrl_95603647.pdb > /var/tmp/scwrl_95603647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_95603647.pdb Number of alignments=304 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 14 :DSKDK 1e9gA 37 :DKENN T0287 56 :TN 1e9gA 53 :TN T0287 58 :KG 1e9gA 74 :KG T0287 79 :IGVDKF 1e9gA 84 :FPHHGY T0287 105 :NPNFLFSKF 1e9gA 102 :DPNVSHPET T0287 114 :DR 1e9gA 115 :DN T0287 118 :LGIF 1e9gA 119 :IDVL T0287 124 :FFSKP 1e9gA 125 :GETIA T0287 130 :MFKMSIREM 1e9gA 134 :VKQVKALGI T0287 142 :IE 1e9gA 143 :MA T0287 146 :GTNLPLLKLFVM 1e9gA 147 :DEGETDWKVIAI T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 159 :DINDPLAPKLNDIEDVEKYFPGLLRA T0287 187 :LEKYM 1e9gA 185 :TNEWF T0287 195 :GVQNA 1e9gA 193 :KIPDG Number of specific fragments extracted= 15 number of extra gaps= 5 total=2812 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_364277416.pdb -s /var/tmp/to_scwrl_364277416.seq -o /var/tmp/from_scwrl_364277416.pdb > /var/tmp/scwrl_364277416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364277416.pdb Number of alignments=305 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-local-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t06-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2813 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_201221330.pdb -s /var/tmp/to_scwrl_201221330.seq -o /var/tmp/from_scwrl_201221330.pdb > /var/tmp/scwrl_201221330.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_201221330.pdb Number of alignments=306 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-local-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-local-adpstyle5.a2m # found chain 1e9gA in training set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALD 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=2814 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_335743453.pdb -s /var/tmp/to_scwrl_335743453.seq -o /var/tmp/from_scwrl_335743453.pdb > /var/tmp/scwrl_335743453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_335743453.pdb Number of alignments=307 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2815 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1976216907.pdb -s /var/tmp/to_scwrl_1976216907.seq -o /var/tmp/from_scwrl_1976216907.pdb > /var/tmp/scwrl_1976216907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1976216907.pdb Number of alignments=308 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2816 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1095345723.pdb -s /var/tmp/to_scwrl_1095345723.seq -o /var/tmp/from_scwrl_1095345723.pdb > /var/tmp/scwrl_1095345723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1095345723.pdb Number of alignments=309 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-global-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t2k-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)L22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)Q43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)L99 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 2 :SNNMRKLFSMIA 1e9gA 39 :ENNIFNMVVEIP T0287 16 :KDKKE 1e9gA 53 :TNAKL T0287 23 :IESLQENELLNTDEKKKI 1e9gA 60 :TKEETLNPIIQDTKKGKL T0287 41 :I 1e9gA 90 :I T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1e9gA 93 :YGAFPQTWEDPNVSHPETKAVGDN T0287 70 :KDYR 1e9gA 119 :IDVL T0287 76 :IKSIGVDKFKKVYRLL 1e9gA 125 :GETIAYTGQVKQVKAL T0287 94 :ETME 1e9gA 141 :GIMA T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQI 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWF T0287 146 :G 1e9gA 193 :K T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 195 :PDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAG T0287 189 :KYMKEKGVQNA 1e9gA 233 :KSSDSKGIDLT Number of specific fragments extracted= 13 number of extra gaps= 7 total=2829 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_101500821.pdb -s /var/tmp/to_scwrl_101500821.seq -o /var/tmp/from_scwrl_101500821.pdb > /var/tmp/scwrl_101500821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101500821.pdb Number of alignments=310 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-global-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)K21 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)K21 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKLFSMIADSK 1e9gA 1 :TYTTRQIGAKNTLEYK T0287 19 :KEKLIES 1e9gA 22 :DGKPVSA T0287 29 :NELL 1e9gA 31 :DIPL T0287 35 :DEKKKIIDQIKTMH 1e9gA 37 :DKENNIFNMVVEIP T0287 51 :F 1e9gA 53 :T T0287 52 :KQ 1e9gA 56 :KL T0287 54 :MHTNKGALDKVL 1e9gA 70 :QDTKKGKLRFVR T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKF 1e9gA 93 :YGAFPQTWEDPNV T0287 95 :TMELLHAIAEN 1e9gA 106 :SHPETKAVGDN T0287 108 :FLFS 1e9gA 119 :IDVL T0287 114 :DRSIL 1e9gA 125 :GETIA T0287 119 :GIFLPFFSKPIMF 1e9gA 132 :GQVKQVKALGIMA T0287 134 :SIREMDSQIELYGTNLPLL 1e9gA 147 :DEGETDWKVIAIDINDPLA T0287 153 :KLFVMTDEEVNFYANLKTIEQYN 1e9gA 167 :KLNDIEDVEKYFPGLLRATNEWF T0287 189 :KYMKEK 1e9gA 193 :KIPDGK Number of specific fragments extracted= 16 number of extra gaps= 9 total=2845 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_197616847.pdb -s /var/tmp/to_scwrl_197616847.seq -o /var/tmp/from_scwrl_197616847.pdb > /var/tmp/scwrl_197616847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_197616847.pdb Number of alignments=311 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)I117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 11 :M 1e9gA 34 :L T0287 14 :DSKD 1e9gA 37 :DKEN T0287 56 :TNKG 1e9gA 72 :TKKG T0287 105 :NPNFLFSKFDRS 1e9gA 76 :KLRFVRNCFPHH T0287 118 :LGIFLPFFSKPIMFK 1e9gA 93 :YGAFPQTWEDPNVSH T0287 136 :R 1e9gA 108 :P T0287 141 :QIELYGTN 1e9gA 109 :ETKAVGDN T0287 151 :L 1e9gA 119 :I T0287 152 :LKLFV 1e9gA 140 :LGIMA T0287 159 :DEEV 1e9gA 147 :DEGE T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1e9gA 163 :PLAPKLNDIEDVEKYFPGLLRATN T0287 187 :L 1e9gA 189 :F T0287 191 :MKEKGVQ 1e9gA 193 :KIPDGKP Number of specific fragments extracted= 14 number of extra gaps= 5 total=2859 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_87220539.pdb -s /var/tmp/to_scwrl_87220539.seq -o /var/tmp/from_scwrl_87220539.pdb > /var/tmp/scwrl_87220539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87220539.pdb Number of alignments=312 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 14 :DSKDK 1e9gA 37 :DKENN T0287 56 :TN 1e9gA 53 :TN T0287 58 :KG 1e9gA 74 :KG T0287 79 :IGVDKF 1e9gA 84 :FPHHGY T0287 105 :NPNFLFSKF 1e9gA 102 :DPNVSHPET T0287 114 :DR 1e9gA 115 :DN T0287 118 :LGIF 1e9gA 119 :IDVL T0287 124 :FFSKP 1e9gA 125 :GETIA T0287 130 :MFKMSIREM 1e9gA 134 :VKQVKALGI T0287 142 :IE 1e9gA 143 :MA T0287 146 :GTNLPLLKLFVM 1e9gA 147 :DEGETDWKVIAI T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 159 :DINDPLAPKLNDIEDVEKYFPGLLRA T0287 187 :LEKYM 1e9gA 185 :TNEWF T0287 195 :GVQNA 1e9gA 193 :KIPDG Number of specific fragments extracted= 15 number of extra gaps= 5 total=2874 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1351607320.pdb -s /var/tmp/to_scwrl_1351607320.seq -o /var/tmp/from_scwrl_1351607320.pdb > /var/tmp/scwrl_1351607320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351607320.pdb Number of alignments=313 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-local-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t2k-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2875 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_990822891.pdb -s /var/tmp/to_scwrl_990822891.seq -o /var/tmp/from_scwrl_990822891.pdb > /var/tmp/scwrl_990822891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_990822891.pdb Number of alignments=314 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-local-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-local-adpstyle5.a2m # found chain 1e9gA in training set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALD 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=2876 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_112135630.pdb -s /var/tmp/to_scwrl_112135630.seq -o /var/tmp/from_scwrl_112135630.pdb > /var/tmp/scwrl_112135630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_112135630.pdb Number of alignments=315 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set T0287 36 :EKKKIIDQIKTMHDFFKQMHTNK 1e9gA 211 :NKKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2877 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1940730254.pdb -s /var/tmp/to_scwrl_1940730254.seq -o /var/tmp/from_scwrl_1940730254.pdb > /var/tmp/scwrl_1940730254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1940730254.pdb Number of alignments=316 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2878 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_759466663.pdb -s /var/tmp/to_scwrl_759466663.seq -o /var/tmp/from_scwrl_759466663.pdb > /var/tmp/scwrl_759466663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759466663.pdb Number of alignments=317 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-muscle.a2m.gz # 1e9gA read from T0287-1e9gA-t04-muscle.a2m.gz # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 2 :SNNMRKL 1e9gA 22 :DGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQ 1e9gA 37 :DKENNIFNMVV T0287 30 :ELL 1e9gA 48 :EIP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVL 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNC T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKFKKVYR 1e9gA 93 :YGAFPQTWEDPNVSHPET T0287 90 :LLES 1e9gA 113 :VGDN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLFSKFDRSILGIFL 1e9gA 125 :GETIAYTGQVKQVKALGIMA T0287 125 :FSKPIMFKMSIREMDSQIELYGTNLPLLKLF 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKY T0287 156 :VMTDEEVNFY 1e9gA 180 :GLLRATNEWF T0287 169 :KTIEQ 1e9gA 193 :KIPDG T0287 174 :YNDYVRDLLMK 1e9gA 211 :NKKYALDIIKE T0287 186 :DLEKYMKEKGVQNA 1e9gA 222 :THDSWKQLIAGKSS Number of specific fragments extracted= 17 number of extra gaps= 9 total=2895 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_439296556.pdb -s /var/tmp/to_scwrl_439296556.seq -o /var/tmp/from_scwrl_439296556.pdb > /var/tmp/scwrl_439296556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439296556.pdb Number of alignments=318 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-muscle.a2m.gz # 1e9gA read from T0287-1e9gA-t06-muscle.a2m.gz # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQ 1e9gA 37 :DKENNIFNMVV T0287 30 :ELL 1e9gA 48 :EIP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRN 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFP T0287 68 :YM 1e9gA 89 :YI T0287 72 :YRAVIKSIGVDKFKKVYRLL 1e9gA 93 :YGAFPQTWEDPNVSHPETKA T0287 92 :ES 1e9gA 115 :DN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLFSKFDRSILGIFL 1e9gA 125 :GETIAYTGQVKQVKALGIMA T0287 125 :FSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKYF T0287 157 :MTDEEVNFY 1e9gA 181 :LLRATNEWF T0287 169 :KTIEQ 1e9gA 193 :KIPDG T0287 174 :YNDYVRDL 1e9gA 209 :AKNKKYAL T0287 182 :LMKFDLEKYMKEKGVQNA 1e9gA 218 :IIKETHDSWKQLIAGKSS Number of specific fragments extracted= 16 number of extra gaps= 9 total=2911 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1471795105.pdb -s /var/tmp/to_scwrl_1471795105.seq -o /var/tmp/from_scwrl_1471795105.pdb > /var/tmp/scwrl_1471795105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1471795105.pdb Number of alignments=319 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-muscle.a2m.gz # 1e9gA read from T0287-1e9gA-t2k-muscle.a2m.gz # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQ 1e9gA 37 :DKENNIFNMVV T0287 30 :ELL 1e9gA 48 :EIP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVL 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNC T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKFKKVYRLL 1e9gA 93 :YGAFPQTWEDPNVSHPETKA T0287 92 :ES 1e9gA 115 :DN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLFSKFDRSILGIFL 1e9gA 125 :GETIAYTGQVKQVKALGIMA T0287 125 :FSKPIMFK 1e9gA 147 :DEGETDWK T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1e9gA 156 :IAIDINDPLAPKLNDIEDVEKYF T0287 156 :VMTDEEVNFY 1e9gA 180 :GLLRATNEWF T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 193 :KIPDGKPENQFAFSGEAKNKKYALDIIKETH Number of specific fragments extracted= 15 number of extra gaps= 9 total=2926 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1712196995.pdb -s /var/tmp/to_scwrl_1712196995.seq -o /var/tmp/from_scwrl_1712196995.pdb > /var/tmp/scwrl_1712196995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1712196995.pdb Number of alignments=320 # command:# Prefix for input files set to 1f7lA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-fssp-global-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-fssp-global-adpstyle5.a2m # found chain 1f7lA in training set T0287 1 :MS 1f7lA 1 :GI T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 10 :TELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIR 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2930 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_122330378.pdb -s /var/tmp/to_scwrl_122330378.seq -o /var/tmp/from_scwrl_122330378.pdb > /var/tmp/scwrl_122330378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_122330378.pdb Number of alignments=321 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-fssp-local-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-fssp-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2930 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t04-global-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t04-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1f7lA)R118 T0287 1 :MSNNM 1f7lA 1 :GIYGI T0287 6 :RKLFSMIAD 1f7lA 13 :KRIASMAGR T0287 16 :KDKKEKLIESLQENELLNTDEK 1f7lA 22 :QKRFAERILTRSELDQYYELSE T0287 45 :KTMHDFFKQMHTNKGALDKVLR 1f7lA 44 :KRKNEFLAGRFAAKEAFSKAFG T0287 67 :NYMKDYRAVIKSIGVDKFKKVYR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYI T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKF 1f7lA 90 :ICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=2936 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_440591865.pdb -s /var/tmp/to_scwrl_440591865.seq -o /var/tmp/from_scwrl_440591865.pdb > /var/tmp/scwrl_440591865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440591865.pdb Number of alignments=322 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t04-global-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t04-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1f7lA)R118 T0287 10 :SMIADSKDKKEKLIES 1f7lA 13 :KRIASMAGRQKRFAER T0287 31 :LLNTDEKKKII 1f7lA 29 :ILTRSELDQYY T0287 46 :TMHDFFKQMHTNKGALDKVLRNY 1f7lA 45 :RKNEFLAGRFAAKEAFSKAFGTG T0287 69 :MKDYRAVIKSIGVDKFKKVYR 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYI T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKF 1f7lA 90 :ICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2941 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_762176404.pdb -s /var/tmp/to_scwrl_762176404.seq -o /var/tmp/from_scwrl_762176404.pdb > /var/tmp/scwrl_762176404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762176404.pdb Number of alignments=323 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t04-local-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t04-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 74 :AVIKSIGVDKFKKVYRL 1f7lA 59 :AFSKAFGTGIGRQLSFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=2942 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t04-local-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t04-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2942 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t06-global-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t06-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)N4 because first residue in template chain is (1f7lA)G1 Warning: unaligning (T0287)D186 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1f7lA 2 :IYGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSE T0287 47 :MHDFFKQMHTNKGALDKVLR 1f7lA 46 :KNEFLAGRFAAKEAFSKAFG T0287 67 :NYMKDYRAVIKSIGVDKFKKVYR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYI T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKF 1f7lA 90 :ICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2946 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1932567798.pdb -s /var/tmp/to_scwrl_1932567798.seq -o /var/tmp/from_scwrl_1932567798.pdb > /var/tmp/scwrl_1932567798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1932567798.pdb Number of alignments=324 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t06-global-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t06-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)N4 because first residue in template chain is (1f7lA)G1 T0287 5 :MRK 1f7lA 2 :IYG T0287 11 :MIADSKDKKEKLIE 1f7lA 11 :ELKRIASMAGRQKR T0287 27 :QENELLNTDEKKKIIDQIK 1f7lA 25 :FAERILTRSELDQYYELSE T0287 46 :TMHDFFKQMHTNKGALDKVLRNY 1f7lA 45 :RKNEFLAGRFAAKEAFSKAFGTG T0287 69 :MKDYRAVIKSIGVDKFKKVYR 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYI T0287 181 :LLMKFDLE 1f7lA 90 :ICTKLSPA Number of specific fragments extracted= 6 number of extra gaps= 0 total=2952 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_939298738.pdb -s /var/tmp/to_scwrl_939298738.seq -o /var/tmp/from_scwrl_939298738.pdb > /var/tmp/scwrl_939298738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939298738.pdb Number of alignments=325 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t06-local-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t06-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 76 :IKSIGVD 1f7lA 2 :IYGIGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=2953 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t06-local-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t06-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2953 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t2k-global-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t2k-global-adpstyle1.a2m # found chain 1f7lA in training set T0287 1 :MSNNMRKLFSMIADSKDKKEK 1f7lA 1 :GIYGIGLDITELKRIASMAGR T0287 24 :ESLQENELLNTDEKKKIIDQ 1f7lA 22 :QKRFAERILTRSELDQYYEL T0287 45 :KT 1f7lA 42 :SE T0287 47 :MHDFFKQMHTNKGALDKVLRNYMK 1f7lA 46 :KNEFLAGRFAAKEAFSKAFGTGIG T0287 71 :DYRAVIKSIGVDKFKKVYRLLES 1f7lA 71 :QLSFQDIEIRKDQNGKPYIICTK T0287 181 :LLMKFDLEKYMKEKGVQNA 1f7lA 94 :LSPAAVHVSITHTKEYAAA Number of specific fragments extracted= 6 number of extra gaps= 0 total=2959 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1363597644.pdb -s /var/tmp/to_scwrl_1363597644.seq -o /var/tmp/from_scwrl_1363597644.pdb > /var/tmp/scwrl_1363597644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1363597644.pdb Number of alignments=326 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t2k-global-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t2k-global-adpstyle5.a2m # found chain 1f7lA in training set T0287 1 :MSNNMRKLFSMIADSKDKKEK 1f7lA 1 :GIYGIGLDITELKRIASMAGR T0287 24 :ESLQENELLNTDEKKKIIDQ 1f7lA 22 :QKRFAERILTRSELDQYYEL T0287 45 :K 1f7lA 42 :S T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMK 1f7lA 45 :RKNEFLAGRFAAKEAFSKAFGTGIG T0287 72 :YRAVIKSIGVDKFK 1f7lA 70 :RQLSFQDIEIRKDQ T0287 86 :KVYRLLES 1f7lA 86 :KPYIICTK T0287 181 :LLMKFDLEKYMKEKGVQNA 1f7lA 94 :LSPAAVHVSITHTKEYAAA Number of specific fragments extracted= 7 number of extra gaps= 0 total=2966 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_548047306.pdb -s /var/tmp/to_scwrl_548047306.seq -o /var/tmp/from_scwrl_548047306.pdb > /var/tmp/scwrl_548047306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_548047306.pdb Number of alignments=327 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t2k-local-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t2k-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 76 :IKSIGVD 1f7lA 2 :IYGIGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=2967 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t2k-local-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t2k-local-adpstyle5.a2m # found chain 1f7lA in training set T0287 30 :ELLNTDEKKKIIDQ 1f7lA 28 :RILTRSELDQYYEL T0287 45 :KT 1f7lA 42 :SE T0287 47 :MHDFFKQMHTNKGALDKVLRNYMK 1f7lA 46 :KNEFLAGRFAAKEAFSKAFGTGIG T0287 72 :YRAVIKSIGVDKFKK 1f7lA 70 :RQLSFQDIEIRKDQN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2971 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_734235491.pdb -s /var/tmp/to_scwrl_734235491.seq -o /var/tmp/from_scwrl_734235491.pdb > /var/tmp/scwrl_734235491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_734235491.pdb Number of alignments=328 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-simplesw-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-simplesw-adpstyle1.a2m # found chain 1f7lA in training set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2972 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_866283382.pdb -s /var/tmp/to_scwrl_866283382.seq -o /var/tmp/from_scwrl_866283382.pdb > /var/tmp/scwrl_866283382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_866283382.pdb Number of alignments=329 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-simplesw-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-simplesw-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2972 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-global-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t04-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)E137 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 9 :ITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2976 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1893931311.pdb -s /var/tmp/to_scwrl_1893931311.seq -o /var/tmp/from_scwrl_1893931311.pdb > /var/tmp/scwrl_1893931311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1893931311.pdb Number of alignments=330 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-global-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)Q173 because last residue in template chain is (1f7lA)R118 T0287 1 :MS 1f7lA 1 :GI T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 10 :TELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFL 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSI T0287 159 :DEEVNFYANLKTIE 1f7lA 104 :THTKEYAAAQVVIE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2981 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_896762176.pdb -s /var/tmp/to_scwrl_896762176.seq -o /var/tmp/from_scwrl_896762176.pdb > /var/tmp/scwrl_896762176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_896762176.pdb Number of alignments=331 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :MSN 1f7lA 1 :GIY T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2985 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1882386349.pdb -s /var/tmp/to_scwrl_1882386349.seq -o /var/tmp/from_scwrl_1882386349.pdb > /var/tmp/scwrl_1882386349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882386349.pdb Number of alignments=332 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 7 number of extra gaps= 0 total=2992 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_989400062.pdb -s /var/tmp/to_scwrl_989400062.seq -o /var/tmp/from_scwrl_989400062.pdb > /var/tmp/scwrl_989400062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_989400062.pdb Number of alignments=333 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-local-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t04-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2993 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_554251192.pdb -s /var/tmp/to_scwrl_554251192.seq -o /var/tmp/from_scwrl_554251192.pdb > /var/tmp/scwrl_554251192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554251192.pdb Number of alignments=334 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-local-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2993 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2996 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1977989996.pdb -s /var/tmp/to_scwrl_1977989996.seq -o /var/tmp/from_scwrl_1977989996.pdb > /var/tmp/scwrl_1977989996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977989996.pdb Number of alignments=335 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3002 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1353677478.pdb -s /var/tmp/to_scwrl_1353677478.seq -o /var/tmp/from_scwrl_1353677478.pdb > /var/tmp/scwrl_1353677478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353677478.pdb Number of alignments=336 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-global-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t06-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)E137 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 9 :ITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3006 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_755472522.pdb -s /var/tmp/to_scwrl_755472522.seq -o /var/tmp/from_scwrl_755472522.pdb > /var/tmp/scwrl_755472522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_755472522.pdb Number of alignments=337 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-global-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)Q173 because last residue in template chain is (1f7lA)R118 T0287 1 :MS 1f7lA 1 :GI T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 10 :TELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFL 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSI T0287 159 :DEEVNFYANLKTIE 1f7lA 104 :THTKEYAAAQVVIE Number of specific fragments extracted= 5 number of extra gaps= 0 total=3011 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_166249803.pdb -s /var/tmp/to_scwrl_166249803.seq -o /var/tmp/from_scwrl_166249803.pdb > /var/tmp/scwrl_166249803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_166249803.pdb Number of alignments=338 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :MSN 1f7lA 1 :GIY T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3015 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1182410738.pdb -s /var/tmp/to_scwrl_1182410738.seq -o /var/tmp/from_scwrl_1182410738.pdb > /var/tmp/scwrl_1182410738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182410738.pdb Number of alignments=339 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 7 number of extra gaps= 0 total=3022 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1850818246.pdb -s /var/tmp/to_scwrl_1850818246.seq -o /var/tmp/from_scwrl_1850818246.pdb > /var/tmp/scwrl_1850818246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1850818246.pdb Number of alignments=340 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-local-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t06-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3023 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_267750624.pdb -s /var/tmp/to_scwrl_267750624.seq -o /var/tmp/from_scwrl_267750624.pdb > /var/tmp/scwrl_267750624.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_267750624.pdb Number of alignments=341 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-local-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3023 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=3026 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1380027585.pdb -s /var/tmp/to_scwrl_1380027585.seq -o /var/tmp/from_scwrl_1380027585.pdb > /var/tmp/scwrl_1380027585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380027585.pdb Number of alignments=342 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3032 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1938038785.pdb -s /var/tmp/to_scwrl_1938038785.seq -o /var/tmp/from_scwrl_1938038785.pdb > /var/tmp/scwrl_1938038785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938038785.pdb Number of alignments=343 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-global-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t2k-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)E137 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 9 :ITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3036 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1619357945.pdb -s /var/tmp/to_scwrl_1619357945.seq -o /var/tmp/from_scwrl_1619357945.pdb > /var/tmp/scwrl_1619357945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1619357945.pdb Number of alignments=344 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-global-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)Q173 because last residue in template chain is (1f7lA)R118 T0287 1 :MS 1f7lA 1 :GI T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 10 :TELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFL 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSI T0287 159 :DEEVNFYANLKTIE 1f7lA 104 :THTKEYAAAQVVIE Number of specific fragments extracted= 5 number of extra gaps= 0 total=3041 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_223366829.pdb -s /var/tmp/to_scwrl_223366829.seq -o /var/tmp/from_scwrl_223366829.pdb > /var/tmp/scwrl_223366829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_223366829.pdb Number of alignments=345 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :MSN 1f7lA 1 :GIY T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3045 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2050174415.pdb -s /var/tmp/to_scwrl_2050174415.seq -o /var/tmp/from_scwrl_2050174415.pdb > /var/tmp/scwrl_2050174415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050174415.pdb Number of alignments=346 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 7 number of extra gaps= 0 total=3052 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1412604552.pdb -s /var/tmp/to_scwrl_1412604552.seq -o /var/tmp/from_scwrl_1412604552.pdb > /var/tmp/scwrl_1412604552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412604552.pdb Number of alignments=347 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-local-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t2k-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3053 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_982833492.pdb -s /var/tmp/to_scwrl_982833492.seq -o /var/tmp/from_scwrl_982833492.pdb > /var/tmp/scwrl_982833492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_982833492.pdb Number of alignments=348 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-local-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3053 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=3056 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_341987325.pdb -s /var/tmp/to_scwrl_341987325.seq -o /var/tmp/from_scwrl_341987325.pdb > /var/tmp/scwrl_341987325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_341987325.pdb Number of alignments=349 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3062 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_736916011.pdb -s /var/tmp/to_scwrl_736916011.seq -o /var/tmp/from_scwrl_736916011.pdb > /var/tmp/scwrl_736916011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736916011.pdb Number of alignments=350 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-muscle.a2m.gz # 1f7lA read from T0287-1f7lA-t04-muscle.a2m.gz # found chain 1f7lA in training set T0287 1 :MSNNMR 1f7lA 1 :GIYGIG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKG 1f7lA 7 :LDITELKRIASMAGRQKRFAERILTRSE T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1f7lA 35 :LDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQ T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLK 1f7lA 76 :DIEIRKDQNGKPYIICTKLSPAAVHVSIT T0287 186 :DLEKYMKEKGVQNA 1f7lA 105 :HTKEYAAAQVVIER Number of specific fragments extracted= 5 number of extra gaps= 0 total=3067 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_547546841.pdb -s /var/tmp/to_scwrl_547546841.seq -o /var/tmp/from_scwrl_547546841.pdb > /var/tmp/scwrl_547546841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547546841.pdb Number of alignments=351 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-muscle.a2m.gz # 1f7lA read from T0287-1f7lA-t06-muscle.a2m.gz # found chain 1f7lA in training set T0287 1 :MSNNMR 1f7lA 1 :GIYGIG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKG 1f7lA 7 :LDITELKRIASMAGRQKRFAERILTRSE T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1f7lA 35 :LDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQ T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLK 1f7lA 76 :DIEIRKDQNGKPYIICTKLSPAAVHVSIT T0287 186 :DLEKYMKEKGVQNA 1f7lA 105 :HTKEYAAAQVVIER Number of specific fragments extracted= 5 number of extra gaps= 0 total=3072 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_464317703.pdb -s /var/tmp/to_scwrl_464317703.seq -o /var/tmp/from_scwrl_464317703.pdb > /var/tmp/scwrl_464317703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464317703.pdb Number of alignments=352 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-muscle.a2m.gz # 1f7lA read from T0287-1f7lA-t2k-muscle.a2m.gz # found chain 1f7lA in training set Warning: unaligning (T0287)L8 because first residue in template chain is (1f7lA)G1 Warning: unaligning (T0287)D186 because last residue in template chain is (1f7lA)R118 T0287 9 :FSMIADSKDKKEKLIESLQENE 1f7lA 2 :IYGIGLDITELKRIASMAGRQK T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 24 :RFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTG T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGI 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHV T0287 170 :TIEQYNDYVRDLLMKF 1f7lA 102 :SITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3076 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1177507876.pdb -s /var/tmp/to_scwrl_1177507876.seq -o /var/tmp/from_scwrl_1177507876.pdb > /var/tmp/scwrl_1177507876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1177507876.pdb Number of alignments=353 # command:# Prefix for input files set to 1flp/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-fssp-global-adpstyle5.a2m # 1flp read from 1flp-T0287-fssp-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M133 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1flp 25 :GPEFFMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKII 1flp 54 :TVKNTPEMAAQA T0287 42 :DQIKTMHDFFKQM 1flp 67 :SFKGLVSNWVDNL T0287 56 :TNKGALDKVLRNYMKDYRAV 1flp 80 :DNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELL 1flp 100 :GISAGQLEAAFKVLSGFMKSYG T0287 114 :DRSILGIFLPFFSKPIMFK 1flp 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3082 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1309723244.pdb -s /var/tmp/to_scwrl_1309723244.seq -o /var/tmp/from_scwrl_1309723244.pdb > /var/tmp/scwrl_1309723244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1309723244.pdb Number of alignments=354 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-fssp-local-adpstyle5.a2m # 1flp read from 1flp-T0287-fssp-local-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M133 because last residue in template chain is (1flp)M142 T0287 21 :KLIESLQ 1flp 45 :GLFSGAA T0287 30 :ELLNTDEKKKII 1flp 54 :TVKNTPEMAAQA T0287 42 :DQIKTMHDFFKQM 1flp 67 :SFKGLVSNWVDNL T0287 56 :TNKGALDKVLRNYMKDYRAV 1flp 80 :DNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1flp 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 114 :DRSILGIFLPFFSKPIMFK 1flp 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3088 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_249401854.pdb -s /var/tmp/to_scwrl_249401854.seq -o /var/tmp/from_scwrl_249401854.pdb > /var/tmp/scwrl_249401854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_249401854.pdb Number of alignments=355 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-t2k-global-adpstyle1.a2m # 1flp read from 1flp-T0287-t2k-global-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)F121 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1flp 25 :GPEFFMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1flp 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 102 :IAENPNFLFSKFDRSILGI 1flp 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 4 number of extra gaps= 1 total=3092 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2116806614.pdb -s /var/tmp/to_scwrl_2116806614.seq -o /var/tmp/from_scwrl_2116806614.pdb > /var/tmp/scwrl_2116806614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2116806614.pdb Number of alignments=356 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-t2k-global-adpstyle5.a2m # 1flp read from 1flp-T0287-t2k-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1flp 25 :GPEFFMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1flp 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSK 1flp 123 :DEGAWTAVAGALMGEIEP Number of specific fragments extracted= 4 number of extra gaps= 1 total=3096 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_525837242.pdb -s /var/tmp/to_scwrl_525837242.seq -o /var/tmp/from_scwrl_525837242.pdb > /var/tmp/scwrl_525837242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_525837242.pdb Number of alignments=357 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-t2k-local-adpstyle1.a2m # 1flp read from 1flp-T0287-t2k-local-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADSKDKKEKLIESLQ 1flp 29 :FMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLL 1flp 100 :GISAGQLEAAFKVL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3099 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_797449161.pdb -s /var/tmp/to_scwrl_797449161.seq -o /var/tmp/from_scwrl_797449161.pdb > /var/tmp/scwrl_797449161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797449161.pdb Number of alignments=358 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-t2k-local-adpstyle5.a2m # 1flp read from 1flp-T0287-t2k-local-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADSKDKKEKLIESLQ 1flp 29 :FMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLE 1flp 100 :GISAGQLEAAFKVLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=3102 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_703558458.pdb -s /var/tmp/to_scwrl_703558458.seq -o /var/tmp/from_scwrl_703558458.pdb > /var/tmp/scwrl_703558458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_703558458.pdb Number of alignments=359 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-simplesw-adpstyle1.a2m # 1flp read from T0287-1flp-simplesw-adpstyle1.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1flp 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3104 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1392120623.pdb -s /var/tmp/to_scwrl_1392120623.seq -o /var/tmp/from_scwrl_1392120623.pdb > /var/tmp/scwrl_1392120623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1392120623.pdb Number of alignments=360 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-simplesw-adpstyle5.a2m # 1flp read from T0287-1flp-simplesw-adpstyle5.a2m # found chain 1flp in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 69 :KGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1flp 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3106 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_543896825.pdb -s /var/tmp/to_scwrl_543896825.seq -o /var/tmp/from_scwrl_543896825.pdb > /var/tmp/scwrl_543896825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_543896825.pdb Number of alignments=361 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-global-adpstyle1.a2m # 1flp read from T0287-1flp-t04-global-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M191 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1flp 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1flp 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1flp 137 :EIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3112 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1600320633.pdb -s /var/tmp/to_scwrl_1600320633.seq -o /var/tmp/from_scwrl_1600320633.pdb > /var/tmp/scwrl_1600320633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1600320633.pdb Number of alignments=362 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-global-adpstyle5.a2m # 1flp read from T0287-1flp-t04-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1flp 102 :SAGQLEAAFKVLS T0287 112 :KF 1flp 115 :GF T0287 142 :IELYGTNL 1flp 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1flp 125 :GAWTAVAGALMG T0287 186 :DLE 1flp 137 :EIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 1 total=3121 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1127023325.pdb -s /var/tmp/to_scwrl_1127023325.seq -o /var/tmp/from_scwrl_1127023325.pdb > /var/tmp/scwrl_1127023325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1127023325.pdb Number of alignments=363 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEK 1flp 28 :FFMALFDAHDDVFA T0287 22 :LIESLQ 1flp 46 :LFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAAN T0287 76 :IKSIGVD 1flp 96 :HKARGIS T0287 83 :KFKKVYRLLES 1flp 105 :QLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1flp 116 :FMKSYGGDEGAWTAVAGALMGE T0287 195 :GVQNA 1flp 138 :IEPDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3129 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1533296887.pdb -s /var/tmp/to_scwrl_1533296887.seq -o /var/tmp/from_scwrl_1533296887.pdb > /var/tmp/scwrl_1533296887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1533296887.pdb Number of alignments=364 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSN 1flp 1 :SLE T0287 4 :NMRKLFSMI 1flp 9 :NVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1flp 19 :AAWGTAGPEFFMALFD T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1flp 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLLM 1flp 121 :GGDEGAWTAVAGALMGEIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3137 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_7088179.pdb -s /var/tmp/to_scwrl_7088179.seq -o /var/tmp/from_scwrl_7088179.pdb > /var/tmp/scwrl_7088179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_7088179.pdb Number of alignments=365 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-local-adpstyle1.a2m # 1flp read from T0287-1flp-t04-local-adpstyle1.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1flp 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3139 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_957529676.pdb -s /var/tmp/to_scwrl_957529676.seq -o /var/tmp/from_scwrl_957529676.pdb > /var/tmp/scwrl_957529676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_957529676.pdb Number of alignments=366 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-local-adpstyle5.a2m # 1flp read from T0287-1flp-t04-local-adpstyle5.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1flp 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3141 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_739490719.pdb -s /var/tmp/to_scwrl_739490719.seq -o /var/tmp/from_scwrl_739490719.pdb > /var/tmp/scwrl_739490719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_739490719.pdb Number of alignments=367 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 6 :RKLFSMIADSKDKK 1flp 26 :PEFFMALFDAHDDV T0287 20 :EKLIESLQ 1flp 44 :SGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1flp 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 4 number of extra gaps= 1 total=3145 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_762560701.pdb -s /var/tmp/to_scwrl_762560701.seq -o /var/tmp/from_scwrl_762560701.pdb > /var/tmp/scwrl_762560701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762560701.pdb Number of alignments=368 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADS 1flp 25 :GPEFFMALFDA T0287 19 :KEKLIESLQ 1flp 36 :HDDVFAKFS T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1flp 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 1 total=3150 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1123779478.pdb -s /var/tmp/to_scwrl_1123779478.seq -o /var/tmp/from_scwrl_1123779478.pdb > /var/tmp/scwrl_1123779478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1123779478.pdb Number of alignments=369 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-global-adpstyle1.a2m # 1flp read from T0287-1flp-t06-global-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M191 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1flp 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1flp 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1flp 137 :EIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3156 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1921901457.pdb -s /var/tmp/to_scwrl_1921901457.seq -o /var/tmp/from_scwrl_1921901457.pdb > /var/tmp/scwrl_1921901457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1921901457.pdb Number of alignments=370 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-global-adpstyle5.a2m # 1flp read from T0287-1flp-t06-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1flp 102 :SAGQLEAAFKVLS T0287 112 :KF 1flp 115 :GF T0287 142 :IELYGTNL 1flp 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1flp 125 :GAWTAVAGALMG T0287 186 :DLE 1flp 137 :EIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 1 total=3165 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_465895300.pdb -s /var/tmp/to_scwrl_465895300.seq -o /var/tmp/from_scwrl_465895300.pdb > /var/tmp/scwrl_465895300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_465895300.pdb Number of alignments=371 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEK 1flp 28 :FFMALFDAHDDVFA T0287 22 :LIESLQ 1flp 46 :LFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAAN T0287 76 :IKSIGVD 1flp 96 :HKARGIS T0287 83 :KFKKVYRLLES 1flp 105 :QLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1flp 116 :FMKSYGGDEGAWTAVAGALMGE T0287 195 :GVQNA 1flp 138 :IEPDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3173 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1391530102.pdb -s /var/tmp/to_scwrl_1391530102.seq -o /var/tmp/from_scwrl_1391530102.pdb > /var/tmp/scwrl_1391530102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1391530102.pdb Number of alignments=372 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSN 1flp 1 :SLE T0287 4 :NMRKLFSMI 1flp 9 :NVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1flp 19 :AAWGTAGPEFFMALFD T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1flp 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLLM 1flp 121 :GGDEGAWTAVAGALMGEIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3181 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1154445395.pdb -s /var/tmp/to_scwrl_1154445395.seq -o /var/tmp/from_scwrl_1154445395.pdb > /var/tmp/scwrl_1154445395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1154445395.pdb Number of alignments=373 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-local-adpstyle1.a2m # 1flp read from T0287-1flp-t06-local-adpstyle1.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1flp 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3183 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_256450439.pdb -s /var/tmp/to_scwrl_256450439.seq -o /var/tmp/from_scwrl_256450439.pdb > /var/tmp/scwrl_256450439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_256450439.pdb Number of alignments=374 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-local-adpstyle5.a2m # 1flp read from T0287-1flp-t06-local-adpstyle5.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1flp 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3185 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_863404401.pdb -s /var/tmp/to_scwrl_863404401.seq -o /var/tmp/from_scwrl_863404401.pdb > /var/tmp/scwrl_863404401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_863404401.pdb Number of alignments=375 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 6 :RKLFSMIADSKDKK 1flp 26 :PEFFMALFDAHDDV T0287 20 :EKLIESLQ 1flp 44 :SGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1flp 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 4 number of extra gaps= 1 total=3189 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1377812224.pdb -s /var/tmp/to_scwrl_1377812224.seq -o /var/tmp/from_scwrl_1377812224.pdb > /var/tmp/scwrl_1377812224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377812224.pdb Number of alignments=376 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADS 1flp 25 :GPEFFMALFDA T0287 19 :KEKLIESLQ 1flp 36 :HDDVFAKFS T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1flp 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 1 total=3194 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_159141207.pdb -s /var/tmp/to_scwrl_159141207.seq -o /var/tmp/from_scwrl_159141207.pdb > /var/tmp/scwrl_159141207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_159141207.pdb Number of alignments=377 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-global-adpstyle1.a2m # 1flp read from T0287-1flp-t2k-global-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M191 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1flp 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1flp 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1flp 137 :EIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3200 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_128525306.pdb -s /var/tmp/to_scwrl_128525306.seq -o /var/tmp/from_scwrl_128525306.pdb > /var/tmp/scwrl_128525306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_128525306.pdb Number of alignments=378 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-global-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1flp 102 :SAGQLEAAFKVLS T0287 112 :KF 1flp 115 :GF T0287 142 :IELYGTNL 1flp 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1flp 125 :GAWTAVAGALMG T0287 186 :DLE 1flp 137 :EIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 1 total=3209 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_213162069.pdb -s /var/tmp/to_scwrl_213162069.seq -o /var/tmp/from_scwrl_213162069.pdb > /var/tmp/scwrl_213162069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_213162069.pdb Number of alignments=379 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDK 1flp 28 :FFMALFDAHDD T0287 22 :LIESL 1flp 39 :VFAKF T0287 27 :Q 1flp 51 :A T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAAN T0287 76 :IKSIGVD 1flp 96 :HKARGIS T0287 83 :KFKKVYRLLES 1flp 105 :QLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1flp 116 :FMKSYGGDEGAWTAVAGALMGE T0287 187 :L 1flp 138 :I T0287 196 :VQNA 1flp 139 :EPDM Number of specific fragments extracted= 10 number of extra gaps= 1 total=3219 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_501128532.pdb -s /var/tmp/to_scwrl_501128532.seq -o /var/tmp/from_scwrl_501128532.pdb > /var/tmp/scwrl_501128532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501128532.pdb Number of alignments=380 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSN 1flp 1 :SLE T0287 4 :NMRKLFSMI 1flp 9 :NVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1flp 19 :AAWGTAGPEFFMALFD T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1flp 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLLM 1flp 121 :GGDEGAWTAVAGALMGEIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3227 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_865441318.pdb -s /var/tmp/to_scwrl_865441318.seq -o /var/tmp/from_scwrl_865441318.pdb > /var/tmp/scwrl_865441318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_865441318.pdb Number of alignments=381 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-local-adpstyle1.a2m # 1flp read from T0287-1flp-t2k-local-adpstyle1.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1flp 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3229 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_760708910.pdb -s /var/tmp/to_scwrl_760708910.seq -o /var/tmp/from_scwrl_760708910.pdb > /var/tmp/scwrl_760708910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_760708910.pdb Number of alignments=382 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-local-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-local-adpstyle5.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1flp 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3231 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_965446235.pdb -s /var/tmp/to_scwrl_965446235.seq -o /var/tmp/from_scwrl_965446235.pdb > /var/tmp/scwrl_965446235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_965446235.pdb Number of alignments=383 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 24 :ESLQ 1flp 48 :SGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1flp 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 3 number of extra gaps= 1 total=3234 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2042949194.pdb -s /var/tmp/to_scwrl_2042949194.seq -o /var/tmp/from_scwrl_2042949194.pdb > /var/tmp/scwrl_2042949194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2042949194.pdb Number of alignments=384 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADS 1flp 25 :GPEFFMALFDA T0287 19 :KEKLIESLQ 1flp 36 :HDDVFAKFS T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1flp 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 1 total=3239 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2070432155.pdb -s /var/tmp/to_scwrl_2070432155.seq -o /var/tmp/from_scwrl_2070432155.pdb > /var/tmp/scwrl_2070432155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2070432155.pdb Number of alignments=385 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1flp-t2k-muscle.a2m.gz # 1flp read from T0287-1flp-t2k-muscle.a2m.gz # found chain 1flp in template set Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)K194 because last residue in template chain is (1flp)M142 T0287 1 :MSN 1flp 2 :LEA T0287 42 :DQIKTMHDFFKQMHTNKGALD 1flp 5 :AQKSNVTSSWAKASAAWGTAG T0287 63 :KVLRNYMKDYRAVIK 1flp 27 :EFFMALFDAHDDVFA T0287 83 :KFKKVYRLLE 1flp 42 :KFSGLFSGAA T0287 95 :TMELLHAIAENPNFLFSKFDR 1flp 54 :TVKNTPEMAAQAQSFKGLVSN T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1flp 75 :WVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKV T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1flp 113 :LSGFMKSYGGDEGAWTAVAGAL T0287 187 :LEKYMKE 1flp 135 :MGEIEPD Number of specific fragments extracted= 8 number of extra gaps= 1 total=3247 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1214848089.pdb -s /var/tmp/to_scwrl_1214848089.seq -o /var/tmp/from_scwrl_1214848089.pdb > /var/tmp/scwrl_1214848089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1214848089.pdb Number of alignments=386 # command:# Prefix for input files set to 1fzcA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-fssp-global-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-fssp-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)L181 because last residue in template chain is (1fzcA)D192 T0287 9 :FSMIADSKDKKEKLIESLQE 1fzcA 122 :LKRKVIEKVQHIQLLQKNVR T0287 36 :EKKKIIDQIKTMHDFFKQ 1fzcA 142 :AQLVDMKRLEVDIDIKIR T0287 94 :ETMELL 1fzcA 160 :SCRGSC T0287 107 :NFLF 1fzcA 167 :RALA T0287 163 :NFYANLKTIEQYNDYVRD 1fzcA 174 :DLKDYEDQQKQLEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3252 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2012272161.pdb -s /var/tmp/to_scwrl_2012272161.seq -o /var/tmp/from_scwrl_2012272161.pdb > /var/tmp/scwrl_2012272161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012272161.pdb Number of alignments=387 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-fssp-local-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-fssp-local-adpstyle5.a2m # found chain 1fzcA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3252 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t04-global-adpstyle1.a2m # 1fzcA read from 1fzcA-T0287-t04-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)E94 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA T0287 73 :RAVIKSIGVDKFKKVYRLLES 1fzcA 171 :REVDLKDYEDQQKQLEQVIAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3254 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_448785750.pdb -s /var/tmp/to_scwrl_448785750.seq -o /var/tmp/from_scwrl_448785750.pdb > /var/tmp/scwrl_448785750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_448785750.pdb Number of alignments=388 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t04-global-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-t04-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA T0287 77 :KSIGVDKFKKVYRLLESETM 1fzcA 171 :REVDLKDYEDQQKQLEQVIA Number of specific fragments extracted= 2 number of extra gaps= 0 total=3256 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2012297250.pdb -s /var/tmp/to_scwrl_2012297250.seq -o /var/tmp/from_scwrl_2012297250.pdb > /var/tmp/scwrl_2012297250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012297250.pdb Number of alignments=389 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t04-local-adpstyle1.a2m # 1fzcA read from 1fzcA-T0287-t04-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVD 1fzcA 134 :QLLQKNVRAQLVDMKRLEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=3257 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_568346972.pdb -s /var/tmp/to_scwrl_568346972.seq -o /var/tmp/from_scwrl_568346972.pdb > /var/tmp/scwrl_568346972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_568346972.pdb Number of alignments=390 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t04-local-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-t04-local-adpstyle5.a2m # found chain 1fzcA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3257 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t2k-global-adpstyle1.a2m # 1fzcA read from 1fzcA-T0287-t2k-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)D82 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA T0287 67 :NYMKDYRAVIKSIGV 1fzcA 177 :DYEDQQKQLEQVIAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3259 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1840906374.pdb -s /var/tmp/to_scwrl_1840906374.seq -o /var/tmp/from_scwrl_1840906374.pdb > /var/tmp/scwrl_1840906374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1840906374.pdb Number of alignments=391 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t2k-global-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-t2k-global-adpstyle5.a2m # found chain 1fzcA in template set T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA T0287 77 :KSIGVDKFKKVYRLLES 1fzcA 171 :REVDLKDYEDQQKQLEQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=3261 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_408710428.pdb -s /var/tmp/to_scwrl_408710428.seq -o /var/tmp/from_scwrl_408710428.pdb > /var/tmp/scwrl_408710428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408710428.pdb Number of alignments=392 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t2k-local-adpstyle1.a2m # 1fzcA read from 1fzcA-T0287-t2k-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVD 1fzcA 134 :QLLQKNVRAQLVDMKRLEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=3262 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_21183959.pdb -s /var/tmp/to_scwrl_21183959.seq -o /var/tmp/from_scwrl_21183959.pdb > /var/tmp/scwrl_21183959.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_21183959.pdb Number of alignments=393 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t2k-local-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-t2k-local-adpstyle5.a2m # found chain 1fzcA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3262 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-simplesw-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-simplesw-adpstyle1.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3263 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_820446053.pdb -s /var/tmp/to_scwrl_820446053.seq -o /var/tmp/from_scwrl_820446053.pdb > /var/tmp/scwrl_820446053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820446053.pdb Number of alignments=394 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-simplesw-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-simplesw-adpstyle5.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3264 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1942007315.pdb -s /var/tmp/to_scwrl_1942007315.seq -o /var/tmp/from_scwrl_1942007315.pdb > /var/tmp/scwrl_1942007315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1942007315.pdb Number of alignments=395 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-global-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t04-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL T0287 166 :ANLKTIEQYNDYVR 1fzcA 170 :AREVDLKDYEDQQK T0287 186 :DLEKYMKE 1fzcA 184 :QLEQVIAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3268 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_28272138.pdb -s /var/tmp/to_scwrl_28272138.seq -o /var/tmp/from_scwrl_28272138.pdb > /var/tmp/scwrl_28272138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28272138.pdb Number of alignments=396 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-global-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR T0287 78 :SIGVD 1fzcA 172 :EVDLK T0287 173 :QYNDY 1fzcA 177 :DYEDQ T0287 184 :KFDLEKYMKE 1fzcA 182 :QKQLEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3273 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1777975728.pdb -s /var/tmp/to_scwrl_1777975728.seq -o /var/tmp/from_scwrl_1777975728.pdb > /var/tmp/scwrl_1777975728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1777975728.pdb Number of alignments=397 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 134 :SIREMD 1fzcA 169 :LAREVD T0287 171 :IEQYNDYVRD 1fzcA 175 :LKDYEDQQKQ T0287 187 :LEKYMKE 1fzcA 185 :LEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3278 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_534014387.pdb -s /var/tmp/to_scwrl_534014387.seq -o /var/tmp/from_scwrl_534014387.pdb > /var/tmp/scwrl_534014387.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_534014387.pdb Number of alignments=398 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 158 :TDEEV 1fzcA 169 :LAREV T0287 167 :NLKTIEQYNDYV 1fzcA 174 :DLKDYEDQQKQL T0287 188 :EKYMKE 1fzcA 186 :EQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3283 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_790832839.pdb -s /var/tmp/to_scwrl_790832839.seq -o /var/tmp/from_scwrl_790832839.pdb > /var/tmp/scwrl_790832839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_790832839.pdb Number of alignments=399 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-local-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t04-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3284 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_754271560.pdb -s /var/tmp/to_scwrl_754271560.seq -o /var/tmp/from_scwrl_754271560.pdb > /var/tmp/scwrl_754271560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_754271560.pdb Number of alignments=400 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-local-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-local-adpstyle5.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3285 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_308432197.pdb -s /var/tmp/to_scwrl_308432197.seq -o /var/tmp/from_scwrl_308432197.pdb > /var/tmp/scwrl_308432197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_308432197.pdb Number of alignments=401 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 79 :IGVDK 1fzcA 171 :REVDL T0287 89 :RLLESETMELLHAIAE 1fzcA 176 :KDYEDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3288 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1256728139.pdb -s /var/tmp/to_scwrl_1256728139.seq -o /var/tmp/from_scwrl_1256728139.pdb > /var/tmp/scwrl_1256728139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1256728139.pdb Number of alignments=402 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKG 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG T0287 63 :KVL 1fzcA 176 :KDY T0287 92 :ESETMELLHAIAE 1fzcA 179 :EDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3291 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2145801663.pdb -s /var/tmp/to_scwrl_2145801663.seq -o /var/tmp/from_scwrl_2145801663.pdb > /var/tmp/scwrl_2145801663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2145801663.pdb Number of alignments=403 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-global-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t06-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL T0287 166 :ANLKTIEQYNDYVR 1fzcA 170 :AREVDLKDYEDQQK T0287 186 :DLEKYMKE 1fzcA 184 :QLEQVIAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3295 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1462877592.pdb -s /var/tmp/to_scwrl_1462877592.seq -o /var/tmp/from_scwrl_1462877592.pdb > /var/tmp/scwrl_1462877592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1462877592.pdb Number of alignments=404 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-global-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR T0287 78 :SIGVD 1fzcA 172 :EVDLK T0287 173 :QYNDY 1fzcA 177 :DYEDQ T0287 184 :KFDLEKYMKE 1fzcA 182 :QKQLEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3300 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1513178578.pdb -s /var/tmp/to_scwrl_1513178578.seq -o /var/tmp/from_scwrl_1513178578.pdb > /var/tmp/scwrl_1513178578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1513178578.pdb Number of alignments=405 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 134 :SIREMD 1fzcA 169 :LAREVD T0287 171 :IEQYNDYVRD 1fzcA 175 :LKDYEDQQKQ T0287 187 :LEKYMKE 1fzcA 185 :LEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3305 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_861722417.pdb -s /var/tmp/to_scwrl_861722417.seq -o /var/tmp/from_scwrl_861722417.pdb > /var/tmp/scwrl_861722417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_861722417.pdb Number of alignments=406 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 158 :TDEEV 1fzcA 169 :LAREV T0287 167 :NLKTIEQYNDYV 1fzcA 174 :DLKDYEDQQKQL T0287 188 :EKYMKE 1fzcA 186 :EQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3310 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_693206170.pdb -s /var/tmp/to_scwrl_693206170.seq -o /var/tmp/from_scwrl_693206170.pdb > /var/tmp/scwrl_693206170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_693206170.pdb Number of alignments=407 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-local-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t06-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3311 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1672319785.pdb -s /var/tmp/to_scwrl_1672319785.seq -o /var/tmp/from_scwrl_1672319785.pdb > /var/tmp/scwrl_1672319785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1672319785.pdb Number of alignments=408 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-local-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-local-adpstyle5.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3312 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_990247724.pdb -s /var/tmp/to_scwrl_990247724.seq -o /var/tmp/from_scwrl_990247724.pdb > /var/tmp/scwrl_990247724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_990247724.pdb Number of alignments=409 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 79 :IGVDK 1fzcA 171 :REVDL T0287 89 :RLLESETMELLHAIAE 1fzcA 176 :KDYEDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3315 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_906368240.pdb -s /var/tmp/to_scwrl_906368240.seq -o /var/tmp/from_scwrl_906368240.pdb > /var/tmp/scwrl_906368240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906368240.pdb Number of alignments=410 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKG 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG T0287 63 :KVL 1fzcA 176 :KDY T0287 92 :ESETMELLHAIAE 1fzcA 179 :EDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3318 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_25964671.pdb -s /var/tmp/to_scwrl_25964671.seq -o /var/tmp/from_scwrl_25964671.pdb > /var/tmp/scwrl_25964671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25964671.pdb Number of alignments=411 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-global-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t2k-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL T0287 166 :ANLKTIEQYNDYVR 1fzcA 170 :AREVDLKDYEDQQK T0287 186 :DLEKYMKE 1fzcA 184 :QLEQVIAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3322 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1855689041.pdb -s /var/tmp/to_scwrl_1855689041.seq -o /var/tmp/from_scwrl_1855689041.pdb > /var/tmp/scwrl_1855689041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855689041.pdb Number of alignments=412 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-global-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR T0287 78 :SIGVD 1fzcA 172 :EVDLK T0287 173 :QYNDY 1fzcA 177 :DYEDQ T0287 184 :KFDLEKYMKE 1fzcA 182 :QKQLEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3327 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1667077149.pdb -s /var/tmp/to_scwrl_1667077149.seq -o /var/tmp/from_scwrl_1667077149.pdb > /var/tmp/scwrl_1667077149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1667077149.pdb Number of alignments=413 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 134 :SIREMD 1fzcA 169 :LAREVD T0287 171 :IEQYNDYVRD 1fzcA 175 :LKDYEDQQKQ T0287 187 :LEKYMKE 1fzcA 185 :LEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3332 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_991410906.pdb -s /var/tmp/to_scwrl_991410906.seq -o /var/tmp/from_scwrl_991410906.pdb > /var/tmp/scwrl_991410906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_991410906.pdb Number of alignments=414 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 158 :TDEEV 1fzcA 169 :LAREV T0287 167 :NLKTIEQYNDYV 1fzcA 174 :DLKDYEDQQKQL T0287 188 :EKYMKE 1fzcA 186 :EQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3337 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1751154588.pdb -s /var/tmp/to_scwrl_1751154588.seq -o /var/tmp/from_scwrl_1751154588.pdb > /var/tmp/scwrl_1751154588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1751154588.pdb Number of alignments=415 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-local-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t2k-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3338 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1590025657.pdb -s /var/tmp/to_scwrl_1590025657.seq -o /var/tmp/from_scwrl_1590025657.pdb > /var/tmp/scwrl_1590025657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1590025657.pdb Number of alignments=416 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-local-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-local-adpstyle5.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3339 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_58775348.pdb -s /var/tmp/to_scwrl_58775348.seq -o /var/tmp/from_scwrl_58775348.pdb > /var/tmp/scwrl_58775348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_58775348.pdb Number of alignments=417 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 79 :IGVDK 1fzcA 171 :REVDL T0287 89 :RLLESETMELLHAIAE 1fzcA 176 :KDYEDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3342 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1615943102.pdb -s /var/tmp/to_scwrl_1615943102.seq -o /var/tmp/from_scwrl_1615943102.pdb > /var/tmp/scwrl_1615943102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1615943102.pdb Number of alignments=418 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKG 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG T0287 63 :KVL 1fzcA 176 :KDY T0287 92 :ESETMELLHAIAE 1fzcA 179 :EDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3345 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2038811408.pdb -s /var/tmp/to_scwrl_2038811408.seq -o /var/tmp/from_scwrl_2038811408.pdb > /var/tmp/scwrl_2038811408.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2038811408.pdb Number of alignments=419 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-muscle.a2m.gz # 1fzcA read from T0287-1fzcA-t04-muscle.a2m.gz # found chain 1fzcA in template set Warning: unaligning (T0287)N198 because last residue in template chain is (1fzcA)D192 T0287 1 :M 1fzcA 119 :I T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL T0287 176 :DYVRDLLMKFDLEKYMKEKGVQ 1fzcA 170 :AREVDLKDYEDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3348 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2071072598.pdb -s /var/tmp/to_scwrl_2071072598.seq -o /var/tmp/from_scwrl_2071072598.pdb > /var/tmp/scwrl_2071072598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2071072598.pdb Number of alignments=420 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-muscle.a2m.gz # 1fzcA read from T0287-1fzcA-t2k-muscle.a2m.gz # found chain 1fzcA in template set T0287 1 :MSN 1fzcA 119 :IEV T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 122 :LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 134 :SIREMDSQIEL 1fzcA 165 :CSRALAREVDL T0287 172 :EQYNDYVRDL 1fzcA 176 :KDYEDQQKQL T0287 193 :EKGVQNA 1fzcA 186 :EQVIAKD Number of specific fragments extracted= 5 number of extra gaps= 0 total=3353 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_36806427.pdb -s /var/tmp/to_scwrl_36806427.seq -o /var/tmp/from_scwrl_36806427.pdb > /var/tmp/scwrl_36806427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_36806427.pdb Number of alignments=421 # command:# Prefix for input files set to 1hh8A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-fssp-global-adpstyle5.a2m # 1hh8A read from 1e96B-T0287-fssp-global-adpstyle5.a2m # found chain 1hh8A in training set T0287 43 :QIKTMHDFFKQM 1hh8A 21 :DWKGALDAFSAV T0287 56 :TNKGA 1hh8A 34 :DPHSR T0287 67 :NYMKDY 1hh8A 39 :ICFNIG T0287 95 :TMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQ 1hh8A 57 :EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG T0287 142 :IELYGTNLPLLKLFVMTDEEV 1hh8A 109 :YKILGLQFKLFACEVLYNIAF T0287 164 :FYANLKTIEQYNDYVRDLL 1hh8A 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKFDLEKYMKEKGVQN 1hh8A 152 :SEPRHSKIDKAMECVW Number of specific fragments extracted= 7 number of extra gaps= 0 total=3360 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1732234135.pdb -s /var/tmp/to_scwrl_1732234135.seq -o /var/tmp/from_scwrl_1732234135.pdb > /var/tmp/scwrl_1732234135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732234135.pdb Number of alignments=422 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-fssp-local-adpstyle5.a2m # 1hh8A read from 1e96B-T0287-fssp-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 113 :FDRSILGIFLPFFSKPIMFKMSIR 1hh8A 107 :IDYKILGLQFKLFACEVLYNIAFM T0287 137 :EMDSQIE 1hh8A 132 :AKKEEWK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3362 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_332299380.pdb -s /var/tmp/to_scwrl_332299380.seq -o /var/tmp/from_scwrl_332299380.pdb > /var/tmp/scwrl_332299380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_332299380.pdb Number of alignments=423 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t04-global-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t04-global-adpstyle1.a2m # found chain 1hh8A in training set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLN 1hh8A 66 :RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL T0287 170 :TIEQ 1hh8A 99 :IQLR T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 119 :FACEVLYNIAFMYAKKEEWKKAEEQL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3365 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_57990386.pdb -s /var/tmp/to_scwrl_57990386.seq -o /var/tmp/from_scwrl_57990386.pdb > /var/tmp/scwrl_57990386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_57990386.pdb Number of alignments=424 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t04-global-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t04-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)Q197 because last residue in template chain is (1hh8A)L193 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELL 1hh8A 3 :LVEAISLWNEGVLAADKKDWKGALDAFSAV T0287 46 :T 1hh8A 33 :Q T0287 48 :HD 1hh8A 34 :DP T0287 51 :FKQMHTNKGALDKVLRNY 1hh8A 36 :HSRICFNIGCMYTILKNM T0287 143 :ELYGTNLPLLKLFVMTDEEVNFY 1hh8A 99 :IQLRGNQLIDYKILGLQFKLFAC T0287 166 :ANLK 1hh8A 125 :YNIA T0287 170 :TIE 1hh8A 147 :ATS T0287 173 :QYNDYV 1hh8A 170 :KLYEPV T0287 180 :DLLMKFDLEKYMKEKGV 1hh8A 176 :VIPVGRLFRPNERQVAQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=3374 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_405196541.pdb -s /var/tmp/to_scwrl_405196541.seq -o /var/tmp/from_scwrl_405196541.pdb > /var/tmp/scwrl_405196541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_405196541.pdb Number of alignments=425 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t04-local-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t04-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 20 :EKLI 1hh8A 95 :KEAL T0287 143 :ELYGTNLPLLKLFVMTDEEVNF 1hh8A 99 :IQLRGNQLIDYKILGLQFKLFA Number of specific fragments extracted= 2 number of extra gaps= 0 total=3376 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_126823048.pdb -s /var/tmp/to_scwrl_126823048.seq -o /var/tmp/from_scwrl_126823048.pdb > /var/tmp/scwrl_126823048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126823048.pdb Number of alignments=426 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t04-local-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t04-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 143 :ELYGTNLPLLKLFVMTDEEVN 1hh8A 99 :IQLRGNQLIDYKILGLQFKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3377 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_86262524.pdb -s /var/tmp/to_scwrl_86262524.seq -o /var/tmp/from_scwrl_86262524.pdb > /var/tmp/scwrl_86262524.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86262524.pdb Number of alignments=427 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t06-global-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t06-global-adpstyle1.a2m # found chain 1hh8A in training set T0287 1 :MSNNMRKLFSMIADSKDKKEK 1hh8A 66 :RDKHLAVAYFQRGMLYYQTEK T0287 131 :FKMSIREMDSQIELYGTNLPL 1hh8A 87 :YDLAIKDLKEALIQLRGNQLI T0287 152 :LKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1hh8A 118 :LFACEVLYNIAFMYAKKEEWKKAEEQLALATSM T0287 185 :FDLEKYMKEKGVQNA 1hh8A 161 :KAMECVWKQKLYEPV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3381 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_35688623.pdb -s /var/tmp/to_scwrl_35688623.seq -o /var/tmp/from_scwrl_35688623.pdb > /var/tmp/scwrl_35688623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_35688623.pdb Number of alignments=428 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t06-global-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t06-global-adpstyle5.a2m # found chain 1hh8A in training set T0287 12 :IADSKDKKEKLI 1hh8A 43 :IGCMYTILKNMT T0287 24 :ESLQENELLNTDE 1hh8A 58 :KAFTRSINRDKHL T0287 52 :KQMHTNKGALDKVLRN 1hh8A 71 :AVAYFQRGMLYYQTEK T0287 105 :NPNFLFS 1hh8A 153 :EPRHSKI T0287 196 :VQNA 1hh8A 190 :VAQL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3386 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_660837436.pdb -s /var/tmp/to_scwrl_660837436.seq -o /var/tmp/from_scwrl_660837436.pdb > /var/tmp/scwrl_660837436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_660837436.pdb Number of alignments=429 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t06-local-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t06-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 3 :NNMRKLF 1hh8A 110 :KILGLQF T0287 167 :NLKTIEQYNDYVRDLLMKFDLEK 1hh8A 117 :KLFACEVLYNIAFMYAKKEEWKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3388 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_877095364.pdb -s /var/tmp/to_scwrl_877095364.seq -o /var/tmp/from_scwrl_877095364.pdb > /var/tmp/scwrl_877095364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_877095364.pdb Number of alignments=430 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t06-local-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t06-local-adpstyle5.a2m # found chain 1hh8A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3388 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t2k-global-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t2k-global-adpstyle1.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)L181 because last residue in template chain is (1hh8A)L193 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1hh8A 4 :VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSR T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1hh8A 39 :ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT T0287 100 :HAIAENPNFLFS 1hh8A 96 :EALIQLRGNQLI T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRD 1hh8A 124 :LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=3392 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_789960183.pdb -s /var/tmp/to_scwrl_789960183.seq -o /var/tmp/from_scwrl_789960183.pdb > /var/tmp/scwrl_789960183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_789960183.pdb Number of alignments=431 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t2k-global-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t2k-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)D180 because last residue in template chain is (1hh8A)L193 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1hh8A 4 :VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSR T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFK 1hh8A 39 :ICFNIGCMYTILKNMTEAEKAFTRSINRDKHL T0287 86 :KVYRLL 1hh8A 72 :VAYFQR T0287 93 :SET 1hh8A 78 :GML T0287 96 :MELLHAIAENPNFLFS 1hh8A 92 :KDLKEALIQLRGNQLI T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 1hh8A 124 :LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK T0287 157 :MTDEEVNFYANLKTIEQYNDYVR 1hh8A 170 :KLYEPVVIPVGRLFRPNERQVAQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=3399 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_969269633.pdb -s /var/tmp/to_scwrl_969269633.seq -o /var/tmp/from_scwrl_969269633.pdb > /var/tmp/scwrl_969269633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969269633.pdb Number of alignments=432 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t2k-local-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t2k-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 98 :LLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1hh8A 144 :LALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=3400 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2133823503.pdb -s /var/tmp/to_scwrl_2133823503.seq -o /var/tmp/from_scwrl_2133823503.pdb > /var/tmp/scwrl_2133823503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2133823503.pdb Number of alignments=433 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t2k-local-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t2k-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 98 :LLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 1hh8A 144 :LALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3401 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_788278199.pdb -s /var/tmp/to_scwrl_788278199.seq -o /var/tmp/from_scwrl_788278199.pdb > /var/tmp/scwrl_788278199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_788278199.pdb Number of alignments=434 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-simplesw-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-simplesw-adpstyle1.a2m # found chain 1hh8A in training set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3402 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_284663579.pdb -s /var/tmp/to_scwrl_284663579.seq -o /var/tmp/from_scwrl_284663579.pdb > /var/tmp/scwrl_284663579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_284663579.pdb Number of alignments=435 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-simplesw-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-simplesw-adpstyle5.a2m # found chain 1hh8A in training set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1hh8A 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=3403 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1499518434.pdb -s /var/tmp/to_scwrl_1499518434.seq -o /var/tmp/from_scwrl_1499518434.pdb > /var/tmp/scwrl_1499518434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1499518434.pdb Number of alignments=436 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-global-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t04-global-adpstyle1.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 22 :LIE 1hh8A 3 :LVE T0287 25 :SLQENELLNTDEK 1hh8A 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1hh8A 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSI 1hh8A 105 :QLIDYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3409 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1650000616.pdb -s /var/tmp/to_scwrl_1650000616.seq -o /var/tmp/from_scwrl_1650000616.pdb > /var/tmp/scwrl_1650000616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650000616.pdb Number of alignments=437 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-global-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 Warning: unaligning (T0287)F185 because last residue in template chain is (1hh8A)L193 T0287 3 :NNM 1hh8A 3 :LVE T0287 23 :IESLQENELLNTDEK 1hh8A 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1hh8A 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 112 :KFDRSILGIFLPFFSKPIMFKMSI 1hh8A 106 :LIDYKILGLQFKLFACEVLYNIAF T0287 136 :REMDSQIELYG 1hh8A 138 :KKAEEQLALAT T0287 148 :NLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1hh8A 149 :SMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL T0287 182 :LMK 1hh8A 190 :VAQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=3417 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_977869749.pdb -s /var/tmp/to_scwrl_977869749.seq -o /var/tmp/from_scwrl_977869749.pdb > /var/tmp/scwrl_977869749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_977869749.pdb Number of alignments=438 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDKKEK 1hh8A 15 :LAADKKDWKGA T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1hh8A 26 :LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 85 :KKVYRLLESETMELLHAIAEN 1hh8A 84 :TEKYDLAIKDLKEALIQLRGN T0287 111 :SKFDRSILGIFLPFF 1hh8A 105 :QLIDYKILGLQFKLF T0287 164 :FYANLKTIEQYNDYVRDLL 1hh8A 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKF 1hh8A 150 :MKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 9 number of extra gaps= 0 total=3426 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1024354573.pdb -s /var/tmp/to_scwrl_1024354573.seq -o /var/tmp/from_scwrl_1024354573.pdb > /var/tmp/scwrl_1024354573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1024354573.pdb Number of alignments=439 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDK 1hh8A 15 :LAADKKDW T0287 20 :EKLIESLQEN 1hh8A 23 :KGALDAFSAV T0287 34 :TDEKK 1hh8A 33 :QDPHS T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 38 :RICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 13 number of extra gaps= 0 total=3439 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_492764693.pdb -s /var/tmp/to_scwrl_492764693.seq -o /var/tmp/from_scwrl_492764693.pdb > /var/tmp/scwrl_492764693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_492764693.pdb Number of alignments=440 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-local-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t04-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3440 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1884237988.pdb -s /var/tmp/to_scwrl_1884237988.seq -o /var/tmp/from_scwrl_1884237988.pdb > /var/tmp/scwrl_1884237988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1884237988.pdb Number of alignments=441 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-local-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1hh8A 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3441 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1050319244.pdb -s /var/tmp/to_scwrl_1050319244.seq -o /var/tmp/from_scwrl_1050319244.pdb > /var/tmp/scwrl_1050319244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1050319244.pdb Number of alignments=442 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQI 1hh8A 133 :KKEEWKKAEEQLALATSMKSEPRHSKIDKA T0287 47 :MHD 1hh8A 163 :MEC Number of specific fragments extracted= 2 number of extra gaps= 0 total=3443 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_200970087.pdb -s /var/tmp/to_scwrl_200970087.seq -o /var/tmp/from_scwrl_200970087.pdb > /var/tmp/scwrl_200970087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_200970087.pdb Number of alignments=443 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set T0287 24 :ESLQEN 1hh8A 8 :SLWNEG T0287 30 :ELLNTDEKKKIIDQIKT 1hh8A 15 :LAADKKDWKGALDAFSA T0287 47 :MHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 42 :NIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKE 1hh8A 159 :IDKAMEC Number of specific fragments extracted= 10 number of extra gaps= 0 total=3453 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1403831491.pdb -s /var/tmp/to_scwrl_1403831491.seq -o /var/tmp/from_scwrl_1403831491.pdb > /var/tmp/scwrl_1403831491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1403831491.pdb Number of alignments=444 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-global-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t06-global-adpstyle1.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 22 :LIE 1hh8A 3 :LVE T0287 25 :SLQENELLNTDEK 1hh8A 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1hh8A 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSI 1hh8A 105 :QLIDYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3459 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2041730150.pdb -s /var/tmp/to_scwrl_2041730150.seq -o /var/tmp/from_scwrl_2041730150.pdb > /var/tmp/scwrl_2041730150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041730150.pdb Number of alignments=445 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-global-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 Warning: unaligning (T0287)F185 because last residue in template chain is (1hh8A)L193 T0287 3 :NNM 1hh8A 3 :LVE T0287 23 :IESLQENELLNTDEK 1hh8A 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1hh8A 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 112 :KFDRSILGIFLPFFSKPIMFKMSI 1hh8A 106 :LIDYKILGLQFKLFACEVLYNIAF T0287 136 :REMDSQIELYG 1hh8A 138 :KKAEEQLALAT T0287 148 :NLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1hh8A 149 :SMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL T0287 182 :LMK 1hh8A 190 :VAQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=3467 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1952124675.pdb -s /var/tmp/to_scwrl_1952124675.seq -o /var/tmp/from_scwrl_1952124675.pdb > /var/tmp/scwrl_1952124675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1952124675.pdb Number of alignments=446 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDKKEK 1hh8A 15 :LAADKKDWKGA T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1hh8A 26 :LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 85 :KKVYRLLESETMELLHAIAEN 1hh8A 84 :TEKYDLAIKDLKEALIQLRGN T0287 111 :SKFDRSILGIFLPFF 1hh8A 105 :QLIDYKILGLQFKLF T0287 164 :FYANLKTIEQYNDYVRDLL 1hh8A 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKF 1hh8A 150 :MKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 9 number of extra gaps= 0 total=3476 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_846373502.pdb -s /var/tmp/to_scwrl_846373502.seq -o /var/tmp/from_scwrl_846373502.pdb > /var/tmp/scwrl_846373502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_846373502.pdb Number of alignments=447 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDK 1hh8A 15 :LAADKKDW T0287 20 :EKLIESLQEN 1hh8A 23 :KGALDAFSAV T0287 34 :TDEKK 1hh8A 33 :QDPHS T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 38 :RICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 13 number of extra gaps= 0 total=3489 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2100505498.pdb -s /var/tmp/to_scwrl_2100505498.seq -o /var/tmp/from_scwrl_2100505498.pdb > /var/tmp/scwrl_2100505498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2100505498.pdb Number of alignments=448 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-local-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t06-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3490 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1420584130.pdb -s /var/tmp/to_scwrl_1420584130.seq -o /var/tmp/from_scwrl_1420584130.pdb > /var/tmp/scwrl_1420584130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1420584130.pdb Number of alignments=449 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-local-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1hh8A 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3491 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_737701263.pdb -s /var/tmp/to_scwrl_737701263.seq -o /var/tmp/from_scwrl_737701263.pdb > /var/tmp/scwrl_737701263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_737701263.pdb Number of alignments=450 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQI 1hh8A 133 :KKEEWKKAEEQLALATSMKSEPRHSKIDKA T0287 47 :MHD 1hh8A 163 :MEC Number of specific fragments extracted= 2 number of extra gaps= 0 total=3493 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2024094450.pdb -s /var/tmp/to_scwrl_2024094450.seq -o /var/tmp/from_scwrl_2024094450.pdb > /var/tmp/scwrl_2024094450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2024094450.pdb Number of alignments=451 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set T0287 24 :ESLQEN 1hh8A 8 :SLWNEG T0287 30 :ELLNTDEKKKIIDQIKT 1hh8A 15 :LAADKKDWKGALDAFSA T0287 47 :MHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 42 :NIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKE 1hh8A 159 :IDKAMEC Number of specific fragments extracted= 10 number of extra gaps= 0 total=3503 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1457390557.pdb -s /var/tmp/to_scwrl_1457390557.seq -o /var/tmp/from_scwrl_1457390557.pdb > /var/tmp/scwrl_1457390557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1457390557.pdb Number of alignments=452 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-global-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t2k-global-adpstyle1.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 22 :LIE 1hh8A 3 :LVE T0287 25 :SLQENELLNTDEK 1hh8A 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1hh8A 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSI 1hh8A 105 :QLIDYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3509 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_322451751.pdb -s /var/tmp/to_scwrl_322451751.seq -o /var/tmp/from_scwrl_322451751.pdb > /var/tmp/scwrl_322451751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322451751.pdb Number of alignments=453 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-global-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 Warning: unaligning (T0287)F185 because last residue in template chain is (1hh8A)L193 T0287 3 :NNM 1hh8A 3 :LVE T0287 23 :IESLQENELLNTDEK 1hh8A 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1hh8A 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 112 :KFDRSILGIFLPFFSKPIMFKMSI 1hh8A 106 :LIDYKILGLQFKLFACEVLYNIAF T0287 136 :REMDSQIELYG 1hh8A 138 :KKAEEQLALAT T0287 148 :NLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1hh8A 149 :SMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL T0287 182 :LMK 1hh8A 190 :VAQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=3517 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_208910183.pdb -s /var/tmp/to_scwrl_208910183.seq -o /var/tmp/from_scwrl_208910183.pdb > /var/tmp/scwrl_208910183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_208910183.pdb Number of alignments=454 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NNMR 1hh8A 3 :LVEA T0287 7 :KLFS 1hh8A 8 :SLWN T0287 11 :MIADSKDKKEKL 1hh8A 15 :LAADKKDWKGAL T0287 24 :ESLQE 1hh8A 27 :DAFSA T0287 33 :NTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1hh8A 32 :VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIKSIGVDKFKKVYRLL 1hh8A 75 :FQRGMLYYQTEKYDLAIKDL T0287 99 :LHAIAENPNF 1hh8A 95 :KEALIQLRGN T0287 111 :SKFDRSILGIFLPFF 1hh8A 105 :QLIDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLL 1hh8A 128 :AFMYAKKEEWKKAEEQLALAT T0287 183 :MK 1hh8A 150 :MK T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 11 number of extra gaps= 0 total=3528 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1515380944.pdb -s /var/tmp/to_scwrl_1515380944.seq -o /var/tmp/from_scwrl_1515380944.pdb > /var/tmp/scwrl_1515380944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1515380944.pdb Number of alignments=455 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDK 1hh8A 15 :LAADKKDW T0287 20 :EKLIESLQEN 1hh8A 23 :KGALDAFSAV T0287 34 :TDEKK 1hh8A 33 :QDPHS T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 38 :RICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 13 number of extra gaps= 0 total=3541 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_727648293.pdb -s /var/tmp/to_scwrl_727648293.seq -o /var/tmp/from_scwrl_727648293.pdb > /var/tmp/scwrl_727648293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_727648293.pdb Number of alignments=456 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-local-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t2k-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3542 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_335733231.pdb -s /var/tmp/to_scwrl_335733231.seq -o /var/tmp/from_scwrl_335733231.pdb > /var/tmp/scwrl_335733231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_335733231.pdb Number of alignments=457 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-local-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1hh8A 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3543 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1601643468.pdb -s /var/tmp/to_scwrl_1601643468.seq -o /var/tmp/from_scwrl_1601643468.pdb > /var/tmp/scwrl_1601643468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1601643468.pdb Number of alignments=458 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3544 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set T0287 24 :ESLQEN 1hh8A 8 :SLWNEG T0287 30 :ELLNTDEKKKIIDQIKT 1hh8A 15 :LAADKKDWKGALDAFSA T0287 47 :MHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 42 :NIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKE 1hh8A 159 :IDKAMEC Number of specific fragments extracted= 10 number of extra gaps= 0 total=3554 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_763336916.pdb -s /var/tmp/to_scwrl_763336916.seq -o /var/tmp/from_scwrl_763336916.pdb > /var/tmp/scwrl_763336916.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_763336916.pdb Number of alignments=459 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-muscle.a2m.gz # 1hh8A read from T0287-1hh8A-t04-muscle.a2m.gz # found chain 1hh8A in training set Warning: unaligning (T0287)D17 because first residue in template chain is (1hh8A)S2 T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1hh8A 3 :LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR T0287 118 :LGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 1hh8A 117 :KLFACEVLYNIAFMYAKKEEWKKAEEQLALATS T0287 156 :VMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 150 :MKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3557 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_996570667.pdb -s /var/tmp/to_scwrl_996570667.seq -o /var/tmp/from_scwrl_996570667.pdb > /var/tmp/scwrl_996570667.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996570667.pdb Number of alignments=460 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-muscle.a2m.gz # 1hh8A read from T0287-1hh8A-t06-muscle.a2m.gz # found chain 1hh8A in training set T0287 1 :MSNNMRKLFSM 1hh8A 2 :SLVEAISLWNE T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRS 1hh8A 13 :GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 102 :RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIP Number of specific fragments extracted= 3 number of extra gaps= 0 total=3560 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_331255185.pdb -s /var/tmp/to_scwrl_331255185.seq -o /var/tmp/from_scwrl_331255185.pdb > /var/tmp/scwrl_331255185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_331255185.pdb Number of alignments=461 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-muscle.a2m.gz # 1hh8A read from T0287-1hh8A-t2k-muscle.a2m.gz # found chain 1hh8A in training set Warning: unaligning (T0287)D17 because first residue in template chain is (1hh8A)S2 T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1hh8A 3 :LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD T0287 106 :PNFLFSKFDRSILGIFLPFFSKPI 1hh8A 68 :KHLAVAYFQRGMLYYQTEKYDLAI T0287 130 :MFKMSIREMDSQIEL 1hh8A 93 :DLKEALIQLRGNQLI T0287 145 :YGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 124 :LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3564 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1553297098.pdb -s /var/tmp/to_scwrl_1553297098.seq -o /var/tmp/from_scwrl_1553297098.pdb > /var/tmp/scwrl_1553297098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553297098.pdb Number of alignments=462 # command:# Prefix for input files set to 1hzgA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-fssp-global-adpstyle5.a2m # 1hzgA read from 1hzgA-T0287-fssp-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MSN 1hzgA 720 :SIE T0287 4 :NMRKLFSMI 1hzgA 728 :NFQKLSRGN T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIID 1hzgA 760 :AANADEQQPLFFYIKKDRFDNHGYDQYFYD T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 859 :TSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLV T0287 173 :QYNDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 983 :DGNVVVRSLSESYSLNADASEISVLKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=3571 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1965840300.pdb -s /var/tmp/to_scwrl_1965840300.seq -o /var/tmp/from_scwrl_1965840300.pdb > /var/tmp/scwrl_1965840300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1965840300.pdb Number of alignments=463 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-fssp-local-adpstyle5.a2m # 1hzgA read from 1hzgA-T0287-fssp-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 870 :VARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQ 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVR T0287 174 :YNDYVRDLLMKFD 1hzgA 984 :GNVVVRSLSESYS Number of specific fragments extracted= 4 number of extra gaps= 0 total=3575 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_317595041.pdb -s /var/tmp/to_scwrl_317595041.seq -o /var/tmp/from_scwrl_317595041.pdb > /var/tmp/scwrl_317595041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_317595041.pdb Number of alignments=464 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-t2k-global-adpstyle1.a2m # 1hzgA read from 1hzgA-T0287-t2k-global-adpstyle1.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIID 1hzgA 760 :AANADEQQPLFFYIKKDRFDNHGYDQYFYDNTVGPNGIPTLN T0287 43 :QIKTMHDFFKQMHTNKGALDK 1hzgA 806 :EIPSDSSSLGSTYWKKYNLTN T0287 64 :VLRNYMKDYRAVIKS 1hzgA 846 :ALEEVQEGKPVIITS T0287 79 :IGVDKFKKVYRLLESETMELLHAIAENPNFL 1hzgA 895 :TGVKKAVEVLELLTKEPIPRVEGIMSNDFLV T0287 110 :FSK 1hzgA 928 :LSE T0287 113 :FDRSI 1hzgA 932 :FEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRVDGNVVVRSLSESYSLNADASEISVL Number of specific fragments extracted= 7 number of extra gaps= 0 total=3582 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_194091651.pdb -s /var/tmp/to_scwrl_194091651.seq -o /var/tmp/from_scwrl_194091651.pdb > /var/tmp/scwrl_194091651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194091651.pdb Number of alignments=465 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-t2k-global-adpstyle5.a2m # 1hzgA read from 1hzgA-T0287-t2k-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFS 1hzgA 725 :SKSNFQKLSR T0287 11 :MIA 1hzgA 745 :SIS T0287 14 :DSKDKKEK 1hzgA 759 :EAANADEQ T0287 22 :LIESLQENELLNTDEKK 1hzgA 769 :LFFYIKKDRFDNHGYDQ T0287 39 :KIIDQIKTMHDFF 1hzgA 795 :NGIPTLNTYTGEI T0287 52 :KQMHTNKGALDK 1hzgA 815 :GSTYWKKYNLTN T0287 64 :VLRNYMKDYRAV 1hzgA 846 :ALEEVQEGKPVI T0287 76 :IKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1hzgA 892 :TSTTGVKKAVEVLELLTKEPIPRVEGIMSNDFLV T0287 110 :FSK 1hzgA 928 :LSE T0287 113 :FDRSI 1hzgA 932 :FEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEK 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRVDGNVVVRSLSESYSL T0287 190 :YMKEKGVQN 1hzgA 1000 :DASEISVLK Number of specific fragments extracted= 12 number of extra gaps= 0 total=3594 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_103020232.pdb -s /var/tmp/to_scwrl_103020232.seq -o /var/tmp/from_scwrl_103020232.pdb > /var/tmp/scwrl_103020232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_103020232.pdb Number of alignments=466 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-t2k-local-adpstyle1.a2m # 1hzgA read from 1hzgA-T0287-t2k-local-adpstyle1.a2m # found chain 1hzgA in template set T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPNFL 1hzgA 896 :GVKKAVEVLELLTKEPIPRVEGIMSNDFLV T0287 110 :FSK 1hzgA 928 :LSE T0287 113 :FDRSIL 1hzgA 932 :FEDSLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=3597 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1817113475.pdb -s /var/tmp/to_scwrl_1817113475.seq -o /var/tmp/from_scwrl_1817113475.pdb > /var/tmp/scwrl_1817113475.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1817113475.pdb Number of alignments=467 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-t2k-local-adpstyle5.a2m # 1hzgA read from 1hzgA-T0287-t2k-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 79 :IGVDKFKKVYRLLESETMELLHAIAENPNFL 1hzgA 895 :TGVKKAVEVLELLTKEPIPRVEGIMSNDFLV T0287 110 :FSK 1hzgA 928 :LSE T0287 113 :FDRSILG 1hzgA 932 :FEDSLIT T0287 124 :FFSKPIMFKMSIR 1hzgA 939 :YSSSEKKPDSQIT Number of specific fragments extracted= 4 number of extra gaps= 0 total=3601 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1844092267.pdb -s /var/tmp/to_scwrl_1844092267.seq -o /var/tmp/from_scwrl_1844092267.pdb > /var/tmp/scwrl_1844092267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1844092267.pdb Number of alignments=468 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-simplesw-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-simplesw-adpstyle1.a2m # found chain 1hzgA in template set T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNF 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=3604 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1080889980.pdb -s /var/tmp/to_scwrl_1080889980.seq -o /var/tmp/from_scwrl_1080889980.pdb > /var/tmp/scwrl_1080889980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1080889980.pdb Number of alignments=469 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-simplesw-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-simplesw-adpstyle5.a2m # found chain 1hzgA in template set T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 868 :TIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKT 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3607 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_693984402.pdb -s /var/tmp/to_scwrl_693984402.seq -o /var/tmp/from_scwrl_693984402.pdb > /var/tmp/scwrl_693984402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_693984402.pdb Number of alignments=470 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-global-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t04-global-adpstyle1.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMI 1hzgA 747 :SSTRQRAIYPYF T0287 13 :ADSKDKKEKLIESLQENELLN 1hzgA 760 :AANADEQQPLFFYIKKDRFDN T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 850 :VQEGKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 985 :NVVVRSLSESYSLNADASEISVLKV Number of specific fragments extracted= 6 number of extra gaps= 0 total=3613 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_189373313.pdb -s /var/tmp/to_scwrl_189373313.seq -o /var/tmp/from_scwrl_189373313.pdb > /var/tmp/scwrl_189373313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_189373313.pdb Number of alignments=471 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-global-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 2 :SNNMRKL 1hzgA 726 :KSNFQKL T0287 9 :FS 1hzgA 755 :YP T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 1hzgA 758 :FEAANADEQQPLFFYIKKDRFDNHGYDQYFYDN T0287 44 :IKTMHDF 1hzgA 797 :IPTLNTY T0287 51 :FKQM 1hzgA 819 :WKKY T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQN 1hzgA 985 :NVVVRSLSESYSLNADASEISVLK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3622 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_817644323.pdb -s /var/tmp/to_scwrl_817644323.seq -o /var/tmp/from_scwrl_817644323.pdb > /var/tmp/scwrl_817644323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_817644323.pdb Number of alignments=472 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MS 1hzgA 720 :SI T0287 24 :ES 1hzgA 722 :ES T0287 56 :TNKGALDKVLRNYM 1hzgA 724 :TSKSNFQKLSRGNI T0287 82 :DKFK 1hzgA 738 :DVLK T0287 105 :NPNFLFSKFDRSILGIFLP 1hzgA 742 :GRGSISSTRQRAIYPYFEA T0287 126 :SKPIMFKMSIREMDSQ 1hzgA 766 :QQPLFFYIKKDRFDNH T0287 145 :Y 1hzgA 788 :Y T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 794 :PNGIPTLNTYTGEIPSDSSSLGSTYWKKYN T0287 187 :L 1hzgA 824 :L Number of specific fragments extracted= 9 number of extra gaps= 0 total=3631 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1744303645.pdb -s /var/tmp/to_scwrl_1744303645.seq -o /var/tmp/from_scwrl_1744303645.pdb > /var/tmp/scwrl_1744303645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744303645.pdb Number of alignments=473 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :M 1hzgA 720 :S T0287 15 :SKDKKEKLIESLQENEL 1hzgA 721 :IESTSKSNFQKLSRGNI T0287 81 :VDKFKK 1hzgA 775 :KDRFDN T0287 105 :NPNFLFSKFDRSILGIFLPFF 1hzgA 784 :DQYFYDNTVGPNGIPTLNTYT T0287 131 :FKMSIREMDSQ 1hzgA 843 :IKIALEEVQEG T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 877 :IYKVHTGTTKSLAGFTSTTGVKKAV T0287 177 :YVRDLLMKFD 1hzgA 902 :EVLELLTKEP T0287 187 :LEKYMKEK 1hzgA 924 :LVDYLSEN Number of specific fragments extracted= 8 number of extra gaps= 0 total=3639 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_390343400.pdb -s /var/tmp/to_scwrl_390343400.seq -o /var/tmp/from_scwrl_390343400.pdb > /var/tmp/scwrl_390343400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390343400.pdb Number of alignments=474 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-local-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t04-local-adpstyle1.a2m # found chain 1hzgA in template set T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNF 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=3642 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_73992167.pdb -s /var/tmp/to_scwrl_73992167.seq -o /var/tmp/from_scwrl_73992167.pdb > /var/tmp/scwrl_73992167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_73992167.pdb Number of alignments=475 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-local-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 853 :GKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3645 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1638550148.pdb -s /var/tmp/to_scwrl_1638550148.seq -o /var/tmp/from_scwrl_1638550148.pdb > /var/tmp/scwrl_1638550148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1638550148.pdb Number of alignments=476 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3645 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 92 :ESETMELLHAIAE 1hzgA 722 :ESTSKSNFQKLSR T0287 105 :NPNFLFSKF 1hzgA 736 :NIDVLKGRG T0287 114 :DRSILGIFLPF 1hzgA 748 :STRQRAIYPYF T0287 125 :FSKPIMFKMSIREMDSQ 1hzgA 765 :EQQPLFFYIKKDRFDNH T0287 143 :ELYGTNLPLLKLFV 1hzgA 791 :TVGPNGIPTLNTYT Number of specific fragments extracted= 5 number of extra gaps= 0 total=3650 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_194984428.pdb -s /var/tmp/to_scwrl_194984428.seq -o /var/tmp/from_scwrl_194984428.pdb > /var/tmp/scwrl_194984428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194984428.pdb Number of alignments=477 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-global-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t06-global-adpstyle1.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMI 1hzgA 747 :SSTRQRAIYPYF T0287 13 :ADSKDKKEKLIESLQENELLN 1hzgA 760 :AANADEQQPLFFYIKKDRFDN T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 850 :VQEGKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 985 :NVVVRSLSESYSLNADASEISVLKV Number of specific fragments extracted= 6 number of extra gaps= 0 total=3656 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_920365669.pdb -s /var/tmp/to_scwrl_920365669.seq -o /var/tmp/from_scwrl_920365669.pdb > /var/tmp/scwrl_920365669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_920365669.pdb Number of alignments=478 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-global-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 2 :SNNMRKL 1hzgA 726 :KSNFQKL T0287 9 :FS 1hzgA 755 :YP T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 1hzgA 758 :FEAANADEQQPLFFYIKKDRFDNHGYDQYFYDN T0287 44 :IKTMHDF 1hzgA 797 :IPTLNTY T0287 51 :FKQM 1hzgA 819 :WKKY T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQN 1hzgA 985 :NVVVRSLSESYSLNADASEISVLK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3665 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1591572000.pdb -s /var/tmp/to_scwrl_1591572000.seq -o /var/tmp/from_scwrl_1591572000.pdb > /var/tmp/scwrl_1591572000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1591572000.pdb Number of alignments=479 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MS 1hzgA 720 :SI T0287 24 :ES 1hzgA 722 :ES T0287 56 :TNKGALDKVLRNYM 1hzgA 724 :TSKSNFQKLSRGNI T0287 82 :DKFK 1hzgA 738 :DVLK T0287 105 :NPNFLFSKFDRSILGIFLP 1hzgA 742 :GRGSISSTRQRAIYPYFEA T0287 126 :SKPIMFKMSIREMDSQ 1hzgA 766 :QQPLFFYIKKDRFDNH T0287 145 :Y 1hzgA 788 :Y T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 794 :PNGIPTLNTYTGEIPSDSSSLGSTYWKKYN T0287 187 :L 1hzgA 824 :L Number of specific fragments extracted= 9 number of extra gaps= 0 total=3674 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1615568558.pdb -s /var/tmp/to_scwrl_1615568558.seq -o /var/tmp/from_scwrl_1615568558.pdb > /var/tmp/scwrl_1615568558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1615568558.pdb Number of alignments=480 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :M 1hzgA 720 :S T0287 15 :SKDKKEKLIESLQENEL 1hzgA 721 :IESTSKSNFQKLSRGNI T0287 81 :VDKFKK 1hzgA 775 :KDRFDN T0287 105 :NPNFLFSKFDRSILGIFLPFF 1hzgA 784 :DQYFYDNTVGPNGIPTLNTYT T0287 131 :FKMSIREMDSQ 1hzgA 843 :IKIALEEVQEG T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 877 :IYKVHTGTTKSLAGFTSTTGVKKAV T0287 177 :YVRDLLMKFD 1hzgA 902 :EVLELLTKEP T0287 187 :LEKYMKEK 1hzgA 924 :LVDYLSEN Number of specific fragments extracted= 8 number of extra gaps= 0 total=3682 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1658066932.pdb -s /var/tmp/to_scwrl_1658066932.seq -o /var/tmp/from_scwrl_1658066932.pdb > /var/tmp/scwrl_1658066932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1658066932.pdb Number of alignments=481 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-local-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t06-local-adpstyle1.a2m # found chain 1hzgA in template set T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNF 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=3685 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1468182803.pdb -s /var/tmp/to_scwrl_1468182803.seq -o /var/tmp/from_scwrl_1468182803.pdb > /var/tmp/scwrl_1468182803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1468182803.pdb Number of alignments=482 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-local-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 853 :GKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3688 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_925475469.pdb -s /var/tmp/to_scwrl_925475469.seq -o /var/tmp/from_scwrl_925475469.pdb > /var/tmp/scwrl_925475469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925475469.pdb Number of alignments=483 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3688 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 92 :ESETMELLHAIAE 1hzgA 722 :ESTSKSNFQKLSR T0287 105 :NPNFLFSKF 1hzgA 736 :NIDVLKGRG T0287 114 :DRSILGIFLPF 1hzgA 748 :STRQRAIYPYF T0287 125 :FSKPIMFKMSIREMDSQ 1hzgA 765 :EQQPLFFYIKKDRFDNH T0287 143 :ELYGTNLPLLKLFV 1hzgA 791 :TVGPNGIPTLNTYT Number of specific fragments extracted= 5 number of extra gaps= 0 total=3693 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1980518683.pdb -s /var/tmp/to_scwrl_1980518683.seq -o /var/tmp/from_scwrl_1980518683.pdb > /var/tmp/scwrl_1980518683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1980518683.pdb Number of alignments=484 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-global-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t2k-global-adpstyle1.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMI 1hzgA 747 :SSTRQRAIYPYF T0287 13 :ADSKDKKEKLIESLQENELLN 1hzgA 760 :AANADEQQPLFFYIKKDRFDN T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 850 :VQEGKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 985 :NVVVRSLSESYSLNADASEISVLKV Number of specific fragments extracted= 6 number of extra gaps= 0 total=3699 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1677092986.pdb -s /var/tmp/to_scwrl_1677092986.seq -o /var/tmp/from_scwrl_1677092986.pdb > /var/tmp/scwrl_1677092986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1677092986.pdb Number of alignments=485 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-global-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 2 :SNNMRKL 1hzgA 726 :KSNFQKL T0287 9 :FS 1hzgA 755 :YP T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 1hzgA 758 :FEAANADEQQPLFFYIKKDRFDNHGYDQYFYDN T0287 44 :IKTMHDF 1hzgA 797 :IPTLNTY T0287 51 :FKQM 1hzgA 819 :WKKY T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQN 1hzgA 985 :NVVVRSLSESYSLNADASEISVLK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3708 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_293372766.pdb -s /var/tmp/to_scwrl_293372766.seq -o /var/tmp/from_scwrl_293372766.pdb > /var/tmp/scwrl_293372766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_293372766.pdb Number of alignments=486 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MSNNMR 1hzgA 720 :SIESTS T0287 58 :KGALDKVLRNY 1hzgA 726 :KSNFQKLSRGN T0287 81 :VDKFK 1hzgA 737 :IDVLK T0287 105 :NPNFLFSKFDRSILGIFLPF 1hzgA 742 :GRGSISSTRQRAIYPYFEAA T0287 126 :SKPIMFKMSIREMDSQ 1hzgA 766 :QQPLFFYIKKDRFDNH T0287 142 :IELYGTNLPLLKLFVMTDEEVNFYANL 1hzgA 788 :YDNTVGPNGIPTLNTYTGEIPSDSSSL T0287 169 :KTIEQYN 1hzgA 817 :TYWKKYN T0287 187 :L 1hzgA 824 :L Number of specific fragments extracted= 8 number of extra gaps= 0 total=3716 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_560683329.pdb -s /var/tmp/to_scwrl_560683329.seq -o /var/tmp/from_scwrl_560683329.pdb > /var/tmp/scwrl_560683329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_560683329.pdb Number of alignments=487 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :M 1hzgA 720 :S T0287 15 :SKDKKEKLIESLQENEL 1hzgA 721 :IESTSKSNFQKLSRGNI T0287 81 :VDKFKK 1hzgA 775 :KDRFDN T0287 105 :NPNFLFSKFDRSILGIFLPFF 1hzgA 784 :DQYFYDNTVGPNGIPTLNTYT T0287 131 :FKMSIREMDSQ 1hzgA 843 :IKIALEEVQEG T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 877 :IYKVHTGTTKSLAGFTSTTGVKKAV T0287 177 :YVRDLLMKFD 1hzgA 902 :EVLELLTKEP T0287 187 :LEKYMKEK 1hzgA 924 :LVDYLSEN Number of specific fragments extracted= 8 number of extra gaps= 0 total=3724 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2012826217.pdb -s /var/tmp/to_scwrl_2012826217.seq -o /var/tmp/from_scwrl_2012826217.pdb > /var/tmp/scwrl_2012826217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012826217.pdb Number of alignments=488 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-local-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t2k-local-adpstyle1.a2m # found chain 1hzgA in template set T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNF 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=3727 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1895016235.pdb -s /var/tmp/to_scwrl_1895016235.seq -o /var/tmp/from_scwrl_1895016235.pdb > /var/tmp/scwrl_1895016235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1895016235.pdb Number of alignments=489 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-local-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 853 :GKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3730 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1324020244.pdb -s /var/tmp/to_scwrl_1324020244.seq -o /var/tmp/from_scwrl_1324020244.pdb > /var/tmp/scwrl_1324020244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324020244.pdb Number of alignments=490 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set T0287 130 :MFKMSIREMDSQIELYGTNLPLLKLFV 1hzgA 938 :TYSSSEKKPDSQITIIRDNVSVFPYFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3731 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_861913238.pdb -s /var/tmp/to_scwrl_861913238.seq -o /var/tmp/from_scwrl_861913238.pdb > /var/tmp/scwrl_861913238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_861913238.pdb Number of alignments=491 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 92 :ESETMELLHAIAE 1hzgA 722 :ESTSKSNFQKLSR T0287 105 :NPNFLFSKF 1hzgA 736 :NIDVLKGRG T0287 114 :DRSILGIFLPF 1hzgA 748 :STRQRAIYPYF T0287 125 :FSKPIMFKMSIREMDSQ 1hzgA 765 :EQQPLFFYIKKDRFDNH T0287 143 :ELYGTNLPLLKLFV 1hzgA 791 :TVGPNGIPTLNTYT Number of specific fragments extracted= 5 number of extra gaps= 0 total=3736 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_78787773.pdb -s /var/tmp/to_scwrl_78787773.seq -o /var/tmp/from_scwrl_78787773.pdb > /var/tmp/scwrl_78787773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_78787773.pdb Number of alignments=492 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-muscle.a2m.gz # 1hzgA read from T0287-1hzgA-t2k-muscle.a2m.gz # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQEN 1hzgA 725 :SKSNFQKLSRGNIDVLKGRGSISSTRQRA T0287 30 :ELLNTDEKKKI 1hzgA 759 :EAANADEQQPL T0287 43 :QIKTMHDFFKQMHTNKGALDKV 1hzgA 770 :FFYIKKDRFDNHGYDQYFYDNT T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMEL 1hzgA 800 :LNTYTGEIPSDSSSLGSTYWKKYNLTNETSIIRV T0287 99 :LHAIAENPNFLFS 1hzgA 847 :LEEVQEGKPVIIT T0287 114 :DRSILGIFLPFFSKPIMFKMSIREMDSQIELY 1hzgA 860 :SGNLSGSTTIVARKEGYIYKVHTGTTKSLAGF T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1hzgA 896 :GVKKAVEVLELLTKEPIPRVEGIMSNDFLVDYLSENFED T0287 186 :DLEKYMKEKGVQNA 1hzgA 935 :SLITYSSSEKKPDS Number of specific fragments extracted= 8 number of extra gaps= 0 total=3744 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_729833697.pdb -s /var/tmp/to_scwrl_729833697.seq -o /var/tmp/from_scwrl_729833697.pdb > /var/tmp/scwrl_729833697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_729833697.pdb Number of alignments=493 # command:# Prefix for input files set to 1josA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t04-global-adpstyle1.a2m # 1josA read from 1josA-T0287-t04-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)F121 because last residue in template chain is (1josA)M106 T0287 16 :KDKKEKLIESLQENELLN 1josA 8 :SDRVAQEIQKEIAVILQR T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1josA 26 :EVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMR T0287 102 :IAENPNFLF 1josA 88 :LRIVPEIRF T0287 112 :KFDRSILGI 1josA 97 :IYDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3748 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_680269891.pdb -s /var/tmp/to_scwrl_680269891.seq -o /var/tmp/from_scwrl_680269891.pdb > /var/tmp/scwrl_680269891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_680269891.pdb Number of alignments=494 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t04-global-adpstyle5.a2m # 1josA read from 1josA-T0287-t04-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)F121 because last residue in template chain is (1josA)M106 T0287 19 :K 1josA 8 :S T0287 20 :EKLIESLQE 1josA 17 :KEIAVILQR T0287 30 :ELLNTDEKKKIIDQIKTMHDF 1josA 26 :EVKDPRIGMVTVSDVEVSSDL T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1josA 47 :SYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIV T0287 112 :KFDRSILGI 1josA 97 :IYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=3753 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_396382815.pdb -s /var/tmp/to_scwrl_396382815.seq -o /var/tmp/from_scwrl_396382815.pdb > /var/tmp/scwrl_396382815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_396382815.pdb Number of alignments=495 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t04-local-adpstyle1.a2m # 1josA read from 1josA-T0287-t04-local-adpstyle1.a2m # found chain 1josA in training set T0287 7 :KLFSMIADSKDKK 1josA 50 :KIFVTFLFDHDEM T0287 20 :EKLIESLQENE 1josA 65 :EQGMKGLEKAS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3755 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_923925348.pdb -s /var/tmp/to_scwrl_923925348.seq -o /var/tmp/from_scwrl_923925348.pdb > /var/tmp/scwrl_923925348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923925348.pdb Number of alignments=496 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t04-local-adpstyle5.a2m # 1josA read from 1josA-T0287-t04-local-adpstyle5.a2m # found chain 1josA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3755 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t06-global-adpstyle1.a2m # 1josA read from 1josA-T0287-t06-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)F121 because last residue in template chain is (1josA)M106 T0287 16 :KDKKEKLIESLQENELLN 1josA 8 :SDRVAQEIQKEIAVILQR T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1josA 26 :EVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMR T0287 102 :IAENPNFLFS 1josA 88 :LRIVPEIRFI T0287 113 :FDRSILGI 1josA 98 :YDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3759 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_783290123.pdb -s /var/tmp/to_scwrl_783290123.seq -o /var/tmp/from_scwrl_783290123.pdb > /var/tmp/scwrl_783290123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_783290123.pdb Number of alignments=497 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t06-global-adpstyle5.a2m # 1josA read from 1josA-T0287-t06-global-adpstyle5.a2m # found chain 1josA in training set T0287 19 :KEKLIESLQE 1josA 8 :SDRVAQEIQK T0287 60 :ALDKVLRNYMKDYRA 1josA 18 :EIAVILQREVKDPRI T0287 77 :KSIGVDKFK 1josA 33 :GMVTVSDVE T0287 114 :DRSILGIFLPFFSKP 1josA 45 :DLSYAKIFVTFLFDH T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLK 1josA 60 :DEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3764 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_66012643.pdb -s /var/tmp/to_scwrl_66012643.seq -o /var/tmp/from_scwrl_66012643.pdb > /var/tmp/scwrl_66012643.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66012643.pdb Number of alignments=498 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t06-local-adpstyle1.a2m # 1josA read from 1josA-T0287-t06-local-adpstyle1.a2m # found chain 1josA in training set T0287 148 :NLPLLKLFVMT 1josA 45 :DLSYAKIFVTF T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1josA 59 :HDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3766 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_620533968.pdb -s /var/tmp/to_scwrl_620533968.seq -o /var/tmp/from_scwrl_620533968.pdb > /var/tmp/scwrl_620533968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620533968.pdb Number of alignments=499 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t06-local-adpstyle5.a2m # 1josA read from 1josA-T0287-t06-local-adpstyle5.a2m # found chain 1josA in training set T0287 152 :LKLFVMT 1josA 49 :AKIFVTF T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1josA 59 :HDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3768 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1864180103.pdb -s /var/tmp/to_scwrl_1864180103.seq -o /var/tmp/from_scwrl_1864180103.pdb > /var/tmp/scwrl_1864180103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864180103.pdb Number of alignments=500 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t2k-global-adpstyle1.a2m # 1josA read from 1josA-T0287-t2k-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)I120 because last residue in template chain is (1josA)M106 T0287 1 :MSNNMRKLFSMIADSK 1josA 11 :VAQEIQKEIAVILQRE T0287 40 :IIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1josA 27 :VKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMR T0287 102 :IAENPNFLFSKFDRSILG 1josA 88 :LRIVPEIRFIYDQSLVEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3771 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_759997045.pdb -s /var/tmp/to_scwrl_759997045.seq -o /var/tmp/from_scwrl_759997045.pdb > /var/tmp/scwrl_759997045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759997045.pdb Number of alignments=501 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t2k-global-adpstyle5.a2m # 1josA read from 1josA-T0287-t2k-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)I120 because last residue in template chain is (1josA)M106 T0287 2 :SN 1josA 8 :SD T0287 4 :NMRKLFSMIA 1josA 14 :EIQKEIAVIL T0287 15 :SK 1josA 25 :RE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1josA 33 :GMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMR T0287 102 :IAENPNFLFSKFDRSILG 1josA 88 :LRIVPEIRFIYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=3776 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_809907281.pdb -s /var/tmp/to_scwrl_809907281.seq -o /var/tmp/from_scwrl_809907281.pdb > /var/tmp/scwrl_809907281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_809907281.pdb Number of alignments=502 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t2k-local-adpstyle1.a2m # 1josA read from 1josA-T0287-t2k-local-adpstyle1.a2m # found chain 1josA in training set T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3777 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_534340779.pdb -s /var/tmp/to_scwrl_534340779.seq -o /var/tmp/from_scwrl_534340779.pdb > /var/tmp/scwrl_534340779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_534340779.pdb Number of alignments=503 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t2k-local-adpstyle5.a2m # 1josA read from 1josA-T0287-t2k-local-adpstyle5.a2m # found chain 1josA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3777 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-simplesw-adpstyle1.a2m # 1josA read from T0287-1josA-simplesw-adpstyle1.a2m # found chain 1josA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 55 :FLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3778 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_356817044.pdb -s /var/tmp/to_scwrl_356817044.seq -o /var/tmp/from_scwrl_356817044.pdb > /var/tmp/scwrl_356817044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_356817044.pdb Number of alignments=504 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-simplesw-adpstyle5.a2m # 1josA read from T0287-1josA-simplesw-adpstyle5.a2m # found chain 1josA in training set T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 51 :IFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3779 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1200250680.pdb -s /var/tmp/to_scwrl_1200250680.seq -o /var/tmp/from_scwrl_1200250680.pdb > /var/tmp/scwrl_1200250680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200250680.pdb Number of alignments=505 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-global-adpstyle1.a2m # 1josA read from T0287-1josA-t04-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIADSKDKKEKLIE 1josA 8 :SDRVAQEIQKEIAVILQ T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 25 :REVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3783 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_608332946.pdb -s /var/tmp/to_scwrl_608332946.seq -o /var/tmp/from_scwrl_608332946.pdb > /var/tmp/scwrl_608332946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_608332946.pdb Number of alignments=506 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-global-adpstyle5.a2m # 1josA read from T0287-1josA-t04-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIA 1josA 8 :SDRVAQ T0287 15 :S 1josA 14 :E T0287 19 :KEKLIESLQENELLNTDEKKKIIDQ 1josA 15 :IQKEIAVILQREVKDPRIGMVTVSD T0287 53 :QMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 40 :VEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=3789 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1995367192.pdb -s /var/tmp/to_scwrl_1995367192.seq -o /var/tmp/from_scwrl_1995367192.pdb > /var/tmp/scwrl_1995367192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1995367192.pdb Number of alignments=507 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNY 1josA 8 :SDRVAQEI T0287 92 :ESETMELLHAIAENPNFL 1josA 16 :QKEIAVILQREVKDPRIG T0287 127 :KPIM 1josA 34 :MVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEKGV 1josA 85 :AMRLRIV Number of specific fragments extracted= 7 number of extra gaps= 0 total=3796 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1395235108.pdb -s /var/tmp/to_scwrl_1395235108.seq -o /var/tmp/from_scwrl_1395235108.pdb > /var/tmp/scwrl_1395235108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1395235108.pdb Number of alignments=508 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNYMKDYRA 1josA 8 :SDRVAQEIQKEIAV T0287 98 :LLHAIAENPNF 1josA 22 :ILQREVKDPRI T0287 126 :SKPIM 1josA 33 :GMVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEK 1josA 85 :AMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3803 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1528698615.pdb -s /var/tmp/to_scwrl_1528698615.seq -o /var/tmp/from_scwrl_1528698615.pdb > /var/tmp/scwrl_1528698615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1528698615.pdb Number of alignments=509 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-local-adpstyle1.a2m # 1josA read from T0287-1josA-t04-local-adpstyle1.a2m # found chain 1josA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 55 :FLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3804 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1439455545.pdb -s /var/tmp/to_scwrl_1439455545.seq -o /var/tmp/from_scwrl_1439455545.pdb > /var/tmp/scwrl_1439455545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1439455545.pdb Number of alignments=510 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-local-adpstyle5.a2m # 1josA read from T0287-1josA-t04-local-adpstyle5.a2m # found chain 1josA in training set T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 50 :KIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3805 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_863320020.pdb -s /var/tmp/to_scwrl_863320020.seq -o /var/tmp/from_scwrl_863320020.pdb > /var/tmp/scwrl_863320020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_863320020.pdb Number of alignments=511 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFLF 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIGM T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3810 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1039281901.pdb -s /var/tmp/to_scwrl_1039281901.seq -o /var/tmp/from_scwrl_1039281901.pdb > /var/tmp/scwrl_1039281901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039281901.pdb Number of alignments=512 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFL 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIG T0287 127 :K 1josA 34 :M T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=3816 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_760154702.pdb -s /var/tmp/to_scwrl_760154702.seq -o /var/tmp/from_scwrl_760154702.pdb > /var/tmp/scwrl_760154702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_760154702.pdb Number of alignments=513 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-global-adpstyle1.a2m # 1josA read from T0287-1josA-t06-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIADSKDKKEKLIE 1josA 8 :SDRVAQEIQKEIAVILQ T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 25 :REVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3820 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1788795488.pdb -s /var/tmp/to_scwrl_1788795488.seq -o /var/tmp/from_scwrl_1788795488.pdb > /var/tmp/scwrl_1788795488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1788795488.pdb Number of alignments=514 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-global-adpstyle5.a2m # 1josA read from T0287-1josA-t06-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIA 1josA 8 :SDRVAQ T0287 15 :S 1josA 14 :E T0287 19 :KEKLIESLQENELLNTDEKKKIIDQ 1josA 15 :IQKEIAVILQREVKDPRIGMVTVSD T0287 53 :QMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 40 :VEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=3826 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_872316937.pdb -s /var/tmp/to_scwrl_872316937.seq -o /var/tmp/from_scwrl_872316937.pdb > /var/tmp/scwrl_872316937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_872316937.pdb Number of alignments=515 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNY 1josA 8 :SDRVAQEI T0287 92 :ESETMELLHAIAENPNFL 1josA 16 :QKEIAVILQREVKDPRIG T0287 127 :KPIM 1josA 34 :MVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEKGV 1josA 85 :AMRLRIV Number of specific fragments extracted= 7 number of extra gaps= 0 total=3833 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_289764041.pdb -s /var/tmp/to_scwrl_289764041.seq -o /var/tmp/from_scwrl_289764041.pdb > /var/tmp/scwrl_289764041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_289764041.pdb Number of alignments=516 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNYMKDYRA 1josA 8 :SDRVAQEIQKEIAV T0287 98 :LLHAIAENPNF 1josA 22 :ILQREVKDPRI T0287 126 :SKPIM 1josA 33 :GMVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEK 1josA 85 :AMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3840 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2082168255.pdb -s /var/tmp/to_scwrl_2082168255.seq -o /var/tmp/from_scwrl_2082168255.pdb > /var/tmp/scwrl_2082168255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2082168255.pdb Number of alignments=517 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-local-adpstyle1.a2m # 1josA read from T0287-1josA-t06-local-adpstyle1.a2m # found chain 1josA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 55 :FLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3841 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1433000266.pdb -s /var/tmp/to_scwrl_1433000266.seq -o /var/tmp/from_scwrl_1433000266.pdb > /var/tmp/scwrl_1433000266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433000266.pdb Number of alignments=518 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-local-adpstyle5.a2m # 1josA read from T0287-1josA-t06-local-adpstyle5.a2m # found chain 1josA in training set T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 50 :KIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3842 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_155106612.pdb -s /var/tmp/to_scwrl_155106612.seq -o /var/tmp/from_scwrl_155106612.pdb > /var/tmp/scwrl_155106612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155106612.pdb Number of alignments=519 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFLF 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIGM T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3847 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1829700843.pdb -s /var/tmp/to_scwrl_1829700843.seq -o /var/tmp/from_scwrl_1829700843.pdb > /var/tmp/scwrl_1829700843.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1829700843.pdb Number of alignments=520 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFL 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIG T0287 127 :K 1josA 34 :M T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=3853 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_609536864.pdb -s /var/tmp/to_scwrl_609536864.seq -o /var/tmp/from_scwrl_609536864.pdb > /var/tmp/scwrl_609536864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609536864.pdb Number of alignments=521 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-global-adpstyle1.a2m # 1josA read from T0287-1josA-t2k-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIADSKDKKEKLIE 1josA 8 :SDRVAQEIQKEIAVILQ T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 25 :REVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3857 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1017019850.pdb -s /var/tmp/to_scwrl_1017019850.seq -o /var/tmp/from_scwrl_1017019850.pdb > /var/tmp/scwrl_1017019850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1017019850.pdb Number of alignments=522 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-global-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIA 1josA 8 :SDRVAQ T0287 15 :S 1josA 14 :E T0287 19 :KEKLIESLQENELLNTDEKKKIIDQ 1josA 15 :IQKEIAVILQREVKDPRIGMVTVSD T0287 53 :QMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 40 :VEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=3863 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1908488616.pdb -s /var/tmp/to_scwrl_1908488616.seq -o /var/tmp/from_scwrl_1908488616.pdb > /var/tmp/scwrl_1908488616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1908488616.pdb Number of alignments=523 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNYMKDYR 1josA 8 :SDRVAQEIQKEIA T0287 97 :ELLHAIAENPNFL 1josA 21 :VILQREVKDPRIG T0287 127 :K 1josA 34 :M T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEKGV 1josA 85 :AMRLRIV Number of specific fragments extracted= 8 number of extra gaps= 0 total=3871 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1339370560.pdb -s /var/tmp/to_scwrl_1339370560.seq -o /var/tmp/from_scwrl_1339370560.pdb > /var/tmp/scwrl_1339370560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1339370560.pdb Number of alignments=524 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNYMKDYRA 1josA 8 :SDRVAQEIQKEIAV T0287 98 :LLHAIAENPNF 1josA 22 :ILQREVKDPRI T0287 126 :SKPIM 1josA 33 :GMVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEK 1josA 85 :AMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3878 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1697289740.pdb -s /var/tmp/to_scwrl_1697289740.seq -o /var/tmp/from_scwrl_1697289740.pdb > /var/tmp/scwrl_1697289740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1697289740.pdb Number of alignments=525 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-local-adpstyle1.a2m # 1josA read from T0287-1josA-t2k-local-adpstyle1.a2m # found chain 1josA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 55 :FLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3879 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_157387784.pdb -s /var/tmp/to_scwrl_157387784.seq -o /var/tmp/from_scwrl_157387784.pdb > /var/tmp/scwrl_157387784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_157387784.pdb Number of alignments=526 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-local-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-local-adpstyle5.a2m # found chain 1josA in training set T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 50 :KIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3880 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_115812261.pdb -s /var/tmp/to_scwrl_115812261.seq -o /var/tmp/from_scwrl_115812261.pdb > /var/tmp/scwrl_115812261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115812261.pdb Number of alignments=527 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFLF 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIGM T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3885 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_333096216.pdb -s /var/tmp/to_scwrl_333096216.seq -o /var/tmp/from_scwrl_333096216.pdb > /var/tmp/scwrl_333096216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_333096216.pdb Number of alignments=528 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFL 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIG T0287 127 :K 1josA 34 :M T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=3891 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_223400428.pdb -s /var/tmp/to_scwrl_223400428.seq -o /var/tmp/from_scwrl_223400428.pdb > /var/tmp/scwrl_223400428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_223400428.pdb Number of alignments=529 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1josA-t04-muscle.a2m.gz # 1josA read from T0287-1josA-t04-muscle.a2m.gz # found chain 1josA in training set Warning: unaligning (T0287)K18 because first residue in template chain is (1josA)R7 T0287 19 :KEKLIESLQE 1josA 8 :SDRVAQEIQK T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKK 1josA 18 :EIAVILQREVKDPRIGMVTVSDVEVSS T0287 114 :DRSILGIFLPFFSKP 1josA 45 :DLSYAKIFVTFLFDH T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANL 1josA 60 :DEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEI T0287 189 :KYMKEKGVQNA 1josA 95 :RFIYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=3896 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_736346229.pdb -s /var/tmp/to_scwrl_736346229.seq -o /var/tmp/from_scwrl_736346229.pdb > /var/tmp/scwrl_736346229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736346229.pdb Number of alignments=530 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1josA-t06-muscle.a2m.gz # 1josA read from T0287-1josA-t06-muscle.a2m.gz # found chain 1josA in training set Warning: unaligning (T0287)K18 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)G195 because last residue in template chain is (1josA)M106 T0287 19 :KEKLIESLQE 1josA 8 :SDRVAQEIQK T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKK 1josA 18 :EIAVILQREVKDPRIGMVTVSDVEVSS T0287 114 :DRSILGIFLPFFSKP 1josA 45 :DLSYAKIFVTFLFDH T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANL 1josA 60 :DEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEI T0287 184 :KFDLEKYMKEK 1josA 95 :RFIYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=3901 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_49792672.pdb -s /var/tmp/to_scwrl_49792672.seq -o /var/tmp/from_scwrl_49792672.pdb > /var/tmp/scwrl_49792672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49792672.pdb Number of alignments=531 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1josA-t2k-muscle.a2m.gz # 1josA read from T0287-1josA-t2k-muscle.a2m.gz # found chain 1josA in training set T0287 1 :MSNNMRKLF 1josA 7 :RSDRVAQEI T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDF 1josA 16 :QKEIAVILQREVKDPRIGMVTVSDVEVSSDL T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESE 1josA 47 :SYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKPIM 1josA 75 :SPYIRSLLGKAMRLRIVPEI T0287 189 :KYMKEKGVQNA 1josA 95 :RFIYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=3906 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_983397473.pdb -s /var/tmp/to_scwrl_983397473.seq -o /var/tmp/from_scwrl_983397473.pdb > /var/tmp/scwrl_983397473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_983397473.pdb Number of alignments=532 # command:# Prefix for input files set to 1knqA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t04-global-adpstyle1.a2m # 1knqA read from 1knqA-T0287-t04-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)E193 because last residue in template chain is (1knqA)K173 T0287 1 :MSNN 1knqA 3 :TTNH T0287 5 :M 1knqA 9 :H T0287 6 :RKLFSMIADSKDKKEKLIESLQENELLNTDEKKKI 1knqA 30 :HQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP T0287 90 :LLESETMELLHAIAENPNFLFSKFDRSILGIF 1knqA 65 :WLQALNDAAFAMQRTNKVSLIVCSALKKHYRD T0287 143 :ELYGTNLPLLKLFVMTDEEVNF 1knqA 97 :LLREGNPNLSFIYLKGDFDVIE T0287 165 :YANLKTIEQYNDYVRDLLMKF 1knqA 128 :FFKTQMLVTQFETLQEPGADE T0287 186 :DLEKYMK 1knqA 166 :STIEVIK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3913 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1546253509.pdb -s /var/tmp/to_scwrl_1546253509.seq -o /var/tmp/from_scwrl_1546253509.pdb > /var/tmp/scwrl_1546253509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1546253509.pdb Number of alignments=533 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t04-global-adpstyle5.a2m # 1knqA read from 1knqA-T0287-t04-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)E193 because last residue in template chain is (1knqA)K173 T0287 1 :MSNNMRKLFSMI 1knqA 3 :TTNHDHHIYVLM T0287 20 :EKLIESLQ 1knqA 26 :SEVAHQLH T0287 29 :NELLNTDE 1knqA 34 :AAFLDGDF T0287 37 :KK 1knqA 62 :RK T0287 90 :LLESETMELLHAIAENPNFLFSKFDRSILGIF 1knqA 65 :WLQALNDAAFAMQRTNKVSLIVCSALKKHYRD T0287 143 :ELYGTNLPLLKLFVMTDEEVNF 1knqA 97 :LLREGNPNLSFIYLKGDFDVIE T0287 165 :YANLKTIEQYNDYVRDLLMKFD 1knqA 128 :FFKTQMLVTQFETLQEPGADET T0287 187 :LEKYMK 1knqA 167 :TIEVIK Number of specific fragments extracted= 8 number of extra gaps= 0 total=3921 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_584133452.pdb -s /var/tmp/to_scwrl_584133452.seq -o /var/tmp/from_scwrl_584133452.pdb > /var/tmp/scwrl_584133452.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_584133452.pdb Number of alignments=534 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t04-local-adpstyle1.a2m # 1knqA read from 1knqA-T0287-t04-local-adpstyle1.a2m # found chain 1knqA in template set T0287 49 :DFFKQMHTNKGALDKVLRNYMKDY 1knqA 41 :FLHPRRNIEKMASGEPLNDDDRKP T0287 90 :LLESETMELLHAIAENPNFLFSKFDRSILGIF 1knqA 65 :WLQALNDAAFAMQRTNKVSLIVCSALKKHYRD T0287 143 :ELYGTNLPLLKLFVMTDEEV 1knqA 97 :LLREGNPNLSFIYLKGDFDV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3924 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1340214516.pdb -s /var/tmp/to_scwrl_1340214516.seq -o /var/tmp/from_scwrl_1340214516.pdb > /var/tmp/scwrl_1340214516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1340214516.pdb Number of alignments=535 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t04-local-adpstyle5.a2m # 1knqA read from 1knqA-T0287-t04-local-adpstyle5.a2m # found chain 1knqA in template set T0287 90 :LLESETMELLHAIAENPNFLFSKFDRSILGIF 1knqA 65 :WLQALNDAAFAMQRTNKVSLIVCSALKKHYRD T0287 143 :ELYGTNLPLLKLFVMTDEEVNFYA 1knqA 97 :LLREGNPNLSFIYLKGDFDVIESR T0287 167 :NL 1knqA 130 :KT Number of specific fragments extracted= 3 number of extra gaps= 0 total=3927 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_599020543.pdb -s /var/tmp/to_scwrl_599020543.seq -o /var/tmp/from_scwrl_599020543.pdb > /var/tmp/scwrl_599020543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_599020543.pdb Number of alignments=536 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t2k-global-adpstyle1.a2m # 1knqA read from 1knqA-T0287-t2k-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1knqA 30 :HQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP T0287 107 :NFLFSKFDRSILGIFLPFFSKPIMFK 1knqA 104 :NLSFIYLKGDFDVIESRLKARKGHFF T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1knqA 130 :KTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3930 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1192466397.pdb -s /var/tmp/to_scwrl_1192466397.seq -o /var/tmp/from_scwrl_1192466397.pdb > /var/tmp/scwrl_1192466397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192466397.pdb Number of alignments=537 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t2k-global-adpstyle5.a2m # 1knqA read from 1knqA-T0287-t2k-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 1 :MSNN 1knqA 5 :NHDH T0287 5 :MRKLFSMIADSKDKKEK 1knqA 29 :AHQLHAAFLDGDFLHPR T0287 22 :LIESLQENELLNTDEKKKII 1knqA 47 :NIEKMASGEPLNDDDRKPWL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1knqA 71 :DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP T0287 107 :NFLFSKFDRSILGIFLPFFSKPIMFK 1knqA 104 :NLSFIYLKGDFDVIESRLKARKGHFF T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1knqA 130 :KTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 6 number of extra gaps= 0 total=3936 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1188098062.pdb -s /var/tmp/to_scwrl_1188098062.seq -o /var/tmp/from_scwrl_1188098062.pdb > /var/tmp/scwrl_1188098062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1188098062.pdb Number of alignments=538 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t2k-local-adpstyle1.a2m # 1knqA read from 1knqA-T0287-t2k-local-adpstyle1.a2m # found chain 1knqA in template set T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1knqA 26 :SEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3937 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1994255651.pdb -s /var/tmp/to_scwrl_1994255651.seq -o /var/tmp/from_scwrl_1994255651.pdb > /var/tmp/scwrl_1994255651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994255651.pdb Number of alignments=539 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t2k-local-adpstyle5.a2m # 1knqA read from 1knqA-T0287-t2k-local-adpstyle5.a2m # found chain 1knqA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3937 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-simplesw-adpstyle1.a2m # 1knqA read from T0287-1knqA-simplesw-adpstyle1.a2m # found chain 1knqA in template set T0287 23 :IESLQENELLNTDEKKKIIDQI 1knqA 48 :IEKMASGEPLNDDDRKPWLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3938 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_573681366.pdb -s /var/tmp/to_scwrl_573681366.seq -o /var/tmp/from_scwrl_573681366.pdb > /var/tmp/scwrl_573681366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573681366.pdb Number of alignments=540 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-simplesw-adpstyle5.a2m # 1knqA read from T0287-1knqA-simplesw-adpstyle5.a2m # found chain 1knqA in template set T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTM 1knqA 46 :RNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLE 1knqA 85 :IVCSALKKHYRDLL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3941 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_480069961.pdb -s /var/tmp/to_scwrl_480069961.seq -o /var/tmp/from_scwrl_480069961.pdb > /var/tmp/scwrl_480069961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_480069961.pdb Number of alignments=541 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-global-adpstyle1.a2m # 1knqA read from T0287-1knqA-t04-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)Q173 because last residue in template chain is (1knqA)K173 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1knqA 4 :TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 1knqA 86 :VCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1knqA 131 :TQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3944 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_710092024.pdb -s /var/tmp/to_scwrl_710092024.seq -o /var/tmp/from_scwrl_710092024.pdb > /var/tmp/scwrl_710092024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_710092024.pdb Number of alignments=542 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-global-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)Q197 because last residue in template chain is (1knqA)K173 T0287 4 :NMRK 1knqA 4 :TNHD T0287 8 :LFSMIADSKDKK 1knqA 10 :IYVLMGVSGSGK T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR T0287 101 :AIAENPNFLFSKFDRSILGIFLPFF 1knqA 100 :EGNPNLSFIYLKGDFDVIESRLKAR T0287 127 :KPIMFK 1knqA 125 :KGHFFK T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1knqA 133 :MLVTQFETLQEPGADETDVLVVD T0287 171 :IEQYNDYV 1knqA 156 :IDQPLEGV T0287 183 :MKFDLEKY 1knqA 164 :VASTIEVI T0287 196 :V 1knqA 172 :K Number of specific fragments extracted= 11 number of extra gaps= 0 total=3955 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1612963266.pdb -s /var/tmp/to_scwrl_1612963266.seq -o /var/tmp/from_scwrl_1612963266.pdb > /var/tmp/scwrl_1612963266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1612963266.pdb Number of alignments=543 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 68 :YMKDYRAVIKSIGVD 1knqA 90 :LKKHYRDLLREGNPN T0287 83 :KFKKVYRL 1knqA 113 :DFDVIESR T0287 102 :IAENPNFLFSKF 1knqA 121 :LKARKGHFFKTQ T0287 117 :ILGIFL 1knqA 133 :MLVTQF T0287 140 :SQIELYGTNLPLL 1knqA 139 :ETLQEPGADETDV T0287 154 :LFVMTDEE 1knqA 152 :LVVDIDQP T0287 171 :IEQYNDYVRDLLM 1knqA 160 :LEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=3966 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1240224663.pdb -s /var/tmp/to_scwrl_1240224663.seq -o /var/tmp/from_scwrl_1240224663.pdb > /var/tmp/scwrl_1240224663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1240224663.pdb Number of alignments=544 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIK 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDK 1knqA 113 :DFDV T0287 98 :LLHAIAENPNFLFSK 1knqA 117 :IESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=3977 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_351403866.pdb -s /var/tmp/to_scwrl_351403866.seq -o /var/tmp/from_scwrl_351403866.pdb > /var/tmp/scwrl_351403866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_351403866.pdb Number of alignments=545 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-local-adpstyle1.a2m # 1knqA read from T0287-1knqA-t04-local-adpstyle1.a2m # found chain 1knqA in template set T0287 23 :IESLQENELLNTDEKKKIIDQI 1knqA 48 :IEKMASGEPLNDDDRKPWLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3978 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_337796557.pdb -s /var/tmp/to_scwrl_337796557.seq -o /var/tmp/from_scwrl_337796557.pdb > /var/tmp/scwrl_337796557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_337796557.pdb Number of alignments=546 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-local-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-local-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR Number of specific fragments extracted= 3 number of extra gaps= 0 total=3981 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1529988704.pdb -s /var/tmp/to_scwrl_1529988704.seq -o /var/tmp/from_scwrl_1529988704.pdb > /var/tmp/scwrl_1529988704.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1529988704.pdb Number of alignments=547 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 59 :GALDKVLRNY 1knqA 92 :KHYRDLLREG T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETME 1knqA 114 :FDVIESRLKARKGHFFKTQMLVTQFETLQ T0287 103 :AENPNFLFSKFDRSILG 1knqA 146 :ADETDVLVVDIDQPLEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=3986 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_286088474.pdb -s /var/tmp/to_scwrl_286088474.seq -o /var/tmp/from_scwrl_286088474.pdb > /var/tmp/scwrl_286088474.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_286088474.pdb Number of alignments=548 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIK 1knqA 44 :PRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDKF 1knqA 113 :DFDVI T0287 99 :LHAIAENPNFLFSK 1knqA 118 :ESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3995 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1770796823.pdb -s /var/tmp/to_scwrl_1770796823.seq -o /var/tmp/from_scwrl_1770796823.pdb > /var/tmp/scwrl_1770796823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770796823.pdb Number of alignments=549 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-global-adpstyle1.a2m # 1knqA read from T0287-1knqA-t06-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)Q173 because last residue in template chain is (1knqA)K173 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1knqA 4 :TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 1knqA 86 :VCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1knqA 131 :TQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3998 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1685095316.pdb -s /var/tmp/to_scwrl_1685095316.seq -o /var/tmp/from_scwrl_1685095316.pdb > /var/tmp/scwrl_1685095316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1685095316.pdb Number of alignments=550 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-global-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)Q197 because last residue in template chain is (1knqA)K173 T0287 4 :NMRK 1knqA 4 :TNHD T0287 8 :LFSMIADSKDKK 1knqA 10 :IYVLMGVSGSGK T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR T0287 101 :AIAENPNFLFSKFDRSILGIFLPFF 1knqA 100 :EGNPNLSFIYLKGDFDVIESRLKAR T0287 127 :KPIMFK 1knqA 125 :KGHFFK T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1knqA 133 :MLVTQFETLQEPGADETDVLVVD T0287 171 :IEQYNDYV 1knqA 156 :IDQPLEGV T0287 183 :MKFDLEKY 1knqA 164 :VASTIEVI T0287 196 :V 1knqA 172 :K Number of specific fragments extracted= 11 number of extra gaps= 0 total=4009 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2115789317.pdb -s /var/tmp/to_scwrl_2115789317.seq -o /var/tmp/from_scwrl_2115789317.pdb > /var/tmp/scwrl_2115789317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2115789317.pdb Number of alignments=551 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 68 :YMKDYRAVIKSIGVD 1knqA 90 :LKKHYRDLLREGNPN T0287 83 :KFKKVYRL 1knqA 113 :DFDVIESR T0287 102 :IAENPNFLFSKF 1knqA 121 :LKARKGHFFKTQ T0287 117 :ILGIFL 1knqA 133 :MLVTQF T0287 140 :SQIELYGTNLPLL 1knqA 139 :ETLQEPGADETDV T0287 154 :LFVMTDEE 1knqA 152 :LVVDIDQP T0287 171 :IEQYNDYVRDLLM 1knqA 160 :LEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4020 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_232850040.pdb -s /var/tmp/to_scwrl_232850040.seq -o /var/tmp/from_scwrl_232850040.pdb > /var/tmp/scwrl_232850040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_232850040.pdb Number of alignments=552 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIK 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDK 1knqA 113 :DFDV T0287 98 :LLHAIAENPNFLFSK 1knqA 117 :IESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4031 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_554631519.pdb -s /var/tmp/to_scwrl_554631519.seq -o /var/tmp/from_scwrl_554631519.pdb > /var/tmp/scwrl_554631519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554631519.pdb Number of alignments=553 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-local-adpstyle1.a2m # 1knqA read from T0287-1knqA-t06-local-adpstyle1.a2m # found chain 1knqA in template set T0287 23 :IESLQENELLNTDEKKKIIDQI 1knqA 48 :IEKMASGEPLNDDDRKPWLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4032 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1876794286.pdb -s /var/tmp/to_scwrl_1876794286.seq -o /var/tmp/from_scwrl_1876794286.pdb > /var/tmp/scwrl_1876794286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1876794286.pdb Number of alignments=554 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-local-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-local-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4035 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1572220601.pdb -s /var/tmp/to_scwrl_1572220601.seq -o /var/tmp/from_scwrl_1572220601.pdb > /var/tmp/scwrl_1572220601.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1572220601.pdb Number of alignments=555 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 59 :GALDKVLRNY 1knqA 92 :KHYRDLLREG T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETME 1knqA 114 :FDVIESRLKARKGHFFKTQMLVTQFETLQ T0287 103 :AENPNFLFSKFDRSILG 1knqA 146 :ADETDVLVVDIDQPLEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4040 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_104437612.pdb -s /var/tmp/to_scwrl_104437612.seq -o /var/tmp/from_scwrl_104437612.pdb > /var/tmp/scwrl_104437612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_104437612.pdb Number of alignments=556 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIK 1knqA 44 :PRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDKF 1knqA 113 :DFDVI T0287 99 :LHAIAENPNFLFSK 1knqA 118 :ESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 9 number of extra gaps= 0 total=4049 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2034182071.pdb -s /var/tmp/to_scwrl_2034182071.seq -o /var/tmp/from_scwrl_2034182071.pdb > /var/tmp/scwrl_2034182071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2034182071.pdb Number of alignments=557 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-global-adpstyle1.a2m # 1knqA read from T0287-1knqA-t2k-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)Q173 because last residue in template chain is (1knqA)K173 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1knqA 4 :TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 1knqA 86 :VCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1knqA 131 :TQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4052 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1688032862.pdb -s /var/tmp/to_scwrl_1688032862.seq -o /var/tmp/from_scwrl_1688032862.pdb > /var/tmp/scwrl_1688032862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1688032862.pdb Number of alignments=558 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-global-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)Q197 because last residue in template chain is (1knqA)K173 T0287 4 :NMRK 1knqA 4 :TNHD T0287 8 :LFSMIADSKDKK 1knqA 10 :IYVLMGVSGSGK T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR T0287 101 :AIAENPNFLFSKFDRSILGIFLPFF 1knqA 100 :EGNPNLSFIYLKGDFDVIESRLKAR T0287 127 :KPIMFK 1knqA 125 :KGHFFK T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1knqA 133 :MLVTQFETLQEPGADETDVLVVD T0287 171 :IEQYNDYV 1knqA 156 :IDQPLEGV T0287 183 :MKFDLEKY 1knqA 164 :VASTIEVI T0287 196 :V 1knqA 172 :K Number of specific fragments extracted= 11 number of extra gaps= 0 total=4063 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_437533828.pdb -s /var/tmp/to_scwrl_437533828.seq -o /var/tmp/from_scwrl_437533828.pdb > /var/tmp/scwrl_437533828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437533828.pdb Number of alignments=559 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)Q197 because last residue in template chain is (1knqA)K173 T0287 4 :NMRK 1knqA 4 :TNHD T0287 8 :LFSMIADSKD 1knqA 24 :VASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 68 :YMKDYRAVIKSIGVD 1knqA 90 :LKKHYRDLLREGNPN T0287 88 :Y 1knqA 109 :Y T0287 91 :LESETMELLHAIAENPNFLFSK 1knqA 110 :LKGDFDVIESRLKARKGHFFKT T0287 116 :SILGIF 1knqA 132 :QMLVTQ T0287 139 :DSQIELYGTNLPLL 1knqA 138 :FETLQEPGADETDV T0287 154 :LFVMTDEEV 1knqA 152 :LVVDIDQPL T0287 172 :EQYNDYVRDLLM 1knqA 161 :EGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4074 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_110098852.pdb -s /var/tmp/to_scwrl_110098852.seq -o /var/tmp/from_scwrl_110098852.pdb > /var/tmp/scwrl_110098852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110098852.pdb Number of alignments=560 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIK 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDK 1knqA 113 :DFDV T0287 98 :LLHAIAENPNFLFSK 1knqA 117 :IESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4085 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_276895445.pdb -s /var/tmp/to_scwrl_276895445.seq -o /var/tmp/from_scwrl_276895445.pdb > /var/tmp/scwrl_276895445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_276895445.pdb Number of alignments=561 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-local-adpstyle1.a2m # 1knqA read from T0287-1knqA-t2k-local-adpstyle1.a2m # found chain 1knqA in template set T0287 23 :IESLQENELLNTDEKKKIIDQI 1knqA 48 :IEKMASGEPLNDDDRKPWLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4086 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_487326501.pdb -s /var/tmp/to_scwrl_487326501.seq -o /var/tmp/from_scwrl_487326501.pdb > /var/tmp/scwrl_487326501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487326501.pdb Number of alignments=562 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-local-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-local-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4089 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1093496324.pdb -s /var/tmp/to_scwrl_1093496324.seq -o /var/tmp/from_scwrl_1093496324.pdb > /var/tmp/scwrl_1093496324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093496324.pdb Number of alignments=563 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 69 :MKDYRAVIKSI 1knqA 91 :KKHYRDLLREG T0287 105 :N 1knqA 102 :N Number of specific fragments extracted= 4 number of extra gaps= 0 total=4093 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1823148954.pdb -s /var/tmp/to_scwrl_1823148954.seq -o /var/tmp/from_scwrl_1823148954.pdb > /var/tmp/scwrl_1823148954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1823148954.pdb Number of alignments=564 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIK 1knqA 44 :PRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDKF 1knqA 113 :DFDVI T0287 99 :LHAIAENPNFLFSK 1knqA 118 :ESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 9 number of extra gaps= 0 total=4102 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1071459953.pdb -s /var/tmp/to_scwrl_1071459953.seq -o /var/tmp/from_scwrl_1071459953.pdb > /var/tmp/scwrl_1071459953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1071459953.pdb Number of alignments=565 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1knqA-t04-muscle.a2m.gz # 1knqA read from T0287-1knqA-t04-muscle.a2m.gz # found chain 1knqA in template set Warning: unaligning (T0287)L187 because last residue in template chain is (1knqA)K173 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQE 1knqA 3 :TTNHDHHIYVLMGVSGSGKSAVASEVAH T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 1knqA 31 :QLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQA T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFD 1knqA 69 :LNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4105 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_286227195.pdb -s /var/tmp/to_scwrl_286227195.seq -o /var/tmp/from_scwrl_286227195.pdb > /var/tmp/scwrl_286227195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_286227195.pdb Number of alignments=566 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-muscle.a2m.gz # 1knqA read from T0287-1knqA-t2k-muscle.a2m.gz # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDE 1knqA 6 :HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDF T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1knqA 44 :PRRNIEKMASGEPLNDDDRKPW T0287 59 :GALDKVLRNYMKDYRAVIKSIGVDK 1knqA 67 :QALNDAAFAMQRTNKVSLIVCSALK T0287 93 :SETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 1knqA 92 :KHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1knqA 130 :KTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4110 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_274685851.pdb -s /var/tmp/to_scwrl_274685851.seq -o /var/tmp/from_scwrl_274685851.pdb > /var/tmp/scwrl_274685851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_274685851.pdb Number of alignments=567 # command:# Prefix for input files set to 1kobA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kobA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1kobA-T0287-t2k-global-adpstyle1.a2m # 1kobA read from 1kobA-T0287-t2k-global-adpstyle1.a2m # found chain 1kobA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTN 1kobA 74 :ATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL T0287 58 :KGALDKVLRNYM 1kobA 132 :GGELFDRIAAED T0287 70 :KD 1kobA 184 :TK T0287 72 :YRAVIKSIGVDKFKKVY 1kobA 188 :SSVKIIDFGLATKLNPD T0287 89 :RLLESETMELLHAIAENPNFLF 1kobA 249 :PFAGEDDLETLQNVKRCDWEFD T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1kobA 275 :SSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQEYQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=4116 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_116442703.pdb -s /var/tmp/to_scwrl_116442703.seq -o /var/tmp/from_scwrl_116442703.pdb > /var/tmp/scwrl_116442703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_116442703.pdb Number of alignments=568 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kobA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1kobA-T0287-t2k-global-adpstyle5.a2m # 1kobA read from 1kobA-T0287-t2k-global-adpstyle5.a2m # found chain 1kobA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLN 1kobA 28 :KFYEDIWKKYVPQPVEVKQGSVYDYYDILEELG T0287 34 :TDEKKKIIDQIKT 1kobA 89 :PLDKYTVKNEISI T0287 47 :MHDFFKQM 1kobA 113 :LHDAFEDK T0287 55 :HT 1kobA 128 :EF T0287 57 :NKGALDKVLRNYM 1kobA 131 :SGGELFDRIAAED T0287 70 :KD 1kobA 184 :TK T0287 72 :YRAVIKSIGVDKFKKVY 1kobA 188 :SSVKIIDFGLATKLNPD T0287 91 :LESETMELLHAIAENPNFLF 1kobA 251 :AGEDDLETLQNVKRCDWEFD T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1kobA 275 :SSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQEYQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=4125 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1474325257.pdb -s /var/tmp/to_scwrl_1474325257.seq -o /var/tmp/from_scwrl_1474325257.pdb > /var/tmp/scwrl_1474325257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474325257.pdb Number of alignments=569 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kobA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1kobA-T0287-t2k-local-adpstyle1.a2m # 1kobA read from 1kobA-T0287-t2k-local-adpstyle1.a2m # found chain 1kobA in template set T0287 75 :VIKSIGVDKFKKVYR 1kobA 55 :ILEELGSGAFGVVHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=4126 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kobA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1kobA-T0287-t2k-local-adpstyle5.a2m # 1kobA read from 1kobA-T0287-t2k-local-adpstyle5.a2m # found chain 1kobA in template set T0287 75 :VIKSIGVDKFKKVYRLLE 1kobA 55 :ILEELGSGAFGVVHRCVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4127 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tkiA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tkiA-T0287-fssp-global-adpstyle5.a2m # 1kobA read from 1tkiA-T0287-fssp-global-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1kobA)P177 T0287 13 :ADSKDKKEKL 1kobA 50 :YDYYDILEEL T0287 23 :IESLQEN 1kobA 81 :AKFINTP T0287 34 :TDEKKKIIDQIKTM 1kobA 89 :PLDKYTVKNEISIM T0287 48 :HDFFKQM 1kobA 114 :HDAFEDK T0287 60 :ALDKVLRNYMK 1kobA 121 :YEMVLILEFLS T0287 71 :DYRAVIKS 1kobA 134 :ELFDRIAA T0287 79 :IG 1kobA 146 :MS T0287 81 :VDKFKKVYRLLES 1kobA 152 :INYMRQACEGLKH T0287 94 :ETMELLHAIA 1kobA 166 :HEHSIVHLDI T0287 106 :PNFLFSKFDRSILGIFL 1kobA 178 :ENIMCETKKASSVKIID T0287 123 :PFFSKPIMFKMS 1kobA 199 :TKLNPDEIVKVT T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVNFYAN 1kobA 240 :GYVLLSGLSPFAGEDDLETLQNVKRCDWEFDED T0287 168 :L 1kobA 274 :F T0287 169 :K 1kobA 276 :S T0287 172 :EQYNDYVRDLLMKFD 1kobA 279 :PEAKDFIKNLLQKEP T0287 187 :LEKYMK 1kobA 307 :WLKGDH T0287 193 :EKGVQNA 1kobA 366 :DSYFDRK Number of specific fragments extracted= 17 number of extra gaps= 1 total=4144 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_121457855.pdb -s /var/tmp/to_scwrl_121457855.seq -o /var/tmp/from_scwrl_121457855.pdb > /var/tmp/scwrl_121457855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121457855.pdb Number of alignments=570 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tkiA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tkiA-T0287-fssp-local-adpstyle5.a2m # 1kobA read from 1tkiA-T0287-fssp-local-adpstyle5.a2m # found chain 1kobA in template set T0287 73 :RAVIKSIGVD 1kobA 78 :VFVAKFINTP T0287 83 :KFKKVYRLLESETMELLH 1kobA 89 :PLDKYTVKNEISIMNQLH T0287 102 :IAENPNFLFSKFDRSILGIFLPFFS 1kobA 107 :HPKLINLHDAFEDKYEMVLILEFLS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4147 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_690124070.pdb -s /var/tmp/to_scwrl_690124070.seq -o /var/tmp/from_scwrl_690124070.pdb > /var/tmp/scwrl_690124070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690124070.pdb Number of alignments=571 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-simplesw-adpstyle1.a2m # 1kobA read from T0287-1kobA-simplesw-adpstyle1.a2m # found chain 1kobA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=4148 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1954395218.pdb -s /var/tmp/to_scwrl_1954395218.seq -o /var/tmp/from_scwrl_1954395218.pdb > /var/tmp/scwrl_1954395218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954395218.pdb Number of alignments=572 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-simplesw-adpstyle5.a2m # 1kobA read from T0287-1kobA-simplesw-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4150 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_831549880.pdb -s /var/tmp/to_scwrl_831549880.seq -o /var/tmp/from_scwrl_831549880.pdb > /var/tmp/scwrl_831549880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831549880.pdb Number of alignments=573 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-global-adpstyle1.a2m # 1kobA read from T0287-1kobA-t04-global-adpstyle1.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNKG 1kobA 24 :NDYDKFYEDIWKKYVPQPV T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFD 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYT T0287 115 :RSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1kobA 96 :KNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGL T0287 189 :KYMKEKGVQNA 1kobA 163 :KHMHEHSIVHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4154 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_155603689.pdb -s /var/tmp/to_scwrl_155603689.seq -o /var/tmp/from_scwrl_155603689.pdb > /var/tmp/scwrl_155603689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155603689.pdb Number of alignments=574 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-global-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-global-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY T0287 114 :DRSILGIFLPFFSKPIMF 1kobA 119 :DKYEMVLILEFLSGGELF T0287 153 :KLFVMTDEEVNFYANL 1kobA 142 :EDYKMSEAEVINYMRQ T0287 170 :TIEQYNDYVRDLLMKFDL 1kobA 158 :ACEGLKHMHEHSIVHLDI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4159 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1047136235.pdb -s /var/tmp/to_scwrl_1047136235.seq -o /var/tmp/from_scwrl_1047136235.pdb > /var/tmp/scwrl_1047136235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1047136235.pdb Number of alignments=575 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)L26 because first residue in template chain is (1kobA)I23 T0287 27 :QENELLNTDEKKKIIDQ 1kobA 24 :NDYDKFYEDIWKKYVPQ T0287 46 :TMHDF 1kobA 48 :SVYDY T0287 56 :T 1kobA 86 :T T0287 58 :KGALDK 1kobA 87 :PYPLDK T0287 64 :VLRNYMK 1kobA 94 :TVKNEIS T0287 75 :VIKSIGVDKFK 1kobA 135 :LFDRIAAEDYK T0287 86 :KVYRLLE 1kobA 150 :EVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 130 :MFKMS 1kobA 198 :ATKLN T0287 139 :DSQIELYGTNLPLL 1kobA 203 :PDEIVKVTTATAEF T0287 156 :VMTDEEVNFYANLKTI 1kobA 250 :FAGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 279 :PEAKDFIKNLLQK T0287 187 :LEKYMKEKGVQNA 1kobA 327 :IRQKIKEKYADWP Number of specific fragments extracted= 14 number of extra gaps= 0 total=4173 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1182953745.pdb -s /var/tmp/to_scwrl_1182953745.seq -o /var/tmp/from_scwrl_1182953745.pdb > /var/tmp/scwrl_1182953745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182953745.pdb Number of alignments=576 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set T0287 3 :NNMRKLFSMIAD 1kobA 24 :NDYDKFYEDIWK T0287 25 :S 1kobA 36 :K T0287 26 :LQENELL 1kobA 39 :PQPVEVK T0287 33 :NTDE 1kobA 85 :NTPY T0287 38 :KKIIDQIKTMHDFFKQMHTNK 1kobA 89 :PLDKYTVKNEISIMNQLHHPK T0287 75 :VIKSIGVDKF 1kobA 135 :LFDRIAAEDY T0287 85 :KKVYRLLE 1kobA 149 :AEVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 126 :SKPIMFKMSIREM 1kobA 204 :DEIVKVTTATAEF T0287 147 :TNLPL 1kobA 223 :DREPV T0287 157 :MTDEEVNFYANLKTI 1kobA 251 :AGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 275 :SSVSPEAKDFIKN T0287 185 :FDLEKYMKEKGVQNA 1kobA 297 :LTVHDALEHPWLKGD Number of specific fragments extracted= 14 number of extra gaps= 0 total=4187 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_493400246.pdb -s /var/tmp/to_scwrl_493400246.seq -o /var/tmp/from_scwrl_493400246.pdb > /var/tmp/scwrl_493400246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_493400246.pdb Number of alignments=577 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-local-adpstyle1.a2m # 1kobA read from T0287-1kobA-t04-local-adpstyle1.a2m # found chain 1kobA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=4188 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_429641293.pdb -s /var/tmp/to_scwrl_429641293.seq -o /var/tmp/from_scwrl_429641293.pdb > /var/tmp/scwrl_429641293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_429641293.pdb Number of alignments=578 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-local-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-local-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4190 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1469042219.pdb -s /var/tmp/to_scwrl_1469042219.seq -o /var/tmp/from_scwrl_1469042219.pdb > /var/tmp/scwrl_1469042219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1469042219.pdb Number of alignments=579 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set T0287 114 :DRSILGIFLPFFSKPIMFKM 1kobA 27 :DKFYEDIWKKYVPQPVEVKQ T0287 134 :SIREMDSQIELYG 1kobA 48 :SVYDYYDILEELG T0287 147 :TNLPLLKLFVMTDEEVNFYANLK 1kobA 75 :TGRVFVAKFINTPYPLDKYTVKN Number of specific fragments extracted= 3 number of extra gaps= 0 total=4193 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_116713422.pdb -s /var/tmp/to_scwrl_116713422.seq -o /var/tmp/from_scwrl_116713422.pdb > /var/tmp/scwrl_116713422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_116713422.pdb Number of alignments=580 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4193 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-global-adpstyle1.a2m # 1kobA read from T0287-1kobA-t06-global-adpstyle1.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNKG 1kobA 24 :NDYDKFYEDIWKKYVPQPV T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFD 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYT T0287 115 :RSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1kobA 96 :KNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGL T0287 189 :KYMKEKGVQNA 1kobA 163 :KHMHEHSIVHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4197 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2114736609.pdb -s /var/tmp/to_scwrl_2114736609.seq -o /var/tmp/from_scwrl_2114736609.pdb > /var/tmp/scwrl_2114736609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2114736609.pdb Number of alignments=581 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-global-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-global-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY T0287 114 :DRSILGIFLPFFSKPIMF 1kobA 119 :DKYEMVLILEFLSGGELF T0287 153 :KLFVMTDEEVNFYANL 1kobA 142 :EDYKMSEAEVINYMRQ T0287 170 :TIEQYNDYVRDLLMKFDL 1kobA 158 :ACEGLKHMHEHSIVHLDI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4202 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1437347889.pdb -s /var/tmp/to_scwrl_1437347889.seq -o /var/tmp/from_scwrl_1437347889.pdb > /var/tmp/scwrl_1437347889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1437347889.pdb Number of alignments=582 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)L26 because first residue in template chain is (1kobA)I23 T0287 27 :QENELLNTDEKKKIIDQ 1kobA 24 :NDYDKFYEDIWKKYVPQ T0287 46 :TMHDF 1kobA 48 :SVYDY T0287 56 :T 1kobA 86 :T T0287 58 :KGALDK 1kobA 87 :PYPLDK T0287 64 :VLRNYMK 1kobA 94 :TVKNEIS T0287 75 :VIKSIGVDKFK 1kobA 135 :LFDRIAAEDYK T0287 86 :KVYRLLE 1kobA 150 :EVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 130 :MFKMS 1kobA 198 :ATKLN T0287 139 :DSQIELYGTNLPLL 1kobA 203 :PDEIVKVTTATAEF T0287 156 :VMTDEEVNFYANLKTI 1kobA 250 :FAGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 279 :PEAKDFIKNLLQK T0287 187 :LEKYMKEKGVQNA 1kobA 327 :IRQKIKEKYADWP Number of specific fragments extracted= 14 number of extra gaps= 0 total=4216 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_349563463.pdb -s /var/tmp/to_scwrl_349563463.seq -o /var/tmp/from_scwrl_349563463.pdb > /var/tmp/scwrl_349563463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_349563463.pdb Number of alignments=583 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set T0287 3 :NNMRKLFSMIAD 1kobA 24 :NDYDKFYEDIWK T0287 25 :S 1kobA 36 :K T0287 26 :LQENELL 1kobA 39 :PQPVEVK T0287 33 :NTDE 1kobA 85 :NTPY T0287 38 :KKIIDQIKTMHDFFKQMHTNK 1kobA 89 :PLDKYTVKNEISIMNQLHHPK T0287 75 :VIKSIGVDKF 1kobA 135 :LFDRIAAEDY T0287 85 :KKVYRLLE 1kobA 149 :AEVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 126 :SKPIMFKMSIREM 1kobA 204 :DEIVKVTTATAEF T0287 147 :TNLPL 1kobA 223 :DREPV T0287 157 :MTDEEVNFYANLKTI 1kobA 251 :AGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 275 :SSVSPEAKDFIKN T0287 185 :FDLEKYMKEKGVQNA 1kobA 297 :LTVHDALEHPWLKGD Number of specific fragments extracted= 14 number of extra gaps= 0 total=4230 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_521884482.pdb -s /var/tmp/to_scwrl_521884482.seq -o /var/tmp/from_scwrl_521884482.pdb > /var/tmp/scwrl_521884482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_521884482.pdb Number of alignments=584 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-local-adpstyle1.a2m # 1kobA read from T0287-1kobA-t06-local-adpstyle1.a2m # found chain 1kobA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=4231 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1166658528.pdb -s /var/tmp/to_scwrl_1166658528.seq -o /var/tmp/from_scwrl_1166658528.pdb > /var/tmp/scwrl_1166658528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1166658528.pdb Number of alignments=585 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-local-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-local-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4233 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1921784064.pdb -s /var/tmp/to_scwrl_1921784064.seq -o /var/tmp/from_scwrl_1921784064.pdb > /var/tmp/scwrl_1921784064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1921784064.pdb Number of alignments=586 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set T0287 114 :DRSILGIFLPFFSKPIMFKM 1kobA 27 :DKFYEDIWKKYVPQPVEVKQ T0287 134 :SIREMDSQIELYG 1kobA 48 :SVYDYYDILEELG T0287 147 :TNLPLLKLFVMTDEEVNFYANLK 1kobA 75 :TGRVFVAKFINTPYPLDKYTVKN Number of specific fragments extracted= 3 number of extra gaps= 0 total=4236 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_626322094.pdb -s /var/tmp/to_scwrl_626322094.seq -o /var/tmp/from_scwrl_626322094.pdb > /var/tmp/scwrl_626322094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_626322094.pdb Number of alignments=587 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4236 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-global-adpstyle1.a2m # 1kobA read from T0287-1kobA-t2k-global-adpstyle1.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNKG 1kobA 24 :NDYDKFYEDIWKKYVPQPV T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFD 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYT T0287 115 :RSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1kobA 96 :KNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGL T0287 189 :KYMKEKGVQNA 1kobA 163 :KHMHEHSIVHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4240 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1053356953.pdb -s /var/tmp/to_scwrl_1053356953.seq -o /var/tmp/from_scwrl_1053356953.pdb > /var/tmp/scwrl_1053356953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053356953.pdb Number of alignments=588 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-global-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-global-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY T0287 114 :DRSILGIFLPFFSKPIMF 1kobA 119 :DKYEMVLILEFLSGGELF T0287 153 :KLFVMTDEEVNFYANL 1kobA 142 :EDYKMSEAEVINYMRQ T0287 170 :TIEQYNDYVRDLLMKFDL 1kobA 158 :ACEGLKHMHEHSIVHLDI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4245 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1462333279.pdb -s /var/tmp/to_scwrl_1462333279.seq -o /var/tmp/from_scwrl_1462333279.pdb > /var/tmp/scwrl_1462333279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1462333279.pdb Number of alignments=589 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)L26 because first residue in template chain is (1kobA)I23 T0287 27 :QENELLNTDEKKKIIDQ 1kobA 24 :NDYDKFYEDIWKKYVPQ T0287 56 :T 1kobA 86 :T T0287 58 :KGALDK 1kobA 87 :PYPLDK T0287 64 :VLRNYMKDY 1kobA 94 :TVKNEISIM T0287 75 :VIKSIGVDKFK 1kobA 135 :LFDRIAAEDYK T0287 86 :KVYRLLESET 1kobA 150 :EVINYMRQAC T0287 97 :ELLHAIAENP 1kobA 160 :EGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 126 :SKPIMFKMSIREM 1kobA 204 :DEIVKVTTATAEF T0287 147 :TNLPL 1kobA 223 :DREPV T0287 156 :VMTDEEVNFYANLKTI 1kobA 250 :FAGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 279 :PEAKDFIKNLLQK T0287 185 :FDLEKYMKEKGV 1kobA 297 :LTVHDALEHPWL Number of specific fragments extracted= 13 number of extra gaps= 0 total=4258 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1063855923.pdb -s /var/tmp/to_scwrl_1063855923.seq -o /var/tmp/from_scwrl_1063855923.pdb > /var/tmp/scwrl_1063855923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1063855923.pdb Number of alignments=590 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set T0287 3 :NNMRKLFSMIAD 1kobA 24 :NDYDKFYEDIWK T0287 25 :S 1kobA 36 :K T0287 26 :LQENELL 1kobA 39 :PQPVEVK T0287 33 :NTDE 1kobA 85 :NTPY T0287 38 :KKIIDQIKTMHDFFKQMHTNK 1kobA 89 :PLDKYTVKNEISIMNQLHHPK T0287 75 :VIKSIGVDKF 1kobA 135 :LFDRIAAEDY T0287 85 :KKVYRLLE 1kobA 149 :AEVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 126 :SKPIMFKMSIREM 1kobA 204 :DEIVKVTTATAEF T0287 147 :TNLPL 1kobA 223 :DREPV T0287 157 :MTDEEVNFYANLKTI 1kobA 251 :AGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 275 :SSVSPEAKDFIKN T0287 185 :FDLEKYMKEKGVQNA 1kobA 297 :LTVHDALEHPWLKGD Number of specific fragments extracted= 14 number of extra gaps= 0 total=4272 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1163455804.pdb -s /var/tmp/to_scwrl_1163455804.seq -o /var/tmp/from_scwrl_1163455804.pdb > /var/tmp/scwrl_1163455804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1163455804.pdb Number of alignments=591 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-local-adpstyle1.a2m # 1kobA read from T0287-1kobA-t2k-local-adpstyle1.a2m # found chain 1kobA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=4273 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1739228724.pdb -s /var/tmp/to_scwrl_1739228724.seq -o /var/tmp/from_scwrl_1739228724.pdb > /var/tmp/scwrl_1739228724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1739228724.pdb Number of alignments=592 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-local-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-local-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4275 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1551182423.pdb -s /var/tmp/to_scwrl_1551182423.seq -o /var/tmp/from_scwrl_1551182423.pdb > /var/tmp/scwrl_1551182423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1551182423.pdb Number of alignments=593 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set T0287 114 :DRSILGIFLPFFSKPIMFKM 1kobA 27 :DKFYEDIWKKYVPQPVEVKQ T0287 134 :SIREMDSQIELYG 1kobA 48 :SVYDYYDILEELG T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIE 1kobA 75 :TGRVFVAKFINTPYPLDKYTVKNEIS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4278 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_109468483.pdb -s /var/tmp/to_scwrl_109468483.seq -o /var/tmp/from_scwrl_109468483.pdb > /var/tmp/scwrl_109468483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_109468483.pdb Number of alignments=594 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4278 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-muscle.a2m.gz # 1kobA read from T0287-1kobA-t2k-muscle.a2m.gz # found chain 1kobA in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1kobA)P177 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKK 1kobA 71 :VEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMR T0287 87 :VYRLLESETMELLHAIA 1kobA 159 :CEGLKHMHEHSIVHLDI T0287 106 :PNFLFSKF 1kobA 178 :ENIMCETK T0287 114 :DRSILGIF 1kobA 188 :SSVKIIDF T0287 122 :LPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTI 1kobA 213 :TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNV T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 1kobA 275 :SSVSPEAKDFIKNLLQKEPRKRLTVHDA Number of specific fragments extracted= 6 number of extra gaps= 1 total=4284 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1414894032.pdb -s /var/tmp/to_scwrl_1414894032.seq -o /var/tmp/from_scwrl_1414894032.pdb > /var/tmp/scwrl_1414894032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414894032.pdb Number of alignments=595 # command:# Prefix for input files set to 1moh/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-fssp-global-adpstyle5.a2m # 1moh read from 1flp-T0287-fssp-global-adpstyle5.a2m # found chain 1moh in template set Warning: unaligning (T0287)M133 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKII 1moh 25 :GPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQA T0287 42 :DQIKTMHDFFKQM 1moh 67 :SFKGLVSNWVDNL T0287 56 :TNKGALDKVLRNYMKDYRAV 1moh 80 :DNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELL 1moh 100 :GISAGQLEAAFKVLSGFMKSYG T0287 114 :DRSILGIFLPFFSKPIMFK 1moh 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4289 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_475158729.pdb -s /var/tmp/to_scwrl_475158729.seq -o /var/tmp/from_scwrl_475158729.pdb > /var/tmp/scwrl_475158729.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_475158729.pdb Number of alignments=596 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-fssp-local-adpstyle5.a2m # 1moh read from 1flp-T0287-fssp-local-adpstyle5.a2m # found chain 1moh in template set Warning: unaligning (T0287)M133 because last residue in template chain is (1moh)M142 T0287 21 :KLIESLQENELLNTDEKKKII 1moh 45 :GLFSGAAKGTVKNTPEMAAQA T0287 42 :DQIKTMHDFFKQM 1moh 67 :SFKGLVSNWVDNL T0287 56 :TNKGALDKVLRNYMKDYRAV 1moh 80 :DNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1moh 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 114 :DRSILGIFLPFFSKPIMFK 1moh 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4294 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_395695678.pdb -s /var/tmp/to_scwrl_395695678.seq -o /var/tmp/from_scwrl_395695678.pdb > /var/tmp/scwrl_395695678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_395695678.pdb Number of alignments=597 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1moh-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1moh-T0287-t2k-global-adpstyle1.a2m # 1moh read from 1moh-T0287-t2k-global-adpstyle1.a2m # found chain 1moh in template set Warning: unaligning (T0287)I129 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1moh 25 :GPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1moh 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSKP 1moh 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 3 number of extra gaps= 0 total=4297 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1689579883.pdb -s /var/tmp/to_scwrl_1689579883.seq -o /var/tmp/from_scwrl_1689579883.pdb > /var/tmp/scwrl_1689579883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1689579883.pdb Number of alignments=598 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1moh-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1moh-T0287-t2k-global-adpstyle5.a2m # 1moh read from 1moh-T0287-t2k-global-adpstyle5.a2m # found chain 1moh in template set Warning: unaligning (T0287)I129 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1moh 25 :GPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1moh 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSKP 1moh 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 3 number of extra gaps= 0 total=4300 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_591601432.pdb -s /var/tmp/to_scwrl_591601432.seq -o /var/tmp/from_scwrl_591601432.pdb > /var/tmp/scwrl_591601432.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_591601432.pdb Number of alignments=599 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1moh-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1moh-T0287-t2k-local-adpstyle1.a2m # 1moh read from 1moh-T0287-t2k-local-adpstyle1.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1moh 29 :FMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLL 1moh 100 :GISAGQLEAAFKVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4302 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1870020935.pdb -s /var/tmp/to_scwrl_1870020935.seq -o /var/tmp/from_scwrl_1870020935.pdb > /var/tmp/scwrl_1870020935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1870020935.pdb Number of alignments=600 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1moh-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1moh-T0287-t2k-local-adpstyle5.a2m # 1moh read from 1moh-T0287-t2k-local-adpstyle5.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1moh 29 :FMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLE 1moh 100 :GISAGQLEAAFKVLS Number of specific fragments extracted= 2 number of extra gaps= 0 total=4304 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1811037738.pdb -s /var/tmp/to_scwrl_1811037738.seq -o /var/tmp/from_scwrl_1811037738.pdb > /var/tmp/scwrl_1811037738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1811037738.pdb Number of alignments=601 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-simplesw-adpstyle1.a2m # 1moh read from T0287-1moh-simplesw-adpstyle1.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1moh 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4306 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1281725501.pdb -s /var/tmp/to_scwrl_1281725501.seq -o /var/tmp/from_scwrl_1281725501.pdb > /var/tmp/scwrl_1281725501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281725501.pdb Number of alignments=602 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-simplesw-adpstyle5.a2m # 1moh read from T0287-1moh-simplesw-adpstyle5.a2m # found chain 1moh in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 69 :KGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1moh 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4308 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1676932506.pdb -s /var/tmp/to_scwrl_1676932506.seq -o /var/tmp/from_scwrl_1676932506.pdb > /var/tmp/scwrl_1676932506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1676932506.pdb Number of alignments=603 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-global-adpstyle1.a2m # 1moh read from T0287-1moh-t04-global-adpstyle1.a2m # found chain 1moh in template set Warning: unaligning (T0287)M191 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1moh 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1moh 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1moh 137 :EIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4313 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_495103971.pdb -s /var/tmp/to_scwrl_495103971.seq -o /var/tmp/from_scwrl_495103971.pdb > /var/tmp/scwrl_495103971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_495103971.pdb Number of alignments=604 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-global-adpstyle5.a2m # 1moh read from T0287-1moh-t04-global-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1moh 102 :SAGQLEAAFKVLS T0287 112 :KF 1moh 115 :GF T0287 142 :IELYGTNL 1moh 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1moh 125 :GAWTAVAGALMG T0287 186 :DLE 1moh 137 :EIE T0287 197 :QNA 1moh 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4321 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1437329191.pdb -s /var/tmp/to_scwrl_1437329191.seq -o /var/tmp/from_scwrl_1437329191.pdb > /var/tmp/scwrl_1437329191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1437329191.pdb Number of alignments=605 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEK 1moh 28 :FFMALFDAHDDVFA T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 46 :LFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1moh 116 :FMKSYGGDEGAWTAVAGALMGE T0287 187 :L 1moh 138 :I T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 7 number of extra gaps= 0 total=4328 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_576585095.pdb -s /var/tmp/to_scwrl_576585095.seq -o /var/tmp/from_scwrl_576585095.pdb > /var/tmp/scwrl_576585095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_576585095.pdb Number of alignments=606 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 1 :M 1moh 1 :S T0287 3 :NNMRKLFSMI 1moh 8 :SNVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1moh 19 :AAWGTAGPEFFMALFD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1moh 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLL 1moh 121 :GGDEGAWTAVAGALMGEI T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4336 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1678057716.pdb -s /var/tmp/to_scwrl_1678057716.seq -o /var/tmp/from_scwrl_1678057716.pdb > /var/tmp/scwrl_1678057716.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1678057716.pdb Number of alignments=607 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-local-adpstyle1.a2m # 1moh read from T0287-1moh-t04-local-adpstyle1.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1moh 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4338 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1930729437.pdb -s /var/tmp/to_scwrl_1930729437.seq -o /var/tmp/from_scwrl_1930729437.pdb > /var/tmp/scwrl_1930729437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1930729437.pdb Number of alignments=608 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-local-adpstyle5.a2m # 1moh read from T0287-1moh-t04-local-adpstyle5.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1moh 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4340 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1006226388.pdb -s /var/tmp/to_scwrl_1006226388.seq -o /var/tmp/from_scwrl_1006226388.pdb > /var/tmp/scwrl_1006226388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006226388.pdb Number of alignments=609 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 6 :RKLFSMIADSKDKKEK 1moh 26 :PEFFMALFDAHDDVFA T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 46 :LFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=4343 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_999616289.pdb -s /var/tmp/to_scwrl_999616289.seq -o /var/tmp/from_scwrl_999616289.pdb > /var/tmp/scwrl_999616289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999616289.pdb Number of alignments=610 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSK 1moh 25 :GPEFFMALFDAH T0287 20 :EKLIESLQE 1moh 37 :DDVFAKFSG T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1moh 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4348 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2047442860.pdb -s /var/tmp/to_scwrl_2047442860.seq -o /var/tmp/from_scwrl_2047442860.pdb > /var/tmp/scwrl_2047442860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2047442860.pdb Number of alignments=611 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-global-adpstyle1.a2m # 1moh read from T0287-1moh-t06-global-adpstyle1.a2m # found chain 1moh in template set Warning: unaligning (T0287)M191 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1moh 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1moh 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1moh 137 :EIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4353 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_973479350.pdb -s /var/tmp/to_scwrl_973479350.seq -o /var/tmp/from_scwrl_973479350.pdb > /var/tmp/scwrl_973479350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973479350.pdb Number of alignments=612 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-global-adpstyle5.a2m # 1moh read from T0287-1moh-t06-global-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1moh 102 :SAGQLEAAFKVLS T0287 112 :KF 1moh 115 :GF T0287 142 :IELYGTNL 1moh 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1moh 125 :GAWTAVAGALMG T0287 186 :DLE 1moh 137 :EIE T0287 197 :QNA 1moh 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4361 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_289480531.pdb -s /var/tmp/to_scwrl_289480531.seq -o /var/tmp/from_scwrl_289480531.pdb > /var/tmp/scwrl_289480531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_289480531.pdb Number of alignments=613 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEK 1moh 28 :FFMALFDAHDDVFA T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 46 :LFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1moh 116 :FMKSYGGDEGAWTAVAGALMGE T0287 187 :L 1moh 138 :I T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 7 number of extra gaps= 0 total=4368 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_249522676.pdb -s /var/tmp/to_scwrl_249522676.seq -o /var/tmp/from_scwrl_249522676.pdb > /var/tmp/scwrl_249522676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_249522676.pdb Number of alignments=614 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 1 :M 1moh 1 :S T0287 3 :NNMRKLFSMI 1moh 8 :SNVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1moh 19 :AAWGTAGPEFFMALFD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1moh 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLL 1moh 121 :GGDEGAWTAVAGALMGEI T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4376 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1495363831.pdb -s /var/tmp/to_scwrl_1495363831.seq -o /var/tmp/from_scwrl_1495363831.pdb > /var/tmp/scwrl_1495363831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1495363831.pdb Number of alignments=615 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-local-adpstyle1.a2m # 1moh read from T0287-1moh-t06-local-adpstyle1.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1moh 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4378 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1456139060.pdb -s /var/tmp/to_scwrl_1456139060.seq -o /var/tmp/from_scwrl_1456139060.pdb > /var/tmp/scwrl_1456139060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1456139060.pdb Number of alignments=616 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-local-adpstyle5.a2m # 1moh read from T0287-1moh-t06-local-adpstyle5.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1moh 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4380 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_23823093.pdb -s /var/tmp/to_scwrl_23823093.seq -o /var/tmp/from_scwrl_23823093.pdb > /var/tmp/scwrl_23823093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_23823093.pdb Number of alignments=617 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 6 :RKLFSMIADSKDKKEK 1moh 26 :PEFFMALFDAHDDVFA T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 46 :LFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=4383 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2121685926.pdb -s /var/tmp/to_scwrl_2121685926.seq -o /var/tmp/from_scwrl_2121685926.pdb > /var/tmp/scwrl_2121685926.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2121685926.pdb Number of alignments=618 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSK 1moh 25 :GPEFFMALFDAH T0287 20 :EKLIESLQE 1moh 37 :DDVFAKFSG T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1moh 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4388 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_362012366.pdb -s /var/tmp/to_scwrl_362012366.seq -o /var/tmp/from_scwrl_362012366.pdb > /var/tmp/scwrl_362012366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_362012366.pdb Number of alignments=619 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-global-adpstyle1.a2m # 1moh read from T0287-1moh-t2k-global-adpstyle1.a2m # found chain 1moh in template set Warning: unaligning (T0287)M191 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1moh 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1moh 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1moh 137 :EIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4393 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1486156372.pdb -s /var/tmp/to_scwrl_1486156372.seq -o /var/tmp/from_scwrl_1486156372.pdb > /var/tmp/scwrl_1486156372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1486156372.pdb Number of alignments=620 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-global-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-global-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1moh 102 :SAGQLEAAFKVLS T0287 112 :KF 1moh 115 :GF T0287 142 :IELYGTNL 1moh 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1moh 125 :GAWTAVAGALMG T0287 186 :DLE 1moh 137 :EIE T0287 197 :QNA 1moh 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4401 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1038058202.pdb -s /var/tmp/to_scwrl_1038058202.seq -o /var/tmp/from_scwrl_1038058202.pdb > /var/tmp/scwrl_1038058202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038058202.pdb Number of alignments=621 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKK 1moh 28 :FFMALFDAHDDV T0287 23 :IESL 1moh 40 :FAKF T0287 27 :QENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1moh 51 :AKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 77 :KSIGVD 1moh 97 :KARGIS T0287 83 :KFKKVYRLLES 1moh 105 :QLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1moh 116 :FMKSYGGDEGAWTAVAGALMGE T0287 187 :L 1moh 138 :I T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 9 number of extra gaps= 0 total=4410 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1525468171.pdb -s /var/tmp/to_scwrl_1525468171.seq -o /var/tmp/from_scwrl_1525468171.pdb > /var/tmp/scwrl_1525468171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1525468171.pdb Number of alignments=622 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 1 :M 1moh 1 :S T0287 3 :NNMRKLFSMI 1moh 8 :SNVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1moh 19 :AAWGTAGPEFFMALFD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1moh 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLL 1moh 121 :GGDEGAWTAVAGALMGEI T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4418 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1077901450.pdb -s /var/tmp/to_scwrl_1077901450.seq -o /var/tmp/from_scwrl_1077901450.pdb > /var/tmp/scwrl_1077901450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1077901450.pdb Number of alignments=623 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-local-adpstyle1.a2m # 1moh read from T0287-1moh-t2k-local-adpstyle1.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1moh 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4420 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_441756978.pdb -s /var/tmp/to_scwrl_441756978.seq -o /var/tmp/from_scwrl_441756978.pdb > /var/tmp/scwrl_441756978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441756978.pdb Number of alignments=624 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-local-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-local-adpstyle5.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1moh 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4422 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1634936654.pdb -s /var/tmp/to_scwrl_1634936654.seq -o /var/tmp/from_scwrl_1634936654.pdb > /var/tmp/scwrl_1634936654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1634936654.pdb Number of alignments=625 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 27 :QENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 51 :AKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4424 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_345311836.pdb -s /var/tmp/to_scwrl_345311836.seq -o /var/tmp/from_scwrl_345311836.pdb > /var/tmp/scwrl_345311836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345311836.pdb Number of alignments=626 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSK 1moh 25 :GPEFFMALFDAH T0287 20 :EKLIESLQE 1moh 37 :DDVFAKFSG T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1moh 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4429 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_916915707.pdb -s /var/tmp/to_scwrl_916915707.seq -o /var/tmp/from_scwrl_916915707.pdb > /var/tmp/scwrl_916915707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_916915707.pdb Number of alignments=627 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1moh-t2k-muscle.a2m.gz # 1moh read from T0287-1moh-t2k-muscle.a2m.gz # found chain 1moh in template set Warning: unaligning (T0287)K194 because last residue in template chain is (1moh)M142 T0287 1 :MSN 1moh 2 :LEA T0287 42 :DQIKTMHDFFKQMHTNKGALD 1moh 5 :AQKSNVTSSWAKASAAWGTAG T0287 63 :KVLRNYMKDYRAVIK 1moh 27 :EFFMALFDAHDDVFA T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDR 1moh 42 :KFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSN T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1moh 75 :WVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKV T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1moh 113 :LSGFMKSYGGDEGAWTAVAGAL T0287 187 :LEKYMKE 1moh 135 :MGEIEPD Number of specific fragments extracted= 7 number of extra gaps= 0 total=4436 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2030632332.pdb -s /var/tmp/to_scwrl_2030632332.seq -o /var/tmp/from_scwrl_2030632332.pdb > /var/tmp/scwrl_2030632332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2030632332.pdb Number of alignments=628 # command:# Prefix for input files set to 1qdbA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-fssp-global-adpstyle5.a2m # 1qdbA read from 1qdbA-T0287-fssp-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 16 :KDKKEK 1qdbA 62 :SWKKTK T0287 24 :ESLQENELLN 1qdbA 68 :EYDSFTDMLA T0287 34 :TDEKKKIIDQIKTMHDFF 1qdbA 134 :SPDVPRLIEEDGELEYFT T0287 52 :KQMHTNKGALDKV 1qdbA 168 :ANCHDDKTAELKV T0287 66 :RNYM 1qdbA 182 :VPHL T0287 70 :KDYRAVIKSIGVDKFKKVYRL 1qdbA 219 :FKKTEWKDAKGADKTAMVVTL T0287 91 :LESETMELLHAIAENPNFLFS 1qdbA 309 :QEGSVKYSDHQVKENPLDSMD T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREM 1qdbA 350 :KYERKEFLNKVAFDNIGKAHLETGKAI T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLKT 1qdbA 380 :ASDEELKEVRKLIRHGQFKADMAIAAHGNYFH T0287 171 :IEQYN 1qdbA 438 :LAKHG T0287 176 :DYVR 1qdbA 445 :DYIA T0287 180 :DLLMKFDLEKYMKEK 1qdbA 458 :QKLAKVDIAALAAEK T0287 195 :GVQN 1qdbA 510 :SWNK Number of specific fragments extracted= 13 number of extra gaps= 0 total=4449 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2034891719.pdb -s /var/tmp/to_scwrl_2034891719.seq -o /var/tmp/from_scwrl_2034891719.pdb > /var/tmp/scwrl_2034891719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2034891719.pdb Number of alignments=629 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-fssp-local-adpstyle5.a2m # 1qdbA read from 1qdbA-T0287-fssp-local-adpstyle5.a2m # found chain 1qdbA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4449 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-t2k-global-adpstyle1.a2m # 1qdbA read from 1qdbA-T0287-t2k-global-adpstyle1.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKD 1qdbA 52 :WAKYYPRQFDSWKKTKE T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1qdbA 69 :YDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGHY T0287 62 :DKVLRNYMKDYRAVI 1qdbA 147 :LEYFTGKWAKYGSQI T0287 77 :KS 1qdbA 243 :NG T0287 79 :IGVDKFKKVYR 1qdbA 251 :AGVEGMIKYYD T0287 92 :ESETMELLHAIAENPNFL 1qdbA 262 :EINFSDWTHNISKTPMLK T0287 110 :FSKFDRSILGIF 1qdbA 285 :FEFWKSGIHGQK T0287 122 :LPFFS 1qdbA 323 :NPLDS T0287 127 :KPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1qdbA 344 :RGIVHQKYERKEFLNKVAFDNIGKAHLETGKAIE T0287 164 :FYANLKTIEQYNDYVRDLLMKFD 1qdbA 378 :AGASDEELKEVRKLIRHGQFKAD T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 11 number of extra gaps= 0 total=4460 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1508517138.pdb -s /var/tmp/to_scwrl_1508517138.seq -o /var/tmp/from_scwrl_1508517138.pdb > /var/tmp/scwrl_1508517138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1508517138.pdb Number of alignments=630 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-t2k-global-adpstyle5.a2m # 1qdbA read from 1qdbA-T0287-t2k-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKD 1qdbA 52 :WAKYYPRQFDSWKKTKE T0287 28 :ENELLNTDEKKKIID 1qdbA 69 :YDSFTDMLAKDPALV T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYM 1qdbA 101 :HYYALQDNVNSLRTGAPVDAKTGPLPT T0287 70 :KDYRAVIKSIGVDKF 1qdbA 135 :PDVPRLIEEDGELEY T0287 85 :KKVYR 1qdbA 257 :IKYYD T0287 92 :ESETMELLHAIAENPNFLFS 1qdbA 262 :EINFSDWTHNISKTPMLKAQ T0287 112 :KFDRSILGIF 1qdbA 284 :GFEFWKSGIH T0287 122 :LPFFS 1qdbA 323 :NPLDS T0287 127 :KPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1qdbA 344 :RGIVHQKYERKEFLNKVAFDNIGKAHLETGKAIE T0287 164 :FYANLKTIEQYNDYVRDLLMK 1qdbA 378 :AGASDEELKEVRKLIRHGQFK T0287 185 :FDLEKYMKEK 1qdbA 463 :VDIAALAAEK T0287 195 :GVQ 1qdbA 491 :GRA T0287 198 :NA 1qdbA 513 :KK Number of specific fragments extracted= 13 number of extra gaps= 0 total=4473 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1753169620.pdb -s /var/tmp/to_scwrl_1753169620.seq -o /var/tmp/from_scwrl_1753169620.pdb > /var/tmp/scwrl_1753169620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1753169620.pdb Number of alignments=631 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-t2k-local-adpstyle1.a2m # 1qdbA read from 1qdbA-T0287-t2k-local-adpstyle1.a2m # found chain 1qdbA in template set T0287 182 :LMKFDLEKYMKEK 1qdbA 460 :LAKVDIAALAAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4474 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-t2k-local-adpstyle5.a2m # 1qdbA read from 1qdbA-T0287-t2k-local-adpstyle5.a2m # found chain 1qdbA in template set T0287 83 :KFKKVYRLL 1qdbA 412 :APEETLRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4475 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-simplesw-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-simplesw-adpstyle1.a2m # found chain 1qdbA in template set T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4476 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1698445810.pdb -s /var/tmp/to_scwrl_1698445810.seq -o /var/tmp/from_scwrl_1698445810.pdb > /var/tmp/scwrl_1698445810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1698445810.pdb Number of alignments=632 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-simplesw-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-simplesw-adpstyle5.a2m # found chain 1qdbA in template set T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1qdbA 353 :RKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=4477 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_642758994.pdb -s /var/tmp/to_scwrl_642758994.seq -o /var/tmp/from_scwrl_642758994.pdb > /var/tmp/scwrl_642758994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642758994.pdb Number of alignments=633 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-global-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t04-global-adpstyle1.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDR 1qdbA 42 :GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAK T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQ 1qdbA 157 :YGSQIVNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEE T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1qdbA 202 :HQDKRTLVCAQCHVEYYFKKTEWKDA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4480 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1282618479.pdb -s /var/tmp/to_scwrl_1282618479.seq -o /var/tmp/from_scwrl_1282618479.pdb > /var/tmp/scwrl_1282618479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282618479.pdb Number of alignments=634 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-global-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 2 :SNNMRKLFSMIADSKDKKE 1qdbA 49 :SEEWAKYYPRQFDSWKKTK T0287 22 :LIES 1qdbA 68 :EYDS T0287 28 :ENELLNTDEKKK 1qdbA 72 :FTDMLAKDPALV T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1qdbA 84 :IAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTG T0287 83 :KFKKVYRLLESET 1qdbA 133 :KSPDVPRLIEEDG T0287 97 :EL 1qdbA 146 :EL T0287 104 :ENPNFLFSKFDRSILGI 1qdbA 148 :EYFTGKWAKYGSQIVNV T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLL 1qdbA 165 :IGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTL T0287 183 :MKFDLEKYMKEKGVQNA 1qdbA 211 :AQCHVEYYFKKTEWKDA Number of specific fragments extracted= 9 number of extra gaps= 0 total=4489 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_46066135.pdb -s /var/tmp/to_scwrl_46066135.seq -o /var/tmp/from_scwrl_46066135.pdb > /var/tmp/scwrl_46066135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46066135.pdb Number of alignments=635 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFS 1qdbA 42 :GIAGKEKSEE T0287 15 :SKDKKEKLIESLQENELLNT 1qdbA 52 :WAKYYPRQFDSWKKTKEYDS T0287 35 :DEKK 1qdbA 119 :DAKT T0287 39 :KIIDQIKTMHDF 1qdbA 139 :RLIEEDGELEYF T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFKKVY 1qdbA 181 :RVPHLNRGLQAAGLKTFEEST T0287 93 :SETMELLHAIAENPNFLFSK 1qdbA 202 :HQDKRTLVCAQCHVEYYFKK T0287 113 :FDRSILGIFLPF 1qdbA 230 :ADKTAMVVTLPW T0287 125 :FSKPIMFK 1qdbA 272 :ISKTPMLK T0287 133 :MSIREMDSQIELYGT 1qdbA 305 :MPYTQEGSVKYSDHQ T0287 148 :NLP 1qdbA 322 :ENP T0287 168 :LKTIEQY 1qdbA 325 :LDSMDQS T0287 175 :NDYVRDLL 1qdbA 340 :ESKLRGIV T0287 183 :MKFDLEKYMK 1qdbA 349 :QKYERKEFLN Number of specific fragments extracted= 14 number of extra gaps= 0 total=4503 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2080088185.pdb -s /var/tmp/to_scwrl_2080088185.seq -o /var/tmp/from_scwrl_2080088185.pdb > /var/tmp/scwrl_2080088185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2080088185.pdb Number of alignments=636 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :M 1qdbA 42 :G T0287 2 :SNNMRKLFSMIADSKD 1qdbA 53 :AKYYPRQFDSWKKTKE T0287 42 :DQIKTMHDF 1qdbA 139 :RLIEEDGEL T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFK 1qdbA 181 :RVPHLNRGLQAAGLKTFE T0287 86 :KVYRLL 1qdbA 203 :QDKRTL T0287 96 :MELLHAIAENPNFLFSKFD 1qdbA 253 :VEGMIKYYDEINFSDWTHN T0287 115 :RSILGIFLPFFSK 1qdbA 298 :VSCADCHMPYTQE T0287 128 :PIMFK 1qdbA 312 :SVKYS T0287 134 :SIREMDSQIEL 1qdbA 317 :DHQVKENPLDS T0287 146 :GT 1qdbA 336 :HR T0287 157 :MTDEEVN 1qdbA 380 :ASDEELK T0287 168 :LKTIEQYNDYVRDLLMK 1qdbA 417 :LRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 14 number of extra gaps= 0 total=4517 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1859203574.pdb -s /var/tmp/to_scwrl_1859203574.seq -o /var/tmp/from_scwrl_1859203574.pdb > /var/tmp/scwrl_1859203574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1859203574.pdb Number of alignments=637 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-local-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t04-local-adpstyle1.a2m # found chain 1qdbA in template set T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4518 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1724123851.pdb -s /var/tmp/to_scwrl_1724123851.seq -o /var/tmp/from_scwrl_1724123851.pdb > /var/tmp/scwrl_1724123851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724123851.pdb Number of alignments=638 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-local-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-local-adpstyle5.a2m # found chain 1qdbA in template set T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 351 :YERKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4519 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1863333975.pdb -s /var/tmp/to_scwrl_1863333975.seq -o /var/tmp/from_scwrl_1863333975.pdb > /var/tmp/scwrl_1863333975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1863333975.pdb Number of alignments=639 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHDFF 1qdbA 336 :HRESESKLRGIVHQKYERKEFL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=4521 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_717946315.pdb -s /var/tmp/to_scwrl_717946315.seq -o /var/tmp/from_scwrl_717946315.pdb > /var/tmp/scwrl_717946315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_717946315.pdb Number of alignments=640 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMH 1qdbA 334 :NCHRESESKLRGIVHQKYERKEFLN T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 359 :KVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA T0287 164 :FYANLKTIEQYNDYVRDLLMK 1qdbA 413 :PEETLRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=4525 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_576256494.pdb -s /var/tmp/to_scwrl_576256494.seq -o /var/tmp/from_scwrl_576256494.pdb > /var/tmp/scwrl_576256494.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_576256494.pdb Number of alignments=641 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-global-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t06-global-adpstyle1.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDR 1qdbA 42 :GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAK T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQ 1qdbA 157 :YGSQIVNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEE T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1qdbA 202 :HQDKRTLVCAQCHVEYYFKKTEWKDA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4528 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1763293188.pdb -s /var/tmp/to_scwrl_1763293188.seq -o /var/tmp/from_scwrl_1763293188.pdb > /var/tmp/scwrl_1763293188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1763293188.pdb Number of alignments=642 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-global-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 2 :SNNMRKLFSMIADSKDKKE 1qdbA 49 :SEEWAKYYPRQFDSWKKTK T0287 22 :LIES 1qdbA 68 :EYDS T0287 28 :ENELLNTDEKKK 1qdbA 72 :FTDMLAKDPALV T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1qdbA 84 :IAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTG T0287 83 :KFKKVYRLLESET 1qdbA 133 :KSPDVPRLIEEDG T0287 97 :EL 1qdbA 146 :EL T0287 104 :ENPNFLFSKFDRSILGI 1qdbA 148 :EYFTGKWAKYGSQIVNV T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLL 1qdbA 165 :IGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTL T0287 183 :MKFDLEKYMKEKGVQNA 1qdbA 211 :AQCHVEYYFKKTEWKDA Number of specific fragments extracted= 9 number of extra gaps= 0 total=4537 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1691425665.pdb -s /var/tmp/to_scwrl_1691425665.seq -o /var/tmp/from_scwrl_1691425665.pdb > /var/tmp/scwrl_1691425665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1691425665.pdb Number of alignments=643 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFS 1qdbA 42 :GIAGKEKSEE T0287 15 :SKDKKEKLIESLQENELLNT 1qdbA 52 :WAKYYPRQFDSWKKTKEYDS T0287 35 :DEKK 1qdbA 119 :DAKT T0287 39 :KIIDQIKTMHDF 1qdbA 139 :RLIEEDGELEYF T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFKKVY 1qdbA 181 :RVPHLNRGLQAAGLKTFEEST T0287 93 :SETMELLHAIAENPNFLFSK 1qdbA 202 :HQDKRTLVCAQCHVEYYFKK T0287 113 :FDRSILGIFLPF 1qdbA 230 :ADKTAMVVTLPW T0287 125 :FSKPIMFK 1qdbA 272 :ISKTPMLK T0287 133 :MSIREMDSQIELYGT 1qdbA 305 :MPYTQEGSVKYSDHQ T0287 148 :NLP 1qdbA 322 :ENP T0287 168 :LKTIEQY 1qdbA 325 :LDSMDQS T0287 175 :NDYVRDLL 1qdbA 340 :ESKLRGIV T0287 183 :MKFDLEKYMK 1qdbA 349 :QKYERKEFLN Number of specific fragments extracted= 14 number of extra gaps= 0 total=4551 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_865737025.pdb -s /var/tmp/to_scwrl_865737025.seq -o /var/tmp/from_scwrl_865737025.pdb > /var/tmp/scwrl_865737025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_865737025.pdb Number of alignments=644 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :M 1qdbA 42 :G T0287 2 :SNNMRKLFSMIADSKD 1qdbA 53 :AKYYPRQFDSWKKTKE T0287 42 :DQIKTMHDF 1qdbA 139 :RLIEEDGEL T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFK 1qdbA 181 :RVPHLNRGLQAAGLKTFE T0287 86 :KVYRLL 1qdbA 203 :QDKRTL T0287 96 :MELLHAIAENPNFLFSKFD 1qdbA 253 :VEGMIKYYDEINFSDWTHN T0287 115 :RSILGIFLPFFSK 1qdbA 298 :VSCADCHMPYTQE T0287 128 :PIMFK 1qdbA 312 :SVKYS T0287 134 :SIREMDSQIEL 1qdbA 317 :DHQVKENPLDS T0287 146 :GT 1qdbA 336 :HR T0287 157 :MTDEEVN 1qdbA 380 :ASDEELK T0287 168 :LKTIEQYNDYVRDLLMK 1qdbA 417 :LRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 14 number of extra gaps= 0 total=4565 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2012815864.pdb -s /var/tmp/to_scwrl_2012815864.seq -o /var/tmp/from_scwrl_2012815864.pdb > /var/tmp/scwrl_2012815864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012815864.pdb Number of alignments=645 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-local-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t06-local-adpstyle1.a2m # found chain 1qdbA in template set T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4566 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1039305850.pdb -s /var/tmp/to_scwrl_1039305850.seq -o /var/tmp/from_scwrl_1039305850.pdb > /var/tmp/scwrl_1039305850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039305850.pdb Number of alignments=646 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-local-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-local-adpstyle5.a2m # found chain 1qdbA in template set T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 351 :YERKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4567 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_174392438.pdb -s /var/tmp/to_scwrl_174392438.seq -o /var/tmp/from_scwrl_174392438.pdb > /var/tmp/scwrl_174392438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_174392438.pdb Number of alignments=647 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHDFF 1qdbA 336 :HRESESKLRGIVHQKYERKEFL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=4569 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2036638957.pdb -s /var/tmp/to_scwrl_2036638957.seq -o /var/tmp/from_scwrl_2036638957.pdb > /var/tmp/scwrl_2036638957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036638957.pdb Number of alignments=648 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMH 1qdbA 334 :NCHRESESKLRGIVHQKYERKEFLN T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 359 :KVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA T0287 164 :FYANLKTIEQYNDYVRDLLMK 1qdbA 413 :PEETLRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=4573 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1013508129.pdb -s /var/tmp/to_scwrl_1013508129.seq -o /var/tmp/from_scwrl_1013508129.pdb > /var/tmp/scwrl_1013508129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1013508129.pdb Number of alignments=649 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-global-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t2k-global-adpstyle1.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDR 1qdbA 42 :GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAK T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQ 1qdbA 157 :YGSQIVNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEE T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1qdbA 202 :HQDKRTLVCAQCHVEYYFKKTEWKDA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4576 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_536404805.pdb -s /var/tmp/to_scwrl_536404805.seq -o /var/tmp/from_scwrl_536404805.pdb > /var/tmp/scwrl_536404805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536404805.pdb Number of alignments=650 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-global-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 2 :SNNMRKLFSMIADSKDKKE 1qdbA 49 :SEEWAKYYPRQFDSWKKTK T0287 22 :LIES 1qdbA 68 :EYDS T0287 28 :ENELLNTDEKKK 1qdbA 72 :FTDMLAKDPALV T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1qdbA 84 :IAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTG T0287 83 :KFKKVYRLLESET 1qdbA 133 :KSPDVPRLIEEDG T0287 97 :EL 1qdbA 146 :EL T0287 104 :ENPNFLFSKFDRSILGI 1qdbA 148 :EYFTGKWAKYGSQIVNV T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLL 1qdbA 165 :IGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTL T0287 183 :MKFDLEKYMKEKGVQNA 1qdbA 211 :AQCHVEYYFKKTEWKDA Number of specific fragments extracted= 9 number of extra gaps= 0 total=4585 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1375311683.pdb -s /var/tmp/to_scwrl_1375311683.seq -o /var/tmp/from_scwrl_1375311683.pdb > /var/tmp/scwrl_1375311683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375311683.pdb Number of alignments=651 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKL 1qdbA 42 :GIAGKEKS T0287 13 :ADSKDKKEKLIESLQENELLNT 1qdbA 50 :EEWAKYYPRQFDSWKKTKEYDS T0287 35 :DEKK 1qdbA 119 :DAKT T0287 39 :KIIDQIKTMHDF 1qdbA 139 :RLIEEDGELEYF T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFKKV 1qdbA 181 :RVPHLNRGLQAAGLKTFEES T0287 92 :ESETMELLHAIAENPNFLFSK 1qdbA 201 :THQDKRTLVCAQCHVEYYFKK T0287 113 :FDRSILGIFLPF 1qdbA 230 :ADKTAMVVTLPW T0287 125 :FSKPIMFK 1qdbA 272 :ISKTPMLK T0287 133 :MSIREMDSQIELYGT 1qdbA 305 :MPYTQEGSVKYSDHQ T0287 148 :NLPL 1qdbA 322 :ENPL T0287 157 :MTDEEVNFYANLKTIEQYNDYVRDLL 1qdbA 336 :HRESESKLRGIVHQKYERKEFLNKVA Number of specific fragments extracted= 12 number of extra gaps= 0 total=4597 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2051566330.pdb -s /var/tmp/to_scwrl_2051566330.seq -o /var/tmp/from_scwrl_2051566330.pdb > /var/tmp/scwrl_2051566330.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2051566330.pdb Number of alignments=652 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :M 1qdbA 42 :G T0287 2 :SNNMRKLFSMIADSKD 1qdbA 53 :AKYYPRQFDSWKKTKE T0287 42 :DQIKTMHDF 1qdbA 139 :RLIEEDGEL T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFK 1qdbA 181 :RVPHLNRGLQAAGLKTFE T0287 86 :KVYRLL 1qdbA 203 :QDKRTL T0287 96 :MELLHAIAENPNFLFSKFD 1qdbA 253 :VEGMIKYYDEINFSDWTHN T0287 115 :RSILGIFLPFFSK 1qdbA 298 :VSCADCHMPYTQE T0287 128 :PIMFK 1qdbA 312 :SVKYS T0287 134 :SIREMDSQIEL 1qdbA 317 :DHQVKENPLDS T0287 146 :GT 1qdbA 336 :HR T0287 157 :MTDEEVN 1qdbA 380 :ASDEELK T0287 168 :LKTIEQYNDYVRDLLMK 1qdbA 417 :LRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 14 number of extra gaps= 0 total=4611 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2061872976.pdb -s /var/tmp/to_scwrl_2061872976.seq -o /var/tmp/from_scwrl_2061872976.pdb > /var/tmp/scwrl_2061872976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061872976.pdb Number of alignments=653 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-local-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t2k-local-adpstyle1.a2m # found chain 1qdbA in template set T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4612 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_305729487.pdb -s /var/tmp/to_scwrl_305729487.seq -o /var/tmp/from_scwrl_305729487.pdb > /var/tmp/scwrl_305729487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_305729487.pdb Number of alignments=654 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-local-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-local-adpstyle5.a2m # found chain 1qdbA in template set T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 351 :YERKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4613 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_345839661.pdb -s /var/tmp/to_scwrl_345839661.seq -o /var/tmp/from_scwrl_345839661.pdb > /var/tmp/scwrl_345839661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345839661.pdb Number of alignments=655 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 28 :ENELLNTDEKKKIIDQIKTMHDFF 1qdbA 334 :NCHRESESKLRGIVHQKYERKEFL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETME 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFK Number of specific fragments extracted= 2 number of extra gaps= 0 total=4615 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1549325983.pdb -s /var/tmp/to_scwrl_1549325983.seq -o /var/tmp/from_scwrl_1549325983.pdb > /var/tmp/scwrl_1549325983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1549325983.pdb Number of alignments=656 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMH 1qdbA 334 :NCHRESESKLRGIVHQKYERKEFLN T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 359 :KVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA T0287 164 :FYANLKTIEQYNDYVRDLLMK 1qdbA 413 :PEETLRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=4619 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_651041323.pdb -s /var/tmp/to_scwrl_651041323.seq -o /var/tmp/from_scwrl_651041323.pdb > /var/tmp/scwrl_651041323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_651041323.pdb Number of alignments=657 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-muscle.a2m.gz # 1qdbA read from T0287-1qdbA-t2k-muscle.a2m.gz # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKDKK 1qdbA 52 :WAKYYPRQFDSWKKTKEYD T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1qdbA 106 :QDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAKYGSQIVNVIGCANCHDDKTA T0287 91 :LESETMELLHAIAENPNFLFSKFDRS 1qdbA 178 :LKVRVPHLNRGLQAAGLKTFEESTHQ T0287 117 :ILGIFLPF 1qdbA 234 :AMVVTLPW T0287 125 :FSKPIMFKMSIREMDSQI 1qdbA 288 :WKSGIHGQKGVSCADCHM T0287 143 :ELYGTNLP 1qdbA 314 :KYSDHQVK T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1qdbA 365 :IGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=4626 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1262755367.pdb -s /var/tmp/to_scwrl_1262755367.seq -o /var/tmp/from_scwrl_1262755367.pdb > /var/tmp/scwrl_1262755367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1262755367.pdb Number of alignments=658 # command:# Prefix for input files set to 1qspA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-fssp-global-adpstyle5.a2m # 1qspA read from 1qspA-T0287-fssp-global-adpstyle5.a2m # found chain 1qspA in template set T0287 19 :KEKLIESLQENELLNTDEKKK 1qspA 5 :PSEIINWTILNEIISMDDDDS T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1qspA 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKN T0287 71 :DYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPF 1qspA 65 :FLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINID T0287 125 :FS 1qspA 120 :DD T0287 127 :KPIMFKMSIREMDSQIELYGTNLP 1qspA 137 :YLILIAKALNQSRLEFKLARIELS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4631 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1432474668.pdb -s /var/tmp/to_scwrl_1432474668.seq -o /var/tmp/from_scwrl_1432474668.pdb > /var/tmp/scwrl_1432474668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1432474668.pdb Number of alignments=659 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-fssp-local-adpstyle5.a2m # 1qspA read from 1qspA-T0287-fssp-local-adpstyle5.a2m # found chain 1qspA in template set T0287 26 :LQENELLNTDEKKK 1qspA 12 :TILNEIISMDDDDS T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1qspA 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKN T0287 71 :DYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1qspA 65 :FLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDE T0287 126 :SKPIMFKMSIREMDSQIELY 1qspA 136 :IYLILIAKALNQSRLEFKLA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4635 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_538449395.pdb -s /var/tmp/to_scwrl_538449395.seq -o /var/tmp/from_scwrl_538449395.pdb > /var/tmp/scwrl_538449395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_538449395.pdb Number of alignments=660 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-t2k-global-adpstyle1.a2m # 1qspA read from 1qspA-T0287-t2k-global-adpstyle1.a2m # found chain 1qspA in template set T0287 1 :M 1qspA 3 :T T0287 8 :LFSMIAD 1qspA 4 :IPSEIIN T0287 20 :EKLIESLQENELLNTDEKKKIIDQ 1qspA 11 :WTILNEIISMDDDDSDFSKGLIIQ T0287 50 :FFKQMHTNKGALDKVLR 1qspA 35 :FIDQAQTTFAQMQRQLD T0287 68 :YMKDYRAVIK 1qspA 52 :GEKNLTELDN T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1qspA 72 :ALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSI T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1qspA 112 :INGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKY Number of specific fragments extracted= 7 number of extra gaps= 0 total=4642 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_623788860.pdb -s /var/tmp/to_scwrl_623788860.seq -o /var/tmp/from_scwrl_623788860.pdb > /var/tmp/scwrl_623788860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623788860.pdb Number of alignments=661 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-t2k-global-adpstyle5.a2m # 1qspA read from 1qspA-T0287-t2k-global-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MS 1qspA 3 :TI T0287 9 :FSMIAD 1qspA 5 :PSEIIN T0287 20 :EKLIESLQENELLNTDEKKKIIDQ 1qspA 11 :WTILNEIISMDDDDSDFSKGLIIQ T0287 50 :FFKQMHTNKGALDKVLR 1qspA 35 :FIDQAQTTFAQMQRQLD T0287 68 :YMKDYRAVI 1qspA 52 :GEKNLTELD T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1qspA 71 :AALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSI T0287 146 :GTN 1qspA 114 :GIN T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1qspA 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFKLA T0287 184 :KFDLEKYMKE 1qspA 156 :RIELSKYYNT T0287 198 :NA 1qspA 166 :NL Number of specific fragments extracted= 10 number of extra gaps= 0 total=4652 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1038160642.pdb -s /var/tmp/to_scwrl_1038160642.seq -o /var/tmp/from_scwrl_1038160642.pdb > /var/tmp/scwrl_1038160642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038160642.pdb Number of alignments=662 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-t2k-local-adpstyle1.a2m # 1qspA read from 1qspA-T0287-t2k-local-adpstyle1.a2m # found chain 1qspA in template set T0287 47 :MHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQ T0287 81 :VDKFKKVYRLL 1qspA 53 :EKNLTELDNLG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4654 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_89411558.pdb -s /var/tmp/to_scwrl_89411558.seq -o /var/tmp/from_scwrl_89411558.pdb > /var/tmp/scwrl_89411558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_89411558.pdb Number of alignments=663 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-t2k-local-adpstyle5.a2m # 1qspA read from 1qspA-T0287-t2k-local-adpstyle5.a2m # found chain 1qspA in template set T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1qspA 17 :IISMDDDDSDFSKGLIIQFIDQAQTTFAQMQ T0287 81 :VDKFKKV 1qspA 53 :EKNLTEL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4656 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1266547853.pdb -s /var/tmp/to_scwrl_1266547853.seq -o /var/tmp/from_scwrl_1266547853.pdb > /var/tmp/scwrl_1266547853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1266547853.pdb Number of alignments=664 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-simplesw-adpstyle1.a2m # 1qspA read from T0287-1qspA-simplesw-adpstyle1.a2m # found chain 1qspA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1qspA 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=4657 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_173295474.pdb -s /var/tmp/to_scwrl_173295474.seq -o /var/tmp/from_scwrl_173295474.pdb > /var/tmp/scwrl_173295474.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_173295474.pdb Number of alignments=665 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-simplesw-adpstyle5.a2m # 1qspA read from T0287-1qspA-simplesw-adpstyle5.a2m # found chain 1qspA in template set T0287 28 :ENELLNTDEKKKIIDQI 1qspA 99 :KTELVNTLSDKSIINGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=4658 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-global-adpstyle1.a2m # 1qspA read from T0287-1qspA-t04-global-adpstyle1.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1qspA 71 :AALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREMDSQI 1qspA 114 :GINIDEDDEEI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4664 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_135477693.pdb -s /var/tmp/to_scwrl_135477693.seq -o /var/tmp/from_scwrl_135477693.pdb > /var/tmp/scwrl_135477693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_135477693.pdb Number of alignments=666 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-global-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-global-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREMDSQIEL 1qspA 113 :NGINIDEDDEEIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4670 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1199152391.pdb -s /var/tmp/to_scwrl_1199152391.seq -o /var/tmp/from_scwrl_1199152391.pdb > /var/tmp/scwrl_1199152391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199152391.pdb Number of alignments=667 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVY 1qspA 58 :ELDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 0 total=4678 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2032499049.pdb -s /var/tmp/to_scwrl_2032499049.seq -o /var/tmp/from_scwrl_2032499049.pdb > /var/tmp/scwrl_2032499049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2032499049.pdb Number of alignments=668 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :M 1qspA 3 :T T0287 2 :SNNMRKLFSMIADSKDKKEKLIE 1qspA 11 :WTILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYMK 1qspA 154 :LARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 0 total=4688 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1859601545.pdb -s /var/tmp/to_scwrl_1859601545.seq -o /var/tmp/from_scwrl_1859601545.pdb > /var/tmp/scwrl_1859601545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1859601545.pdb Number of alignments=669 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-local-adpstyle1.a2m # 1qspA read from T0287-1qspA-t04-local-adpstyle1.a2m # found chain 1qspA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1qspA 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=4689 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_915002720.pdb -s /var/tmp/to_scwrl_915002720.seq -o /var/tmp/from_scwrl_915002720.pdb > /var/tmp/scwrl_915002720.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_915002720.pdb Number of alignments=670 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-local-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-local-adpstyle5.a2m # found chain 1qspA in template set T0287 93 :SETMELLHAIAENPNFLFSKFDRSIL 1qspA 87 :NLGRKMEHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=4690 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_602961717.pdb -s /var/tmp/to_scwrl_602961717.seq -o /var/tmp/from_scwrl_602961717.pdb > /var/tmp/scwrl_602961717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602961717.pdb Number of alignments=671 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVY 1qspA 58 :ELDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFY 1qspA 131 :KDENSIY Number of specific fragments extracted= 6 number of extra gaps= 0 total=4696 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_288374392.pdb -s /var/tmp/to_scwrl_288374392.seq -o /var/tmp/from_scwrl_288374392.pdb > /var/tmp/scwrl_288374392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_288374392.pdb Number of alignments=672 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 3 :NNMRKLFSMIADSKDKKEKLIE 1qspA 12 :TILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYM 1qspA 154 :LARIELSKYY Number of specific fragments extracted= 8 number of extra gaps= 0 total=4704 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_530812262.pdb -s /var/tmp/to_scwrl_530812262.seq -o /var/tmp/from_scwrl_530812262.pdb > /var/tmp/scwrl_530812262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530812262.pdb Number of alignments=673 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-global-adpstyle1.a2m # 1qspA read from T0287-1qspA-t06-global-adpstyle1.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1qspA 71 :AALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREMDSQI 1qspA 114 :GINIDEDDEEI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4710 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_146903735.pdb -s /var/tmp/to_scwrl_146903735.seq -o /var/tmp/from_scwrl_146903735.pdb > /var/tmp/scwrl_146903735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_146903735.pdb Number of alignments=674 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-global-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-global-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREMDSQIEL 1qspA 113 :NGINIDEDDEEIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4716 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1154111416.pdb -s /var/tmp/to_scwrl_1154111416.seq -o /var/tmp/from_scwrl_1154111416.pdb > /var/tmp/scwrl_1154111416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1154111416.pdb Number of alignments=675 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVY 1qspA 58 :ELDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 0 total=4724 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_396144479.pdb -s /var/tmp/to_scwrl_396144479.seq -o /var/tmp/from_scwrl_396144479.pdb > /var/tmp/scwrl_396144479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_396144479.pdb Number of alignments=676 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :M 1qspA 3 :T T0287 2 :SNNMRKLFSMIADSKDKKEKLIE 1qspA 11 :WTILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYMK 1qspA 154 :LARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 0 total=4734 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1186209585.pdb -s /var/tmp/to_scwrl_1186209585.seq -o /var/tmp/from_scwrl_1186209585.pdb > /var/tmp/scwrl_1186209585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1186209585.pdb Number of alignments=677 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-local-adpstyle1.a2m # 1qspA read from T0287-1qspA-t06-local-adpstyle1.a2m # found chain 1qspA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1qspA 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=4735 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1328503855.pdb -s /var/tmp/to_scwrl_1328503855.seq -o /var/tmp/from_scwrl_1328503855.pdb > /var/tmp/scwrl_1328503855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328503855.pdb Number of alignments=678 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-local-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-local-adpstyle5.a2m # found chain 1qspA in template set T0287 93 :SETMELLHAIAENPNFLFSKFDRSIL 1qspA 87 :NLGRKMEHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=4736 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_285299790.pdb -s /var/tmp/to_scwrl_285299790.seq -o /var/tmp/from_scwrl_285299790.pdb > /var/tmp/scwrl_285299790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285299790.pdb Number of alignments=679 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVY 1qspA 58 :ELDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFY 1qspA 131 :KDENSIY Number of specific fragments extracted= 6 number of extra gaps= 0 total=4742 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_52234067.pdb -s /var/tmp/to_scwrl_52234067.seq -o /var/tmp/from_scwrl_52234067.pdb > /var/tmp/scwrl_52234067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_52234067.pdb Number of alignments=680 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 3 :NNMRKLFSMIADSKDKKEKLIE 1qspA 12 :TILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYM 1qspA 154 :LARIELSKYY Number of specific fragments extracted= 8 number of extra gaps= 0 total=4750 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1864908660.pdb -s /var/tmp/to_scwrl_1864908660.seq -o /var/tmp/from_scwrl_1864908660.pdb > /var/tmp/scwrl_1864908660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864908660.pdb Number of alignments=681 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-global-adpstyle1.a2m # 1qspA read from T0287-1qspA-t2k-global-adpstyle1.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1qspA 71 :AALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREMDSQI 1qspA 114 :GINIDEDDEEI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4756 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1660611473.pdb -s /var/tmp/to_scwrl_1660611473.seq -o /var/tmp/from_scwrl_1660611473.pdb > /var/tmp/scwrl_1660611473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1660611473.pdb Number of alignments=682 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-global-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-global-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREMDSQIEL 1qspA 113 :NGINIDEDDEEIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4762 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2103800398.pdb -s /var/tmp/to_scwrl_2103800398.seq -o /var/tmp/from_scwrl_2103800398.pdb > /var/tmp/scwrl_2103800398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2103800398.pdb Number of alignments=683 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVY 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 0 total=4770 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1779297989.pdb -s /var/tmp/to_scwrl_1779297989.seq -o /var/tmp/from_scwrl_1779297989.pdb > /var/tmp/scwrl_1779297989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1779297989.pdb Number of alignments=684 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :M 1qspA 3 :T T0287 2 :SNNMRKLFSMIADSKDKKEKLIE 1qspA 11 :WTILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYMK 1qspA 154 :LARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 0 total=4780 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1966340960.pdb -s /var/tmp/to_scwrl_1966340960.seq -o /var/tmp/from_scwrl_1966340960.pdb > /var/tmp/scwrl_1966340960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1966340960.pdb Number of alignments=685 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-local-adpstyle1.a2m # 1qspA read from T0287-1qspA-t2k-local-adpstyle1.a2m # found chain 1qspA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1qspA 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=4781 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_302156412.pdb -s /var/tmp/to_scwrl_302156412.seq -o /var/tmp/from_scwrl_302156412.pdb > /var/tmp/scwrl_302156412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_302156412.pdb Number of alignments=686 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-local-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-local-adpstyle5.a2m # found chain 1qspA in template set T0287 93 :SETMELLHAIAENPNFLFSKFDRSIL 1qspA 87 :NLGRKMEHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=4782 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1181140325.pdb -s /var/tmp/to_scwrl_1181140325.seq -o /var/tmp/from_scwrl_1181140325.pdb > /var/tmp/scwrl_1181140325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1181140325.pdb Number of alignments=687 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVY 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN Number of specific fragments extracted= 6 number of extra gaps= 0 total=4788 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_469898636.pdb -s /var/tmp/to_scwrl_469898636.seq -o /var/tmp/from_scwrl_469898636.pdb > /var/tmp/scwrl_469898636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_469898636.pdb Number of alignments=688 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 3 :NNMRKLFSMIADSKDKKEKLIE 1qspA 12 :TILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYM 1qspA 154 :LARIELSKYY Number of specific fragments extracted= 8 number of extra gaps= 0 total=4796 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1564911780.pdb -s /var/tmp/to_scwrl_1564911780.seq -o /var/tmp/from_scwrl_1564911780.pdb > /var/tmp/scwrl_1564911780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1564911780.pdb Number of alignments=689 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-muscle.a2m.gz # 1qspA read from T0287-1qspA-t2k-muscle.a2m.gz # found chain 1qspA in template set Warning: unaligning (T0287)Q173 because last residue in template chain is (1qspA)L167 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHT 1qspA 3 :TIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTN Number of specific fragments extracted= 2 number of extra gaps= 0 total=4798 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_466131347.pdb -s /var/tmp/to_scwrl_466131347.seq -o /var/tmp/from_scwrl_466131347.pdb > /var/tmp/scwrl_466131347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466131347.pdb Number of alignments=690 # command:# Prefix for input files set to 1tmxA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t04-global-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t04-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)N4 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 6 :RKLFSMIADSKDKKEKLIESLQEN 1tmxA 4 :PVSAEQQAREQDLVERVLRSFDAT T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1tmxA 28 :ADPRLKQVMQALTRHLHAFLREVRLTEAEW T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1tmxA 58 :ETGIGFLTDAGHVTNERRQEFILLSDVLGASMQTIAMNNEAHGD T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSI 1tmxA 116 :SPRIESGGDIAGGAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 141 :QIELYGT 1tmxA 198 :PIPHDGP T0287 148 :NLPLLK 1tmxA 218 :RASHLH T0287 156 :VMTDEEVNFY 1tmxA 226 :VTAPGRRTLV T0287 168 :L 1tmxA 238 :I T0287 169 :KTIEQYND 1tmxA 246 :LDRDSVFG T0287 179 :RDLLMK 1tmxA 256 :DSLVKS T0287 187 :LE 1tmxA 264 :RQ T0287 191 :MK 1tmxA 268 :GA T0287 195 :GVQNA 1tmxA 272 :PGGRE Number of specific fragments extracted= 14 number of extra gaps= 7 total=4812 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1008348031.pdb -s /var/tmp/to_scwrl_1008348031.seq -o /var/tmp/from_scwrl_1008348031.pdb > /var/tmp/scwrl_1008348031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1008348031.pdb Number of alignments=691 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t04-global-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t04-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)N4 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 6 :RKLFSMIADSKDKKEKLIESLQEN 1tmxA 4 :PVSAEQQAREQDLVERVLRSFDAT T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKV 1tmxA 28 :ADPRLKQVMQALTRHLHAFLREVRLTEAEWETG T0287 65 :LRNYMKDYRAVIKSIGVDKF 1tmxA 71 :TNERRQEFILLSDVLGASMQ T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSI 1tmxA 91 :TIAMNNEAHGDATEATVFGPFFVEGSPRIES T0287 118 :LGIFLPFFSKPIMFKMSI 1tmxA 123 :GDIAGGAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :Y 1tmxA 197 :Y T0287 146 :GT 1tmxA 203 :GP T0287 148 :NLPLLK 1tmxA 218 :RASHLH T0287 156 :VMTDEEVNFY 1tmxA 226 :VTAPGRRTLV T0287 167 :NLKTIEQYND 1tmxA 244 :ELLDRDSVFG T0287 179 :RDLLMK 1tmxA 256 :DSLVKS T0287 187 :LE 1tmxA 264 :RQ T0287 191 :MK 1tmxA 268 :GA T0287 195 :GVQNA 1tmxA 289 :VLAPA Number of specific fragments extracted= 16 number of extra gaps= 7 total=4828 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_41216993.pdb -s /var/tmp/to_scwrl_41216993.seq -o /var/tmp/from_scwrl_41216993.pdb > /var/tmp/scwrl_41216993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_41216993.pdb Number of alignments=692 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t04-local-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t04-local-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 127 :KPIMFKMSI 1tmxA 132 :EPCWVEGTV T0287 138 :MD 1tmxA 143 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=4830 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t04-local-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t04-local-adpstyle5.a2m # found chain 1tmxA in training set T0287 85 :KKVYRLLESETMELLHAI 1tmxA 76 :QEFILLSDVLGASMQTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4831 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t06-global-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t06-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLN 1tmxA 13 :EQDLVERVLRSFDATADPRLKQVMQALTRHLHA T0287 40 :IIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1tmxA 46 :FLREVRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGASMQ T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRS 1tmxA 91 :TIAMNNEAHGDATEATVFGPFFVEGSPRIE T0287 117 :IL 1tmxA 175 :AR T0287 121 :F 1tmxA 179 :L T0287 122 :LPFFSK 1tmxA 218 :RASHLH T0287 130 :MFKMSIREMD 1tmxA 226 :VTAPGRRTLV T0287 142 :IELYGT 1tmxA 238 :IFVEGD T0287 150 :PLLKLFVMTD 1tmxA 244 :ELLDRDSVFG T0287 162 :VNFYAN 1tmxA 256 :DSLVKS T0287 170 :TI 1tmxA 264 :RQ T0287 174 :YN 1tmxA 268 :GA T0287 178 :VRDLLMKFDLEKYMKEKGVQNA 1tmxA 272 :PGGREIDGPWSRVRFDIVLAPA Number of specific fragments extracted= 13 number of extra gaps= 7 total=4844 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1504291988.pdb -s /var/tmp/to_scwrl_1504291988.seq -o /var/tmp/from_scwrl_1504291988.pdb > /var/tmp/scwrl_1504291988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1504291988.pdb Number of alignments=693 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t06-global-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t06-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIE 1tmxA 13 :EQDLVERVLRSFDATADPRLKQVM T0287 25 :SLQENEL 1tmxA 38 :ALTRHLH T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1tmxA 52 :LTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLG T0287 67 :NYM 1tmxA 88 :SMQ T0287 70 :KD 1tmxA 98 :AH T0287 72 :YRAVIKSIGVDKFKKVY 1tmxA 114 :EGSPRIESGGDIAGGAA T0287 89 :RLLESETMELLHA 1tmxA 146 :NPVPDARIEVWEA T0287 102 :IAENPNFL 1tmxA 167 :QYDDDRTA T0287 117 :IL 1tmxA 175 :AR T0287 119 :GIFLPFFSKPI 1tmxA 185 :GGYAFWAITPT T0287 130 :MFKMSIREMD 1tmxA 226 :VTAPGRRTLV T0287 142 :IELYGT 1tmxA 238 :IFVEGD T0287 150 :PLLKLFVMTD 1tmxA 244 :ELLDRDSVFG T0287 163 :NFYAN 1tmxA 257 :SLVKS T0287 170 :TI 1tmxA 264 :RQ T0287 174 :YN 1tmxA 268 :GA T0287 178 :VRDLLMKFDLEKYMKEKGVQNA 1tmxA 272 :PGGREIDGPWSRVRFDIVLAPA Number of specific fragments extracted= 17 number of extra gaps= 5 total=4861 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1097759588.pdb -s /var/tmp/to_scwrl_1097759588.seq -o /var/tmp/from_scwrl_1097759588.pdb > /var/tmp/scwrl_1097759588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1097759588.pdb Number of alignments=694 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t06-local-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t06-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSI 1tmxA 42 :HLHAFLREVRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGASMQTIAMNNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4862 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1307764846.pdb -s /var/tmp/to_scwrl_1307764846.seq -o /var/tmp/from_scwrl_1307764846.pdb > /var/tmp/scwrl_1307764846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1307764846.pdb Number of alignments=695 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t06-local-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t06-local-adpstyle5.a2m # found chain 1tmxA in training set T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFS 1tmxA 44 :HAFLREVRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=4863 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1677587462.pdb -s /var/tmp/to_scwrl_1677587462.seq -o /var/tmp/from_scwrl_1677587462.pdb > /var/tmp/scwrl_1677587462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1677587462.pdb Number of alignments=696 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t2k-global-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t2k-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLI 1tmxA 13 :EQDLVERVLRSFDATADPRLKQV T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1tmxA 44 :HAFLREVRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGASMQTIAM T0287 75 :VIKSIGVDKFKKVYRLLESETMELLHAI 1tmxA 113 :VEGSPRIESGGDIAGGAAGEPCWVEGTV T0287 105 :NPNFLFSKFDRSI 1tmxA 159 :DDDGFYDVQYDDD T0287 119 :GIFLPFFSKP 1tmxA 185 :GGYAFWAITP T0287 130 :MFKMSIREMD 1tmxA 226 :VTAPGRRTLV T0287 142 :IELYGT 1tmxA 238 :IFVEGD T0287 150 :PLLKLFVMTD 1tmxA 244 :ELLDRDSVFG T0287 162 :VNFYAN 1tmxA 256 :DSLVKS T0287 170 :TI 1tmxA 264 :RQ T0287 174 :YN 1tmxA 268 :GA T0287 178 :VRDLLMKFDLEKYMKEKGVQNA 1tmxA 272 :PGGREIDGPWSRVRFDIVLAPA Number of specific fragments extracted= 12 number of extra gaps= 6 total=4875 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1233237282.pdb -s /var/tmp/to_scwrl_1233237282.seq -o /var/tmp/from_scwrl_1233237282.pdb > /var/tmp/scwrl_1233237282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233237282.pdb Number of alignments=697 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t2k-global-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t2k-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQEN 1tmxA 13 :EQDLVERVLRSFDATADPRLKQVMQALTR T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1tmxA 50 :VRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGASMQTIAM T0287 75 :VIKSIGVDKFKKVYRLLESE 1tmxA 113 :VEGSPRIESGGDIAGGAAGE T0287 95 :TMELLHA 1tmxA 152 :RIEVWEA T0287 105 :NPNFLFSKFDRS 1tmxA 159 :DDDGFYDVQYDD T0287 117 :ILGIFLPFFSKPIMFKMSI 1tmxA 183 :PDGGYAFWAITPTPYPIPH T0287 136 :REMDSQIELYGTNLPLLK 1tmxA 206 :GRMLAATGRSPMRASHLH T0287 156 :VMTDEEVNFY 1tmxA 226 :VTAPGRRTLV T0287 168 :LKTIEQYND 1tmxA 245 :LLDRDSVFG T0287 179 :RDLLMK 1tmxA 256 :DSLVKS T0287 187 :LE 1tmxA 264 :RQ T0287 191 :MK 1tmxA 272 :PG T0287 193 :EKGV 1tmxA 278 :DGPW T0287 197 :QNA 1tmxA 291 :APA Number of specific fragments extracted= 14 number of extra gaps= 5 total=4889 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_359433591.pdb -s /var/tmp/to_scwrl_359433591.seq -o /var/tmp/from_scwrl_359433591.pdb > /var/tmp/scwrl_359433591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_359433591.pdb Number of alignments=698 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t2k-local-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t2k-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 61 :LDKVLRNYMKDYRAVIKSIGV 1tmxA 32 :LKQVMQALTRHLHAFLREVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4890 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1562602864.pdb -s /var/tmp/to_scwrl_1562602864.seq -o /var/tmp/from_scwrl_1562602864.pdb > /var/tmp/scwrl_1562602864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562602864.pdb Number of alignments=699 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t2k-local-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t2k-local-adpstyle5.a2m # found chain 1tmxA in training set T0287 84 :FKKVYRLLESETMELLHAIAENP 1tmxA 75 :RQEFILLSDVLGASMQTIAMNNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4891 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_945355181.pdb -s /var/tmp/to_scwrl_945355181.seq -o /var/tmp/from_scwrl_945355181.pdb > /var/tmp/scwrl_945355181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_945355181.pdb Number of alignments=700 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-simplesw-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-simplesw-adpstyle1.a2m # found chain 1tmxA in training set T0287 120 :IFLPFF 1tmxA 107 :VFGPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4892 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-simplesw-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-simplesw-adpstyle5.a2m # found chain 1tmxA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4892 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-global-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t04-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPI 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRI T0287 137 :EMDSQIELYGTNLPLLKLFVM 1tmxA 120 :ESGGDIAGGAAGEPCWVEGTV T0287 160 :EEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRTAAR T0287 196 :VQNA 1tmxA 179 :LLSG Number of specific fragments extracted= 8 number of extra gaps= 2 total=4900 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1274436310.pdb -s /var/tmp/to_scwrl_1274436310.seq -o /var/tmp/from_scwrl_1274436310.pdb > /var/tmp/scwrl_1274436310.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274436310.pdb Number of alignments=701 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-global-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 T0287 4 :NM 1tmxA 4 :PV T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 6 :SAEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAVI 1tmxA 62 :GFLTDAGHVT T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1tmxA 72 :NERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAG T0287 138 :MDSQ 1tmxA 137 :EGTV T0287 144 :LYGTNLPLLKLFVMTDEEVNFY 1tmxA 143 :TDGNPVPDARIEVWEADDDGFY T0287 180 :DLLMKFDLEKY 1tmxA 165 :DVQYDDDRTAA T0287 193 :E 1tmxA 176 :R Number of specific fragments extracted= 9 number of extra gaps= 2 total=4909 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_18080935.pdb -s /var/tmp/to_scwrl_18080935.seq -o /var/tmp/from_scwrl_18080935.pdb > /var/tmp/scwrl_18080935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_18080935.pdb Number of alignments=702 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEG T0287 126 :SKPIMFKMSI 1tmxA 131 :GEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 184 :KFDLEKYMKEKGVQN 1tmxA 202 :DGPVGRMLAATGRSP Number of specific fragments extracted= 11 number of extra gaps= 2 total=4920 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1233729572.pdb -s /var/tmp/to_scwrl_1233729572.seq -o /var/tmp/from_scwrl_1233729572.pdb > /var/tmp/scwrl_1233729572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233729572.pdb Number of alignments=703 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 185 :FDLEKYMKEKGVQN 1tmxA 203 :GPVGRMLAATGRSP Number of specific fragments extracted= 12 number of extra gaps= 2 total=4932 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1805248572.pdb -s /var/tmp/to_scwrl_1805248572.seq -o /var/tmp/from_scwrl_1805248572.pdb > /var/tmp/scwrl_1805248572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1805248572.pdb Number of alignments=704 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-local-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t04-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 120 :IFLPFF 1tmxA 107 :VFGPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4933 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-local-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-local-adpstyle5.a2m # found chain 1tmxA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4933 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDAT T0287 117 :ILGIFLPFFSKP 1tmxA 104 :EATVFGPFFVEG T0287 135 :IREMDSQIELYG 1tmxA 116 :SPRIESGGDIAG T0287 147 :TNLPLLKLFVM 1tmxA 130 :AGEPCWVEGTV T0287 160 :EEVN 1tmxA 143 :TDGN Number of specific fragments extracted= 8 number of extra gaps= 1 total=4941 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_164984670.pdb -s /var/tmp/to_scwrl_164984670.seq -o /var/tmp/from_scwrl_164984670.pdb > /var/tmp/scwrl_164984670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_164984670.pdb Number of alignments=705 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 146 :GTNLPLLKLFVMTDEE 1tmxA 145 :GNPVPDARIEVWEADD Number of specific fragments extracted= 8 number of extra gaps= 1 total=4949 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_240357342.pdb -s /var/tmp/to_scwrl_240357342.seq -o /var/tmp/from_scwrl_240357342.pdb > /var/tmp/scwrl_240357342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_240357342.pdb Number of alignments=706 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-global-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t06-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPI 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRI T0287 137 :EMDSQIELYGTNLPLLKLFVM 1tmxA 120 :ESGGDIAGGAAGEPCWVEGTV T0287 160 :EEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRTAAR T0287 196 :VQNA 1tmxA 179 :LLSG Number of specific fragments extracted= 8 number of extra gaps= 2 total=4957 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_53909405.pdb -s /var/tmp/to_scwrl_53909405.seq -o /var/tmp/from_scwrl_53909405.pdb > /var/tmp/scwrl_53909405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53909405.pdb Number of alignments=707 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-global-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 T0287 4 :NM 1tmxA 4 :PV T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 6 :SAEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAVI 1tmxA 62 :GFLTDAGHVT T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1tmxA 72 :NERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAG T0287 138 :MDSQ 1tmxA 137 :EGTV T0287 144 :LYGTNLPLLKLFVMTDEEVNFY 1tmxA 143 :TDGNPVPDARIEVWEADDDGFY T0287 180 :DLLMKFDLEKY 1tmxA 165 :DVQYDDDRTAA T0287 193 :E 1tmxA 176 :R Number of specific fragments extracted= 9 number of extra gaps= 2 total=4966 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1351194255.pdb -s /var/tmp/to_scwrl_1351194255.seq -o /var/tmp/from_scwrl_1351194255.pdb > /var/tmp/scwrl_1351194255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351194255.pdb Number of alignments=708 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEG T0287 126 :SKPIMFKMSI 1tmxA 131 :GEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 184 :KFDLEKYMKEKGVQN 1tmxA 202 :DGPVGRMLAATGRSP Number of specific fragments extracted= 11 number of extra gaps= 2 total=4977 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1568861197.pdb -s /var/tmp/to_scwrl_1568861197.seq -o /var/tmp/from_scwrl_1568861197.pdb > /var/tmp/scwrl_1568861197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1568861197.pdb Number of alignments=709 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 185 :FDLEKYMKEKGVQN 1tmxA 203 :GPVGRMLAATGRSP Number of specific fragments extracted= 12 number of extra gaps= 2 total=4989 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_339209195.pdb -s /var/tmp/to_scwrl_339209195.seq -o /var/tmp/from_scwrl_339209195.pdb > /var/tmp/scwrl_339209195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_339209195.pdb Number of alignments=710 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-local-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t06-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 120 :IFLPFF 1tmxA 107 :VFGPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4990 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-local-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-local-adpstyle5.a2m # found chain 1tmxA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4990 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDAT T0287 117 :ILGIFLPFFSKP 1tmxA 104 :EATVFGPFFVEG T0287 135 :IREMDSQIELYG 1tmxA 116 :SPRIESGGDIAG T0287 147 :TNLPLLKLFVM 1tmxA 130 :AGEPCWVEGTV T0287 160 :EEVN 1tmxA 143 :TDGN Number of specific fragments extracted= 8 number of extra gaps= 1 total=4998 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1403428323.pdb -s /var/tmp/to_scwrl_1403428323.seq -o /var/tmp/from_scwrl_1403428323.pdb > /var/tmp/scwrl_1403428323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1403428323.pdb Number of alignments=711 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 146 :GTNLPLLKLFVMTDEE 1tmxA 145 :GNPVPDARIEVWEADD Number of specific fragments extracted= 8 number of extra gaps= 1 total=5006 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1286286210.pdb -s /var/tmp/to_scwrl_1286286210.seq -o /var/tmp/from_scwrl_1286286210.pdb > /var/tmp/scwrl_1286286210.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1286286210.pdb Number of alignments=712 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-global-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t2k-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPI 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRI T0287 137 :EMDSQIELYGTNLPLLKLFVM 1tmxA 120 :ESGGDIAGGAAGEPCWVEGTV T0287 160 :EEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRTAAR T0287 196 :VQNA 1tmxA 179 :LLSG Number of specific fragments extracted= 8 number of extra gaps= 2 total=5014 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1999820668.pdb -s /var/tmp/to_scwrl_1999820668.seq -o /var/tmp/from_scwrl_1999820668.pdb > /var/tmp/scwrl_1999820668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1999820668.pdb Number of alignments=713 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-global-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 T0287 4 :NM 1tmxA 4 :PV T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 6 :SAEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAVI 1tmxA 62 :GFLTDAGHVT T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1tmxA 72 :NERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAG T0287 138 :MDSQ 1tmxA 137 :EGTV T0287 144 :LYGTNLPLLKLFVMTDEEVNFY 1tmxA 143 :TDGNPVPDARIEVWEADDDGFY T0287 180 :DLLMKFDLEKY 1tmxA 165 :DVQYDDDRTAA T0287 193 :E 1tmxA 176 :R Number of specific fragments extracted= 9 number of extra gaps= 2 total=5023 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1359745074.pdb -s /var/tmp/to_scwrl_1359745074.seq -o /var/tmp/from_scwrl_1359745074.pdb > /var/tmp/scwrl_1359745074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1359745074.pdb Number of alignments=714 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEG T0287 126 :SKPIMFKMSI 1tmxA 131 :GEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 146 :GTNLPLLKLFVMTDEEVNFYANL 1tmxA 145 :GNPVPDARIEVWEADDDGFYDVQ T0287 174 :YND 1tmxA 168 :YDD T0287 184 :KFDLEKYMKEKGVQ 1tmxA 202 :DGPVGRMLAATGRS Number of specific fragments extracted= 10 number of extra gaps= 1 total=5033 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_918100553.pdb -s /var/tmp/to_scwrl_918100553.seq -o /var/tmp/from_scwrl_918100553.pdb > /var/tmp/scwrl_918100553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_918100553.pdb Number of alignments=715 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 185 :FDLEKYMKEKGVQN 1tmxA 203 :GPVGRMLAATGRSP Number of specific fragments extracted= 12 number of extra gaps= 2 total=5045 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1818677981.pdb -s /var/tmp/to_scwrl_1818677981.seq -o /var/tmp/from_scwrl_1818677981.pdb > /var/tmp/scwrl_1818677981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1818677981.pdb Number of alignments=716 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-local-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t2k-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 120 :IFLPFF 1tmxA 107 :VFGPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5046 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-local-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-local-adpstyle5.a2m # found chain 1tmxA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5046 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRS 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEAT T0287 120 :IFLPFFSKP 1tmxA 107 :VFGPFFVEG T0287 135 :IREMDSQIELYG 1tmxA 116 :SPRIESGGDIAG T0287 147 :TNLPLLKLFVM 1tmxA 130 :AGEPCWVEGTV T0287 160 :EEVN 1tmxA 143 :TDGN Number of specific fragments extracted= 8 number of extra gaps= 1 total=5054 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1661901486.pdb -s /var/tmp/to_scwrl_1661901486.seq -o /var/tmp/from_scwrl_1661901486.pdb > /var/tmp/scwrl_1661901486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661901486.pdb Number of alignments=717 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 146 :GTNLPLLKLFVMTDEE 1tmxA 145 :GNPVPDARIEVWEADD Number of specific fragments extracted= 8 number of extra gaps= 1 total=5062 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2099240878.pdb -s /var/tmp/to_scwrl_2099240878.seq -o /var/tmp/from_scwrl_2099240878.pdb > /var/tmp/scwrl_2099240878.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2099240878.pdb Number of alignments=718 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-muscle.a2m.gz # 1tmxA read from T0287-1tmxA-t04-muscle.a2m.gz # found chain 1tmxA in training set Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)T170 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)K184 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1tmxA 70 :VTNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAGGAAGEPCWVEGT T0287 75 :V 1tmxA 140 :V T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNF 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRT T0287 109 :LF 1tmxA 175 :AR T0287 113 :FDRSILGIFLPFFSKPIMFKM 1tmxA 179 :LLSGPDGGYAFWAITPTPYPI T0287 134 :SIREMD 1tmxA 218 :RASHLH T0287 142 :IELYGTNLPL 1tmxA 226 :VTAPGRRTLV T0287 154 :LFVMTDEEVNFYANLK 1tmxA 238 :IFVEGDELLDRDSVFG T0287 172 :EQY 1tmxA 256 :DSL T0287 175 :N 1tmxA 261 :S T0287 178 :VR 1tmxA 264 :RQ T0287 182 :LM 1tmxA 268 :GA T0287 186 :DLEK 1tmxA 272 :PGGR T0287 190 :YMKEKGVQNA 1tmxA 284 :VRFDIVLAPA Number of specific fragments extracted= 14 number of extra gaps= 8 total=5076 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_141092970.pdb -s /var/tmp/to_scwrl_141092970.seq -o /var/tmp/from_scwrl_141092970.pdb > /var/tmp/scwrl_141092970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_141092970.pdb Number of alignments=719 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-muscle.a2m.gz # 1tmxA read from T0287-1tmxA-t06-muscle.a2m.gz # found chain 1tmxA in training set Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)K70 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNY 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAGGAAGEPCWVEGTV T0287 71 :DYRAVIKSIGVDKFKK 1tmxA 143 :TDGNPVPDARIEVWEA T0287 87 :VYRLLESETMELLH 1tmxA 163 :FYDVQYDDDRTAAR T0287 103 :AENPNFLFSKFDRSILGIFL 1tmxA 179 :LLSGPDGGYAFWAITPTPYP T0287 123 :PFFSKPIM 1tmxA 216 :PMRASHLH T0287 133 :MSIREMDSQI 1tmxA 226 :VTAPGRRTLV T0287 144 :LYGTNLPLLKLFVMTD 1tmxA 238 :IFVEGDELLDRDSVFG T0287 162 :VNFYAN 1tmxA 256 :DSLVKS T0287 170 :TI 1tmxA 264 :RQ T0287 174 :YN 1tmxA 268 :GA T0287 178 :VRDLLMKFDLEKYMKEKGVQNA 1tmxA 272 :PGGREIDGPWSRVRFDIVLAPA Number of specific fragments extracted= 11 number of extra gaps= 8 total=5087 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1079329619.pdb -s /var/tmp/to_scwrl_1079329619.seq -o /var/tmp/from_scwrl_1079329619.pdb > /var/tmp/scwrl_1079329619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1079329619.pdb Number of alignments=720 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-muscle.a2m.gz # 1tmxA read from T0287-1tmxA-t2k-muscle.a2m.gz # found chain 1tmxA in training set Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)K184 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1tmxA 36 :MQALTRHLHAFLREVRLTEAEWETGIG T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 1tmxA 95 :NNEAHGDATEATVFGPFFVEGSPRIESGGDIAGGAAGEPCWVEG T0287 74 :AV 1tmxA 139 :TV T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNF 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRT T0287 109 :LF 1tmxA 175 :AR T0287 113 :FDRSILGIFLPFFSKPIMFKMS 1tmxA 179 :LLSGPDGGYAFWAITPTPYPIP T0287 135 :IREMDSQ 1tmxA 217 :MRASHLH T0287 144 :LYGTNLPLLK 1tmxA 226 :VTAPGRRTLV T0287 156 :VMTDEEVNFYANLKTI 1tmxA 238 :IFVEGDELLDRDSVFG T0287 174 :YNDYVR 1tmxA 256 :DSLVKS T0287 182 :LM 1tmxA 264 :RQ T0287 185 :FDLEKYMKEKGVQNA 1tmxA 279 :GPWSRVRFDIVLAPA Number of specific fragments extracted= 12 number of extra gaps= 7 total=5099 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_417888578.pdb -s /var/tmp/to_scwrl_417888578.seq -o /var/tmp/from_scwrl_417888578.pdb > /var/tmp/scwrl_417888578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_417888578.pdb Number of alignments=721 # command:# Prefix for input files set to 1ytzT/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t04-global-adpstyle1.a2m # 1ytzT read from 1ytzT-T0287-t04-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)L109 because last residue in template chain is (1ytzT)S248 T0287 8 :LFSMIADSKDKKEKLIESL 1ytzT 160 :YSSYLAKADQKRGKKQTAR T0287 35 :DEKKKIIDQIK 1ytzT 179 :ETKKKVLAERR T0287 53 :QMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1ytzT 190 :KPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIK T0287 92 :ESETMELLHAIAENPNF 1ytzT 231 :KYEIVTLRNRIDQAQKH Number of specific fragments extracted= 4 number of extra gaps= 0 total=5103 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1149441000.pdb -s /var/tmp/to_scwrl_1149441000.seq -o /var/tmp/from_scwrl_1149441000.pdb > /var/tmp/scwrl_1149441000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1149441000.pdb Number of alignments=722 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t04-global-adpstyle5.a2m # 1ytzT read from 1ytzT-T0287-t04-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)L109 because last residue in template chain is (1ytzT)S248 T0287 8 :LFSMIADSKDKKEKLIESL 1ytzT 160 :YSSYLAKADQKRGKKQTAR T0287 35 :DEKKKIIDQIK 1ytzT 179 :ETKKKVLAERR T0287 52 :KQM 1ytzT 190 :KPL T0287 56 :TNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLES 1ytzT 193 :NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRK T0287 94 :ETMELLHAIAENPNF 1ytzT 233 :EIVTLRNRIDQAQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5108 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1120546612.pdb -s /var/tmp/to_scwrl_1120546612.seq -o /var/tmp/from_scwrl_1120546612.pdb > /var/tmp/scwrl_1120546612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120546612.pdb Number of alignments=723 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t04-local-adpstyle1.a2m # 1ytzT read from 1ytzT-T0287-t04-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 59 :GALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1ytzT 196 :HLNEDKLRDKAKELWDWLYQLQTEKYDFAEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=5109 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1922180566.pdb -s /var/tmp/to_scwrl_1922180566.seq -o /var/tmp/from_scwrl_1922180566.pdb > /var/tmp/scwrl_1922180566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1922180566.pdb Number of alignments=724 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t04-local-adpstyle5.a2m # 1ytzT read from 1ytzT-T0287-t04-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDK 1ytzT 200 :DKLRDKAKELWDWLYQLQTEKYDFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5110 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_99716942.pdb -s /var/tmp/to_scwrl_99716942.seq -o /var/tmp/from_scwrl_99716942.pdb > /var/tmp/scwrl_99716942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_99716942.pdb Number of alignments=725 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t2k-global-adpstyle1.a2m # 1ytzT read from 1ytzT-T0287-t2k-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)L22 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)L109 because last residue in template chain is (1ytzT)S248 T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESET 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKY T0287 96 :MELLHAIAENPNF 1ytzT 235 :VTLRNRIDQAQKH Number of specific fragments extracted= 2 number of extra gaps= 0 total=5112 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_280827812.pdb -s /var/tmp/to_scwrl_280827812.seq -o /var/tmp/from_scwrl_280827812.pdb > /var/tmp/scwrl_280827812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280827812.pdb Number of alignments=726 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t2k-global-adpstyle5.a2m # 1ytzT read from 1ytzT-T0287-t2k-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)L109 because last residue in template chain is (1ytzT)S248 T0287 8 :LFSMIAD 1ytzT 160 :YSSYLAK T0287 24 :ESLQENELLNTDEKKKII 1ytzT 167 :ADQKRGKKQTARETKKKV T0287 48 :HDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESE 1ytzT 185 :LAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKK T0287 95 :TMELLHAIAENPNF 1ytzT 234 :IVTLRNRIDQAQKH Number of specific fragments extracted= 4 number of extra gaps= 0 total=5116 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1452284382.pdb -s /var/tmp/to_scwrl_1452284382.seq -o /var/tmp/from_scwrl_1452284382.pdb > /var/tmp/scwrl_1452284382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452284382.pdb Number of alignments=727 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t2k-local-adpstyle1.a2m # 1ytzT read from 1ytzT-T0287-t2k-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 65 :LRNYMKDYRAVIKSIGVDKF 1ytzT 202 :LRDKAKELWDWLYQLQTEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5117 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1332954224.pdb -s /var/tmp/to_scwrl_1332954224.seq -o /var/tmp/from_scwrl_1332954224.pdb > /var/tmp/scwrl_1332954224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332954224.pdb Number of alignments=728 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t2k-local-adpstyle5.a2m # 1ytzT read from 1ytzT-T0287-t2k-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 51 :FKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1ytzT 188 :RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=5118 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_640261403.pdb -s /var/tmp/to_scwrl_640261403.seq -o /var/tmp/from_scwrl_640261403.pdb > /var/tmp/scwrl_640261403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_640261403.pdb Number of alignments=729 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-simplesw-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-simplesw-adpstyle1.a2m # found chain 1ytzT in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNK 1ytzT 177 :ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5119 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_867403600.pdb -s /var/tmp/to_scwrl_867403600.seq -o /var/tmp/from_scwrl_867403600.pdb > /var/tmp/scwrl_867403600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_867403600.pdb Number of alignments=730 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-simplesw-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-simplesw-adpstyle5.a2m # found chain 1ytzT in template set T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1ytzT 192 :LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5120 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_130825758.pdb -s /var/tmp/to_scwrl_130825758.seq -o /var/tmp/from_scwrl_130825758.pdb > /var/tmp/scwrl_130825758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_130825758.pdb Number of alignments=731 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-global-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t04-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)Y88 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKE 1ytzT 160 :YSSYLAKADQKRGKKQ T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 183 :KVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDKFKKV 1ytzT 230 :KKYEIVTLRNRIDQAQKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5123 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1914697714.pdb -s /var/tmp/to_scwrl_1914697714.seq -o /var/tmp/from_scwrl_1914697714.pdb > /var/tmp/scwrl_1914697714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914697714.pdb Number of alignments=732 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-global-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)V178 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIES 1ytzT 160 :YSSYLAKADQKRGKKQTARET T0287 26 :LQENELLNTD 1ytzT 186 :AERRKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDK 1ytzT 230 :KKYEIVTLRNRIDQ T0287 174 :YNDY 1ytzT 244 :AQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5128 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_885484535.pdb -s /var/tmp/to_scwrl_885484535.seq -o /var/tmp/from_scwrl_885484535.pdb > /var/tmp/scwrl_885484535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_885484535.pdb Number of alignments=733 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 29 :NELLNTD 1ytzT 189 :RKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :K 1ytzT 230 :K T0287 92 :ESETMELLHAIAENPNF 1ytzT 231 :KYEIVTLRNRIDQAQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5133 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1364555330.pdb -s /var/tmp/to_scwrl_1364555330.seq -o /var/tmp/from_scwrl_1364555330.pdb > /var/tmp/scwrl_1364555330.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1364555330.pdb Number of alignments=734 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 30 :EL 1ytzT 184 :VL T0287 32 :LNTDEK 1ytzT 197 :LNEDKL T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 203 :RDKAKELWDWLYQLQTEKYDFAEQIKR T0287 91 :LESETMELLHAIAENPN 1ytzT 230 :KKYEIVTLRNRIDQAQK T0287 125 :F 1ytzT 247 :H Number of specific fragments extracted= 6 number of extra gaps= 0 total=5139 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1572462639.pdb -s /var/tmp/to_scwrl_1572462639.seq -o /var/tmp/from_scwrl_1572462639.pdb > /var/tmp/scwrl_1572462639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1572462639.pdb Number of alignments=735 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-local-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t04-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNK 1ytzT 177 :ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5140 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1050469206.pdb -s /var/tmp/to_scwrl_1050469206.seq -o /var/tmp/from_scwrl_1050469206.pdb > /var/tmp/scwrl_1050469206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1050469206.pdb Number of alignments=736 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-local-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1ytzT 186 :AERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5141 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1604912673.pdb -s /var/tmp/to_scwrl_1604912673.seq -o /var/tmp/from_scwrl_1604912673.pdb > /var/tmp/scwrl_1604912673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1604912673.pdb Number of alignments=737 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENE 1ytzT 161 :SSYLAKADQKRGKKQTARETKKKVLAERR T0287 31 :LLNTD 1ytzT 191 :PLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVD 1ytzT 230 :KKYEIVTLRNRID Number of specific fragments extracted= 4 number of extra gaps= 0 total=5145 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1626372044.pdb -s /var/tmp/to_scwrl_1626372044.seq -o /var/tmp/from_scwrl_1626372044.pdb > /var/tmp/scwrl_1626372044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626372044.pdb Number of alignments=738 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set T0287 7 :KLFSMIADSKDKKEKLIESLQEN 1ytzT 166 :KADQKRGKKQTARETKKKVLAER T0287 32 :LNTDEKK 1ytzT 197 :LNEDKLR T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1ytzT 204 :DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=5148 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_254179814.pdb -s /var/tmp/to_scwrl_254179814.seq -o /var/tmp/from_scwrl_254179814.pdb > /var/tmp/scwrl_254179814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_254179814.pdb Number of alignments=739 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-global-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t06-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)Y88 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKE 1ytzT 160 :YSSYLAKADQKRGKKQ T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 183 :KVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDKFKKV 1ytzT 230 :KKYEIVTLRNRIDQAQKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5151 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1026290224.pdb -s /var/tmp/to_scwrl_1026290224.seq -o /var/tmp/from_scwrl_1026290224.pdb > /var/tmp/scwrl_1026290224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1026290224.pdb Number of alignments=740 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-global-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)V178 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIES 1ytzT 160 :YSSYLAKADQKRGKKQTARET T0287 26 :LQENELLNTD 1ytzT 186 :AERRKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDK 1ytzT 230 :KKYEIVTLRNRIDQ T0287 174 :YNDY 1ytzT 244 :AQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5156 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1965581239.pdb -s /var/tmp/to_scwrl_1965581239.seq -o /var/tmp/from_scwrl_1965581239.pdb > /var/tmp/scwrl_1965581239.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1965581239.pdb Number of alignments=741 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 29 :NELLNTD 1ytzT 189 :RKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :K 1ytzT 230 :K T0287 92 :ESETMELLHAIAENPNF 1ytzT 231 :KYEIVTLRNRIDQAQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5161 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1657608137.pdb -s /var/tmp/to_scwrl_1657608137.seq -o /var/tmp/from_scwrl_1657608137.pdb > /var/tmp/scwrl_1657608137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1657608137.pdb Number of alignments=742 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 30 :EL 1ytzT 184 :VL T0287 32 :LNTDEK 1ytzT 197 :LNEDKL T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 203 :RDKAKELWDWLYQLQTEKYDFAEQIKR T0287 91 :LESETMELLHAIAENPN 1ytzT 230 :KKYEIVTLRNRIDQAQK T0287 125 :F 1ytzT 247 :H Number of specific fragments extracted= 6 number of extra gaps= 0 total=5167 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_165092788.pdb -s /var/tmp/to_scwrl_165092788.seq -o /var/tmp/from_scwrl_165092788.pdb > /var/tmp/scwrl_165092788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_165092788.pdb Number of alignments=743 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-local-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t06-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNK 1ytzT 177 :ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5168 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1817918260.pdb -s /var/tmp/to_scwrl_1817918260.seq -o /var/tmp/from_scwrl_1817918260.pdb > /var/tmp/scwrl_1817918260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1817918260.pdb Number of alignments=744 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-local-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1ytzT 186 :AERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5169 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_869869565.pdb -s /var/tmp/to_scwrl_869869565.seq -o /var/tmp/from_scwrl_869869565.pdb > /var/tmp/scwrl_869869565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_869869565.pdb Number of alignments=745 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENE 1ytzT 161 :SSYLAKADQKRGKKQTARETKKKVLAERR T0287 31 :LLNTD 1ytzT 191 :PLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVD 1ytzT 230 :KKYEIVTLRNRID Number of specific fragments extracted= 4 number of extra gaps= 0 total=5173 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1083193340.pdb -s /var/tmp/to_scwrl_1083193340.seq -o /var/tmp/from_scwrl_1083193340.pdb > /var/tmp/scwrl_1083193340.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1083193340.pdb Number of alignments=746 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set T0287 7 :KLFSMIADSKDKKEKLIESLQEN 1ytzT 166 :KADQKRGKKQTARETKKKVLAER T0287 32 :LNTDEKK 1ytzT 197 :LNEDKLR T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1ytzT 204 :DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=5176 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1489112594.pdb -s /var/tmp/to_scwrl_1489112594.seq -o /var/tmp/from_scwrl_1489112594.pdb > /var/tmp/scwrl_1489112594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489112594.pdb Number of alignments=747 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-global-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t2k-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)Y88 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKE 1ytzT 160 :YSSYLAKADQKRGKKQ T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 183 :KVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDKFKKV 1ytzT 230 :KKYEIVTLRNRIDQAQKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5179 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_384287405.pdb -s /var/tmp/to_scwrl_384287405.seq -o /var/tmp/from_scwrl_384287405.pdb > /var/tmp/scwrl_384287405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_384287405.pdb Number of alignments=748 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-global-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)V178 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIES 1ytzT 160 :YSSYLAKADQKRGKKQTARET T0287 26 :LQENELLNTD 1ytzT 186 :AERRKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDK 1ytzT 230 :KKYEIVTLRNRIDQ T0287 174 :YNDY 1ytzT 244 :AQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5184 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1034950573.pdb -s /var/tmp/to_scwrl_1034950573.seq -o /var/tmp/from_scwrl_1034950573.pdb > /var/tmp/scwrl_1034950573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1034950573.pdb Number of alignments=749 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 29 :NELLNTD 1ytzT 189 :RKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 91 :LESETMELLHAIAENPNF 1ytzT 230 :KKYEIVTLRNRIDQAQKH Number of specific fragments extracted= 4 number of extra gaps= 0 total=5188 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1630205564.pdb -s /var/tmp/to_scwrl_1630205564.seq -o /var/tmp/from_scwrl_1630205564.pdb > /var/tmp/scwrl_1630205564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1630205564.pdb Number of alignments=750 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 30 :EL 1ytzT 184 :VL T0287 32 :LNTDEK 1ytzT 197 :LNEDKL T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 203 :RDKAKELWDWLYQLQTEKYDFAEQIKR T0287 91 :LESETMELLHAIAENPN 1ytzT 230 :KKYEIVTLRNRIDQAQK T0287 125 :F 1ytzT 247 :H Number of specific fragments extracted= 6 number of extra gaps= 0 total=5194 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1463617024.pdb -s /var/tmp/to_scwrl_1463617024.seq -o /var/tmp/from_scwrl_1463617024.pdb > /var/tmp/scwrl_1463617024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463617024.pdb Number of alignments=751 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-local-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t2k-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNK 1ytzT 177 :ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5195 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1452839150.pdb -s /var/tmp/to_scwrl_1452839150.seq -o /var/tmp/from_scwrl_1452839150.pdb > /var/tmp/scwrl_1452839150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452839150.pdb Number of alignments=752 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-local-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1ytzT 186 :AERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5196 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_632162918.pdb -s /var/tmp/to_scwrl_632162918.seq -o /var/tmp/from_scwrl_632162918.pdb > /var/tmp/scwrl_632162918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_632162918.pdb Number of alignments=753 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKKVLAERR T0287 31 :LLNTD 1ytzT 191 :PLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIG 1ytzT 230 :KKYEIVTLRNR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5200 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_436679991.pdb -s /var/tmp/to_scwrl_436679991.seq -o /var/tmp/from_scwrl_436679991.pdb > /var/tmp/scwrl_436679991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_436679991.pdb Number of alignments=754 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set T0287 7 :KLFSMIADSKDKKEKLIESLQEN 1ytzT 166 :KADQKRGKKQTARETKKKVLAER T0287 32 :LNTDEKK 1ytzT 197 :LNEDKLR T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1ytzT 204 :DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=5203 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1227536070.pdb -s /var/tmp/to_scwrl_1227536070.seq -o /var/tmp/from_scwrl_1227536070.pdb > /var/tmp/scwrl_1227536070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1227536070.pdb Number of alignments=755 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-muscle.a2m.gz # 1ytzT read from T0287-1ytzT-t04-muscle.a2m.gz # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 T0287 5 :MRKLFSMIADSKDKKEK 1ytzT 160 :YSSYLAKADQKRGKKQT T0287 33 :NTDEKKKIIDQIKTMHDF 1ytzT 177 :ARETKKKVLAERRKPLNI T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFK 1ytzT 195 :DHLNEDKLRDKAKELWDWLYQLQTEKYD T0287 109 :LFSKFDRS 1ytzT 223 :FAEQIKRK T0287 132 :KMSIREMDSQIE 1ytzT 231 :KYEIVTLRNRID T0287 186 :DLEKY 1ytzT 243 :QAQKH Number of specific fragments extracted= 6 number of extra gaps= 0 total=5209 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_731879861.pdb -s /var/tmp/to_scwrl_731879861.seq -o /var/tmp/from_scwrl_731879861.pdb > /var/tmp/scwrl_731879861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_731879861.pdb Number of alignments=756 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-muscle.a2m.gz # 1ytzT read from T0287-1ytzT-t2k-muscle.a2m.gz # found chain 1ytzT in template set T0287 1 :M 1ytzT 160 :Y T0287 11 :MIADSKDKKEK 1ytzT 161 :SSYLAKADQKR T0287 28 :ENELLNTDEKKKIIDQIKTMHDF 1ytzT 172 :GKKQTARETKKKVLAERRKPLNI T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESE 1ytzT 195 :DHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKK T0287 169 :KTIEQYNDYVRDL 1ytzT 232 :YEIVTLRNRIDQA T0287 196 :VQNA 1ytzT 245 :QKHS Number of specific fragments extracted= 6 number of extra gaps= 0 total=5215 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_717507803.pdb -s /var/tmp/to_scwrl_717507803.seq -o /var/tmp/from_scwrl_717507803.pdb > /var/tmp/scwrl_717507803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_717507803.pdb Number of alignments=757 # command:# Prefix for input files set to 1yz7A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t04-global-adpstyle1.a2m # 1yz7A read from 1yz7A-T0287-t04-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 1 :MSNNMRKLFSMIADSKDKK 1yz7A 99 :RAQKAENLLKLAAEKLGKD T0287 29 :NELLNTDEKKKIIDQIKTMHDFF 1yz7A 118 :FETAWREVWVPLEEEWGEVYAAF T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 1yz7A 141 :EDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPT T0287 134 :SIREMDSQIELYGT 1yz7A 208 :KEKDVEVKFTYLGA T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 222 :PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 5 number of extra gaps= 0 total=5220 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_532336806.pdb -s /var/tmp/to_scwrl_532336806.seq -o /var/tmp/from_scwrl_532336806.pdb > /var/tmp/scwrl_532336806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_532336806.pdb Number of alignments=758 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t04-global-adpstyle5.a2m # 1yz7A read from 1yz7A-T0287-t04-global-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 3 :NNMRKLFSMIADSKDKK 1yz7A 101 :QKAENLLKLAAEKLGKD T0287 29 :NELLNTDEKKKIIDQIKTMHDFF 1yz7A 118 :FETAWREVWVPLEEEWGEVYAAF T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 1yz7A 141 :EDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPT T0287 136 :REM 1yz7A 176 :VTI T0287 139 :DSQIELYGTNLP 1yz7A 211 :DVEVKFTYLGAP T0287 154 :LFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 223 :RYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=5226 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2064834085.pdb -s /var/tmp/to_scwrl_2064834085.seq -o /var/tmp/from_scwrl_2064834085.pdb > /var/tmp/scwrl_2064834085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2064834085.pdb Number of alignments=759 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t04-local-adpstyle1.a2m # 1yz7A read from 1yz7A-T0287-t04-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 39 :KIIDQIKTMHDFFKQMHTN 1yz7A 128 :PLEEEWGEVYAAFEDAAKD T0287 58 :KGALDKVLRNYMKDY 1yz7A 148 :IDVLKGHVPDEWLPV Number of specific fragments extracted= 2 number of extra gaps= 0 total=5228 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1357769206.pdb -s /var/tmp/to_scwrl_1357769206.seq -o /var/tmp/from_scwrl_1357769206.pdb > /var/tmp/scwrl_1357769206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1357769206.pdb Number of alignments=760 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t04-local-adpstyle5.a2m # 1yz7A read from 1yz7A-T0287-t04-local-adpstyle5.a2m # found chain 1yz7A in template set T0287 80 :GVDKFKKV 1yz7A 191 :GVEIIKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5229 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t2k-global-adpstyle1.a2m # 1yz7A read from 1yz7A-T0287-t2k-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 1 :MSNNMRKLFSMIADSKDKK 1yz7A 99 :RAQKAENLLKLAAEKLGKD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1yz7A 118 :FETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLK T0287 88 :YRLLESETMELLHAIAENPNFLFSKFDRSI 1yz7A 153 :GHVPDEWLPVLKEIIDNYVEVPTVTIDAEF T0287 118 :LGIFLPFFSKPIMFKMSIREMDSQIELYGT 1yz7A 192 :VEIIKEALIRARDRANKEKDVEVKFTYLGA T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 222 :PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 5 number of extra gaps= 0 total=5234 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1399740405.pdb -s /var/tmp/to_scwrl_1399740405.seq -o /var/tmp/from_scwrl_1399740405.pdb > /var/tmp/scwrl_1399740405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399740405.pdb Number of alignments=761 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t2k-global-adpstyle5.a2m # 1yz7A read from 1yz7A-T0287-t2k-global-adpstyle5.a2m # found chain 1yz7A in template set T0287 1 :MSNNMRKLFSMIADSKDKK 1yz7A 99 :RAQKAENLLKLAAEKLGKD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1yz7A 118 :FETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLK T0287 89 :RLLESETMELLHAIAEN 1yz7A 153 :GHVPDEWLPVLKEIIDN T0287 106 :PNFLFSKFDRSI 1yz7A 171 :VEVPTVTIDAEF T0287 118 :LGI 1yz7A 190 :NGV T0287 123 :PFFSKPIMFKMSI 1yz7A 193 :EIIKEALIRARDR T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 165 :YANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 234 :YKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 8 number of extra gaps= 0 total=5242 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_48176197.pdb -s /var/tmp/to_scwrl_48176197.seq -o /var/tmp/from_scwrl_48176197.pdb > /var/tmp/scwrl_48176197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_48176197.pdb Number of alignments=762 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t2k-local-adpstyle1.a2m # 1yz7A read from 1yz7A-T0287-t2k-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKV 1yz7A 128 :PLEEEWGEVYAAFEDAAKDGIDVLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=5243 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1124983273.pdb -s /var/tmp/to_scwrl_1124983273.seq -o /var/tmp/from_scwrl_1124983273.pdb > /var/tmp/scwrl_1124983273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1124983273.pdb Number of alignments=763 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t2k-local-adpstyle5.a2m # 1yz7A read from 1yz7A-T0287-t2k-local-adpstyle5.a2m # found chain 1yz7A in template set T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRN 1yz7A 128 :PLEEEWGEVYAAFEDAAKDGIDVLKGHVP T0287 70 :KD 1yz7A 157 :DE T0287 72 :YRAVIK 1yz7A 178 :IDAEFE T0287 78 :SIGVDKFKKVYR 1yz7A 189 :PNGVEIIKEALI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5247 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_137741294.pdb -s /var/tmp/to_scwrl_137741294.seq -o /var/tmp/from_scwrl_137741294.pdb > /var/tmp/scwrl_137741294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_137741294.pdb Number of alignments=764 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-simplesw-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-simplesw-adpstyle1.a2m # found chain 1yz7A in template set T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 227 :DITAPDYYKAEEVLESIAEEILRVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5248 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1412731527.pdb -s /var/tmp/to_scwrl_1412731527.seq -o /var/tmp/from_scwrl_1412731527.pdb > /var/tmp/scwrl_1412731527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412731527.pdb Number of alignments=765 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-simplesw-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-simplesw-adpstyle5.a2m # found chain 1yz7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5248 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-global-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t04-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKP 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIRAR T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1yz7A 204 :DRANKEKDVEVKFTYLGAPRYRIDITAPD T0287 164 :FYANLKTIEQYNDYVRDLLMK 1yz7A 233 :YYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5252 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_549962266.pdb -s /var/tmp/to_scwrl_549962266.seq -o /var/tmp/from_scwrl_549962266.pdb > /var/tmp/scwrl_549962266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_549962266.pdb Number of alignments=766 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-global-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-global-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 5 :M 1yz7A 92 :A T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 93 :KLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTID T0287 106 :PNFLFSKFDRSILGIFLPFFSK 1yz7A 180 :AEFEITVPKPNGVEIIKEALIR T0287 130 :MFKMSIREMDSQIELYGTNLPLLKLFVMTD 1yz7A 202 :ARDRANKEKDVEVKFTYLGAPRYRIDITAP T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1yz7A 232 :DYYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=5258 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1188210499.pdb -s /var/tmp/to_scwrl_1188210499.seq -o /var/tmp/from_scwrl_1188210499.pdb > /var/tmp/scwrl_1188210499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1188210499.pdb Number of alignments=767 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKL 1yz7A 92 :AKLQ T0287 12 :IADSKDKKEKLIESLQE 1yz7A 96 :EFKRAQKAENLLKLAAE T0287 31 :LLNTDEKK 1yz7A 113 :KLGKDFET T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 121 :AWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEV 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYY T0287 166 :ANLKTIEQYNDY 1yz7A 235 :KAEEVLESIAEE T0287 187 :LEKYMKEKGVQ 1yz7A 247 :ILRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5267 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_870160554.pdb -s /var/tmp/to_scwrl_870160554.seq -o /var/tmp/from_scwrl_870160554.pdb > /var/tmp/scwrl_870160554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_870160554.pdb Number of alignments=768 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKLF 1yz7A 92 :AKLQE T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1yz7A 97 :FKRAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5276 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_28850664.pdb -s /var/tmp/to_scwrl_28850664.seq -o /var/tmp/from_scwrl_28850664.pdb > /var/tmp/scwrl_28850664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28850664.pdb Number of alignments=769 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-local-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t04-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 227 :DITAPDYYKAEEVLESIAEEILRVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5277 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1442390313.pdb -s /var/tmp/to_scwrl_1442390313.seq -o /var/tmp/from_scwrl_1442390313.pdb > /var/tmp/scwrl_1442390313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1442390313.pdb Number of alignments=770 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-local-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-local-adpstyle5.a2m # found chain 1yz7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5277 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set T0287 13 :ADSKDKKEKLIESLQ 1yz7A 97 :FKRAQKAENLLKLAA T0287 30 :ELLNTDEK 1yz7A 112 :EKLGKDFE T0287 45 :KTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 120 :TAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEVN 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYYK T0287 167 :NLKTIEQYND 1yz7A 236 :AEEVLESIAE T0287 180 :D 1yz7A 246 :E T0287 187 :LEKYMKEKGV 1yz7A 247 :ILRVIKEAGG Number of specific fragments extracted= 9 number of extra gaps= 0 total=5286 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1896450778.pdb -s /var/tmp/to_scwrl_1896450778.seq -o /var/tmp/from_scwrl_1896450778.pdb > /var/tmp/scwrl_1896450778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1896450778.pdb Number of alignments=771 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKK 1yz7A 99 :RAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=5294 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1994431903.pdb -s /var/tmp/to_scwrl_1994431903.seq -o /var/tmp/from_scwrl_1994431903.pdb > /var/tmp/scwrl_1994431903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994431903.pdb Number of alignments=772 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-global-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t06-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKP 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIRAR T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1yz7A 204 :DRANKEKDVEVKFTYLGAPRYRIDITAPD T0287 164 :FYANLKTIEQYNDYVRDLLMK 1yz7A 233 :YYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5298 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_952514805.pdb -s /var/tmp/to_scwrl_952514805.seq -o /var/tmp/from_scwrl_952514805.pdb > /var/tmp/scwrl_952514805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_952514805.pdb Number of alignments=773 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-global-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-global-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 5 :M 1yz7A 92 :A T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 93 :KLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTID T0287 106 :PNFLFSKFDRSILGIFLPFFSK 1yz7A 180 :AEFEITVPKPNGVEIIKEALIR T0287 130 :MFKMSIREMDSQIELYGTNLPLLKLFVMTD 1yz7A 202 :ARDRANKEKDVEVKFTYLGAPRYRIDITAP T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1yz7A 232 :DYYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=5304 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2061543566.pdb -s /var/tmp/to_scwrl_2061543566.seq -o /var/tmp/from_scwrl_2061543566.pdb > /var/tmp/scwrl_2061543566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061543566.pdb Number of alignments=774 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKL 1yz7A 92 :AKLQ T0287 12 :IADSKDKKEKLIESLQE 1yz7A 96 :EFKRAQKAENLLKLAAE T0287 31 :LLNTDEKK 1yz7A 113 :KLGKDFET T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 121 :AWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEV 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYY T0287 166 :ANLKTIEQYNDY 1yz7A 235 :KAEEVLESIAEE T0287 187 :LEKYMKEKGVQ 1yz7A 247 :ILRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5313 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1664866517.pdb -s /var/tmp/to_scwrl_1664866517.seq -o /var/tmp/from_scwrl_1664866517.pdb > /var/tmp/scwrl_1664866517.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664866517.pdb Number of alignments=775 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKLF 1yz7A 92 :AKLQE T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1yz7A 97 :FKRAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5322 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1822384369.pdb -s /var/tmp/to_scwrl_1822384369.seq -o /var/tmp/from_scwrl_1822384369.pdb > /var/tmp/scwrl_1822384369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1822384369.pdb Number of alignments=776 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-local-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t06-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 227 :DITAPDYYKAEEVLESIAEEILRVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5323 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_997253260.pdb -s /var/tmp/to_scwrl_997253260.seq -o /var/tmp/from_scwrl_997253260.pdb > /var/tmp/scwrl_997253260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_997253260.pdb Number of alignments=777 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-local-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-local-adpstyle5.a2m # found chain 1yz7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5323 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set T0287 13 :ADSKDKKEKLIESLQ 1yz7A 97 :FKRAQKAENLLKLAA T0287 30 :ELLNTDEK 1yz7A 112 :EKLGKDFE T0287 45 :KTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 120 :TAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEVN 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYYK T0287 167 :NLKTIEQYND 1yz7A 236 :AEEVLESIAE T0287 180 :D 1yz7A 246 :E T0287 187 :LEKYMKEKGV 1yz7A 247 :ILRVIKEAGG Number of specific fragments extracted= 9 number of extra gaps= 0 total=5332 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1006495465.pdb -s /var/tmp/to_scwrl_1006495465.seq -o /var/tmp/from_scwrl_1006495465.pdb > /var/tmp/scwrl_1006495465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006495465.pdb Number of alignments=778 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKK 1yz7A 99 :RAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=5340 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_59188127.pdb -s /var/tmp/to_scwrl_59188127.seq -o /var/tmp/from_scwrl_59188127.pdb > /var/tmp/scwrl_59188127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_59188127.pdb Number of alignments=779 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-global-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t2k-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKP 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIRAR T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1yz7A 204 :DRANKEKDVEVKFTYLGAPRYRIDITAPD T0287 164 :FYANLKTIEQYNDYVRDLLMK 1yz7A 233 :YYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5344 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2032203832.pdb -s /var/tmp/to_scwrl_2032203832.seq -o /var/tmp/from_scwrl_2032203832.pdb > /var/tmp/scwrl_2032203832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2032203832.pdb Number of alignments=780 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-global-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-global-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 5 :M 1yz7A 92 :A T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 93 :KLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTID T0287 106 :PNFLFSKFDRSILGIFLPFFSK 1yz7A 180 :AEFEITVPKPNGVEIIKEALIR T0287 130 :MFKMSIREMDSQIELYGTNLPLLKLFVMTD 1yz7A 202 :ARDRANKEKDVEVKFTYLGAPRYRIDITAP T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1yz7A 232 :DYYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=5350 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_489217383.pdb -s /var/tmp/to_scwrl_489217383.seq -o /var/tmp/from_scwrl_489217383.pdb > /var/tmp/scwrl_489217383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_489217383.pdb Number of alignments=781 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKLF 1yz7A 92 :AKLQE T0287 13 :ADSKDKKEKLIESLQE 1yz7A 97 :FKRAQKAENLLKLAAE T0287 31 :LLNTDEKK 1yz7A 113 :KLGKDFET T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 121 :AWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEVNF 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYYKA T0287 168 :LKTIEQYNDY 1yz7A 237 :EEVLESIAEE T0287 187 :LEKYMKEKGVQ 1yz7A 247 :ILRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5359 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1522805152.pdb -s /var/tmp/to_scwrl_1522805152.seq -o /var/tmp/from_scwrl_1522805152.pdb > /var/tmp/scwrl_1522805152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1522805152.pdb Number of alignments=782 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKLF 1yz7A 92 :AKLQE T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1yz7A 97 :FKRAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5368 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1337559336.pdb -s /var/tmp/to_scwrl_1337559336.seq -o /var/tmp/from_scwrl_1337559336.pdb > /var/tmp/scwrl_1337559336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1337559336.pdb Number of alignments=783 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-local-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t2k-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 227 :DITAPDYYKAEEVLESIAEEILRVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5369 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1121380300.pdb -s /var/tmp/to_scwrl_1121380300.seq -o /var/tmp/from_scwrl_1121380300.pdb > /var/tmp/scwrl_1121380300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1121380300.pdb Number of alignments=784 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-local-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-local-adpstyle5.a2m # found chain 1yz7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5369 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set T0287 9 :FSMIADSKDKKEKLIESLQE 1yz7A 93 :KLQEFKRAQKAENLLKLAAE T0287 31 :LLNTDEK 1yz7A 113 :KLGKDFE T0287 45 :KTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 120 :TAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEVNFY 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYYKAE T0287 169 :KTIEQYND 1yz7A 238 :EVLESIAE T0287 180 :D 1yz7A 246 :E T0287 187 :LEKYMKEKGV 1yz7A 247 :ILRVIKEAGG Number of specific fragments extracted= 9 number of extra gaps= 0 total=5378 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1959485143.pdb -s /var/tmp/to_scwrl_1959485143.seq -o /var/tmp/from_scwrl_1959485143.pdb > /var/tmp/scwrl_1959485143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1959485143.pdb Number of alignments=785 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKK 1yz7A 99 :RAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=5386 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_417611760.pdb -s /var/tmp/to_scwrl_417611760.seq -o /var/tmp/from_scwrl_417611760.pdb > /var/tmp/scwrl_417611760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_417611760.pdb Number of alignments=786 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-muscle.a2m.gz # 1yz7A read from T0287-1yz7A-t04-muscle.a2m.gz # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETME 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVE T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGT 1yz7A 173 :VPTVTIDAEFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGA T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 222 :PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5389 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1853260161.pdb -s /var/tmp/to_scwrl_1853260161.seq -o /var/tmp/from_scwrl_1853260161.pdb > /var/tmp/scwrl_1853260161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1853260161.pdb Number of alignments=787 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-muscle.a2m.gz # 1yz7A read from T0287-1yz7A-t2k-muscle.a2m.gz # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETME 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVE T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGT 1yz7A 173 :VPTVTIDAEFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGA T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 222 :PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5392 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_529509299.pdb -s /var/tmp/to_scwrl_529509299.seq -o /var/tmp/from_scwrl_529509299.pdb > /var/tmp/scwrl_529509299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529509299.pdb Number of alignments=788 # command:# Prefix for input files set to 2ahjA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)N4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 5 :MR 2ahjA 14 :AQ T0287 13 :ADSKDKKEKLIESLQENELLNTD 2ahjA 16 :APVSDRAWALFRALDGKGLVPDG T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNY 2ahjA 39 :YVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASD T0287 153 :KLFV 2ahjA 156 :EIRV T0287 157 :MTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 161 :DTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 10 number of extra gaps= 3 total=5402 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_949948566.pdb -s /var/tmp/to_scwrl_949948566.seq -o /var/tmp/from_scwrl_949948566.pdb > /var/tmp/scwrl_949948566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_949948566.pdb Number of alignments=789 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFS 2ahjA 119 :ILGLPPTWYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=5404 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t04-global-adpstyle1.a2m # 2ahjA read from 2ahjA-T0287-t04-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWT T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 68 :EFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVM 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 162 :TTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 7 number of extra gaps= 3 total=5411 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1770610600.pdb -s /var/tmp/to_scwrl_1770610600.seq -o /var/tmp/from_scwrl_1770610600.pdb > /var/tmp/scwrl_1770610600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770610600.pdb Number of alignments=790 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t04-global-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-t04-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAE T0287 56 :TNKGALD 2ahjA 60 :VARAWTD T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 68 :EFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVM 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 162 :TTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 6 number of extra gaps= 2 total=5417 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1887278505.pdb -s /var/tmp/to_scwrl_1887278505.seq -o /var/tmp/from_scwrl_1887278505.pdb > /var/tmp/scwrl_1887278505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887278505.pdb Number of alignments=791 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t04-local-adpstyle1.a2m # 2ahjA read from 2ahjA-T0287-t04-local-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=5419 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t04-local-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-t04-local-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 69 :FRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=5422 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_202205324.pdb -s /var/tmp/to_scwrl_202205324.seq -o /var/tmp/from_scwrl_202205324.pdb > /var/tmp/scwrl_202205324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202205324.pdb Number of alignments=792 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t2k-global-adpstyle1.a2m # 2ahjA read from 2ahjA-T0287-t2k-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 165 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 6 number of extra gaps= 2 total=5428 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1818786797.pdb -s /var/tmp/to_scwrl_1818786797.seq -o /var/tmp/from_scwrl_1818786797.pdb > /var/tmp/scwrl_1818786797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1818786797.pdb Number of alignments=793 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t2k-global-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-t2k-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQM 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGA T0287 55 :HTNKGALDKVLR 2ahjA 59 :LVARAWTDPEFR T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 72 :LLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASD T0287 153 :KLFVMTDEEVNFYANL 2ahjA 156 :EIRVYDTTAETRYMVL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 173 :QRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 2 total=5436 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_864778132.pdb -s /var/tmp/to_scwrl_864778132.seq -o /var/tmp/from_scwrl_864778132.pdb > /var/tmp/scwrl_864778132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_864778132.pdb Number of alignments=794 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t2k-local-adpstyle1.a2m # 2ahjA read from 2ahjA-T0287-t2k-local-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 4 number of extra gaps= 2 total=5440 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_339946618.pdb -s /var/tmp/to_scwrl_339946618.seq -o /var/tmp/from_scwrl_339946618.pdb > /var/tmp/scwrl_339946618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_339946618.pdb Number of alignments=795 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t2k-local-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-t2k-local-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 66 :RNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 71 :QLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS Number of specific fragments extracted= 4 number of extra gaps= 2 total=5444 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1084034677.pdb -s /var/tmp/to_scwrl_1084034677.seq -o /var/tmp/from_scwrl_1084034677.pdb > /var/tmp/scwrl_1084034677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1084034677.pdb Number of alignments=796 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-simplesw-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-simplesw-adpstyle1.a2m # found chain 2ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjA 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5445 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-simplesw-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-simplesw-adpstyle5.a2m # found chain 2ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5445 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-global-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t04-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNT 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjA 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=5453 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1414740398.pdb -s /var/tmp/to_scwrl_1414740398.seq -o /var/tmp/from_scwrl_1414740398.pdb > /var/tmp/scwrl_1414740398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414740398.pdb Number of alignments=797 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-global-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjA 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjA 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjA 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=5463 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1528157117.pdb -s /var/tmp/to_scwrl_1528157117.seq -o /var/tmp/from_scwrl_1528157117.pdb > /var/tmp/scwrl_1528157117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1528157117.pdb Number of alignments=798 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjA 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2ahjA 67 :PEFRQ T0287 90 :LLESET 2ahjA 72 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjA 78 :TAAVAQYGYLGPQGEY T0287 117 :I 2ahjA 94 :I T0287 129 :IMFK 2ahjA 95 :VAVE T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 13 number of extra gaps= 3 total=5476 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1954195232.pdb -s /var/tmp/to_scwrl_1954195232.seq -o /var/tmp/from_scwrl_1954195232.pdb > /var/tmp/scwrl_1954195232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954195232.pdb Number of alignments=799 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)K83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 84 :F 2ahjA 116 :A T0287 87 :VYRLLES 2ahjA 119 :ILGLPPT T0287 94 :ETMELLHAIAENPNFLFSKF 2ahjA 128 :KSFEYRARVVREPRKVLSEM T0287 195 :GVQNA 2ahjA 148 :GTEIA Number of specific fragments extracted= 8 number of extra gaps= 2 total=5484 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1443591062.pdb -s /var/tmp/to_scwrl_1443591062.seq -o /var/tmp/from_scwrl_1443591062.pdb > /var/tmp/scwrl_1443591062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1443591062.pdb Number of alignments=800 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-local-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t04-local-adpstyle1.a2m # found chain 2ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjA 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5485 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-local-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-local-adpstyle5.a2m # found chain 2ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5485 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjA 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2ahjA 67 :PEFRQ T0287 90 :LLESET 2ahjA 72 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjA 78 :TAAVAQYGYLGPQGEY T0287 117 :I 2ahjA 94 :I T0287 129 :IMFK 2ahjA 95 :VAVE T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 2 total=5497 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_823063785.pdb -s /var/tmp/to_scwrl_823063785.seq -o /var/tmp/from_scwrl_823063785.pdb > /var/tmp/scwrl_823063785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823063785.pdb Number of alignments=801 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 109 :LFSKF 2ahjA 87 :LGPQG T0287 140 :SQIELYGTNLPLLKLF 2ahjA 92 :EYIVAVEDTPTLKNVI T0287 158 :T 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NLKTI 2ahjA 119 :ILGLP T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 125 :TWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 2 total=5506 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1703162363.pdb -s /var/tmp/to_scwrl_1703162363.seq -o /var/tmp/from_scwrl_1703162363.pdb > /var/tmp/scwrl_1703162363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1703162363.pdb Number of alignments=802 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-global-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t06-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNT 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjA 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=5514 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1290539318.pdb -s /var/tmp/to_scwrl_1290539318.seq -o /var/tmp/from_scwrl_1290539318.pdb > /var/tmp/scwrl_1290539318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1290539318.pdb Number of alignments=803 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-global-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjA 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjA 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjA 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=5524 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1775578589.pdb -s /var/tmp/to_scwrl_1775578589.seq -o /var/tmp/from_scwrl_1775578589.pdb > /var/tmp/scwrl_1775578589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775578589.pdb Number of alignments=804 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjA 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2ahjA 67 :PEFRQ T0287 90 :LLESET 2ahjA 72 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjA 78 :TAAVAQYGYLGPQGEY T0287 117 :I 2ahjA 94 :I T0287 129 :IMFK 2ahjA 95 :VAVE T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 13 number of extra gaps= 3 total=5537 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1617222282.pdb -s /var/tmp/to_scwrl_1617222282.seq -o /var/tmp/from_scwrl_1617222282.pdb > /var/tmp/scwrl_1617222282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617222282.pdb Number of alignments=805 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)K83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 84 :F 2ahjA 116 :A T0287 87 :VYRLLES 2ahjA 119 :ILGLPPT T0287 94 :ETMELLHAIAENPNFLFSKF 2ahjA 128 :KSFEYRARVVREPRKVLSEM T0287 195 :GVQNA 2ahjA 148 :GTEIA Number of specific fragments extracted= 8 number of extra gaps= 2 total=5545 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_807922189.pdb -s /var/tmp/to_scwrl_807922189.seq -o /var/tmp/from_scwrl_807922189.pdb > /var/tmp/scwrl_807922189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_807922189.pdb Number of alignments=806 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-local-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t06-local-adpstyle1.a2m # found chain 2ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjA 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5546 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-local-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-local-adpstyle5.a2m # found chain 2ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5546 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjA 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2ahjA 67 :PEFRQ T0287 90 :LLESET 2ahjA 72 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjA 78 :TAAVAQYGYLGPQGEY T0287 117 :I 2ahjA 94 :I T0287 129 :IMFK 2ahjA 95 :VAVE T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 2 total=5558 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1450479311.pdb -s /var/tmp/to_scwrl_1450479311.seq -o /var/tmp/from_scwrl_1450479311.pdb > /var/tmp/scwrl_1450479311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1450479311.pdb Number of alignments=807 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 109 :LFSKF 2ahjA 87 :LGPQG T0287 140 :SQIELYGTNLPLLKLF 2ahjA 92 :EYIVAVEDTPTLKNVI T0287 158 :T 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NLKTI 2ahjA 119 :ILGLP T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 125 :TWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 2 total=5567 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_466991895.pdb -s /var/tmp/to_scwrl_466991895.seq -o /var/tmp/from_scwrl_466991895.pdb > /var/tmp/scwrl_466991895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466991895.pdb Number of alignments=808 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-global-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t2k-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNT 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjA 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=5575 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1814417654.pdb -s /var/tmp/to_scwrl_1814417654.seq -o /var/tmp/from_scwrl_1814417654.pdb > /var/tmp/scwrl_1814417654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1814417654.pdb Number of alignments=809 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-global-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjA 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjA 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjA 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=5585 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1509667439.pdb -s /var/tmp/to_scwrl_1509667439.seq -o /var/tmp/from_scwrl_1509667439.pdb > /var/tmp/scwrl_1509667439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1509667439.pdb Number of alignments=810 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2ahjA 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2ahjA 73 :LLTDGTAAVAQYGY T0287 109 :LFSKFD 2ahjA 87 :LGPQGE T0287 128 :PIMFK 2ahjA 93 :YIVAV T0287 146 :G 2ahjA 98 :E T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=5597 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_351712081.pdb -s /var/tmp/to_scwrl_351712081.seq -o /var/tmp/from_scwrl_351712081.pdb > /var/tmp/scwrl_351712081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_351712081.pdb Number of alignments=811 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)K83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 84 :F 2ahjA 116 :A T0287 87 :VYRLLES 2ahjA 119 :ILGLPPT T0287 94 :ETMELLHAIAENPNFLFSKF 2ahjA 128 :KSFEYRARVVREPRKVLSEM T0287 195 :GVQNA 2ahjA 148 :GTEIA Number of specific fragments extracted= 8 number of extra gaps= 2 total=5605 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_156151390.pdb -s /var/tmp/to_scwrl_156151390.seq -o /var/tmp/from_scwrl_156151390.pdb > /var/tmp/scwrl_156151390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_156151390.pdb Number of alignments=812 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-local-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t2k-local-adpstyle1.a2m # found chain 2ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjA 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5606 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-local-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-local-adpstyle5.a2m # found chain 2ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5606 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 15 :QAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2ahjA 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIG 2ahjA 73 :LLTDGTAAVAQYG T0287 108 :FLFSKFD 2ahjA 86 :YLGPQGE T0287 128 :PIMFK 2ahjA 93 :YIVAV T0287 146 :G 2ahjA 98 :E T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=5617 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_884988945.pdb -s /var/tmp/to_scwrl_884988945.seq -o /var/tmp/from_scwrl_884988945.pdb > /var/tmp/scwrl_884988945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_884988945.pdb Number of alignments=813 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 109 :LFSKF 2ahjA 87 :LGPQG T0287 140 :SQIELYGTNLPLLKLF 2ahjA 92 :EYIVAVEDTPTLKNVI T0287 158 :T 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NLKTI 2ahjA 119 :ILGLP T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 125 :TWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 2 total=5626 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1689271417.pdb -s /var/tmp/to_scwrl_1689271417.seq -o /var/tmp/from_scwrl_1689271417.pdb > /var/tmp/scwrl_1689271417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1689271417.pdb Number of alignments=814 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-muscle.a2m.gz # 2ahjA read from T0287-2ahjA-t04-muscle.a2m.gz # found chain 2ahjA in template set Warning: unaligning (T0287)K7 because first residue in template chain is (2ahjA)I4 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVM 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 162 :TTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 6 number of extra gaps= 2 total=5632 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1277531690.pdb -s /var/tmp/to_scwrl_1277531690.seq -o /var/tmp/from_scwrl_1277531690.pdb > /var/tmp/scwrl_1277531690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1277531690.pdb Number of alignments=815 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-muscle.a2m.gz # 2ahjA read from T0287-2ahjA-t2k-muscle.a2m.gz # found chain 2ahjA in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQE 2ahjA 18 :VSDRAWALFRALDGKGLVPDGYVEGWKK T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQM 2ahjA 48 :EEDFSPRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 165 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 7 number of extra gaps= 2 total=5639 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_696990441.pdb -s /var/tmp/to_scwrl_696990441.seq -o /var/tmp/from_scwrl_696990441.pdb > /var/tmp/scwrl_696990441.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696990441.pdb Number of alignments=816 # command:# Prefix for input files set to 2ahjC/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # 2ahjC read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 1 :M 2ahjC 4 :I T0287 4 :NMR 2ahjC 13 :PAQ T0287 13 :ADSKDKKEKLIESLQENELLNTD 2ahjC 16 :APVSDRAWALFRALDGKGLVPDG T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNY 2ahjC 39 :YVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLL 2ahjC 136 :VVREPRKVLSEMGTEIASD T0287 153 :KLFV 2ahjC 156 :EIRV T0287 157 :MTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjC 161 :DTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 10 number of extra gaps= 3 total=5649 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2106883177.pdb -s /var/tmp/to_scwrl_2106883177.seq -o /var/tmp/from_scwrl_2106883177.pdb > /var/tmp/scwrl_2106883177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2106883177.pdb Number of alignments=817 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # 2ahjC read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 T0287 114 :DRSILGIFLPFFS 2ahjC 116 :AWPILGLPPTWYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5650 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjC-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjC-T0287-t2k-global-adpstyle1.a2m # 2ahjC read from 2ahjC-T0287-t2k-global-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKIID 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGWKK T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYM 2ahjC 47 :FEEDFSPRRGAELVARAWTDPEFRQLL T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 75 :TDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDE 2ahjC 136 :VVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjC 165 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 7 number of extra gaps= 2 total=5657 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_983308206.pdb -s /var/tmp/to_scwrl_983308206.seq -o /var/tmp/from_scwrl_983308206.pdb > /var/tmp/scwrl_983308206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_983308206.pdb Number of alignments=818 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjC-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjC-T0287-t2k-global-adpstyle5.a2m # 2ahjC read from 2ahjC-T0287-t2k-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQ 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRG T0287 54 :MHTNKGALDKVLR 2ahjC 58 :ELVARAWTDPEFR T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 72 :LLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDEEVNFYANLKTI 2ahjC 155 :IEIRVYDTTAETRYMVLPQR T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjC 176 :AGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 2 total=5665 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1226499739.pdb -s /var/tmp/to_scwrl_1226499739.seq -o /var/tmp/from_scwrl_1226499739.pdb > /var/tmp/scwrl_1226499739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1226499739.pdb Number of alignments=819 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjC-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjC-T0287-t2k-local-adpstyle1.a2m # 2ahjC read from 2ahjC-T0287-t2k-local-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLP 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 4 number of extra gaps= 2 total=5669 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_909348096.pdb -s /var/tmp/to_scwrl_909348096.seq -o /var/tmp/from_scwrl_909348096.pdb > /var/tmp/scwrl_909348096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_909348096.pdb Number of alignments=820 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjC-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjC-T0287-t2k-local-adpstyle5.a2m # 2ahjC read from 2ahjC-T0287-t2k-local-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 70 :RQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS Number of specific fragments extracted= 4 number of extra gaps= 2 total=5673 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_606435159.pdb -s /var/tmp/to_scwrl_606435159.seq -o /var/tmp/from_scwrl_606435159.pdb > /var/tmp/scwrl_606435159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_606435159.pdb Number of alignments=821 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-simplesw-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-simplesw-adpstyle1.a2m # found chain 2ahjC in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjC 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5674 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-simplesw-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-simplesw-adpstyle5.a2m # found chain 2ahjC in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5674 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-global-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t04-global-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNT 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjC 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjC 136 :VVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=5682 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_966294599.pdb -s /var/tmp/to_scwrl_966294599.seq -o /var/tmp/from_scwrl_966294599.pdb > /var/tmp/scwrl_966294599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_966294599.pdb Number of alignments=822 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-global-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEK 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjC 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjC 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjC 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=5692 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1111553419.pdb -s /var/tmp/to_scwrl_1111553419.seq -o /var/tmp/from_scwrl_1111553419.pdb > /var/tmp/scwrl_1111553419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111553419.pdb Number of alignments=823 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKI 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGW T0287 48 :HDFFKQMHTNKGALDKVLRNYM 2ahjC 44 :KKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 2ahjC 67 :PEFRQL T0287 91 :LESET 2ahjC 73 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjC 78 :TAAVAQYGYLGPQGEY T0287 128 :PIMFK 2ahjC 94 :IVAVE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 164 :FYANL 2ahjC 119 :ILGLP T0287 171 :IEQYNDYVRD 2ahjC 124 :PTWYKSFEYR T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=5704 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_277738309.pdb -s /var/tmp/to_scwrl_277738309.seq -o /var/tmp/from_scwrl_277738309.pdb > /var/tmp/scwrl_277738309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277738309.pdb Number of alignments=824 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjC 74 :LTDGTAAVAQYGY T0287 84 :FKKVYRLLES 2ahjC 116 :AWPILGLPPT T0287 94 :ETMELL 2ahjC 128 :KSFEYR T0287 102 :IAENPNFLFSKFDRSI 2ahjC 136 :VVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVM 2ahjC 152 :ASDIEIRVYDTTAETRYMVLP T0287 158 :TDEEVNFY 2ahjC 174 :RPAGTEGW T0287 170 :TIEQYNDYV 2ahjC 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2ahjC 192 :KDCLIGVAI T0287 195 :G 2ahjC 202 :Q Number of specific fragments extracted= 11 number of extra gaps= 2 total=5715 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1831072730.pdb -s /var/tmp/to_scwrl_1831072730.seq -o /var/tmp/from_scwrl_1831072730.pdb > /var/tmp/scwrl_1831072730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1831072730.pdb Number of alignments=825 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-local-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t04-local-adpstyle1.a2m # found chain 2ahjC in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjC 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5716 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-local-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-local-adpstyle5.a2m # found chain 2ahjC in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5716 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjC 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 2ahjC 67 :PEFRQL T0287 91 :LESET 2ahjC 73 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjC 78 :TAAVAQYGYLGPQGEY T0287 128 :PIMFK 2ahjC 94 :IVAVE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 164 :FYANL 2ahjC 119 :ILGLP T0287 171 :IEQYNDYVRD 2ahjC 124 :PTWYKSFEYR T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=5727 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1451500038.pdb -s /var/tmp/to_scwrl_1451500038.seq -o /var/tmp/from_scwrl_1451500038.pdb > /var/tmp/scwrl_1451500038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451500038.pdb Number of alignments=826 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGVDK 2ahjC 74 :LTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2ahjC 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2ahjC 110 :S T0287 164 :FYANLKTI 2ahjC 116 :AWPILGLP T0287 172 :EQYN 2ahjC 125 :TWYK T0287 176 :DY 2ahjC 131 :EY T0287 179 :R 2ahjC 133 :R T0287 182 :LMK 2ahjC 136 :VVR T0287 186 :DLEKYMKEKGVQNA 2ahjC 139 :EPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=5738 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1361772986.pdb -s /var/tmp/to_scwrl_1361772986.seq -o /var/tmp/from_scwrl_1361772986.pdb > /var/tmp/scwrl_1361772986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1361772986.pdb Number of alignments=827 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-global-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t06-global-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNT 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjC 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjC 136 :VVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=5746 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1098329481.pdb -s /var/tmp/to_scwrl_1098329481.seq -o /var/tmp/from_scwrl_1098329481.pdb > /var/tmp/scwrl_1098329481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1098329481.pdb Number of alignments=828 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-global-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEK 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjC 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjC 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjC 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=5756 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_832173509.pdb -s /var/tmp/to_scwrl_832173509.seq -o /var/tmp/from_scwrl_832173509.pdb > /var/tmp/scwrl_832173509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_832173509.pdb Number of alignments=829 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKI 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGW T0287 48 :HDFFKQMHTNKGALDKVLRNYM 2ahjC 44 :KKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 2ahjC 67 :PEFRQL T0287 91 :LESET 2ahjC 73 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjC 78 :TAAVAQYGYLGPQGEY T0287 128 :PIMFK 2ahjC 94 :IVAVE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 164 :FYANL 2ahjC 119 :ILGLP T0287 171 :IEQYNDYVRD 2ahjC 124 :PTWYKSFEYR T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=5768 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1168484571.pdb -s /var/tmp/to_scwrl_1168484571.seq -o /var/tmp/from_scwrl_1168484571.pdb > /var/tmp/scwrl_1168484571.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1168484571.pdb Number of alignments=830 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjC 74 :LTDGTAAVAQYGY T0287 84 :FKKVYRLLES 2ahjC 116 :AWPILGLPPT T0287 94 :ETMELL 2ahjC 128 :KSFEYR T0287 102 :IAENPNFLFSKFDRSI 2ahjC 136 :VVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVM 2ahjC 152 :ASDIEIRVYDTTAETRYMVLP T0287 158 :TDEEVNFY 2ahjC 174 :RPAGTEGW T0287 170 :TIEQYNDYV 2ahjC 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2ahjC 192 :KDCLIGVAI T0287 195 :G 2ahjC 202 :Q Number of specific fragments extracted= 11 number of extra gaps= 2 total=5779 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_394436897.pdb -s /var/tmp/to_scwrl_394436897.seq -o /var/tmp/from_scwrl_394436897.pdb > /var/tmp/scwrl_394436897.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_394436897.pdb Number of alignments=831 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-local-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t06-local-adpstyle1.a2m # found chain 2ahjC in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjC 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5780 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-local-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-local-adpstyle5.a2m # found chain 2ahjC in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5780 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjC 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 2ahjC 67 :PEFRQL T0287 91 :LESET 2ahjC 73 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjC 78 :TAAVAQYGYLGPQGEY T0287 128 :PIMFK 2ahjC 94 :IVAVE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 164 :FYANL 2ahjC 119 :ILGLP T0287 171 :IEQYNDYVRD 2ahjC 124 :PTWYKSFEYR T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=5791 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1655237293.pdb -s /var/tmp/to_scwrl_1655237293.seq -o /var/tmp/from_scwrl_1655237293.pdb > /var/tmp/scwrl_1655237293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1655237293.pdb Number of alignments=832 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGVDK 2ahjC 74 :LTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2ahjC 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2ahjC 110 :S T0287 164 :FYANLKTI 2ahjC 116 :AWPILGLP T0287 172 :EQYN 2ahjC 125 :TWYK T0287 176 :DY 2ahjC 131 :EY T0287 179 :R 2ahjC 133 :R T0287 182 :LMK 2ahjC 136 :VVR T0287 186 :DLEKYMKEKGVQNA 2ahjC 139 :EPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=5802 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_724163288.pdb -s /var/tmp/to_scwrl_724163288.seq -o /var/tmp/from_scwrl_724163288.pdb > /var/tmp/scwrl_724163288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724163288.pdb Number of alignments=833 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-global-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t2k-global-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNT 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjC 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjC 136 :VVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=5810 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1684976216.pdb -s /var/tmp/to_scwrl_1684976216.seq -o /var/tmp/from_scwrl_1684976216.pdb > /var/tmp/scwrl_1684976216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1684976216.pdb Number of alignments=834 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-global-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEK 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjC 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjC 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjC 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=5820 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1283332235.pdb -s /var/tmp/to_scwrl_1283332235.seq -o /var/tmp/from_scwrl_1283332235.pdb > /var/tmp/scwrl_1283332235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1283332235.pdb Number of alignments=835 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNT 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPD T0287 35 :DEKKKIIDQ 2ahjC 41 :EGWKKTFEE T0287 44 :IKTMHDFFKQMHTNKGALDK 2ahjC 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2ahjC 73 :LLTDGTAAVAQYGY T0287 88 :YRLL 2ahjC 117 :WPIL T0287 92 :ESETMELL 2ahjC 126 :WYKSFEYR T0287 102 :IAENPNFLFSKFDRSI 2ahjC 136 :VVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVMTDEEVNF 2ahjC 152 :ASDIEIRVYDTTAETRYMVLPQRPAGTE T0287 168 :LKTIEQYNDYV 2ahjC 180 :GWSQEQLQEIV T0287 179 :RDLLMKFDLE 2ahjC 192 :KDCLIGVAIP T0287 195 :G 2ahjC 202 :Q Number of specific fragments extracted= 12 number of extra gaps= 2 total=5832 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_193901923.pdb -s /var/tmp/to_scwrl_193901923.seq -o /var/tmp/from_scwrl_193901923.pdb > /var/tmp/scwrl_193901923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_193901923.pdb Number of alignments=836 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjC 74 :LTDGTAAVAQYGY T0287 84 :FKKVYRLLES 2ahjC 116 :AWPILGLPPT T0287 94 :ETMELL 2ahjC 128 :KSFEYR T0287 102 :IAENPNFLFSKFDRSI 2ahjC 136 :VVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVM 2ahjC 152 :ASDIEIRVYDTTAETRYMVLP T0287 158 :TDEEVNFY 2ahjC 174 :RPAGTEGW T0287 170 :TIEQYNDYV 2ahjC 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2ahjC 192 :KDCLIGVAI T0287 195 :G 2ahjC 202 :Q Number of specific fragments extracted= 11 number of extra gaps= 2 total=5843 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_345414758.pdb -s /var/tmp/to_scwrl_345414758.seq -o /var/tmp/from_scwrl_345414758.pdb > /var/tmp/scwrl_345414758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345414758.pdb Number of alignments=837 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-local-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t2k-local-adpstyle1.a2m # found chain 2ahjC in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjC 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5844 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-local-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-local-adpstyle5.a2m # found chain 2ahjC in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5844 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 15 :QAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIG 2ahjC 74 :LTDGTAAVAQYG T0287 108 :FLFSKFD 2ahjC 86 :YLGPQGE T0287 128 :PIMF 2ahjC 93 :YIVA T0287 145 :YG 2ahjC 97 :VE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 163 :NFYANLKTIEQYNDY 2ahjC 118 :PILGLPPTWYKSFEY T0287 180 :D 2ahjC 133 :R T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=5855 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_586327901.pdb -s /var/tmp/to_scwrl_586327901.seq -o /var/tmp/from_scwrl_586327901.pdb > /var/tmp/scwrl_586327901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_586327901.pdb Number of alignments=838 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGVDK 2ahjC 74 :LTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2ahjC 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2ahjC 110 :S T0287 164 :FYANLKTI 2ahjC 116 :AWPILGLP T0287 172 :EQYN 2ahjC 125 :TWYK T0287 176 :DY 2ahjC 131 :EY T0287 179 :R 2ahjC 133 :R T0287 182 :LMK 2ahjC 136 :VVR T0287 186 :DLEKYMKEKGVQNA 2ahjC 139 :EPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=5866 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_660893819.pdb -s /var/tmp/to_scwrl_660893819.seq -o /var/tmp/from_scwrl_660893819.pdb > /var/tmp/scwrl_660893819.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_660893819.pdb Number of alignments=839 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-muscle.a2m.gz # 2ahjC read from T0287-2ahjC-t2k-muscle.a2m.gz # found chain 2ahjC in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2ahjC)I4 Warning: unaligning (T0287)K7 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)F9 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIK 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 2ahjC 50 :DFSPRRGAELVARAWTDPEFRQLL T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 75 :TDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVM 2ahjC 155 :IEIRVY T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjC 162 :TTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 2 total=5874 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_12348765.pdb -s /var/tmp/to_scwrl_12348765.seq -o /var/tmp/from_scwrl_12348765.pdb > /var/tmp/scwrl_12348765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12348765.pdb Number of alignments=840 # command:# Prefix for input files set to 2b7eA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t04-global-adpstyle1.a2m # 2b7eA read from 2b7eA-T0287-t04-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)Y72 because last residue in template chain is (2b7eA)R59 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=5876 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2095995340.pdb -s /var/tmp/to_scwrl_2095995340.seq -o /var/tmp/from_scwrl_2095995340.pdb > /var/tmp/scwrl_2095995340.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2095995340.pdb Number of alignments=841 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t04-global-adpstyle5.a2m # 2b7eA read from 2b7eA-T0287-t04-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)Y72 because last residue in template chain is (2b7eA)R59 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=5878 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1012605900.pdb -s /var/tmp/to_scwrl_1012605900.seq -o /var/tmp/from_scwrl_1012605900.pdb > /var/tmp/scwrl_1012605900.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1012605900.pdb Number of alignments=842 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t04-local-adpstyle1.a2m # 2b7eA read from 2b7eA-T0287-t04-local-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5879 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_168500155.pdb -s /var/tmp/to_scwrl_168500155.seq -o /var/tmp/from_scwrl_168500155.pdb > /var/tmp/scwrl_168500155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_168500155.pdb Number of alignments=843 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t04-local-adpstyle5.a2m # 2b7eA read from 2b7eA-T0287-t04-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 9 :FITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5880 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_833500638.pdb -s /var/tmp/to_scwrl_833500638.seq -o /var/tmp/from_scwrl_833500638.pdb > /var/tmp/scwrl_833500638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833500638.pdb Number of alignments=844 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t2k-global-adpstyle1.a2m # 2b7eA read from 2b7eA-T0287-t2k-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)Y72 because last residue in template chain is (2b7eA)R59 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 3 number of extra gaps= 1 total=5883 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_554393670.pdb -s /var/tmp/to_scwrl_554393670.seq -o /var/tmp/from_scwrl_554393670.pdb > /var/tmp/scwrl_554393670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554393670.pdb Number of alignments=845 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t2k-global-adpstyle5.a2m # 2b7eA read from 2b7eA-T0287-t2k-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMK 2b7eA 45 :PLWKKEMFEKYLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=5886 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1446031846.pdb -s /var/tmp/to_scwrl_1446031846.seq -o /var/tmp/from_scwrl_1446031846.pdb > /var/tmp/scwrl_1446031846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1446031846.pdb Number of alignments=846 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t2k-local-adpstyle1.a2m # 2b7eA read from 2b7eA-T0287-t2k-local-adpstyle1.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5887 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1530491078.pdb -s /var/tmp/to_scwrl_1530491078.seq -o /var/tmp/from_scwrl_1530491078.pdb > /var/tmp/scwrl_1530491078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1530491078.pdb Number of alignments=847 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t2k-local-adpstyle5.a2m # 2b7eA read from 2b7eA-T0287-t2k-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 8 :EFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5888 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_513793200.pdb -s /var/tmp/to_scwrl_513793200.seq -o /var/tmp/from_scwrl_513793200.pdb > /var/tmp/scwrl_513793200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_513793200.pdb Number of alignments=848 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-simplesw-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-simplesw-adpstyle1.a2m # found chain 2b7eA in template set T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKT 2b7eA 4 :EAEKEFITMLKENQVDSTWSFSRIISELGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5889 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_281856405.pdb -s /var/tmp/to_scwrl_281856405.seq -o /var/tmp/from_scwrl_281856405.pdb > /var/tmp/scwrl_281856405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_281856405.pdb Number of alignments=849 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-simplesw-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-simplesw-adpstyle5.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHD 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=5890 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_609507171.pdb -s /var/tmp/to_scwrl_609507171.seq -o /var/tmp/from_scwrl_609507171.pdb > /var/tmp/scwrl_609507171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609507171.pdb Number of alignments=850 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-global-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t04-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHD 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDP T0287 66 :RNYMKD 2b7eA 37 :RYWMVD T0287 74 :AVIK 2b7eA 45 :PLWK T0287 189 :KYMKEKGVQNA 2b7eA 49 :KEMFEKYLSNR Number of specific fragments extracted= 5 number of extra gaps= 1 total=5895 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1423141295.pdb -s /var/tmp/to_scwrl_1423141295.seq -o /var/tmp/from_scwrl_1423141295.pdb > /var/tmp/scwrl_1423141295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423141295.pdb Number of alignments=851 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-global-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNM 2b7eA 1 :GAMEA T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPR T0287 67 :NYM 2b7eA 38 :YWM T0287 158 :TD 2b7eA 41 :VD T0287 162 :V 2b7eA 45 :P T0287 182 :L 2b7eA 46 :L T0287 187 :LEKYMKEKGVQNA 2b7eA 47 :WKKEMFEKYLSNR Number of specific fragments extracted= 7 number of extra gaps= 1 total=5902 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_888291564.pdb -s /var/tmp/to_scwrl_888291564.seq -o /var/tmp/from_scwrl_888291564.pdb > /var/tmp/scwrl_888291564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_888291564.pdb Number of alignments=852 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 180 :DLL 2b7eA 45 :PLW T0287 188 :EKYMKEKGVQNA 2b7eA 48 :KKEMFEKYLSNR Number of specific fragments extracted= 4 number of extra gaps= 1 total=5906 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1575801769.pdb -s /var/tmp/to_scwrl_1575801769.seq -o /var/tmp/from_scwrl_1575801769.pdb > /var/tmp/scwrl_1575801769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1575801769.pdb Number of alignments=853 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMK 2b7eA 45 :PLWKKEMFEKYLS T0287 198 :NA 2b7eA 58 :NR Number of specific fragments extracted= 4 number of extra gaps= 1 total=5910 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_387211068.pdb -s /var/tmp/to_scwrl_387211068.seq -o /var/tmp/from_scwrl_387211068.pdb > /var/tmp/scwrl_387211068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_387211068.pdb Number of alignments=854 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-local-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t04-local-adpstyle1.a2m # found chain 2b7eA in template set T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKT 2b7eA 4 :EAEKEFITMLKENQVDSTWSFSRIISELGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5911 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1166029872.pdb -s /var/tmp/to_scwrl_1166029872.seq -o /var/tmp/from_scwrl_1166029872.pdb > /var/tmp/scwrl_1166029872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1166029872.pdb Number of alignments=855 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-local-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5912 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1259390853.pdb -s /var/tmp/to_scwrl_1259390853.seq -o /var/tmp/from_scwrl_1259390853.pdb > /var/tmp/scwrl_1259390853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259390853.pdb Number of alignments=856 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=5914 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1838711106.pdb -s /var/tmp/to_scwrl_1838711106.seq -o /var/tmp/from_scwrl_1838711106.pdb > /var/tmp/scwrl_1838711106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838711106.pdb Number of alignments=857 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=5916 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_380319212.pdb -s /var/tmp/to_scwrl_380319212.seq -o /var/tmp/from_scwrl_380319212.pdb > /var/tmp/scwrl_380319212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_380319212.pdb Number of alignments=858 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-global-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t06-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHD 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDP T0287 66 :RNYMKD 2b7eA 37 :RYWMVD T0287 74 :AVIK 2b7eA 45 :PLWK T0287 189 :KYMKEKGVQNA 2b7eA 49 :KEMFEKYLSNR Number of specific fragments extracted= 5 number of extra gaps= 1 total=5921 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_210236688.pdb -s /var/tmp/to_scwrl_210236688.seq -o /var/tmp/from_scwrl_210236688.pdb > /var/tmp/scwrl_210236688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210236688.pdb Number of alignments=859 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-global-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNM 2b7eA 1 :GAMEA T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPR T0287 67 :NYM 2b7eA 38 :YWM T0287 158 :TD 2b7eA 41 :VD T0287 162 :V 2b7eA 45 :P T0287 182 :L 2b7eA 46 :L T0287 187 :LEKYMKEKGVQNA 2b7eA 47 :WKKEMFEKYLSNR Number of specific fragments extracted= 7 number of extra gaps= 1 total=5928 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_523400969.pdb -s /var/tmp/to_scwrl_523400969.seq -o /var/tmp/from_scwrl_523400969.pdb > /var/tmp/scwrl_523400969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_523400969.pdb Number of alignments=860 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 180 :DLL 2b7eA 45 :PLW T0287 188 :EKYMKEKGVQNA 2b7eA 48 :KKEMFEKYLSNR Number of specific fragments extracted= 4 number of extra gaps= 1 total=5932 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1548803784.pdb -s /var/tmp/to_scwrl_1548803784.seq -o /var/tmp/from_scwrl_1548803784.pdb > /var/tmp/scwrl_1548803784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1548803784.pdb Number of alignments=861 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMK 2b7eA 45 :PLWKKEMFEKYLS T0287 198 :NA 2b7eA 58 :NR Number of specific fragments extracted= 4 number of extra gaps= 1 total=5936 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_604673586.pdb -s /var/tmp/to_scwrl_604673586.seq -o /var/tmp/from_scwrl_604673586.pdb > /var/tmp/scwrl_604673586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_604673586.pdb Number of alignments=862 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-local-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t06-local-adpstyle1.a2m # found chain 2b7eA in template set T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKT 2b7eA 4 :EAEKEFITMLKENQVDSTWSFSRIISELGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5937 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_31154615.pdb -s /var/tmp/to_scwrl_31154615.seq -o /var/tmp/from_scwrl_31154615.pdb > /var/tmp/scwrl_31154615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31154615.pdb Number of alignments=863 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-local-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5938 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_125483425.pdb -s /var/tmp/to_scwrl_125483425.seq -o /var/tmp/from_scwrl_125483425.pdb > /var/tmp/scwrl_125483425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_125483425.pdb Number of alignments=864 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=5940 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_142166155.pdb -s /var/tmp/to_scwrl_142166155.seq -o /var/tmp/from_scwrl_142166155.pdb > /var/tmp/scwrl_142166155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_142166155.pdb Number of alignments=865 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=5942 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1314486851.pdb -s /var/tmp/to_scwrl_1314486851.seq -o /var/tmp/from_scwrl_1314486851.pdb > /var/tmp/scwrl_1314486851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1314486851.pdb Number of alignments=866 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-global-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t2k-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHD 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDP T0287 66 :RNYMKD 2b7eA 37 :RYWMVD T0287 74 :AVIK 2b7eA 45 :PLWK T0287 189 :KYMKEKGVQNA 2b7eA 49 :KEMFEKYLSNR Number of specific fragments extracted= 5 number of extra gaps= 1 total=5947 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_319385349.pdb -s /var/tmp/to_scwrl_319385349.seq -o /var/tmp/from_scwrl_319385349.pdb > /var/tmp/scwrl_319385349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_319385349.pdb Number of alignments=867 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-global-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNM 2b7eA 1 :GAMEA T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPR T0287 67 :NYM 2b7eA 38 :YWM T0287 158 :TD 2b7eA 41 :VD T0287 162 :V 2b7eA 45 :P T0287 182 :L 2b7eA 46 :L T0287 187 :LEKYMKEKGVQNA 2b7eA 47 :WKKEMFEKYLSNR Number of specific fragments extracted= 7 number of extra gaps= 1 total=5954 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_487580913.pdb -s /var/tmp/to_scwrl_487580913.seq -o /var/tmp/from_scwrl_487580913.pdb > /var/tmp/scwrl_487580913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487580913.pdb Number of alignments=868 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MS 2b7eA 1 :GA T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 3 :MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 180 :DL 2b7eA 45 :PL T0287 187 :LEKYMKEKGVQNA 2b7eA 47 :WKKEMFEKYLSNR Number of specific fragments extracted= 4 number of extra gaps= 1 total=5958 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1900814752.pdb -s /var/tmp/to_scwrl_1900814752.seq -o /var/tmp/from_scwrl_1900814752.pdb > /var/tmp/scwrl_1900814752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1900814752.pdb Number of alignments=869 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMK 2b7eA 45 :PLWKKEMFEKYLS T0287 198 :NA 2b7eA 58 :NR Number of specific fragments extracted= 4 number of extra gaps= 1 total=5962 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_980279168.pdb -s /var/tmp/to_scwrl_980279168.seq -o /var/tmp/from_scwrl_980279168.pdb > /var/tmp/scwrl_980279168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_980279168.pdb Number of alignments=870 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-local-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t2k-local-adpstyle1.a2m # found chain 2b7eA in template set T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKT 2b7eA 4 :EAEKEFITMLKENQVDSTWSFSRIISELGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5963 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_499929679.pdb -s /var/tmp/to_scwrl_499929679.seq -o /var/tmp/from_scwrl_499929679.pdb > /var/tmp/scwrl_499929679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_499929679.pdb Number of alignments=871 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-local-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5964 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1849326445.pdb -s /var/tmp/to_scwrl_1849326445.seq -o /var/tmp/from_scwrl_1849326445.pdb > /var/tmp/scwrl_1849326445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1849326445.pdb Number of alignments=872 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=5966 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1992885067.pdb -s /var/tmp/to_scwrl_1992885067.seq -o /var/tmp/from_scwrl_1992885067.pdb > /var/tmp/scwrl_1992885067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1992885067.pdb Number of alignments=873 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=5968 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_668429834.pdb -s /var/tmp/to_scwrl_668429834.seq -o /var/tmp/from_scwrl_668429834.pdb > /var/tmp/scwrl_668429834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668429834.pdb Number of alignments=874 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-muscle.a2m.gz # 2b7eA read from T0287-2b7eA-t04-muscle.a2m.gz # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)K194 because last residue in template chain is (2b7eA)R59 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 123 :PFFSKPI 2b7eA 45 :PLWKKEM T0287 187 :LEKYMKE 2b7eA 52 :FEKYLSN Number of specific fragments extracted= 4 number of extra gaps= 1 total=5972 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_535343436.pdb -s /var/tmp/to_scwrl_535343436.seq -o /var/tmp/from_scwrl_535343436.pdb > /var/tmp/scwrl_535343436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535343436.pdb Number of alignments=875 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-muscle.a2m.gz # 2b7eA read from T0287-2b7eA-t2k-muscle.a2m.gz # found chain 2b7eA in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)K194 because last residue in template chain is (2b7eA)R59 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENEL 2b7eA 10 :ITMLKENQV T0287 67 :NYMKDYRAVIKSIGVD 2b7eA 19 :DSTWSFSRIISELGTR T0287 105 :NPNFLFSK 2b7eA 35 :DPRYWMVD T0287 123 :PFFSKPI 2b7eA 45 :PLWKKEM T0287 187 :LEKYMKE 2b7eA 52 :FEKYLSN Number of specific fragments extracted= 6 number of extra gaps= 1 total=5978 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_399795090.pdb -s /var/tmp/to_scwrl_399795090.seq -o /var/tmp/from_scwrl_399795090.pdb > /var/tmp/scwrl_399795090.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_399795090.pdb Number of alignments=876 # command:# Prefix for input files set to 2cunA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t04-global-adpstyle1.a2m # 2cunA read from 2cunA-T0287-t04-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :MSNNMRKLFSMIADSKDKK 2cunA 76 :LSELLDQHVEYIEDIFGRY T0287 20 :EKLIESLQENELL 2cunA 96 :REKIKELKSGEVA T0287 33 :NTDEKKKIIDQIKTMHDFF 2cunA 126 :EECEKTFLVKKLSKVIDYV T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGV 2cunA 172 :FLMEKEIEALMRAYYSKDSPKIYVLGGAKV T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 2cunA 203 :DSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDY T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVNFY 2cunA 255 :VKHAEEILDEFYPYIRTPVDFAVDYKGERVE T0287 166 :ANLKTIEQYNDYVRDLLMKF 2cunA 304 :IGKRTAEKYREILMKARIIV T0287 186 :DLEKYMKEKGVQN 2cunA 360 :HSIASIQKYGITG Number of specific fragments extracted= 8 number of extra gaps= 0 total=5986 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2114461680.pdb -s /var/tmp/to_scwrl_2114461680.seq -o /var/tmp/from_scwrl_2114461680.pdb > /var/tmp/scwrl_2114461680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2114461680.pdb Number of alignments=877 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t04-global-adpstyle5.a2m # 2cunA read from 2cunA-T0287-t04-global-adpstyle5.a2m # found chain 2cunA in template set T0287 5 :MRKL 2cunA 4 :LEDF T0287 9 :FSMIADSKDKK 2cunA 39 :LPTIRYLIESG T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 2cunA 96 :REKIKELKSGEVAILENLRFSAEEVKNK T0287 52 :KQMHTNKGALDKVLRNYMKD 2cunA 124 :PIEECEKTFLVKKLSKVIDY T0287 72 :YRAVIKSIGVDKFKKVY 2cunA 153 :HRSQPSLVGFARIKPMI T0287 89 :RLLESE 2cunA 172 :FLMEKE T0287 96 :MELLHAIAENPN 2cunA 178 :IEALMRAYYSKD T0287 108 :FLF 2cunA 210 :NVL T0287 111 :SKFDRSIL 2cunA 215 :ERADLVLT T0287 119 :GIFLPFFSKPIMFKMS 2cunA 224 :GLVANVFTLAKGFDLG T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVN 2cunA 255 :VKHAEEILDEFYPYIRTPVDFAVDYKGER T0287 164 :FYANLKTIEQYNDYVRDLLM 2cunA 302 :MDIGKRTAEKYREILMKARI T0287 184 :KFDLEKY 2cunA 330 :VFEREEF T0287 191 :MKEKGV 2cunA 365 :IQKYGI T0287 197 :QNA 2cunA 403 :EKF Number of specific fragments extracted= 15 number of extra gaps= 0 total=6001 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2065834514.pdb -s /var/tmp/to_scwrl_2065834514.seq -o /var/tmp/from_scwrl_2065834514.pdb > /var/tmp/scwrl_2065834514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2065834514.pdb Number of alignments=878 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t04-local-adpstyle1.a2m # 2cunA read from 2cunA-T0287-t04-local-adpstyle1.a2m # found chain 2cunA in template set Warning: unaligning (T0287)L168 because first residue in template chain is (2cunA)M1 T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQN 2cunA 2 :FRLEDFNFHNKTVFLRVDLNSPMKDGKIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=6002 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_913588290.pdb -s /var/tmp/to_scwrl_913588290.seq -o /var/tmp/from_scwrl_913588290.pdb > /var/tmp/scwrl_913588290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_913588290.pdb Number of alignments=879 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t04-local-adpstyle5.a2m # 2cunA read from 2cunA-T0287-t04-local-adpstyle5.a2m # found chain 2cunA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6002 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t2k-global-adpstyle1.a2m # 2cunA read from 2cunA-T0287-t2k-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :MSNNMRKLFSMIADSKDKK 2cunA 76 :LSELLDQHVEYIEDIFGRY T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 2cunA 96 :REKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVND T0287 72 :YRAVIKSIGVDKFKKVY 2cunA 153 :HRSQPSLVGFARIKPMI T0287 89 :RLLESETMELLHAIAENP 2cunA 172 :FLMEKEIEALMRAYYSKD T0287 107 :NFLFS 2cunA 209 :ENVLR T0287 112 :KFDRSIL 2cunA 216 :RADLVLT T0287 119 :GIFLPFFSKPIMFKMSIREMD 2cunA 224 :GLVANVFTLAKGFDLGRKNVE T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANL 2cunA 260 :EILDEFYPYIRTPVDFAVDYKGERVEIDL T0287 169 :KTIEQYNDYVRDLLMKF 2cunA 307 :RTAEKYREILMKARIIV T0287 186 :DLEKYMKEKGVQNA 2cunA 360 :HSIASIQKYGITGI Number of specific fragments extracted= 10 number of extra gaps= 0 total=6012 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_248834438.pdb -s /var/tmp/to_scwrl_248834438.seq -o /var/tmp/from_scwrl_248834438.pdb > /var/tmp/scwrl_248834438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_248834438.pdb Number of alignments=880 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t2k-global-adpstyle5.a2m # 2cunA read from 2cunA-T0287-t2k-global-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKK 2cunA 32 :DARFKAVLPTIRYLIESG T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 2cunA 96 :REKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVND T0287 72 :YRAVIKSIGVDKFKK 2cunA 153 :HRSQPSLVGFARIKP T0287 88 :Y 2cunA 169 :I T0287 89 :RLLESE 2cunA 172 :FLMEKE T0287 96 :MELLHAIAENPN 2cunA 178 :IEALMRAYYSKD T0287 108 :FLFS 2cunA 210 :NVLR T0287 112 :KFDRSIL 2cunA 216 :RADLVLT T0287 119 :GIFLPFFSKPIMFKMSIREMD 2cunA 224 :GLVANVFTLAKGFDLGRKNVE T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNF 2cunA 260 :EILDEFYPYIRTPVDFAVDYKGERV T0287 165 :YANLKTIEQYNDYVRDLLM 2cunA 303 :DIGKRTAEKYREILMKARI T0287 184 :KFDLEKY 2cunA 330 :VFEREEF T0287 191 :MKE 2cunA 347 :IAD T0287 194 :KGVQNA 2cunA 400 :ISYEKF Number of specific fragments extracted= 15 number of extra gaps= 0 total=6027 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_527858038.pdb -s /var/tmp/to_scwrl_527858038.seq -o /var/tmp/from_scwrl_527858038.pdb > /var/tmp/scwrl_527858038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_527858038.pdb Number of alignments=881 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t2k-local-adpstyle1.a2m # 2cunA read from 2cunA-T0287-t2k-local-adpstyle1.a2m # found chain 2cunA in template set T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQN 2cunA 3 :RLEDFNFHNKTVFLRVDLNSPMKDGKIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=6028 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_189245938.pdb -s /var/tmp/to_scwrl_189245938.seq -o /var/tmp/from_scwrl_189245938.pdb > /var/tmp/scwrl_189245938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_189245938.pdb Number of alignments=882 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t2k-local-adpstyle5.a2m # 2cunA read from 2cunA-T0287-t2k-local-adpstyle5.a2m # found chain 2cunA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6028 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-simplesw-adpstyle1.a2m # 2cunA read from T0287-2cunA-simplesw-adpstyle1.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTD 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=6029 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1137126001.pdb -s /var/tmp/to_scwrl_1137126001.seq -o /var/tmp/from_scwrl_1137126001.pdb > /var/tmp/scwrl_1137126001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1137126001.pdb Number of alignments=883 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-simplesw-adpstyle5.a2m # 2cunA read from T0287-2cunA-simplesw-adpstyle5.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMK 2cunA 313 :REILMK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6032 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2103659808.pdb -s /var/tmp/to_scwrl_2103659808.seq -o /var/tmp/from_scwrl_2103659808.pdb > /var/tmp/scwrl_2103659808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2103659808.pdb Number of alignments=884 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-global-adpstyle1.a2m # 2cunA read from T0287-2cunA-t04-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 9 :FHNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKII 2cunA 47 :ESGAKVV T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNL 2cunA 57 :HQGKPYSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFAR T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cunA 180 :ALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANV Number of specific fragments extracted= 5 number of extra gaps= 0 total=6037 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_576457006.pdb -s /var/tmp/to_scwrl_576457006.seq -o /var/tmp/from_scwrl_576457006.pdb > /var/tmp/scwrl_576457006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_576457006.pdb Number of alignments=885 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-global-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-global-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 10 :HNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKIIDQIKTMH 2cunA 70 :EEHARVLSELLDQH T0287 49 :DFF 2cunA 89 :DIF T0287 52 :KQMHTNKGALDKVLRNYM 2cunA 100 :KELKSGEVAILENLRFSA T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2cunA 123 :KPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQ T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 2cunA 157 :PSLVGFARIKPMIMGFLMEKEIEALMRAYYSKDS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEK 2cunA 191 :PKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGR T0287 190 :YMKEKGVQN 2cunA 245 :FMKKKGLLD Number of specific fragments extracted= 9 number of extra gaps= 0 total=6046 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_155672227.pdb -s /var/tmp/to_scwrl_155672227.seq -o /var/tmp/from_scwrl_155672227.pdb > /var/tmp/scwrl_155672227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155672227.pdb Number of alignments=886 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 6 :RKLFSMIA 2cunA 40 :PTIRYLIE T0287 14 :DSKD 2cunA 62 :YSED T0287 21 :KLIESLQENEL 2cunA 74 :RVLSELLDQHV T0287 38 :KKIIDQIKTM 2cunA 93 :RYAREKIKEL T0287 53 :QMHTNKGALDKVLRN 2cunA 125 :IEECEKTFLVKKLSK T0287 68 :YMKDYRAVIKSIGVDK 2cunA 174 :MEKEIEALMRAYYSKD T0287 84 :FKKVYRLLESE 2cunA 205 :LKVVENVLRRE T0287 96 :MELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 240 :RKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 167 :NLKTI 2cunA 305 :GKRTA T0287 176 :DYVRDLLMKFDL 2cunA 310 :EKYREILMKARI Number of specific fragments extracted= 11 number of extra gaps= 0 total=6057 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1215567014.pdb -s /var/tmp/to_scwrl_1215567014.seq -o /var/tmp/from_scwrl_1215567014.pdb > /var/tmp/scwrl_1215567014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1215567014.pdb Number of alignments=887 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 5 :MRKLFSMIADSK 2cunA 38 :VLPTIRYLIESG T0287 20 :EKLIESLQE 2cunA 70 :EEHARVLSE T0287 31 :LLNTD 2cunA 79 :LLDQH T0287 36 :EKKKIIDQIKTM 2cunA 91 :FGRYAREKIKEL T0287 49 :DFFKQMHTN 2cunA 132 :FLVKKLSKV T0287 60 :ALDKVLRNYMKDY 2cunA 173 :LMEKEIEALMRAY T0287 73 :RAVIKSI 2cunA 209 :ENVLRRE T0287 80 :GVDKFKKVYRLLES 2cunA 235 :GFDLGRKNVEFMKK T0287 106 :PNFL 2cunA 249 :KGLL T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSI 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKFD 2cunA 306 :KRTAEKYREILMKAR Number of specific fragments extracted= 14 number of extra gaps= 0 total=6071 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_267684466.pdb -s /var/tmp/to_scwrl_267684466.seq -o /var/tmp/from_scwrl_267684466.pdb > /var/tmp/scwrl_267684466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_267684466.pdb Number of alignments=888 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-local-adpstyle1.a2m # 2cunA read from T0287-2cunA-t04-local-adpstyle1.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTD 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=6072 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_535991440.pdb -s /var/tmp/to_scwrl_535991440.seq -o /var/tmp/from_scwrl_535991440.pdb > /var/tmp/scwrl_535991440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535991440.pdb Number of alignments=889 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-local-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-local-adpstyle5.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMK 2cunA 313 :REILMK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6075 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1425803702.pdb -s /var/tmp/to_scwrl_1425803702.seq -o /var/tmp/from_scwrl_1425803702.pdb > /var/tmp/scwrl_1425803702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1425803702.pdb Number of alignments=890 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 85 :KKV 2cunA 240 :RKN T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 243 :VEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 167 :NLKTIE 2cunA 305 :GKRTAE T0287 177 :YVRDLLMKF 2cunA 311 :KYREILMKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=6079 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_791085435.pdb -s /var/tmp/to_scwrl_791085435.seq -o /var/tmp/from_scwrl_791085435.pdb > /var/tmp/scwrl_791085435.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_791085435.pdb Number of alignments=891 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 20 :EKLIESLQENELLNT 2cunA 175 :EKEIEALMRAYYSKD T0287 37 :KKKI 2cunA 190 :SPKI T0287 44 :IKTMHDFFKQMHTNK 2cunA 201 :VEDSLKVVENVLRRE T0287 59 :GALDK 2cunA 224 :GLVAN T0287 64 :VLRNY 2cunA 232 :LAKGF T0287 69 :MKDYRAVIKSIG 2cunA 239 :GRKNVEFMKKKG T0287 81 :VDKFKKVYRLLES 2cunA 252 :LDYVKHAEEILDE T0287 121 :FLPFFSKPIMFKMSI 2cunA 265 :FYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKF 2cunA 306 :KRTAEKYREILMKA Number of specific fragments extracted= 11 number of extra gaps= 0 total=6090 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2084795224.pdb -s /var/tmp/to_scwrl_2084795224.seq -o /var/tmp/from_scwrl_2084795224.pdb > /var/tmp/scwrl_2084795224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2084795224.pdb Number of alignments=892 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-global-adpstyle1.a2m # 2cunA read from T0287-2cunA-t06-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 9 :FHNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKII 2cunA 47 :ESGAKVV T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNL 2cunA 57 :HQGKPYSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFAR T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cunA 180 :ALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANV Number of specific fragments extracted= 5 number of extra gaps= 0 total=6095 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2030477288.pdb -s /var/tmp/to_scwrl_2030477288.seq -o /var/tmp/from_scwrl_2030477288.pdb > /var/tmp/scwrl_2030477288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2030477288.pdb Number of alignments=893 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-global-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-global-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 10 :HNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKIIDQIKTMH 2cunA 70 :EEHARVLSELLDQH T0287 49 :DFF 2cunA 89 :DIF T0287 52 :KQMHTNKGALDKVLRNYM 2cunA 100 :KELKSGEVAILENLRFSA T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2cunA 123 :KPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQ T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 2cunA 157 :PSLVGFARIKPMIMGFLMEKEIEALMRAYYSKDS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEK 2cunA 191 :PKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGR T0287 190 :YMKEKGVQN 2cunA 245 :FMKKKGLLD Number of specific fragments extracted= 9 number of extra gaps= 0 total=6104 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_822240050.pdb -s /var/tmp/to_scwrl_822240050.seq -o /var/tmp/from_scwrl_822240050.pdb > /var/tmp/scwrl_822240050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_822240050.pdb Number of alignments=894 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 6 :RKLFSMIA 2cunA 40 :PTIRYLIE T0287 14 :DSKD 2cunA 62 :YSED T0287 21 :KLIESLQENEL 2cunA 74 :RVLSELLDQHV T0287 38 :KKIIDQIKTM 2cunA 93 :RYAREKIKEL T0287 53 :QMHTNKGALDKVLRN 2cunA 125 :IEECEKTFLVKKLSK T0287 68 :YMKDYRAVIKSIGVDK 2cunA 174 :MEKEIEALMRAYYSKD T0287 84 :FKKVYRLLESE 2cunA 205 :LKVVENVLRRE T0287 96 :MELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 240 :RKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 167 :NLKTI 2cunA 305 :GKRTA T0287 176 :DYVRDLLMKFDL 2cunA 310 :EKYREILMKARI Number of specific fragments extracted= 11 number of extra gaps= 0 total=6115 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_62795002.pdb -s /var/tmp/to_scwrl_62795002.seq -o /var/tmp/from_scwrl_62795002.pdb > /var/tmp/scwrl_62795002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62795002.pdb Number of alignments=895 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 5 :MRKLFSMIADSK 2cunA 38 :VLPTIRYLIESG T0287 20 :EKLIESLQE 2cunA 70 :EEHARVLSE T0287 31 :LLNTD 2cunA 79 :LLDQH T0287 36 :EKKKIIDQIKTM 2cunA 91 :FGRYAREKIKEL T0287 49 :DFFKQMHTN 2cunA 132 :FLVKKLSKV T0287 60 :ALDKVLRNYMKDY 2cunA 173 :LMEKEIEALMRAY T0287 73 :RAVIKSI 2cunA 209 :ENVLRRE T0287 80 :GVDKFKKVYRLLES 2cunA 235 :GFDLGRKNVEFMKK T0287 106 :PNFL 2cunA 249 :KGLL T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSI 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKFD 2cunA 306 :KRTAEKYREILMKAR Number of specific fragments extracted= 14 number of extra gaps= 0 total=6129 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_25159796.pdb -s /var/tmp/to_scwrl_25159796.seq -o /var/tmp/from_scwrl_25159796.pdb > /var/tmp/scwrl_25159796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25159796.pdb Number of alignments=896 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-local-adpstyle1.a2m # 2cunA read from T0287-2cunA-t06-local-adpstyle1.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTD 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=6130 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2136726901.pdb -s /var/tmp/to_scwrl_2136726901.seq -o /var/tmp/from_scwrl_2136726901.pdb > /var/tmp/scwrl_2136726901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2136726901.pdb Number of alignments=897 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-local-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-local-adpstyle5.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMK 2cunA 313 :REILMK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6133 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_382180351.pdb -s /var/tmp/to_scwrl_382180351.seq -o /var/tmp/from_scwrl_382180351.pdb > /var/tmp/scwrl_382180351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_382180351.pdb Number of alignments=898 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 85 :KKV 2cunA 240 :RKN T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 243 :VEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 167 :NLKTIE 2cunA 305 :GKRTAE T0287 177 :YVRDLLMKF 2cunA 311 :KYREILMKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=6137 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_512740710.pdb -s /var/tmp/to_scwrl_512740710.seq -o /var/tmp/from_scwrl_512740710.pdb > /var/tmp/scwrl_512740710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512740710.pdb Number of alignments=899 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 20 :EKLIESLQENELLNT 2cunA 175 :EKEIEALMRAYYSKD T0287 37 :KKKI 2cunA 190 :SPKI T0287 44 :IKTMHDFFKQMHTNK 2cunA 201 :VEDSLKVVENVLRRE T0287 59 :GALDK 2cunA 224 :GLVAN T0287 64 :VLRNY 2cunA 232 :LAKGF T0287 69 :MKDYRAVIKSIG 2cunA 239 :GRKNVEFMKKKG T0287 81 :VDKFKKVYRLLES 2cunA 252 :LDYVKHAEEILDE T0287 121 :FLPFFSKPIMFKMSI 2cunA 265 :FYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKF 2cunA 306 :KRTAEKYREILMKA Number of specific fragments extracted= 11 number of extra gaps= 0 total=6148 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1890058006.pdb -s /var/tmp/to_scwrl_1890058006.seq -o /var/tmp/from_scwrl_1890058006.pdb > /var/tmp/scwrl_1890058006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1890058006.pdb Number of alignments=900 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-global-adpstyle1.a2m # 2cunA read from T0287-2cunA-t2k-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 9 :FHNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKII 2cunA 47 :ESGAKVV T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNL 2cunA 57 :HQGKPYSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFAR T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cunA 180 :ALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANV Number of specific fragments extracted= 5 number of extra gaps= 0 total=6153 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1362459518.pdb -s /var/tmp/to_scwrl_1362459518.seq -o /var/tmp/from_scwrl_1362459518.pdb > /var/tmp/scwrl_1362459518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1362459518.pdb Number of alignments=901 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-global-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-global-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 10 :HNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKIIDQIKTMH 2cunA 70 :EEHARVLSELLDQH T0287 49 :DFF 2cunA 89 :DIF T0287 52 :KQMHTNKGALDKVLRNYM 2cunA 100 :KELKSGEVAILENLRFSA T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2cunA 123 :KPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQ T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 2cunA 157 :PSLVGFARIKPMIMGFLMEKEIEALMRAYYSKDS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEK 2cunA 191 :PKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGR T0287 190 :YMKEKGVQN 2cunA 245 :FMKKKGLLD Number of specific fragments extracted= 9 number of extra gaps= 0 total=6162 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1012670389.pdb -s /var/tmp/to_scwrl_1012670389.seq -o /var/tmp/from_scwrl_1012670389.pdb > /var/tmp/scwrl_1012670389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1012670389.pdb Number of alignments=902 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 20 :EKLIES 2cunA 43 :RYLIES T0287 27 :QENELLNTDEKKKIIDQI 2cunA 62 :YSEDYTTTEEHARVLSEL T0287 45 :KTMHDFFKQMHT 2cunA 93 :RYAREKIKELKS T0287 57 :NKGALDKVLRN 2cunA 129 :EKTFLVKKLSK T0287 70 :KDYRAVIKSIGVDK 2cunA 176 :KEIEALMRAYYSKD T0287 84 :FKKVYRLLESE 2cunA 205 :LKVVENVLRRE T0287 96 :MELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 240 :RKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 154 :LFV 2cunA 301 :IMD T0287 167 :NLKTIEQ 2cunA 305 :GKRTAEK T0287 178 :VRDLLMKFDL 2cunA 312 :YREILMKARI Number of specific fragments extracted= 11 number of extra gaps= 0 total=6173 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1591900804.pdb -s /var/tmp/to_scwrl_1591900804.seq -o /var/tmp/from_scwrl_1591900804.pdb > /var/tmp/scwrl_1591900804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1591900804.pdb Number of alignments=903 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 5 :MRKLFSMIADSK 2cunA 38 :VLPTIRYLIESG T0287 20 :EKLIESLQE 2cunA 70 :EEHARVLSE T0287 31 :LLNTD 2cunA 79 :LLDQH T0287 36 :EKKKIIDQIKTM 2cunA 91 :FGRYAREKIKEL T0287 49 :DFFKQMHTN 2cunA 132 :FLVKKLSKV T0287 60 :ALDKVLRNYMKDY 2cunA 173 :LMEKEIEALMRAY T0287 73 :RAVIKSI 2cunA 209 :ENVLRRE T0287 80 :GVDKFKKVYRLLES 2cunA 235 :GFDLGRKNVEFMKK T0287 106 :PNFL 2cunA 249 :KGLL T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSI 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKFD 2cunA 306 :KRTAEKYREILMKAR Number of specific fragments extracted= 14 number of extra gaps= 0 total=6187 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1207860938.pdb -s /var/tmp/to_scwrl_1207860938.seq -o /var/tmp/from_scwrl_1207860938.pdb > /var/tmp/scwrl_1207860938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1207860938.pdb Number of alignments=904 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-local-adpstyle1.a2m # 2cunA read from T0287-2cunA-t2k-local-adpstyle1.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTD 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=6188 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1681100222.pdb -s /var/tmp/to_scwrl_1681100222.seq -o /var/tmp/from_scwrl_1681100222.pdb > /var/tmp/scwrl_1681100222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681100222.pdb Number of alignments=905 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-local-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-local-adpstyle5.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMK 2cunA 313 :REILMK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6191 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2127244240.pdb -s /var/tmp/to_scwrl_2127244240.seq -o /var/tmp/from_scwrl_2127244240.pdb > /var/tmp/scwrl_2127244240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2127244240.pdb Number of alignments=906 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 84 :FKKVY 2cunA 239 :GRKNV T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 244 :EFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 154 :LFV 2cunA 301 :IMD T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMKF 2cunA 313 :REILMKA Number of specific fragments extracted= 5 number of extra gaps= 0 total=6196 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1607656028.pdb -s /var/tmp/to_scwrl_1607656028.seq -o /var/tmp/from_scwrl_1607656028.pdb > /var/tmp/scwrl_1607656028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1607656028.pdb Number of alignments=907 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 20 :EKLIESLQENELLNT 2cunA 175 :EKEIEALMRAYYSKD T0287 37 :KKKI 2cunA 190 :SPKI T0287 44 :IKTMHDFFKQMHTNK 2cunA 201 :VEDSLKVVENVLRRE T0287 59 :GALDK 2cunA 224 :GLVAN T0287 64 :VLRNY 2cunA 232 :LAKGF T0287 69 :MKDYRAVIKSIG 2cunA 239 :GRKNVEFMKKKG T0287 81 :VDKFKKVYRLLES 2cunA 252 :LDYVKHAEEILDE T0287 121 :FLPFFSKPIMFKMSI 2cunA 265 :FYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKF 2cunA 306 :KRTAEKYREILMKA Number of specific fragments extracted= 11 number of extra gaps= 0 total=6207 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1648078256.pdb -s /var/tmp/to_scwrl_1648078256.seq -o /var/tmp/from_scwrl_1648078256.pdb > /var/tmp/scwrl_1648078256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1648078256.pdb Number of alignments=908 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cunA-t04-muscle.a2m.gz # 2cunA read from T0287-2cunA-t04-muscle.a2m.gz # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKKEKLI 2cunA 32 :DARFKAVLPTIRYLIESGAKVV T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 2cunA 100 :KELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVND T0287 72 :YRAVIKSIGVDKFKKVYR 2cunA 153 :HRSQPSLVGFARIKPMIM T0287 90 :LLESETMELLHAIAENPNFLF 2cunA 172 :FLMEKEIEALMRAYYSKDSPK T0287 111 :SKFDRSILGIFLPF 2cunA 215 :ERADLVLTGGLVAN T0287 125 :FSKPIMFKMS 2cunA 230 :FTLAKGFDLG T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDE 2cunA 255 :VKHAEEILDEFYPYIRTPVDFAVDYK T0287 161 :EVNFYANLKTIEQYNDYVRDL 2cunA 299 :YQIMDIGKRTAEKYREILMKA T0287 182 :LMKFDLEKY 2cunA 328 :MGVFEREEF T0287 191 :MKEKGVQNA 2cunA 365 :IQKYGITGI Number of specific fragments extracted= 11 number of extra gaps= 0 total=6218 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2045595107.pdb -s /var/tmp/to_scwrl_2045595107.seq -o /var/tmp/from_scwrl_2045595107.pdb > /var/tmp/scwrl_2045595107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2045595107.pdb Number of alignments=909 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-muscle.a2m.gz # 2cunA read from T0287-2cunA-t2k-muscle.a2m.gz # found chain 2cunA in template set T0287 1 :MSNNMRKLFSMIADSKDKK 2cunA 76 :LSELLDQHVEYIEDIFGRY T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 2cunA 96 :REKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVND T0287 72 :YRAVIKSIGVDKF 2cunA 153 :HRSQPSLVGFARI T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 2cunA 167 :PMIMGFLMEKEIEALMRAYYSKDSPKI T0287 112 :KFDRSILG 2cunA 216 :RADLVLTG T0287 120 :IFLPFFSKPIMFKM 2cunA 229 :VFTLAKGFDLGRKN T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYK T0287 161 :EVNFYANLKTIEQYNDYVRDL 2cunA 299 :YQIMDIGKRTAEKYREILMKA T0287 182 :LMKFDLEKY 2cunA 328 :MGVFEREEF T0287 191 :MKEKGVQNA 2cunA 365 :IQKYGITGI Number of specific fragments extracted= 10 number of extra gaps= 0 total=6228 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_373760671.pdb -s /var/tmp/to_scwrl_373760671.seq -o /var/tmp/from_scwrl_373760671.pdb > /var/tmp/scwrl_373760671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_373760671.pdb Number of alignments=910 # command:# Prefix for input files set to 2cw9A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t04-global-adpstyle1.a2m # 2cw9A read from 2cw9A-T0287-t04-global-adpstyle1.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)E193 because last residue in template chain is (2cw9A)I451 T0287 4 :NMRKLFSMIADSKDKKEKLIESLQE 2cw9A 272 :FIRASRALTDKVTDLLGGLFSKTEM T0287 38 :KKIIDQIKTMHDFFKQ 2cw9A 297 :SEVLTEILRVDPAFDK T0287 54 :MHTNKGA 2cw9A 316 :LKQCEND T0287 61 :LDKVLRNYMKDYRAVIKSIGVDKFKKVY 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQL T0287 89 :RLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMF 2cw9A 358 :AKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMV T0287 135 :IREMDSQIEL 2cw9A 401 :VRNPKGEVVE T0287 145 :YGTNLPLLKLFVMT 2cw9A 413 :PDKVLRMLYVWALC T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMK 2cw9A 427 :RDQDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6236 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1896912694.pdb -s /var/tmp/to_scwrl_1896912694.seq -o /var/tmp/from_scwrl_1896912694.pdb > /var/tmp/scwrl_1896912694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1896912694.pdb Number of alignments=911 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t04-global-adpstyle5.a2m # 2cw9A read from 2cw9A-T0287-t04-global-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)E193 because last residue in template chain is (2cw9A)I451 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 2cw9A 273 :IRASRALTDKVTDLLGGLFSKTEM T0287 38 :KKIIDQIKTMHDFFKQMH 2cw9A 297 :SEVLTEILRVDPAFDKDR T0287 56 :TNKGA 2cw9A 318 :QCEND T0287 61 :LDKVLRNYMKDYRAVIKS 2cw9A 324 :IPNVLEAMISGELDILKD T0287 79 :IGVDKFKKVYRLLESETMELL 2cw9A 353 :HPIQQAKALGLQFHSRILDID T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMF 2cw9A 374 :NVDLAMGKMVEQGPVLIITFQAQLVMV T0287 135 :IREMDSQIELYGTNLP 2cw9A 401 :VRNPKGEVVEGDPDKV T0287 156 :VMTDEEVNFY 2cw9A 417 :LRMLYVWALC T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMK 2cw9A 427 :RDQDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=6245 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_425969499.pdb -s /var/tmp/to_scwrl_425969499.seq -o /var/tmp/from_scwrl_425969499.pdb > /var/tmp/scwrl_425969499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_425969499.pdb Number of alignments=912 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t04-local-adpstyle1.a2m # 2cw9A read from 2cw9A-T0287-t04-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 105 :NPNFLFSKFDRSILGIFLP 2cw9A 307 :DPAFDKDRFLKQCENDIIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=6246 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t04-local-adpstyle5.a2m # 2cw9A read from 2cw9A-T0287-t04-local-adpstyle5.a2m # found chain 2cw9A in template set T0287 83 :KFKKVYRLLESE 2cw9A 357 :QAKALGLQFHSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6247 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t2k-global-adpstyle1.a2m # 2cw9A read from 2cw9A-T0287-t2k-global-adpstyle1.a2m # found chain 2cw9A in template set T0287 1 :MSNNMRKLFSMIADSKDKK 2cw9A 271 :AFIRASRALTDKVTDLLGG T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKV 2cw9A 290 :LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDI T0287 72 :YRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILD T0287 135 :IREMDSQIELYGTNLPLLKLFVMT 2cw9A 372 :IDNVDLAMGKMVEQGPVLIITFQA T0287 160 :EEVNFYAN 2cw9A 396 :QLVMVVRN T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cw9A 407 :EVVEGDPDKVLRMLYVWALCRDQDELNPYAA Number of specific fragments extracted= 6 number of extra gaps= 0 total=6253 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_563006609.pdb -s /var/tmp/to_scwrl_563006609.seq -o /var/tmp/from_scwrl_563006609.pdb > /var/tmp/scwrl_563006609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_563006609.pdb Number of alignments=913 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t2k-global-adpstyle5.a2m # 2cw9A read from 2cw9A-T0287-t2k-global-adpstyle5.a2m # found chain 2cw9A in template set T0287 3 :NNMRKLFSMIADSKDKKEK 2cw9A 271 :AFIRASRALTDKVTDLLGG T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTN 2cw9A 290 :LFSKTEMSEVLTEILRVDPAFDKDRFL T0287 58 :KG 2cw9A 320 :EN T0287 60 :ALDKVLRNYMKDYRAVIK 2cw9A 323 :IIPNVLEAMISGELDILK T0287 89 :RLLESETMELLHAIAENPNFLFSKFDRSILG 2cw9A 341 :DWCYEATYSQLAHPIQQAKALGLQFHSRILD T0287 130 :MFKMSIRE 2cw9A 377 :LAMGKMVE T0287 148 :NLPLLKLFVMT 2cw9A 385 :QGPVLIITFQA T0287 160 :EEVNFYAN 2cw9A 396 :QLVMVVRN T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cw9A 407 :EVVEGDPDKVLRMLYVWALCRDQDELNPYAA Number of specific fragments extracted= 9 number of extra gaps= 0 total=6262 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_886555050.pdb -s /var/tmp/to_scwrl_886555050.seq -o /var/tmp/from_scwrl_886555050.pdb > /var/tmp/scwrl_886555050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_886555050.pdb Number of alignments=914 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t2k-local-adpstyle1.a2m # 2cw9A read from 2cw9A-T0287-t2k-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 72 :YRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGI 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=6263 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_382145660.pdb -s /var/tmp/to_scwrl_382145660.seq -o /var/tmp/from_scwrl_382145660.pdb > /var/tmp/scwrl_382145660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_382145660.pdb Number of alignments=915 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t2k-local-adpstyle5.a2m # 2cw9A read from 2cw9A-T0287-t2k-local-adpstyle5.a2m # found chain 2cw9A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMH 2cw9A 291 :FSKTEMSEVLTEILRVDPAFDKDR T0287 56 :TNKG 2cw9A 318 :QCEN T0287 60 :ALDKVLRNYMKDYRAVIKSIGVD 2cw9A 323 :IIPNVLEAMISGELDILKDWCYE T0287 83 :KFKKV 2cw9A 357 :QAKAL Number of specific fragments extracted= 4 number of extra gaps= 0 total=6267 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1139463615.pdb -s /var/tmp/to_scwrl_1139463615.seq -o /var/tmp/from_scwrl_1139463615.pdb > /var/tmp/scwrl_1139463615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1139463615.pdb Number of alignments=916 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-simplesw-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-simplesw-adpstyle1.a2m # found chain 2cw9A in template set T0287 58 :KGALDKVLR 2cw9A 410 :EGDPDKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6268 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-simplesw-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-simplesw-adpstyle5.a2m # found chain 2cw9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6268 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-global-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t04-global-adpstyle1.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)L181 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESL 2cw9A 272 :FIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVL T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMT 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVWA T0287 159 :DEEVNFYANLKTIEQYNDYVRD 2cw9A 429 :QDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=6272 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1042227277.pdb -s /var/tmp/to_scwrl_1042227277.seq -o /var/tmp/from_scwrl_1042227277.pdb > /var/tmp/scwrl_1042227277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1042227277.pdb Number of alignments=917 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-global-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-global-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESL 2cw9A 271 :AFIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMI T0287 78 :SIGVDKFKKV 2cw9A 333 :SGELDILKDW T0287 90 :LLESETMELLHAIAEN 2cw9A 343 :CYEATYSQLAHPIQQA T0287 107 :NFLFSKFDRSILGI 2cw9A 359 :KALGLQFHSRILDI T0287 122 :LPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 2cw9A 388 :VLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYV T0287 165 :YANLKTIEQYNDYVRDLLMKFDL 2cw9A 423 :WALCRDQDELNPYAAWRLLDISA T0287 193 :EKGVQ 2cw9A 446 :SSTEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6280 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1597712674.pdb -s /var/tmp/to_scwrl_1597712674.seq -o /var/tmp/from_scwrl_1597712674.pdb > /var/tmp/scwrl_1597712674.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1597712674.pdb Number of alignments=918 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYMKDYRAVIKSIG 2cw9A 323 :IIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 195 :GVQ 2cw9A 448 :TEQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=6289 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1407148081.pdb -s /var/tmp/to_scwrl_1407148081.seq -o /var/tmp/from_scwrl_1407148081.pdb > /var/tmp/scwrl_1407148081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407148081.pdb Number of alignments=919 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESLQ 2cw9A 272 :FIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNY 2cw9A 323 :IIPNVLEAM T0287 77 :KSIGVDKFKKVY 2cw9A 332 :ISGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 197 :Q 2cw9A 450 :Q Number of specific fragments extracted= 10 number of extra gaps= 0 total=6299 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1578218716.pdb -s /var/tmp/to_scwrl_1578218716.seq -o /var/tmp/from_scwrl_1578218716.pdb > /var/tmp/scwrl_1578218716.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1578218716.pdb Number of alignments=920 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-local-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t04-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 58 :KGALDKVLR 2cw9A 410 :EGDPDKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6300 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-local-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-local-adpstyle5.a2m # found chain 2cw9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6300 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYMKDYRAVIKSIG 2cw9A 323 :IIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYAN 2cw9A 428 :DQDELNPYAA Number of specific fragments extracted= 8 number of extra gaps= 0 total=6308 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_876032730.pdb -s /var/tmp/to_scwrl_876032730.seq -o /var/tmp/from_scwrl_876032730.pdb > /var/tmp/scwrl_876032730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_876032730.pdb Number of alignments=921 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set T0287 12 :IADSKDKKEKLIESLQ 2cw9A 273 :IRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYM 2cw9A 323 :IIPNVLEAMI T0287 78 :SIGVDKFKKVY 2cw9A 333 :SGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYA 2cw9A 428 :DQDELNPYA Number of specific fragments extracted= 9 number of extra gaps= 0 total=6317 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_50749869.pdb -s /var/tmp/to_scwrl_50749869.seq -o /var/tmp/from_scwrl_50749869.pdb > /var/tmp/scwrl_50749869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_50749869.pdb Number of alignments=922 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-global-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t06-global-adpstyle1.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)L181 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESL 2cw9A 272 :FIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVL T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMT 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVWA T0287 159 :DEEVNFYANLKTIEQYNDYVRD 2cw9A 429 :QDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=6321 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1515530293.pdb -s /var/tmp/to_scwrl_1515530293.seq -o /var/tmp/from_scwrl_1515530293.pdb > /var/tmp/scwrl_1515530293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1515530293.pdb Number of alignments=923 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-global-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-global-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESL 2cw9A 271 :AFIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMI T0287 78 :SIGVDKFKKV 2cw9A 333 :SGELDILKDW T0287 90 :LLESETMELLHAIAEN 2cw9A 343 :CYEATYSQLAHPIQQA T0287 107 :NFLFSKFDRSILGI 2cw9A 359 :KALGLQFHSRILDI T0287 122 :LPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 2cw9A 388 :VLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYV T0287 165 :YANLKTIEQYNDYVRDLLMKFDL 2cw9A 423 :WALCRDQDELNPYAAWRLLDISA T0287 193 :EKGVQ 2cw9A 446 :SSTEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6329 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_759026372.pdb -s /var/tmp/to_scwrl_759026372.seq -o /var/tmp/from_scwrl_759026372.pdb > /var/tmp/scwrl_759026372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759026372.pdb Number of alignments=924 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYMKDYRAVIKSIG 2cw9A 323 :IIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 195 :GVQ 2cw9A 448 :TEQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=6338 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_872989919.pdb -s /var/tmp/to_scwrl_872989919.seq -o /var/tmp/from_scwrl_872989919.pdb > /var/tmp/scwrl_872989919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_872989919.pdb Number of alignments=925 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESLQ 2cw9A 272 :FIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNY 2cw9A 323 :IIPNVLEAM T0287 77 :KSIGVDKFKKVY 2cw9A 332 :ISGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 197 :Q 2cw9A 450 :Q Number of specific fragments extracted= 10 number of extra gaps= 0 total=6348 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1578325296.pdb -s /var/tmp/to_scwrl_1578325296.seq -o /var/tmp/from_scwrl_1578325296.pdb > /var/tmp/scwrl_1578325296.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1578325296.pdb Number of alignments=926 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-local-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t06-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 58 :KGALDKVLR 2cw9A 410 :EGDPDKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6349 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-local-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-local-adpstyle5.a2m # found chain 2cw9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6349 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYMKDYRAVIKSIG 2cw9A 323 :IIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYAN 2cw9A 428 :DQDELNPYAA Number of specific fragments extracted= 8 number of extra gaps= 0 total=6357 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_784186168.pdb -s /var/tmp/to_scwrl_784186168.seq -o /var/tmp/from_scwrl_784186168.pdb > /var/tmp/scwrl_784186168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784186168.pdb Number of alignments=927 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set T0287 12 :IADSKDKKEKLIESLQ 2cw9A 273 :IRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYM 2cw9A 323 :IIPNVLEAMI T0287 78 :SIGVDKFKKVY 2cw9A 333 :SGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYA 2cw9A 428 :DQDELNPYA Number of specific fragments extracted= 9 number of extra gaps= 0 total=6366 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_862233174.pdb -s /var/tmp/to_scwrl_862233174.seq -o /var/tmp/from_scwrl_862233174.pdb > /var/tmp/scwrl_862233174.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862233174.pdb Number of alignments=928 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-global-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t2k-global-adpstyle1.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)L181 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESL 2cw9A 272 :FIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVL T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMT 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVWA T0287 159 :DEEVNFYANLKTIEQYNDYVRD 2cw9A 429 :QDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=6370 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1960505647.pdb -s /var/tmp/to_scwrl_1960505647.seq -o /var/tmp/from_scwrl_1960505647.pdb > /var/tmp/scwrl_1960505647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960505647.pdb Number of alignments=929 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-global-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-global-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESL 2cw9A 271 :AFIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMI T0287 78 :SIGVDKFKKV 2cw9A 333 :SGELDILKDW T0287 90 :LLESETMELLHAIAEN 2cw9A 343 :CYEATYSQLAHPIQQA T0287 107 :NFLFSKFDRSILGI 2cw9A 359 :KALGLQFHSRILDI T0287 122 :LPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 2cw9A 388 :VLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYV T0287 165 :YANLKTIEQYNDYVRDLLMKFDL 2cw9A 423 :WALCRDQDELNPYAAWRLLDISA T0287 193 :EKGVQ 2cw9A 446 :SSTEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6378 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1296926877.pdb -s /var/tmp/to_scwrl_1296926877.seq -o /var/tmp/from_scwrl_1296926877.pdb > /var/tmp/scwrl_1296926877.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1296926877.pdb Number of alignments=930 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 2cw9A 307 :DPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 195 :GVQ 2cw9A 448 :TEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6386 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_604807533.pdb -s /var/tmp/to_scwrl_604807533.seq -o /var/tmp/from_scwrl_604807533.pdb > /var/tmp/scwrl_604807533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_604807533.pdb Number of alignments=931 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESLQ 2cw9A 272 :FIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNY 2cw9A 323 :IIPNVLEAM T0287 77 :KSIGVDKFKKVY 2cw9A 332 :ISGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 197 :Q 2cw9A 450 :Q Number of specific fragments extracted= 10 number of extra gaps= 0 total=6396 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1175481519.pdb -s /var/tmp/to_scwrl_1175481519.seq -o /var/tmp/from_scwrl_1175481519.pdb > /var/tmp/scwrl_1175481519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1175481519.pdb Number of alignments=932 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-local-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t2k-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 58 :KGALDKVLR 2cw9A 410 :EGDPDKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6397 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-local-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-local-adpstyle5.a2m # found chain 2cw9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6397 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 2cw9A 307 :DPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYAN 2cw9A 428 :DQDELNPYAA Number of specific fragments extracted= 7 number of extra gaps= 0 total=6404 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_162113619.pdb -s /var/tmp/to_scwrl_162113619.seq -o /var/tmp/from_scwrl_162113619.pdb > /var/tmp/scwrl_162113619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_162113619.pdb Number of alignments=933 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set T0287 12 :IADSKDKKEKLIESLQ 2cw9A 273 :IRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYM 2cw9A 323 :IIPNVLEAMI T0287 78 :SIGVDKFKKVY 2cw9A 333 :SGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYA 2cw9A 428 :DQDELNPYA Number of specific fragments extracted= 9 number of extra gaps= 0 total=6413 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_49224691.pdb -s /var/tmp/to_scwrl_49224691.seq -o /var/tmp/from_scwrl_49224691.pdb > /var/tmp/scwrl_49224691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49224691.pdb Number of alignments=934 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-muscle.a2m.gz # 2cw9A read from T0287-2cw9A-t04-muscle.a2m.gz # found chain 2cw9A in template set T0287 1 :MSNNMRKLFSMIADSKDK 2cw9A 272 :FIRASRALTDKVTDLLGG T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKV 2cw9A 290 :LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDI T0287 72 :YRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGI 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFY 2cw9A 373 :DNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVV T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cw9A 414 :DKVLRMLYVWALCRDQDELNPYAAWRLLDISASS Number of specific fragments extracted= 5 number of extra gaps= 0 total=6418 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_235858811.pdb -s /var/tmp/to_scwrl_235858811.seq -o /var/tmp/from_scwrl_235858811.pdb > /var/tmp/scwrl_235858811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_235858811.pdb Number of alignments=935 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-muscle.a2m.gz # 2cw9A read from T0287-2cw9A-t2k-muscle.a2m.gz # found chain 2cw9A in template set Warning: unaligning (T0287)M11 because first residue in template chain is (2cw9A)N270 T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKV 2cw9A 271 :AFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDI T0287 72 :YRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGI 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEV 2cw9A 373 :DNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKG T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cw9A 407 :EVVEGDPDKVLRMLYVWALCRDQDELNPYAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=6422 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1843213842.pdb -s /var/tmp/to_scwrl_1843213842.seq -o /var/tmp/from_scwrl_1843213842.pdb > /var/tmp/scwrl_1843213842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1843213842.pdb Number of alignments=936 # command:# Prefix for input files set to 2cz1A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t04-global-adpstyle1.a2m # 2cz1A read from 2cz1A-T0287-t04-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVM 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVN 2cz1A 162 :TTAETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 4 total=6430 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_28985284.pdb -s /var/tmp/to_scwrl_28985284.seq -o /var/tmp/from_scwrl_28985284.pdb > /var/tmp/scwrl_28985284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28985284.pdb Number of alignments=937 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t04-global-adpstyle5.a2m # 2cz1A read from 2cz1A-T0287-t04-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHT 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAEL T0287 57 :NKGALD 2cz1A 61 :ARAWTD T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 68 :EFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVM 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVN 2cz1A 162 :TTAETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQ 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIP Number of specific fragments extracted= 8 number of extra gaps= 4 total=6438 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1843514840.pdb -s /var/tmp/to_scwrl_1843514840.seq -o /var/tmp/from_scwrl_1843514840.pdb > /var/tmp/scwrl_1843514840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1843514840.pdb Number of alignments=938 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t04-local-adpstyle1.a2m # 2cz1A read from 2cz1A-T0287-t04-local-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLP 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 5 number of extra gaps= 3 total=6443 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1343808451.pdb -s /var/tmp/to_scwrl_1343808451.seq -o /var/tmp/from_scwrl_1343808451.pdb > /var/tmp/scwrl_1343808451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1343808451.pdb Number of alignments=939 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t04-local-adpstyle5.a2m # 2cz1A read from 2cz1A-T0287-t04-local-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 68 :EFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPL 2cz1A 137 :VREPRKVLSEMGTEIAS Number of specific fragments extracted= 4 number of extra gaps= 3 total=6447 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2074580392.pdb -s /var/tmp/to_scwrl_2074580392.seq -o /var/tmp/from_scwrl_2074580392.pdb > /var/tmp/scwrl_2074580392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074580392.pdb Number of alignments=940 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t2k-global-adpstyle1.a2m # 2cz1A read from 2cz1A-T0287-t2k-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDE 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVN 2cz1A 165 :ETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 4 total=6455 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_69791864.pdb -s /var/tmp/to_scwrl_69791864.seq -o /var/tmp/from_scwrl_69791864.pdb > /var/tmp/scwrl_69791864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_69791864.pdb Number of alignments=941 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t2k-global-adpstyle5.a2m # 2cz1A read from 2cz1A-T0287-t2k-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 1 :MSNN 2cz1A 9 :ENAA T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHT 2cz1A 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAEL T0287 57 :NKGALDK 2cz1A 61 :ARAWTDP T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 69 :FRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLF 2cz1A 137 :VREPRKVLSEMGTEIASDIEI T0287 156 :VMT 2cz1A 159 :VYD T0287 159 :DEEVN 2cz1A 163 :TAETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 11 number of extra gaps= 4 total=6466 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1093237498.pdb -s /var/tmp/to_scwrl_1093237498.seq -o /var/tmp/from_scwrl_1093237498.pdb > /var/tmp/scwrl_1093237498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093237498.pdb Number of alignments=942 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t2k-local-adpstyle1.a2m # 2cz1A read from 2cz1A-T0287-t2k-local-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLP 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 5 number of extra gaps= 3 total=6471 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_353066244.pdb -s /var/tmp/to_scwrl_353066244.seq -o /var/tmp/from_scwrl_353066244.pdb > /var/tmp/scwrl_353066244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_353066244.pdb Number of alignments=943 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t2k-local-adpstyle5.a2m # 2cz1A read from 2cz1A-T0287-t2k-local-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 69 :FRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLL 2cz1A 137 :VREPRKVLSEMGTEIASD Number of specific fragments extracted= 5 number of extra gaps= 3 total=6476 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_632798474.pdb -s /var/tmp/to_scwrl_632798474.seq -o /var/tmp/from_scwrl_632798474.pdb > /var/tmp/scwrl_632798474.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_632798474.pdb Number of alignments=944 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-simplesw-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-simplesw-adpstyle1.a2m # found chain 2cz1A in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2cz1A 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6477 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-simplesw-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-simplesw-adpstyle5.a2m # found chain 2cz1A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6477 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-global-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t04-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNT 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2cz1A 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVN 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 3 total=6485 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1979792548.pdb -s /var/tmp/to_scwrl_1979792548.seq -o /var/tmp/from_scwrl_1979792548.pdb > /var/tmp/scwrl_1979792548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1979792548.pdb Number of alignments=945 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-global-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEK 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2cz1A 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPL 2cz1A 137 :VREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2cz1A 157 :IRVYDTTAE T0287 162 :VN 2cz1A 166 :TR T0287 166 :ANLK 2cz1A 170 :VLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 11 number of extra gaps= 4 total=6496 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_735211904.pdb -s /var/tmp/to_scwrl_735211904.seq -o /var/tmp/from_scwrl_735211904.pdb > /var/tmp/scwrl_735211904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735211904.pdb Number of alignments=946 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKI 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGW T0287 48 :HDFFKQMHTNKGALDKVLRNYM 2cz1A 44 :KKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2cz1A 67 :PEFRQ T0287 90 :LLESETM 2cz1A 72 :LLLTDGT T0287 101 :AIAENPNFLFSKFDR 2cz1A 79 :AAVAQYGYLGPQGEY T0287 128 :PIMFK 2cz1A 94 :IVAVE T0287 148 :NLPLLKLFV 2cz1A 99 :DTPTLKNVI T0287 159 :D 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NL 2cz1A 119 :IL T0287 169 :KTIEQYNDYVRD 2cz1A 122 :LPPTWYKSFEYR T0287 184 :KFDLEKYMKEKGVQNA 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6508 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1772262089.pdb -s /var/tmp/to_scwrl_1772262089.seq -o /var/tmp/from_scwrl_1772262089.pdb > /var/tmp/scwrl_1772262089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1772262089.pdb Number of alignments=947 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 84 :F 2cz1A 116 :A T0287 87 :VYRLLES 2cz1A 119 :ILGLPPT T0287 94 :ETMELL 2cz1A 128 :KSFEYR T0287 103 :AENPNFLFSKFDRSI 2cz1A 137 :VREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLL 2cz1A 152 :ASDIEIRVYDTTAETR T0287 155 :FVMT 2cz1A 170 :VLPQ T0287 159 :DEEVNFY 2cz1A 175 :PAGTEGW T0287 170 :TIEQYNDYV 2cz1A 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2cz1A 192 :KDCLIGVAI T0287 195 :GV 2cz1A 202 :QV Number of specific fragments extracted= 13 number of extra gaps= 3 total=6521 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_874536179.pdb -s /var/tmp/to_scwrl_874536179.seq -o /var/tmp/from_scwrl_874536179.pdb > /var/tmp/scwrl_874536179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_874536179.pdb Number of alignments=948 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-local-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t04-local-adpstyle1.a2m # found chain 2cz1A in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2cz1A 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6522 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-local-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-local-adpstyle5.a2m # found chain 2cz1A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6522 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2cz1A 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2cz1A 67 :PEFRQ T0287 90 :LLESETM 2cz1A 72 :LLLTDGT T0287 101 :AIAENPNFLFSKFDR 2cz1A 79 :AAVAQYGYLGPQGEY T0287 128 :PIMFK 2cz1A 94 :IVAVE T0287 148 :NLPLLKLFV 2cz1A 99 :DTPTLKNVI T0287 159 :D 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NL 2cz1A 119 :IL T0287 169 :KTIEQYNDYVRD 2cz1A 122 :LPPTWYKSFEYR T0287 184 :KFDLEKYMKEKGVQNA 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6534 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_185440931.pdb -s /var/tmp/to_scwrl_185440931.seq -o /var/tmp/from_scwrl_185440931.pdb > /var/tmp/scwrl_185440931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_185440931.pdb Number of alignments=949 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGVDK 2cz1A 73 :LLTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2cz1A 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NLKTI 2cz1A 119 :ILGLP T0287 172 :EQYN 2cz1A 125 :TWYK T0287 176 :DYV 2cz1A 131 :EYR T0287 183 :M 2cz1A 137 :V T0287 185 :FDLEKYMKEKGVQNA 2cz1A 138 :REPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 3 total=6545 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1031926524.pdb -s /var/tmp/to_scwrl_1031926524.seq -o /var/tmp/from_scwrl_1031926524.pdb > /var/tmp/scwrl_1031926524.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031926524.pdb Number of alignments=950 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-global-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t06-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNT 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2cz1A 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVN 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 3 total=6553 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_305271248.pdb -s /var/tmp/to_scwrl_305271248.seq -o /var/tmp/from_scwrl_305271248.pdb > /var/tmp/scwrl_305271248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_305271248.pdb Number of alignments=951 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-global-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEK 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2cz1A 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPL 2cz1A 137 :VREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2cz1A 157 :IRVYDTTAE T0287 162 :VN 2cz1A 166 :TR T0287 166 :ANLK 2cz1A 170 :VLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 11 number of extra gaps= 4 total=6564 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1061473661.pdb -s /var/tmp/to_scwrl_1061473661.seq -o /var/tmp/from_scwrl_1061473661.pdb > /var/tmp/scwrl_1061473661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1061473661.pdb Number of alignments=952 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKI 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGW T0287 48 :HDFFKQMHTNKGALDKVLRNYM 2cz1A 44 :KKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2cz1A 67 :PEFRQ T0287 90 :LLESETM 2cz1A 72 :LLLTDGT T0287 101 :AIAENPNFLFSKFDR 2cz1A 79 :AAVAQYGYLGPQGEY T0287 128 :PIMFK 2cz1A 94 :IVAVE T0287 148 :NLPLLKLFV 2cz1A 99 :DTPTLKNVI T0287 159 :D 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NL 2cz1A 119 :IL T0287 169 :KTIEQYNDYVRD 2cz1A 122 :LPPTWYKSFEYR T0287 184 :KFDLEKYMKEKGVQNA 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6576 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1082676392.pdb -s /var/tmp/to_scwrl_1082676392.seq -o /var/tmp/from_scwrl_1082676392.pdb > /var/tmp/scwrl_1082676392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1082676392.pdb Number of alignments=953 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 84 :F 2cz1A 116 :A T0287 87 :VYRLLES 2cz1A 119 :ILGLPPT T0287 94 :ETMELL 2cz1A 128 :KSFEYR T0287 103 :AENPNFLFSKFDRSI 2cz1A 137 :VREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLL 2cz1A 152 :ASDIEIRVYDTTAETR T0287 155 :FVMT 2cz1A 170 :VLPQ T0287 159 :DEEVNFY 2cz1A 175 :PAGTEGW T0287 170 :TIEQYNDYV 2cz1A 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2cz1A 192 :KDCLIGVAI T0287 195 :GV 2cz1A 202 :QV Number of specific fragments extracted= 13 number of extra gaps= 3 total=6589 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1820801542.pdb -s /var/tmp/to_scwrl_1820801542.seq -o /var/tmp/from_scwrl_1820801542.pdb > /var/tmp/scwrl_1820801542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820801542.pdb Number of alignments=954 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-local-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t06-local-adpstyle1.a2m # found chain 2cz1A in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2cz1A 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6590 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-local-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-local-adpstyle5.a2m # found chain 2cz1A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6590 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2cz1A 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2cz1A 67 :PEFRQ T0287 90 :LLESETM 2cz1A 72 :LLLTDGT T0287 101 :AIAENPNFLFSKFDR 2cz1A 79 :AAVAQYGYLGPQGEY T0287 128 :PIMFK 2cz1A 94 :IVAVE T0287 148 :NLPLLKLFV 2cz1A 99 :DTPTLKNVI T0287 159 :D 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NL 2cz1A 119 :IL T0287 169 :KTIEQYNDYVRD 2cz1A 122 :LPPTWYKSFEYR T0287 184 :KFDLEKYMKEKGVQNA 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6602 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1820500032.pdb -s /var/tmp/to_scwrl_1820500032.seq -o /var/tmp/from_scwrl_1820500032.pdb > /var/tmp/scwrl_1820500032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820500032.pdb Number of alignments=955 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGVDK 2cz1A 73 :LLTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2cz1A 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NLKTI 2cz1A 119 :ILGLP T0287 172 :EQYN 2cz1A 125 :TWYK T0287 176 :DYV 2cz1A 131 :EYR T0287 183 :M 2cz1A 137 :V T0287 185 :FDLEKYMKEKGVQNA 2cz1A 138 :REPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 3 total=6613 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1955666311.pdb -s /var/tmp/to_scwrl_1955666311.seq -o /var/tmp/from_scwrl_1955666311.pdb > /var/tmp/scwrl_1955666311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1955666311.pdb Number of alignments=956 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-global-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t2k-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNT 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2cz1A 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVN 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 3 total=6621 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1251643191.pdb -s /var/tmp/to_scwrl_1251643191.seq -o /var/tmp/from_scwrl_1251643191.pdb > /var/tmp/scwrl_1251643191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1251643191.pdb Number of alignments=957 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-global-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEK 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2cz1A 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPL 2cz1A 137 :VREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2cz1A 157 :IRVYDTTAE T0287 162 :VN 2cz1A 166 :TR T0287 166 :ANLK 2cz1A 170 :VLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 11 number of extra gaps= 4 total=6632 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_457202554.pdb -s /var/tmp/to_scwrl_457202554.seq -o /var/tmp/from_scwrl_457202554.pdb > /var/tmp/scwrl_457202554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457202554.pdb Number of alignments=958 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 90 :LL 2cz1A 119 :IL T0287 92 :ESETMELL 2cz1A 126 :WYKSFEYR T0287 103 :AENPNFLFSKFDRSI 2cz1A 137 :VREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLL 2cz1A 152 :ASDIEIRVYDTTAETR T0287 155 :FVMTDEEVN 2cz1A 170 :VLPQRPAGT T0287 167 :NLKTIEQYNDYV 2cz1A 179 :EGWSQEQLQEIV T0287 179 :RDLLMKFDL 2cz1A 192 :KDCLIGVAI T0287 195 :GV 2cz1A 202 :QV Number of specific fragments extracted= 11 number of extra gaps= 3 total=6643 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_670415838.pdb -s /var/tmp/to_scwrl_670415838.seq -o /var/tmp/from_scwrl_670415838.pdb > /var/tmp/scwrl_670415838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_670415838.pdb Number of alignments=959 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 84 :F 2cz1A 116 :A T0287 87 :VYRLLES 2cz1A 119 :ILGLPPT T0287 94 :ETMELL 2cz1A 128 :KSFEYR T0287 103 :AENPNFLFSKFDRSI 2cz1A 137 :VREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLL 2cz1A 152 :ASDIEIRVYDTTAETR T0287 155 :FVMT 2cz1A 170 :VLPQ T0287 159 :DEEVNFY 2cz1A 175 :PAGTEGW T0287 170 :TIEQYNDYV 2cz1A 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2cz1A 192 :KDCLIGVAI T0287 195 :GV 2cz1A 202 :QV Number of specific fragments extracted= 13 number of extra gaps= 3 total=6656 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1064665192.pdb -s /var/tmp/to_scwrl_1064665192.seq -o /var/tmp/from_scwrl_1064665192.pdb > /var/tmp/scwrl_1064665192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064665192.pdb Number of alignments=960 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-local-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t2k-local-adpstyle1.a2m # found chain 2cz1A in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2cz1A 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6657 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-local-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-local-adpstyle5.a2m # found chain 2cz1A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6657 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 109 :L 2cz1A 87 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=6661 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1754129431.pdb -s /var/tmp/to_scwrl_1754129431.seq -o /var/tmp/from_scwrl_1754129431.pdb > /var/tmp/scwrl_1754129431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754129431.pdb Number of alignments=961 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGVDK 2cz1A 73 :LLTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2cz1A 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NLKTI 2cz1A 119 :ILGLP T0287 172 :EQYN 2cz1A 125 :TWYK T0287 176 :DYV 2cz1A 131 :EYR T0287 183 :M 2cz1A 137 :V T0287 185 :FDLEKYMKEKGVQNA 2cz1A 138 :REPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 3 total=6672 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1275223371.pdb -s /var/tmp/to_scwrl_1275223371.seq -o /var/tmp/from_scwrl_1275223371.pdb > /var/tmp/scwrl_1275223371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1275223371.pdb Number of alignments=962 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-muscle.a2m.gz # 2cz1A read from T0287-2cz1A-t04-muscle.a2m.gz # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAE T0287 56 :TNKGALDKVLRNYM 2cz1A 60 :VARAWTDPEFRQLL T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 75 :TDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVM 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVN 2cz1A 162 :TTAETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 9 number of extra gaps= 4 total=6681 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_92663064.pdb -s /var/tmp/to_scwrl_92663064.seq -o /var/tmp/from_scwrl_92663064.pdb > /var/tmp/scwrl_92663064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_92663064.pdb Number of alignments=963 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-muscle.a2m.gz # 2cz1A read from T0287-2cz1A-t2k-muscle.a2m.gz # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDE 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVN 2cz1A 165 :ETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 4 total=6689 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1916243051.pdb -s /var/tmp/to_scwrl_1916243051.seq -o /var/tmp/from_scwrl_1916243051.pdb > /var/tmp/scwrl_1916243051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916243051.pdb Number of alignments=964 # command:# Prefix for input files set to 2sas/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-fssp-global-adpstyle5.a2m # 2sas read from 2sas-T0287-fssp-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 5 :MRKLFSMIADSK 2sas 10 :IKFTFDFFLDMN T0287 17 :DKKEK 2sas 29 :NDFED T0287 24 :ESL 2sas 36 :TRY T0287 29 :N 2sas 41 :V T0287 32 :LNTDEKKKIIDQI 2sas 46 :LSDADYKSMQASL T0287 47 :MHDFFK 2sas 61 :EWRDLK T0287 53 :QMHTNKGAL 2sas 68 :RADINKDDV T0287 63 :KVLRNYMKDYRAVIKS 2sas 77 :VSWEEYLAMWEKTIAT T0287 84 :FKKVYR 2sas 93 :CKSVAD T0287 98 :LLHAIAENPNFLFSKFDRSILG 2sas 99 :LPAWCQNRIPFLFKGMDVSGDG T0287 122 :LP 2sas 123 :DL T0287 125 :FSKPI 2sas 125 :EEFQN T0287 132 :K 2sas 132 :K T0287 143 :ELYGTNLPLLKLFVMTDEEVNF 2sas 135 :QLQCADVPAVYNVITDGGKVTF T0287 170 :TIEQ 2sas 157 :DLNR T0287 176 :DYVRDLLMKFDLEKYMKEK 2sas 163 :ELYYRLLTSPAADAGNTLM Number of specific fragments extracted= 17 number of extra gaps= 9 total=6706 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1324448062.pdb -s /var/tmp/to_scwrl_1324448062.seq -o /var/tmp/from_scwrl_1324448062.pdb > /var/tmp/scwrl_1324448062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324448062.pdb Number of alignments=965 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-fssp-local-adpstyle5.a2m # 2sas read from 2sas-T0287-fssp-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 40 :IIDQIKTMHDFFKQMHTNK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 79 :IGVDKFKKVYRLL 2sas 46 :LSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 6 number of extra gaps= 5 total=6712 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t04-global-adpstyle1.a2m # 2sas read from 2sas-T0287-t04-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)A13 because first residue in template chain is (2sas)G1 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I41 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)R66 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)L187 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 14 :DS 2sas 2 :LN T0287 18 :KKEKLIE 2sas 6 :QKQKIKF T0287 25 :SLQENE 2sas 19 :DMNHDG T0287 33 :NTDEKKK 2sas 27 :QDNDFED T0287 42 :DQI 2sas 36 :TRY T0287 47 :M 2sas 41 :V T0287 50 :F 2sas 44 :G T0287 52 :KQMHTNKGALDKVL 2sas 45 :SLSDADYKSMQASL T0287 68 :YMKDYRAVI 2sas 61 :EWRDLKGRA T0287 77 :KSIGVDKFKKVYRLL 2sas 75 :DVVSWEEYLAMWEKT T0287 165 :YANLKTIEQYNDYVRDLLMKF 2sas 90 :IATCKSVADLPAWCQNRIPFL T0287 186 :D 2sas 160 :R T0287 189 :KYMKEKGVQNA 2sas 163 :ELYYRLLTSPA Number of specific fragments extracted= 13 number of extra gaps= 7 total=6725 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_328521876.pdb -s /var/tmp/to_scwrl_328521876.seq -o /var/tmp/from_scwrl_328521876.pdb > /var/tmp/scwrl_328521876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328521876.pdb Number of alignments=966 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t04-global-adpstyle5.a2m # 2sas read from 2sas-T0287-t04-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I41 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 T0287 3 :NNMRKLFSMIADSK 2sas 8 :QKIKFTFDFFLDMN T0287 28 :ENE 2sas 22 :HDG T0287 33 :NTDEKKK 2sas 27 :QDNDFED T0287 42 :DQI 2sas 36 :TRY T0287 47 :MHDFFKQMHTNKGAL 2sas 62 :WRDLKGRADINKDDV T0287 79 :IGVDKFKKVYRLL 2sas 77 :VSWEEYLAMWEKT T0287 100 :HAIAENPNFLFSKFDR 2sas 101 :AWCQNRIPFLFKGMDV T0287 157 :MTDEEVNFY 2sas 136 :LQCADVPAV T0287 174 :YNDY 2sas 145 :YNVI T0287 179 :RDL 2sas 149 :TDG T0287 183 :MKFDLE 2sas 152 :GKVTFD T0287 189 :KYMKEK 2sas 163 :ELYYRL T0287 195 :GVQ 2sas 181 :MGQ Number of specific fragments extracted= 13 number of extra gaps= 3 total=6738 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1611973246.pdb -s /var/tmp/to_scwrl_1611973246.seq -o /var/tmp/from_scwrl_1611973246.pdb > /var/tmp/scwrl_1611973246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1611973246.pdb Number of alignments=967 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t04-local-adpstyle1.a2m # 2sas read from 2sas-T0287-t04-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)V87 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 80 :GVDKFKK 2sas 27 :QDNDFED T0287 91 :LESETMELLHAIAEN 2sas 44 :GSLSDADYKSMQASL T0287 106 :PNFLFSKFDRSILGI 2sas 62 :WRDLKGRADINKDDV T0287 121 :FLPFFSKP 2sas 82 :YLAMWEKT T0287 165 :YANLKTIEQ 2sas 90 :IATCKSVAD T0287 174 :YNDYVRDLLMKFDLEK 2sas 103 :CQNRIPFLFKGMDVSG Number of specific fragments extracted= 6 number of extra gaps= 1 total=6744 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1353433346.pdb -s /var/tmp/to_scwrl_1353433346.seq -o /var/tmp/from_scwrl_1353433346.pdb > /var/tmp/scwrl_1353433346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353433346.pdb Number of alignments=968 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t04-local-adpstyle5.a2m # 2sas read from 2sas-T0287-t04-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)V87 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 80 :GVDKFKK 2sas 27 :QDNDFED T0287 91 :LESETMELLHAIAEN 2sas 44 :GSLSDADYKSMQASL T0287 106 :PNFLFSKFDRSILG 2sas 62 :WRDLKGRADINKDD T0287 120 :IFLPFFSKP 2sas 81 :EYLAMWEKT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6748 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_24553069.pdb -s /var/tmp/to_scwrl_24553069.seq -o /var/tmp/from_scwrl_24553069.pdb > /var/tmp/scwrl_24553069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_24553069.pdb Number of alignments=969 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t2k-global-adpstyle1.a2m # 2sas read from 2sas-T0287-t2k-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)S25 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSNNMRKLFSMIADSKDKK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 27 :QENELLN 2sas 27 :QDNDFED T0287 36 :EKK 2sas 36 :TRY T0287 41 :I 2sas 41 :V T0287 44 :IKTMHDFFKQ 2sas 44 :GSLSDADYKS T0287 54 :MHTN 2sas 55 :QASL T0287 60 :ALDKVLRNYMKDYR 2sas 61 :EWRDLKGRADINKD T0287 77 :KSIGVDKFKKV 2sas 75 :DVVSWEEYLAM T0287 88 :YRLLESETMELLHAIAENPNFLFSKFDRS 2sas 89 :TIATCKSVADLPAWCQNRIPFLFKGMDVS T0287 134 :SIREMDS 2sas 123 :DLEEFQN T0287 143 :E 2sas 132 :K T0287 146 :G 2sas 135 :Q T0287 157 :MTDEEVNFYANLKTIEQ 2sas 136 :LQCADVPAVYNVITDGG T0287 174 :YND 2sas 158 :LNR T0287 179 :RDLLMKFDLEKYMKEKGVQNA 2sas 163 :ELYYRLLTSPAADAGNTLMGQ Number of specific fragments extracted= 15 number of extra gaps= 8 total=6763 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_808298051.pdb -s /var/tmp/to_scwrl_808298051.seq -o /var/tmp/from_scwrl_808298051.pdb > /var/tmp/scwrl_808298051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_808298051.pdb Number of alignments=970 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t2k-global-adpstyle5.a2m # 2sas read from 2sas-T0287-t2k-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)S25 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSNNMRKLFSMIADSKDK 2sas 6 :QKQKIKFTFDFFLDMNHD T0287 27 :QENELLN 2sas 27 :QDNDFED T0287 36 :EKK 2sas 36 :TRY T0287 41 :I 2sas 41 :V T0287 44 :IKTMHDFFKQ 2sas 44 :GSLSDADYKS T0287 54 :MHTN 2sas 55 :QASL T0287 60 :ALDKVLRNYMKDYR 2sas 61 :EWRDLKGRADINKD T0287 77 :KSIGVDKFKKVYR 2sas 75 :DVVSWEEYLAMWE T0287 90 :LLESETMELLHAIAENPNFLFSKFDRS 2sas 91 :ATCKSVADLPAWCQNRIPFLFKGMDVS T0287 134 :SIREMDS 2sas 123 :DLEEFQN T0287 143 :E 2sas 132 :K T0287 146 :G 2sas 135 :Q T0287 157 :MTDEEVNFYANLK 2sas 136 :LQCADVPAVYNVI T0287 170 :TIEQ 2sas 157 :DLNR T0287 176 :DYVRDLLMK 2sas 163 :ELYYRLLTS T0287 186 :DLEKYMKEKGVQNA 2sas 172 :PAADAGNTLMGQKP Number of specific fragments extracted= 16 number of extra gaps= 7 total=6779 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1280530091.pdb -s /var/tmp/to_scwrl_1280530091.seq -o /var/tmp/from_scwrl_1280530091.pdb > /var/tmp/scwrl_1280530091.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1280530091.pdb Number of alignments=971 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t2k-local-adpstyle1.a2m # 2sas read from 2sas-T0287-t2k-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 128 :PIMFKMS 2sas 52 :KSMQASL T0287 137 :EMDSQIELYGTN 2sas 61 :EWRDLKGRADIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6781 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t2k-local-adpstyle5.a2m # 2sas read from 2sas-T0287-t2k-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)K70 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 71 :DYRAVIKSIGVDK 2sas 61 :EWRDLKGRADINK T0287 84 :FKKV 2sas 82 :YLAM T0287 88 :YRLLESETMELLHAIAENPNFLFSKFDRS 2sas 89 :TIATCKSVADLPAWCQNRIPFLFKGMDVS Number of specific fragments extracted= 3 number of extra gaps= 0 total=6784 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_94344933.pdb -s /var/tmp/to_scwrl_94344933.seq -o /var/tmp/from_scwrl_94344933.pdb > /var/tmp/scwrl_94344933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94344933.pdb Number of alignments=972 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-simplesw-adpstyle1.a2m # 2sas read from T0287-2sas-simplesw-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :S 2sas 44 :G Number of specific fragments extracted= 5 number of extra gaps= 4 total=6789 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-simplesw-adpstyle5.a2m # 2sas read from T0287-2sas-simplesw-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHA 2sas 61 :EWRDLKGR Number of specific fragments extracted= 6 number of extra gaps= 5 total=6795 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-global-adpstyle1.a2m # 2sas read from T0287-2sas-t04-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSKFD 2sas 61 :EWRDLKGRADINKDDVVSWEE T0287 121 :FLPFFSKPIMFKMSIREM 2sas 82 :YLAMWEKTIATCKSVADL T0287 139 :DSQIELYGTNLPLLKLF 2sas 104 :QNRIPFLFKGMDVSGDG T0287 158 :TDEEVNF 2sas 123 :DLEEFQN T0287 167 :N 2sas 132 :K T0287 170 :TIE 2sas 135 :QLQ T0287 173 :QYNDYVRDLLMKFDLEK 2sas 144 :VYNVITDGGKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 15 number of extra gaps= 10 total=6810 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1901535549.pdb -s /var/tmp/to_scwrl_1901535549.seq -o /var/tmp/from_scwrl_1901535549.pdb > /var/tmp/scwrl_1901535549.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1901535549.pdb Number of alignments=973 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-global-adpstyle5.a2m # 2sas read from T0287-2sas-t04-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMSIREMDS 2sas 79 :WEEYLAMWEKTIATCKSVADLPA T0287 141 :QIELYGTNLPLLKL 2sas 106 :RIPFLFKGMDVSGD T0287 157 :MTDEEVN 2sas 123 :DLEEFQN T0287 166 :A 2sas 132 :K T0287 169 :K 2sas 135 :Q T0287 170 :TI 2sas 140 :DV T0287 172 :EQYNDYVRDLLMKFDLEK 2sas 143 :AVYNVITDGGKVTFDLNR T0287 192 :KEK 2sas 163 :ELY Number of specific fragments extracted= 16 number of extra gaps= 10 total=6826 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1633596335.pdb -s /var/tmp/to_scwrl_1633596335.seq -o /var/tmp/from_scwrl_1633596335.pdb > /var/tmp/scwrl_1633596335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1633596335.pdb Number of alignments=974 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSK 2sas 61 :EWRDLKGRADINKDDVVSW T0287 113 :FDRSILGI 2sas 86 :WEKTIATC T0287 122 :LPFF 2sas 99 :LPAW T0287 128 :PIMFKMSIREMDS 2sas 108 :PFLFKGMDVSGDG T0287 143 :EL 2sas 123 :DL T0287 147 :T 2sas 132 :K T0287 150 :PL 2sas 135 :QL T0287 167 :NLKTIEQYNDYVRD 2sas 137 :QCADVPAVYNVITD T0287 181 :LLMKFDLEK 2sas 152 :GKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 18 number of extra gaps= 10 total=6844 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_727143407.pdb -s /var/tmp/to_scwrl_727143407.seq -o /var/tmp/from_scwrl_727143407.pdb > /var/tmp/scwrl_727143407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_727143407.pdb Number of alignments=975 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 8 :LFSMIAD 2sas 13 :TFDFFLD T0287 15 :SKDKKEK 2sas 27 :QDNDFED T0287 24 :ESL 2sas 36 :TRY T0287 30 :ELLNTDEKKKIIDQI 2sas 44 :GSLSDADYKSMQASL T0287 47 :MHDFF 2sas 61 :EWRDL T0287 52 :KQMHTNKGA 2sas 67 :GRADINKDD T0287 65 :LRNYMKDYRAVIKSIG 2sas 79 :WEEYLAMWEKTIATCK T0287 81 :VDKFKKVYRLLESET 2sas 100 :PAWCQNRIPFLFKGM T0287 96 :MELLHA 2sas 124 :LEEFQN T0287 104 :E 2sas 132 :K T0287 107 :NFLFSKFDRSILGIF 2sas 135 :QLQCADVPAVYNVIT T0287 158 :TDEEVNFY 2sas 150 :DGGKVTFD T0287 171 :IEQ 2sas 158 :LNR T0287 176 :DYVRDLLMKFD 2sas 163 :ELYYRLLTSPA T0287 196 :VQNA 2sas 182 :GQKP Number of specific fragments extracted= 17 number of extra gaps= 8 total=6861 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1733844451.pdb -s /var/tmp/to_scwrl_1733844451.seq -o /var/tmp/from_scwrl_1733844451.pdb > /var/tmp/scwrl_1733844451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1733844451.pdb Number of alignments=976 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-local-adpstyle1.a2m # 2sas read from T0287-2sas-t04-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :S 2sas 44 :G Number of specific fragments extracted= 5 number of extra gaps= 4 total=6866 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-local-adpstyle5.a2m # 2sas read from T0287-2sas-t04-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMS 2sas 79 :WEEYLAMWEKTIATCKS Number of specific fragments extracted= 7 number of extra gaps= 5 total=6873 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_221324592.pdb -s /var/tmp/to_scwrl_221324592.seq -o /var/tmp/from_scwrl_221324592.pdb > /var/tmp/scwrl_221324592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_221324592.pdb Number of alignments=977 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 40 :IIDQIKTMHDFFKQMHTNK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 5 total=6880 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_351921849.pdb -s /var/tmp/to_scwrl_351921849.seq -o /var/tmp/from_scwrl_351921849.pdb > /var/tmp/scwrl_351921849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_351921849.pdb Number of alignments=978 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 37 :K 2sas 6 :Q T0287 41 :IDQIKTMHDFFKQMHTNK 2sas 7 :KQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 6 total=6887 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-global-adpstyle1.a2m # 2sas read from T0287-2sas-t06-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSKFD 2sas 61 :EWRDLKGRADINKDDVVSWEE T0287 121 :FLPFFSKPIMFKMSIREM 2sas 82 :YLAMWEKTIATCKSVADL T0287 139 :DSQIELYGTNLPLLKLF 2sas 104 :QNRIPFLFKGMDVSGDG T0287 158 :TDEEVNF 2sas 123 :DLEEFQN T0287 167 :N 2sas 132 :K T0287 170 :TIE 2sas 135 :QLQ T0287 173 :QYNDYVRDLLMKFDLEK 2sas 144 :VYNVITDGGKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 15 number of extra gaps= 10 total=6902 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_460896983.pdb -s /var/tmp/to_scwrl_460896983.seq -o /var/tmp/from_scwrl_460896983.pdb > /var/tmp/scwrl_460896983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460896983.pdb Number of alignments=979 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-global-adpstyle5.a2m # 2sas read from T0287-2sas-t06-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMSIREMDS 2sas 79 :WEEYLAMWEKTIATCKSVADLPA T0287 141 :QIELYGTNLPLLKL 2sas 106 :RIPFLFKGMDVSGD T0287 157 :MTDEEVN 2sas 123 :DLEEFQN T0287 166 :A 2sas 132 :K T0287 169 :K 2sas 135 :Q T0287 170 :TI 2sas 140 :DV T0287 172 :EQYNDYVRDLLMKFDLEK 2sas 143 :AVYNVITDGGKVTFDLNR T0287 192 :KEK 2sas 163 :ELY Number of specific fragments extracted= 16 number of extra gaps= 10 total=6918 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_406765523.pdb -s /var/tmp/to_scwrl_406765523.seq -o /var/tmp/from_scwrl_406765523.pdb > /var/tmp/scwrl_406765523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_406765523.pdb Number of alignments=980 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSK 2sas 61 :EWRDLKGRADINKDDVVSW T0287 113 :FDRSILGI 2sas 86 :WEKTIATC T0287 122 :LPFF 2sas 99 :LPAW T0287 128 :PIMFKMSIREMDS 2sas 108 :PFLFKGMDVSGDG T0287 143 :EL 2sas 123 :DL T0287 147 :T 2sas 132 :K T0287 150 :PL 2sas 135 :QL T0287 167 :NLKTIEQYNDYVRD 2sas 137 :QCADVPAVYNVITD T0287 181 :LLMKFDLEK 2sas 152 :GKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 18 number of extra gaps= 10 total=6936 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1383848372.pdb -s /var/tmp/to_scwrl_1383848372.seq -o /var/tmp/from_scwrl_1383848372.pdb > /var/tmp/scwrl_1383848372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1383848372.pdb Number of alignments=981 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 8 :LFSMIAD 2sas 13 :TFDFFLD T0287 15 :SKDKKEK 2sas 27 :QDNDFED T0287 24 :ESL 2sas 36 :TRY T0287 30 :ELLNTDEKKKIIDQI 2sas 44 :GSLSDADYKSMQASL T0287 47 :MHDFF 2sas 61 :EWRDL T0287 52 :KQMHTNKGA 2sas 67 :GRADINKDD T0287 65 :LRNYMKDYRAVIKSIG 2sas 79 :WEEYLAMWEKTIATCK T0287 81 :VDKFKKVYRLLESET 2sas 100 :PAWCQNRIPFLFKGM T0287 96 :MELLHA 2sas 124 :LEEFQN T0287 104 :E 2sas 132 :K T0287 107 :NFLFSKFDRSILGIF 2sas 135 :QLQCADVPAVYNVIT T0287 158 :TDEEVNFY 2sas 150 :DGGKVTFD T0287 171 :IEQ 2sas 158 :LNR T0287 176 :DYVRDLLMKFD 2sas 163 :ELYYRLLTSPA T0287 196 :VQNA 2sas 182 :GQKP Number of specific fragments extracted= 17 number of extra gaps= 8 total=6953 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_766168231.pdb -s /var/tmp/to_scwrl_766168231.seq -o /var/tmp/from_scwrl_766168231.pdb > /var/tmp/scwrl_766168231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_766168231.pdb Number of alignments=982 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-local-adpstyle1.a2m # 2sas read from T0287-2sas-t06-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :S 2sas 44 :G Number of specific fragments extracted= 5 number of extra gaps= 4 total=6958 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-local-adpstyle5.a2m # 2sas read from T0287-2sas-t06-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMS 2sas 79 :WEEYLAMWEKTIATCKS Number of specific fragments extracted= 7 number of extra gaps= 5 total=6965 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1468239184.pdb -s /var/tmp/to_scwrl_1468239184.seq -o /var/tmp/from_scwrl_1468239184.pdb > /var/tmp/scwrl_1468239184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1468239184.pdb Number of alignments=983 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 40 :IIDQIKTMHDFFKQMHTNK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 5 total=6972 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_319041118.pdb -s /var/tmp/to_scwrl_319041118.seq -o /var/tmp/from_scwrl_319041118.pdb > /var/tmp/scwrl_319041118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_319041118.pdb Number of alignments=984 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 37 :K 2sas 6 :Q T0287 41 :IDQIKTMHDFFKQMHTNK 2sas 7 :KQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 6 total=6979 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-global-adpstyle1.a2m # 2sas read from T0287-2sas-t2k-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSKFD 2sas 61 :EWRDLKGRADINKDDVVSWEE T0287 121 :FLPFFSKPIMFKMSIREM 2sas 82 :YLAMWEKTIATCKSVADL T0287 139 :DSQIELYGTNLPLLKLF 2sas 104 :QNRIPFLFKGMDVSGDG T0287 158 :TDEEVNF 2sas 123 :DLEEFQN T0287 167 :N 2sas 132 :K T0287 170 :TIE 2sas 135 :QLQ T0287 173 :QYNDYVRDLLMKFDLEK 2sas 144 :VYNVITDGGKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 15 number of extra gaps= 10 total=6994 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_439486126.pdb -s /var/tmp/to_scwrl_439486126.seq -o /var/tmp/from_scwrl_439486126.pdb > /var/tmp/scwrl_439486126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439486126.pdb Number of alignments=985 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-global-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMSIREMDS 2sas 79 :WEEYLAMWEKTIATCKSVADLPA T0287 141 :QIELYGTNLPLLKL 2sas 106 :RIPFLFKGMDVSGD T0287 157 :MTDEEVN 2sas 123 :DLEEFQN T0287 166 :A 2sas 132 :K T0287 169 :K 2sas 135 :Q T0287 170 :TI 2sas 140 :DV T0287 172 :EQYNDYVRDLLMKFDLEK 2sas 143 :AVYNVITDGGKVTFDLNR T0287 192 :KEK 2sas 163 :ELY Number of specific fragments extracted= 16 number of extra gaps= 10 total=7010 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1141255569.pdb -s /var/tmp/to_scwrl_1141255569.seq -o /var/tmp/from_scwrl_1141255569.pdb > /var/tmp/scwrl_1141255569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1141255569.pdb Number of alignments=986 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RKL 2sas 6 :QKQ T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSK 2sas 61 :EWRDLKGRADINKDDVVSW T0287 113 :FDRSIL 2sas 86 :WEKTIA T0287 131 :FKMSIREMDSQ 2sas 92 :TCKSVADLPAW T0287 142 :IELYGTN 2sas 114 :MDVSGDG T0287 151 :LL 2sas 123 :DL T0287 160 :EE 2sas 125 :EE T0287 162 :VN 2sas 128 :QN T0287 166 :A 2sas 132 :K T0287 169 :KTIEQYNDYVRDLLMK 2sas 135 :QLQCADVPAVYNVITD T0287 185 :FDLEK 2sas 156 :FDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 18 number of extra gaps= 10 total=7028 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_127223783.pdb -s /var/tmp/to_scwrl_127223783.seq -o /var/tmp/from_scwrl_127223783.pdb > /var/tmp/scwrl_127223783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127223783.pdb Number of alignments=987 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 8 :LFSMIAD 2sas 13 :TFDFFLD T0287 15 :SKDKKEK 2sas 27 :QDNDFED T0287 24 :ESL 2sas 36 :TRY T0287 30 :ELLNTDEKKKIIDQI 2sas 44 :GSLSDADYKSMQASL T0287 47 :MHDFF 2sas 61 :EWRDL T0287 52 :KQMHTNKGA 2sas 67 :GRADINKDD T0287 65 :LRNYMKDYRAVIKSIG 2sas 79 :WEEYLAMWEKTIATCK T0287 81 :VDKFKKVYRLLESET 2sas 100 :PAWCQNRIPFLFKGM T0287 96 :MELLHA 2sas 124 :LEEFQN T0287 104 :E 2sas 132 :K T0287 107 :NFLFSKFDRSILGIF 2sas 135 :QLQCADVPAVYNVIT T0287 158 :TDEEVNFY 2sas 150 :DGGKVTFD T0287 171 :IEQ 2sas 158 :LNR T0287 176 :DYVRDLLMKFD 2sas 163 :ELYYRLLTSPA T0287 196 :VQNA 2sas 182 :GQKP Number of specific fragments extracted= 17 number of extra gaps= 8 total=7045 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1691129317.pdb -s /var/tmp/to_scwrl_1691129317.seq -o /var/tmp/from_scwrl_1691129317.pdb > /var/tmp/scwrl_1691129317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1691129317.pdb Number of alignments=988 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-local-adpstyle1.a2m # 2sas read from T0287-2sas-t2k-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :S 2sas 44 :G Number of specific fragments extracted= 5 number of extra gaps= 4 total=7050 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-local-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMS 2sas 79 :WEEYLAMWEKTIATCKS Number of specific fragments extracted= 7 number of extra gaps= 5 total=7057 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1598458123.pdb -s /var/tmp/to_scwrl_1598458123.seq -o /var/tmp/from_scwrl_1598458123.pdb > /var/tmp/scwrl_1598458123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1598458123.pdb Number of alignments=989 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 40 :IIDQIKTMHDFFKQMHTNK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLF 2sas 61 :EWRDLKGRADINKDDVV Number of specific fragments extracted= 7 number of extra gaps= 5 total=7064 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_797639621.pdb -s /var/tmp/to_scwrl_797639621.seq -o /var/tmp/from_scwrl_797639621.pdb > /var/tmp/scwrl_797639621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797639621.pdb Number of alignments=990 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 37 :K 2sas 6 :Q T0287 41 :IDQIKTMHDFFKQMHTNK 2sas 7 :KQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 6 total=7071 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2sas-t04-muscle.a2m.gz # 2sas read from T0287-2sas-t04-muscle.a2m.gz # found chain 2sas in template set Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I41 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 Warning: unaligning (T0287)N198 because last residue in template chain is (2sas)P185 T0287 1 :MSNNMRKLFSMIADSKD 2sas 6 :QKQKIKFTFDFFLDMNH T0287 29 :NE 2sas 23 :DG T0287 33 :NTDEKKK 2sas 27 :QDNDFED T0287 42 :DQI 2sas 36 :TRY T0287 47 :M 2sas 41 :V T0287 50 :FFKQMHTNKGA 2sas 44 :GSLSDADYKSM T0287 61 :LDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 2sas 62 :WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG T0287 134 :SIREMDS 2sas 123 :DLEEFQN T0287 143 :E 2sas 132 :K T0287 146 :GTNLPLLKLFVMTDEEVNFY 2sas 135 :QLQCADVPAVYNVITDGGKV T0287 170 :TIE 2sas 155 :TFD T0287 173 :Q 2sas 160 :R T0287 176 :DYVRDLLMKFDLEKYMKEKGVQ 2sas 163 :ELYYRLLTSPAADAGNTLMGQK Number of specific fragments extracted= 13 number of extra gaps= 8 total=7084 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_608310863.pdb -s /var/tmp/to_scwrl_608310863.seq -o /var/tmp/from_scwrl_608310863.pdb > /var/tmp/scwrl_608310863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_608310863.pdb Number of alignments=991 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2sas-t2k-muscle.a2m.gz # 2sas read from T0287-2sas-t2k-muscle.a2m.gz # found chain 2sas in template set Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I41 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSNNMRKLFSMIADSKD 2sas 6 :QKQKIKFTFDFFLDMNH T0287 29 :NE 2sas 23 :DG T0287 33 :NTDEKKK 2sas 27 :QDNDFED T0287 42 :DQI 2sas 36 :TRY T0287 46 :TMHDFFKQMHTN 2sas 47 :SDADYKSMQASL T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 2sas 61 :EWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG T0287 134 :SIREMDS 2sas 123 :DLEEFQN T0287 143 :E 2sas 132 :K T0287 146 :GTNLPLLKLFVMTDE 2sas 135 :QLQCADVPAVYNVIT T0287 166 :ANLKTIEQYND 2sas 150 :DGGKVTFDLNR T0287 179 :RDLLMKFDLEKYMKEKGVQNA 2sas 163 :ELYYRLLTSPAADAGNTLMGQ Number of specific fragments extracted= 11 number of extra gaps= 8 total=7095 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1205103908.pdb -s /var/tmp/to_scwrl_1205103908.seq -o /var/tmp/from_scwrl_1205103908.pdb > /var/tmp/scwrl_1205103908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1205103908.pdb Number of alignments=992 # command:# Prefix for input files set to 2trcP/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b9yC-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b9yC-T0287-fssp-global-adpstyle5.a2m # 2trcP read from 1b9yC-T0287-fssp-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)L26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 11 :MIADSKDKKE 2trcP 87 :EGCLRKYRRQ T0287 27 :QE 2trcP 103 :QK T0287 84 :FKKVYRLLESETMELLHAIAENPNFLFSKFDRS 2trcP 111 :YGFVYELETGEQFLETIEKEQKVTTIVVNIYED T0287 119 :GIFLPFF 2trcP 149 :DALNSSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFV 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYK T0287 158 :TDEEVN 2trcP 194 :GGELIS T0287 171 :IEQYND 2trcP 202 :ISVAEQ T0287 178 :VRDLLMKFDLEKYMKEKGVQN 2trcP 208 :FAEDFFAADVESFLNEYGLLP Number of specific fragments extracted= 8 number of extra gaps= 0 total=7103 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2072862992.pdb -s /var/tmp/to_scwrl_2072862992.seq -o /var/tmp/from_scwrl_2072862992.pdb > /var/tmp/scwrl_2072862992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2072862992.pdb Number of alignments=993 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b9yC-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b9yC-T0287-fssp-local-adpstyle5.a2m # 2trcP read from 1b9yC-T0287-fssp-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 58 :KGALDKVLRN 2trcP 87 :EGCLRKYRRQ T0287 74 :AVIKSIGV 2trcP 103 :QKLSFGPR T0287 84 :FKKVYRLLESETMELLHAIAENPNFLFSKFDRS 2trcP 111 :YGFVYELETGEQFLETIEKEQKVTTIVVNIYED T0287 119 :GIFLPFF 2trcP 149 :DALNSSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYAN 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISV Number of specific fragments extracted= 5 number of extra gaps= 0 total=7108 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_700973927.pdb -s /var/tmp/to_scwrl_700973927.seq -o /var/tmp/from_scwrl_700973927.pdb > /var/tmp/scwrl_700973927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_700973927.pdb Number of alignments=994 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t04-global-adpstyle1.a2m # 2trcP read from 2trcP-T0287-t04-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)D14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)I40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)D42 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)I76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 Warning: unaligning (T0287)V196 because last residue in template chain is (2trcP)R230 T0287 1 :MSNNMRKLF 2trcP 58 :SRDDKDSKE T0287 13 :A 2trcP 70 :R T0287 17 :DKKEKLIESLQENELLNTDEKKK 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 46 :TMHDFFKQMHTNKG 2trcP 119 :TGEQFLETIEKEQK T0287 60 :ALDKVLRNYMKDY 2trcP 150 :ALNSSLECLAAEY T0287 77 :KSIGVDK 2trcP 166 :KFCKIRA T0287 136 :REMD 2trcP 173 :SNTG T0287 141 :QIELYGTN 2trcP 177 :AGDRFSSD T0287 149 :LPLLKLF 2trcP 186 :LPTLLVY T0287 157 :MTDEEVNFYANLKTIEQ 2trcP 193 :KGGELISNFISVAEQFA T0287 175 :NDYVRDLLMKF 2trcP 210 :EDFFAADVESF T0287 187 :LEKYMKEKG 2trcP 221 :LNEYGLLPE Number of specific fragments extracted= 12 number of extra gaps= 0 total=7120 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_973863313.pdb -s /var/tmp/to_scwrl_973863313.seq -o /var/tmp/from_scwrl_973863313.pdb > /var/tmp/scwrl_973863313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973863313.pdb Number of alignments=995 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t04-global-adpstyle5.a2m # 2trcP read from 2trcP-T0287-t04-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 10 :SMIADSKDKKEKLIESL 2trcP 21 :GPKGVINDWRKFKLESE T0287 29 :NELLN 2trcP 40 :DSIPP T0287 36 :EKKKIIDQI 2trcP 45 :SKKEILRQM T0287 45 :KTM 2trcP 75 :QEY T0287 49 :DFFKQMHTNKGALDKVLRN 2trcP 78 :ELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 77 :KSIGVDK 2trcP 166 :KFCKIRA T0287 136 :REMD 2trcP 173 :SNTG T0287 141 :QIELYGT 2trcP 177 :AGDRFSS T0287 148 :NLPLLKLF 2trcP 185 :VLPTLLVY T0287 157 :MTDEEVNFYANLKTIEQ 2trcP 193 :KGGELISNFISVAEQFA T0287 175 :ND 2trcP 210 :ED T0287 182 :LMKFDLEKYMKEKGV 2trcP 212 :FFAADVESFLNEYGL Number of specific fragments extracted= 13 number of extra gaps= 1 total=7133 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1249827407.pdb -s /var/tmp/to_scwrl_1249827407.seq -o /var/tmp/from_scwrl_1249827407.pdb > /var/tmp/scwrl_1249827407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1249827407.pdb Number of alignments=996 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t04-local-adpstyle1.a2m # 2trcP read from 2trcP-T0287-t04-local-adpstyle1.a2m # found chain 2trcP in template set T0287 147 :TNLPLLKLF 2trcP 184 :DVLPTLLVY T0287 157 :MTDEEVNFYANLKT 2trcP 193 :KGGELISNFISVAE T0287 171 :IEQYNDYVRDLLM 2trcP 214 :AADVESFLNEYGL Number of specific fragments extracted= 3 number of extra gaps= 0 total=7136 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1029495803.pdb -s /var/tmp/to_scwrl_1029495803.seq -o /var/tmp/from_scwrl_1029495803.pdb > /var/tmp/scwrl_1029495803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1029495803.pdb Number of alignments=997 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t04-local-adpstyle5.a2m # 2trcP read from 2trcP-T0287-t04-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)I76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 49 :DFFKQMHTNKGALDKVLRN 2trcP 78 :ELIHQDKEDEGCLRKYRRQ T0287 77 :KSIGVDKF 2trcP 103 :QKLSFGPR T0287 85 :KKVYRLLESE 2trcP 112 :GFVYELETGE T0287 97 :ELLHAIAEN 2trcP 122 :QFLETIEKE T0287 109 :LFSKFDR 2trcP 166 :KFCKIRA T0287 136 :REMD 2trcP 173 :SNTG T0287 141 :QIELYGT 2trcP 177 :AGDRFSS T0287 148 :NLPLLKLF 2trcP 185 :VLPTLLVY T0287 157 :MTDEEVNFYANLKT 2trcP 193 :KGGELISNFISVAE T0287 171 :IEQYNDYVRDLL 2trcP 214 :AADVESFLNEYG Number of specific fragments extracted= 10 number of extra gaps= 0 total=7146 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_438352912.pdb -s /var/tmp/to_scwrl_438352912.seq -o /var/tmp/from_scwrl_438352912.pdb > /var/tmp/scwrl_438352912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_438352912.pdb Number of alignments=998 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t2k-global-adpstyle1.a2m # 2trcP read from 2trcP-T0287-t2k-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)M11 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLF 2trcP 29 :WRKFKLESE T0287 12 :IADSKDKKEKLIESLQENELLNTDEKK 2trcP 40 :DSIPPSKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 43 :QIKTMHDFFKQMHTNKG 2trcP 116 :ELETGEQFLETIEKEQK T0287 94 :ETMELLHAIA 2trcP 133 :VTTIVVNIYE T0287 106 :PNFLFSKFDRSILGIFLPFF 2trcP 143 :DGVRGCDALNSSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFA T0287 180 :DLLMKFDLEKYMKEKGVQNA 2trcP 210 :EDFFAADVESFLNEYGLLPE Number of specific fragments extracted= 8 number of extra gaps= 1 total=7154 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_455777108.pdb -s /var/tmp/to_scwrl_455777108.seq -o /var/tmp/from_scwrl_455777108.pdb > /var/tmp/scwrl_455777108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_455777108.pdb Number of alignments=999 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t2k-global-adpstyle5.a2m # 2trcP read from 2trcP-T0287-t2k-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)M11 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLF 2trcP 29 :WRKFKLESE T0287 12 :IADSKDKKEKLIESLQENELLNTDEKK 2trcP 40 :DSIPPSKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :T 2trcP 74 :I T0287 47 :MHDFFKQMHTNKGALDKVLRN 2trcP 76 :EYELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 80 :GVDKFKKVYRLLESETMELLHAIA 2trcP 119 :TGEQFLETIEKEQKVTTIVVNIYE T0287 106 :PNFLFSKFDRSILGIFLPFF 2trcP 143 :DGVRGCDALNSSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVM 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKG T0287 159 :DEEVNFYANLKT 2trcP 195 :GELISNFISVAE T0287 171 :IE 2trcP 208 :FA T0287 180 :DLLMKFDLEKYMKEKGVQNA 2trcP 210 :EDFFAADVESFLNEYGLLPE Number of specific fragments extracted= 12 number of extra gaps= 1 total=7166 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1054048872.pdb -s /var/tmp/to_scwrl_1054048872.seq -o /var/tmp/from_scwrl_1054048872.pdb > /var/tmp/scwrl_1054048872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1054048872.pdb Number of alignments=1000 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t2k-local-adpstyle1.a2m # 2trcP read from 2trcP-T0287-t2k-local-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)I76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 60 :ALDKVLRNYMKDY 2trcP 150 :ALNSSLECLAAEY T0287 77 :KSIGVD 2trcP 166 :KFCKIR Number of specific fragments extracted= 2 number of extra gaps= 0 total=7168 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1246650962.pdb -s /var/tmp/to_scwrl_1246650962.seq -o /var/tmp/from_scwrl_1246650962.pdb > /var/tmp/scwrl_1246650962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246650962.pdb Number of alignments=1001 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t2k-local-adpstyle5.a2m # 2trcP read from 2trcP-T0287-t2k-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 T0287 43 :QIKTMHDFFKQMHTNKG 2trcP 116 :ELETGEQFLETIEKEQK T0287 60 :ALDKVLRNYMKDY 2trcP 150 :ALNSSLECLAAEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=7170 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1736307199.pdb -s /var/tmp/to_scwrl_1736307199.seq -o /var/tmp/from_scwrl_1736307199.pdb > /var/tmp/scwrl_1736307199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1736307199.pdb Number of alignments=1002 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-simplesw-adpstyle1.a2m # 2trcP read from T0287-2trcP-simplesw-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7171 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1148393805.pdb -s /var/tmp/to_scwrl_1148393805.seq -o /var/tmp/from_scwrl_1148393805.pdb > /var/tmp/scwrl_1148393805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1148393805.pdb Number of alignments=1003 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-simplesw-adpstyle5.a2m # 2trcP read from T0287-2trcP-simplesw-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL Number of specific fragments extracted= 5 number of extra gaps= 0 total=7176 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1000702865.pdb -s /var/tmp/to_scwrl_1000702865.seq -o /var/tmp/from_scwrl_1000702865.pdb > /var/tmp/scwrl_1000702865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1000702865.pdb Number of alignments=1004 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-global-adpstyle1.a2m # 2trcP read from T0287-2trcP-t04-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)M130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKLFSMIA 2trcP 27 :NDWRKFKLESE T0287 16 :K 2trcP 40 :D T0287 17 :DKKEKLIESLQENELLNTDEKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TM 2trcP 74 :IQ T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 81 :VDKFKKVYRLLESET 2trcP 108 :GPRYGFVYELETGEQ T0287 96 :MELLHAIAENPNFLFSKFDRSILG 2trcP 124 :LETIEKEQKVTTIVVNIYEDGVRG T0287 120 :IFLPFFSK 2trcP 155 :LECLAAEY T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEV 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKG 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYG T0287 196 :VQNA 2trcP 227 :LPER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7190 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1222419888.pdb -s /var/tmp/to_scwrl_1222419888.seq -o /var/tmp/from_scwrl_1222419888.pdb > /var/tmp/scwrl_1222419888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1222419888.pdb Number of alignments=1005 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-global-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)L152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKL 2trcP 27 :NDWRKF T0287 9 :FSM 2trcP 35 :ESE T0287 14 :DSKD 2trcP 40 :DSIP T0287 18 :KKEKLIESLQENELLNTDEKK 2trcP 46 :KKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TMHDFFKQMHTNKGALDKVLRN 2trcP 75 :QEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLESETM 2trcP 109 :PRYGFVYELETGEQF T0287 99 :LHAIAEN 2trcP 124 :LETIEKE T0287 115 :RSILGIFLPFFSKPI 2trcP 131 :QKVTTIVVNIYEDGV T0287 133 :MSIREMDSQIELYGTNL 2trcP 146 :RGCDALNSSLECLAAEY T0287 153 :KLFVMTDEEVN 2trcP 166 :KFCKIRASNTG T0287 164 :FYANLKTIEQY 2trcP 191 :VYKGGELISNF T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQ 2trcP 205 :AEQFAEDFFAADVESFLNEYGLL T0287 198 :NA 2trcP 229 :ER Number of specific fragments extracted= 17 number of extra gaps= 1 total=7207 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1875537212.pdb -s /var/tmp/to_scwrl_1875537212.seq -o /var/tmp/from_scwrl_1875537212.pdb > /var/tmp/scwrl_1875537212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1875537212.pdb Number of alignments=1006 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)I40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSN 2trcP 14 :EGQ T0287 4 :NMRKLFSMIA 2trcP 28 :DWRKFKLESE T0287 16 :KD 2trcP 40 :DS T0287 18 :KKEKLIESLQENELLNTDEKKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV T0287 109 :LFSKFDR 2trcP 140 :IYEDGVR T0287 116 :SILGIFLPFF 2trcP 153 :SSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANL 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVA T0287 172 :EQYND 2trcP 206 :EQFAE T0287 182 :LMKFDLEKYMKEKGV 2trcP 212 :FFAADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7221 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_587063669.pdb -s /var/tmp/to_scwrl_587063669.seq -o /var/tmp/from_scwrl_587063669.pdb > /var/tmp/scwrl_587063669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_587063669.pdb Number of alignments=1007 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNM 2trcP 14 :EGQAT T0287 16 :KDKKEKLIESLQENEL 2trcP 19 :HTGPKGVINDWRKFKL T0287 33 :NTDEKK 2trcP 61 :DKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 13 number of extra gaps= 0 total=7234 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1443744480.pdb -s /var/tmp/to_scwrl_1443744480.seq -o /var/tmp/from_scwrl_1443744480.pdb > /var/tmp/scwrl_1443744480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1443744480.pdb Number of alignments=1008 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-local-adpstyle1.a2m # 2trcP read from T0287-2trcP-t04-local-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7235 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_79975415.pdb -s /var/tmp/to_scwrl_79975415.seq -o /var/tmp/from_scwrl_79975415.pdb > /var/tmp/scwrl_79975415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_79975415.pdb Number of alignments=1009 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-local-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLES 2trcP 109 :PRYGFVYELETG Number of specific fragments extracted= 7 number of extra gaps= 0 total=7242 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1047960652.pdb -s /var/tmp/to_scwrl_1047960652.seq -o /var/tmp/from_scwrl_1047960652.pdb > /var/tmp/scwrl_1047960652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1047960652.pdb Number of alignments=1010 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=7249 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1850510004.pdb -s /var/tmp/to_scwrl_1850510004.seq -o /var/tmp/from_scwrl_1850510004.pdb > /var/tmp/scwrl_1850510004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1850510004.pdb Number of alignments=1011 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 47 :MHDFFKQMHTNKGALDKVLRN 2trcP 76 :EYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL Number of specific fragments extracted= 9 number of extra gaps= 0 total=7258 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1463823787.pdb -s /var/tmp/to_scwrl_1463823787.seq -o /var/tmp/from_scwrl_1463823787.pdb > /var/tmp/scwrl_1463823787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463823787.pdb Number of alignments=1012 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-global-adpstyle1.a2m # 2trcP read from T0287-2trcP-t06-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)M130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKLFSMIA 2trcP 27 :NDWRKFKLESE T0287 16 :K 2trcP 40 :D T0287 17 :DKKEKLIESLQENELLNTDEKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TM 2trcP 74 :IQ T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 81 :VDKFKKVYRLLESET 2trcP 108 :GPRYGFVYELETGEQ T0287 96 :MELLHAIAENPNFLFSKFDRSILG 2trcP 124 :LETIEKEQKVTTIVVNIYEDGVRG T0287 120 :IFLPFFSK 2trcP 155 :LECLAAEY T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEV 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKG 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYG T0287 196 :VQNA 2trcP 227 :LPER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7272 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1814128883.pdb -s /var/tmp/to_scwrl_1814128883.seq -o /var/tmp/from_scwrl_1814128883.pdb > /var/tmp/scwrl_1814128883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1814128883.pdb Number of alignments=1013 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-global-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)L152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKL 2trcP 27 :NDWRKF T0287 9 :FSM 2trcP 35 :ESE T0287 14 :DSKD 2trcP 40 :DSIP T0287 18 :KKEKLIESLQENELLNTDEKK 2trcP 46 :KKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TMHDFFKQMHTNKGALDKVLRN 2trcP 75 :QEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLESETM 2trcP 109 :PRYGFVYELETGEQF T0287 99 :LHAIAEN 2trcP 124 :LETIEKE T0287 115 :RSILGIFLPFFSKPI 2trcP 131 :QKVTTIVVNIYEDGV T0287 133 :MSIREMDSQIELYGTNL 2trcP 146 :RGCDALNSSLECLAAEY T0287 153 :KLFVMTDEEVN 2trcP 166 :KFCKIRASNTG T0287 164 :FYANLKTIEQY 2trcP 191 :VYKGGELISNF T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQ 2trcP 205 :AEQFAEDFFAADVESFLNEYGLL T0287 198 :NA 2trcP 229 :ER Number of specific fragments extracted= 17 number of extra gaps= 1 total=7289 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1171265541.pdb -s /var/tmp/to_scwrl_1171265541.seq -o /var/tmp/from_scwrl_1171265541.pdb > /var/tmp/scwrl_1171265541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1171265541.pdb Number of alignments=1014 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)I40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSN 2trcP 14 :EGQ T0287 4 :NMRKLFSMIA 2trcP 28 :DWRKFKLESE T0287 16 :KD 2trcP 40 :DS T0287 18 :KKEKLIESLQENELLNTDEKKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV T0287 109 :LFSKFDR 2trcP 140 :IYEDGVR T0287 116 :SILGIFLPFF 2trcP 153 :SSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANL 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVA T0287 172 :EQYND 2trcP 206 :EQFAE T0287 182 :LMKFDLEKYMKEKGV 2trcP 212 :FFAADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7303 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1782864906.pdb -s /var/tmp/to_scwrl_1782864906.seq -o /var/tmp/from_scwrl_1782864906.pdb > /var/tmp/scwrl_1782864906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782864906.pdb Number of alignments=1015 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNM 2trcP 14 :EGQAT T0287 16 :KDKKEKLIESLQENEL 2trcP 19 :HTGPKGVINDWRKFKL T0287 33 :NTDEKK 2trcP 61 :DKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 13 number of extra gaps= 0 total=7316 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_106131362.pdb -s /var/tmp/to_scwrl_106131362.seq -o /var/tmp/from_scwrl_106131362.pdb > /var/tmp/scwrl_106131362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_106131362.pdb Number of alignments=1016 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-local-adpstyle1.a2m # 2trcP read from T0287-2trcP-t06-local-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7317 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_165037464.pdb -s /var/tmp/to_scwrl_165037464.seq -o /var/tmp/from_scwrl_165037464.pdb > /var/tmp/scwrl_165037464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_165037464.pdb Number of alignments=1017 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-local-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLES 2trcP 109 :PRYGFVYELETG Number of specific fragments extracted= 7 number of extra gaps= 0 total=7324 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1910088689.pdb -s /var/tmp/to_scwrl_1910088689.seq -o /var/tmp/from_scwrl_1910088689.pdb > /var/tmp/scwrl_1910088689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1910088689.pdb Number of alignments=1018 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=7331 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1797260680.pdb -s /var/tmp/to_scwrl_1797260680.seq -o /var/tmp/from_scwrl_1797260680.pdb > /var/tmp/scwrl_1797260680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1797260680.pdb Number of alignments=1019 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 47 :MHDFFKQMHTNKGALDKVLRN 2trcP 76 :EYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL Number of specific fragments extracted= 9 number of extra gaps= 0 total=7340 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1763495588.pdb -s /var/tmp/to_scwrl_1763495588.seq -o /var/tmp/from_scwrl_1763495588.pdb > /var/tmp/scwrl_1763495588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1763495588.pdb Number of alignments=1020 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-global-adpstyle1.a2m # 2trcP read from T0287-2trcP-t2k-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)M130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKLFSMIA 2trcP 27 :NDWRKFKLESE T0287 16 :K 2trcP 40 :D T0287 17 :DKKEKLIESLQENELLNTDEKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TM 2trcP 74 :IQ T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 81 :VDKFKKVYRLLESET 2trcP 108 :GPRYGFVYELETGEQ T0287 96 :MELLHAIAENPNFLFSKFDRSILG 2trcP 124 :LETIEKEQKVTTIVVNIYEDGVRG T0287 120 :IFLPFFSK 2trcP 155 :LECLAAEY T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEV 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKG 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYG T0287 196 :VQNA 2trcP 227 :LPER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7354 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_560244663.pdb -s /var/tmp/to_scwrl_560244663.seq -o /var/tmp/from_scwrl_560244663.pdb > /var/tmp/scwrl_560244663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_560244663.pdb Number of alignments=1021 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-global-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)L152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKL 2trcP 27 :NDWRKF T0287 9 :FSM 2trcP 35 :ESE T0287 14 :DSKD 2trcP 40 :DSIP T0287 18 :KKEKLIESLQENELLNTDEKK 2trcP 46 :KKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TMHDFFKQMHTNKGALDKVLRN 2trcP 75 :QEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLESETM 2trcP 109 :PRYGFVYELETGEQF T0287 99 :LHAIAEN 2trcP 124 :LETIEKE T0287 115 :RSILGIFLPFFSKPI 2trcP 131 :QKVTTIVVNIYEDGV T0287 133 :MSIREMDSQIELYGTNL 2trcP 146 :RGCDALNSSLECLAAEY T0287 153 :KLFVMTDEEVN 2trcP 166 :KFCKIRASNTG T0287 164 :FYANLKTIEQY 2trcP 191 :VYKGGELISNF T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQ 2trcP 205 :AEQFAEDFFAADVESFLNEYGLL T0287 198 :NA 2trcP 229 :ER Number of specific fragments extracted= 17 number of extra gaps= 1 total=7371 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_258087896.pdb -s /var/tmp/to_scwrl_258087896.seq -o /var/tmp/from_scwrl_258087896.pdb > /var/tmp/scwrl_258087896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_258087896.pdb Number of alignments=1022 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLFSMIAD 2trcP 14 :EGQATHTGPKGVIN T0287 17 :DKKEKLIESL 2trcP 28 :DWRKFKLESE T0287 29 :N 2trcP 40 :D T0287 30 :ELL 2trcP 48 :EIL T0287 33 :NTDEKKK 2trcP 60 :DDKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV T0287 109 :LFSKFDR 2trcP 140 :IYEDGVR T0287 116 :SILGIFLPFF 2trcP 153 :SSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPL 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPT T0287 154 :LFVMTDEEV 2trcP 189 :LLVYKGGEL T0287 163 :NFYAN 2trcP 200 :NFISV T0287 171 :IEQYND 2trcP 205 :AEQFAE T0287 182 :LMKFDLEKYMKEKGV 2trcP 212 :FFAADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 17 number of extra gaps= 1 total=7388 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_821115850.pdb -s /var/tmp/to_scwrl_821115850.seq -o /var/tmp/from_scwrl_821115850.pdb > /var/tmp/scwrl_821115850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821115850.pdb Number of alignments=1023 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNM 2trcP 14 :EGQAT T0287 16 :KDKKEKLIESLQENEL 2trcP 19 :HTGPKGVINDWRKFKL T0287 33 :NTDEKK 2trcP 61 :DKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 13 number of extra gaps= 0 total=7401 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_485624009.pdb -s /var/tmp/to_scwrl_485624009.seq -o /var/tmp/from_scwrl_485624009.pdb > /var/tmp/scwrl_485624009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_485624009.pdb Number of alignments=1024 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-local-adpstyle1.a2m # 2trcP read from T0287-2trcP-t2k-local-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7402 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_959061823.pdb -s /var/tmp/to_scwrl_959061823.seq -o /var/tmp/from_scwrl_959061823.pdb > /var/tmp/scwrl_959061823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_959061823.pdb Number of alignments=1025 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-local-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLES 2trcP 109 :PRYGFVYELETG Number of specific fragments extracted= 7 number of extra gaps= 0 total=7409 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1794979162.pdb -s /var/tmp/to_scwrl_1794979162.seq -o /var/tmp/from_scwrl_1794979162.pdb > /var/tmp/scwrl_1794979162.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794979162.pdb Number of alignments=1026 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=7416 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1735451416.pdb -s /var/tmp/to_scwrl_1735451416.seq -o /var/tmp/from_scwrl_1735451416.pdb > /var/tmp/scwrl_1735451416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1735451416.pdb Number of alignments=1027 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 47 :MHDFFKQMHTNKGALDKVLRN 2trcP 76 :EYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL Number of specific fragments extracted= 9 number of extra gaps= 0 total=7425 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1988557626.pdb -s /var/tmp/to_scwrl_1988557626.seq -o /var/tmp/from_scwrl_1988557626.pdb > /var/tmp/scwrl_1988557626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1988557626.pdb Number of alignments=1028 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2trcP-t04-muscle.a2m.gz # 2trcP read from T0287-2trcP-t04-muscle.a2m.gz # found chain 2trcP in template set Warning: unaligning (T0287)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)E30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)L32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)T34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)A60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)L61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)K63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 2trcP 40 :DSIPPSKKEILRQMSSPQSRDDKDSKE T0287 31 :L 2trcP 70 :R T0287 35 :DEKKKIIDQIKTMHDFFKQMHTN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2trcP 103 :QKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYE T0287 106 :PNFLFSKFDRSILGIFLPFF 2trcP 143 :DGVRGCDALNSSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYGLLPE Number of specific fragments extracted= 7 number of extra gaps= 0 total=7432 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_85848427.pdb -s /var/tmp/to_scwrl_85848427.seq -o /var/tmp/from_scwrl_85848427.pdb > /var/tmp/scwrl_85848427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_85848427.pdb Number of alignments=1029 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-muscle.a2m.gz # 2trcP read from T0287-2trcP-t2k-muscle.a2m.gz # found chain 2trcP in template set Warning: unaligning (T0287)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)E30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)L32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)T34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)A60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)L61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)K63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 2trcP 40 :DSIPPSKKEILRQMSSPQSRDDKDSKE T0287 31 :L 2trcP 70 :R T0287 35 :DEKKKIIDQIKTMHDFFKQMHTN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2trcP 103 :QKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYE T0287 106 :PNFLFSKFDRSILGIFLPFF 2trcP 143 :DGVRGCDALNSSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYGLLPE Number of specific fragments extracted= 7 number of extra gaps= 0 total=7439 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_43744877.pdb -s /var/tmp/to_scwrl_43744877.seq -o /var/tmp/from_scwrl_43744877.pdb > /var/tmp/scwrl_43744877.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43744877.pdb Number of alignments=1030 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1030 alignments, # shrinking each end by up to 0*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1031: T0287+T0287-2cunA-t2k-global-adpstyle1.a2m:2cunA at pool[285] 243.87 cost/residue, 238 clashes 0.481851 breaks # command:# naming current conformation T0287.try7-al1 # command:# Prefix for input files set to # command:CPU_time= 187.203 sec, elapsed time= 1153.42 sec) # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1030 alignments, # shrinking each end by up to 0*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1031: T0287.try7-al1+T0287-1josA-t04-local-adpstyle5.a2m:1josA at pool[3] 238.9 cost/residue, 226 clashes 0.263858 breaks # command:# naming current conformation T0287.try7-al3 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1030 alignments, # shrinking each end by up to 0.2*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1031: T0287.try7-al3+T0287-1josA-t2k-local-adpstyle5.a2m:1josA at pool[89] 238.898 cost/residue, 226 clashes 0.263858 breaks # command:# naming current conformation T0287.try7-al4 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1030 alignments, # shrinking each end by up to 0.3*length and merging fragments shorter than 1 # Each alignment is added to result of previous insertion # best score in alignment pool out of 1031: T0287.try7-al4 238.898 cost/residue, 226 clashes 0.263858 breaks # command:# naming current conformation T0287.try7-al5 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1030 alignments, # shrinking each end by up to 0.4*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1031: T0287.try7-al5+T0287-1josA-simplesw-adpstyle5.a2m:1josA at pool[109] 238.898 cost/residue, 226 clashes 0.263858 breaks # command:# naming current conformation T0287.try7-al6 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1030 alignments, # shrinking each end by up to 0.5*length and merging fragments shorter than 1 # Each alignment is added to result of previous insertion # best score in alignment pool out of 1031: T0287.try7-al6 238.898 cost/residue, 226 clashes 0.263858 breaks # command:# naming current conformation T0287.try7-al7 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1030 alignments, # shrinking each end by up to 0*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1031: T0287.try7-al7 238.898 cost/residue, 226 clashes 0.263858 breaks # command:# naming current conformation T0287.try7-al8 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1428464658.pdb -s /var/tmp/to_scwrl_1428464658.seq -o /var/tmp/from_scwrl_1428464658.pdb > /var/tmp/scwrl_1428464658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1428464658.pdb # conformation set from SCWRL output # command:# naming current conformation T0287.try7 # command:# CostConform T0287.try7 costs 239.197 T0287.try7-al8 costs 238.898 T0287.try7-al7 costs 238.898 T0287.try7-al6 costs 238.898 T0287.try7-al5 costs 238.898 T0287.try7-al4 costs 238.898 T0287.try7-al3 costs 238.9 T0287.try7-al1 costs 243.87 T0287 costs 422.369 # command:CPU_time= 484.033 sec, elapsed time= 1745.25 sec) # command:# Prefix for input files set to # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0287.t2k.many.frag with CODEWEIGHT bystroff filtering # T0287 read from T0287.t2k.many.frag # 1e9rA.1.164 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)M1 (1e9rA)G235 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1e9rA 236 :TPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 1 total=7440 # 1wu7A.1.175 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)M1 (1wu7A)T176 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1wu7A 177 :SSDPFSVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=7441 # 1xsvA.1.25 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 1 :MSNNMRKLF 1xsvA 23 :LTNKQRNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7442 # 1zpyA.1.12 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 1 :MSN 1zpyA 13 :LSD T0287 6 :RKLF 1zpyA 18 :RDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=7444 # 1efyA.1.3 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 1 :MSNNMRKLF 1efyA 665 :LAKPIQDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7445 # 1u61A.1.37 read from T0287.t2k.many.frag # found chain 1u61A in template set T0287 1 :MSNNMRKLF 1u61A 35 :RPNQLHRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7446 # 2b06A.1.120 read from T0287.t2k.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 1 :MSN 2b06A 121 :LAY T0287 5 :MRKLF 2b06A 125 :MLPLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=7448 # 2czsA.1.12 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)M5 (2czsA)H39 because G (3-10) conformation "forbidden" or filtered. T0287 1 :MSNN 2czsA 35 :LDTN T0287 6 :RKLF 2czsA 40 :KRFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=7450 # 1z7xW.1.211 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 1 :MSNNMRKLF 1z7xW 211 :TSDNCRDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=7451 # 1v96A.1.17 read from T0287.t2k.many.frag # found chain 1v96A in template set T0287 1 :MSNNMRKLF 1v96A 18 :HSQNMKRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7452 # 1p0yA.1.306 read from T0287.t2k.many.frag # found chain 1p0yA in template set T0287 1 :MSNNMRKLF 1p0yA 351 :LPPGLLPYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7453 # 1qg8A.1.11 read from T0287.t2k.many.frag # found chain 1qg8A in training set T0287 1 :MSNNMRKLF 1qg8A 13 :KSDYVAKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7454 # 1j93A.1.165 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 1 :MSNNMRKLF 1j93A 165 :SSKNFTKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7455 # 2f22A.1.32 read from T0287.t2k.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)N4 (2f22A)T35 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :MSN 2f22A 32 :ELG T0287 5 :MRKLF 2f22A 36 :LRKLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=7457 # 1yvrA.1.143 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 1 :MSNNMRKLF 1yvrA 144 :WGRALRKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7458 # 1ah7.1.190 read from T0287.t2k.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 1ah7 191 :V T0287 3 :NNMRKLF 1ah7 193 :DNTKDWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=7460 # 1x91A.1.29 read from T0287.t2k.many.frag # found chain 1x91A in training set T0287 1 :MSNNMRKLF 1x91A 26 :ASANLQALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7461 # 2b0tA.1.59 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 1 :MSNNMRKLF 2b0tA 60 :VGNALAELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7462 # 1pu6A.1.60 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 1 :MSNNMRKLF 1pu6A 61 :LENDDEINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7463 # 1ua4A.1.237 read from T0287.t2k.many.frag # found chain 1ua4A in template set T0287 1 :MSNNMRKLF 1ua4A 238 :TKENYKEPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7464 # 1yd0A.1.0 read from T0287.t2k.many.frag # found chain 1yd0A in training set T0287 1 :MSNNMRKLF 1yd0A 1 :MKEKIRKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7465 # 1qhlA.1.166 read from T0287.t2k.many.frag # found chain 1qhlA in template set T0287 1 :MSNNMRKLF 1qhlA 167 :QFNSITDYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=7466 # 1jfzA.1.0 read from T0287.t2k.many.frag # found chain 1jfzA in template set T0287 1 :MSNNMRKLF 1jfzA 0 :GMKMLEQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7467 # 1ldjA.1.298 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 T0287 1 :MSNNMRKL 1ldjA 315 :KNEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=7468 # 2bg5A.1.276 read from T0287.t2k.many.frag # found chain 2bg5A in template set T0287 1 :MSNNMRKLF 2bg5A 526 :SATSIPEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7469 # 1utcA.1.329 read from T0287.t2k.many.frag # found chain 1utcA in template set T0287 1 :MSNNMRKLF 1utcA 330 :EEENIIPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7470 # 1qgiA.1.181 read from T0287.t2k.many.frag # found chain 1qgiA in training set Warning: unaligning (T0287)N4 (1qgiA)T185 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :MSN 1qgiA 182 :GSD T0287 5 :MRKLF 1qgiA 186 :LQGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7472 # 1fm0D.1.23 read from T0287.t2k.many.frag # found chain 1fm0D in training set T0287 1 :MSNNMRKLF 1fm0D 24 :DFPTVEALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7473 # 2b6cA.1.120 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)L119 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLF 2b6cA 120 :TELPTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=7474 # 1m5wA.1.111 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 1 :MSNNMRKLF 1m5wA 112 :QRDKMRDAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=7475 # 1wu7A.2.176 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 2 :SNNMRKLFS 1wu7A 177 :SSDPFSVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7476 # 1xsvA.2.26 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 2 :SNNMRKLFS 1xsvA 24 :TNKQRNYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7477 # 1efyA.2.4 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 2 :SNNMRKLFS 1efyA 666 :AKPIQDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7478 # 1e9rA.2.165 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 2 :SNNMRKLFS 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=7479 # 2czsA.2.13 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S2 (2czsA)D36 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 2czsA 37 :TNHKRFYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=7480 # 1zpyA.2.13 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 2 :SN 1zpyA 14 :SD T0287 6 :RKLFS 1zpyA 18 :RDMHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=7482 # 1ah7.2.191 read from T0287.t2k.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 1ah7 193 :DNTKDWFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=7483 # 2f22A.2.33 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 2 :SNNMRKLFS 2f22A 33 :LGTLRKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7484 # 1qg8A.2.12 read from T0287.t2k.many.frag # found chain 1qg8A in training set T0287 2 :SNNMRKLFS 1qg8A 14 :SDYVAKSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7485 # 2b06A.2.121 read from T0287.t2k.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :SN 2b06A 122 :AY T0287 5 :MRKLFS 2b06A 125 :MLPLME Number of specific fragments extracted= 2 number of extra gaps= 1 total=7487 # 1j93A.2.166 read from T0287.t2k.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 2 :SNN 1j93A 166 :SKN T0287 6 :RKLFS 1j93A 170 :TKIKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=7489 # 1z7xW.2.212 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 2 :SNNMRKLFS 1z7xW 212 :SDNCRDLCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7490 # 1ldjA.2.299 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 2 :SNNMRKL 1ldjA 316 :NEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=7491 # 1yvrA.2.144 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 2 :SNNMRKLFS 1yvrA 145 :GRALRKAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7492 # 1ua4A.2.238 read from T0287.t2k.many.frag # found chain 1ua4A in template set T0287 2 :SNNMRKLFS 1ua4A 239 :KENYKEPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7493 # 1m5wA.2.112 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 2 :SNNMRKLFS 1m5wA 113 :RDKMRDACK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7494 # 1wb9A.2.429 read from T0287.t2k.many.frag # found chain 1wb9A in template set T0287 2 :SNNMRKLFS 1wb9A 430 :NEELDEWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7495 # 1u61A.2.38 read from T0287.t2k.many.frag # found chain 1u61A in template set T0287 2 :SNNMRKLFS 1u61A 36 :PNQLHRLGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7496 # 1dozA.2.17 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 2 :SNNMRKLFS 1dozA 19 :EEDIERYYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7497 # 2b6cA.2.121 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLFS 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=7498 # 1v96A.2.18 read from T0287.t2k.many.frag # found chain 1v96A in template set T0287 2 :SNNMRKLFS 1v96A 19 :SQNMKRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7499 # 1yd0A.2.1 read from T0287.t2k.many.frag # found chain 1yd0A in training set T0287 2 :SNNMRKLFS 1yd0A 2 :KEKIRKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7500 # 1xfiA.2.38 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 2 :SNNMRKLFS 1xfiA 39 :TPNEISWIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7501 # 1pu6A.2.61 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 1pu6A 63 :NDDEINLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=7502 # 3thiA.2.120 read from T0287.t2k.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)N4 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SN 3thiA 129 :VD T0287 5 :MRKLFS 3thiA 132 :IYELYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=7504 # 1p0yA.2.307 read from T0287.t2k.many.frag # found chain 1p0yA in template set Warning: unaligning (T0287)N4 (1p0yA)G354 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :SN 1p0yA 352 :PP T0287 5 :MRKLFS 1p0yA 355 :LLPYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=7506 # 1z0wA.2.174 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SN 1z0wA 589 :VS T0287 5 :MRKLFS 1z0wA 592 :INEVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=7508 # 2ahrA.2.154 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 2 :SNNMRKLFS 2ahrA 152 :EKDFDTFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7509 # 1hw1A.2.120 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 2 :SNNMRKLFS 1hw1A 121 :PDKAQEVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7510 # 2b0tA.2.60 read from T0287.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)S2 (2b0tA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N3 (2b0tA)N62 because D (zeta) conformation "forbidden" or filtered. T0287 4 :NMRKLFS 2b0tA 63 :ALAELGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=7511 # 1wu7A.3.177 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 3 :NNMRKLFSM 1wu7A 178 :SDPFSVFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7512 # 1efyA.3.5 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 3 :NNMRKLFSM 1efyA 667 :KPIQDLIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=7513 # 1xsvA.3.27 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 3 :NNMRKLFSM 1xsvA 25 :NKQRNYLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7514 # 1zpyA.3.14 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 3 :N 1zpyA 15 :D T0287 6 :RKLFSM 1zpyA 18 :RDMHRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=7516 # 1ah7.3.192 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 3 :NNMRKLFSM 1ah7 193 :DNTKDWFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7517 # 2czsA.3.14 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 3 :NNMRKLFSM 2czsA 37 :TNHKRFYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7518 # 1e9rA.3.166 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 3 :NNMRKLFSM 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=7519 # 2f22A.3.34 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 3 :NNMRKLFSM 2f22A 34 :GTLRKLFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=7520 # 2b6cA.3.122 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 3 :NNMRKLFSM 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7521 # 1m5wA.3.113 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 3 :NNMRKLFSM 1m5wA 114 :DKMRDACKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7522 # 1ldjA.3.300 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 3 :NNMRKL 1ldjA 317 :EDLGRM T0287 11 :M 1ldjA 325 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=7524 # 1dozA.3.18 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 3 :NNMRKLFSM 1dozA 20 :EDIERYYTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=7525 # 2b06A.3.122 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 3 :NNMRKLFSM 2b06A 123 :YDMLPLMEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=7526 # 1wb9A.3.430 read from T0287.t2k.many.frag # found chain 1wb9A in template set T0287 3 :NNMRKLFSM 1wb9A 431 :EELDEWRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7527 # 1z7xW.3.213 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 3 :NNMRKLFSM 1z7xW 213 :DNCRDLCGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7528 # 1j93A.3.167 read from T0287.t2k.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 3 :NN 1j93A 167 :KN T0287 6 :RKLFSM 1j93A 170 :TKIKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7530 # 1qg8A.3.13 read from T0287.t2k.many.frag # found chain 1qg8A in training set T0287 3 :NNMRKLFSM 1qg8A 15 :DYVAKSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7531 # 3thiA.3.121 read from T0287.t2k.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)N4 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :N 3thiA 130 :D T0287 5 :MRKLFSM 3thiA 132 :IYELYKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=7533 # 1ee4A.3.296 read from T0287.t2k.many.frag # found chain 1ee4A in template set Warning: unaligning (T0287)N3 (1ee4A)N383 because L (left) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 1ee4A 384 :LIPPLVKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=7534 # 1yvrA.3.145 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 3 :NNMRKLFSM 1yvrA 146 :RALRKAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7535 # 1ua4A.3.239 read from T0287.t2k.many.frag # found chain 1ua4A in template set T0287 3 :NNMRKLFSM 1ua4A 240 :ENYKEPFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7536 # 1xfiA.3.39 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 3 :NNMRKLFSM 1xfiA 40 :PNEISWINV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7537 # 1b25A.3.502 read from T0287.t2k.many.frag # found chain 1b25A in template set T0287 3 :NNMRKLFSM 1b25A 503 :DYYPKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7538 # 1u61A.3.39 read from T0287.t2k.many.frag # found chain 1u61A in template set T0287 3 :NNMRKLFSM 1u61A 37 :NQLHRLGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7539 # 1z0wA.3.175 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :N 1z0wA 590 :S T0287 5 :MRKLFSM 1z0wA 592 :INEVLEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=7541 # 1hw1A.3.121 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 3 :NNMRKLFSM 1hw1A 122 :DKAQEVLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7542 # 2ahrA.3.155 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 3 :NNMRKLFSM 2ahrA 153 :KDFDTFTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7543 # 2b0tA.3.61 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 3 :NNMRKLFSM 2b0tA 62 :NALAELGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7544 # 1yqyA.3.29 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 3 :NNMRKLFSM 1yqyA 287 :EEGRGLLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7545 # 1yavA.3.102 read from T0287.t2k.many.frag # found chain 1yavA in template set T0287 3 :NNMRKLFSM 1yavA 103 :DPIMKGFGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=7546 # 1wu7A.4.178 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 4 :NMRKLFSMI 1wu7A 179 :DPFSVFSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=7547 # 1ah7.4.193 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 4 :NMRKLFSMI 1ah7 194 :NTKDWFVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7548 # 1efyA.4.6 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 4 :NMRKLFSMI 1efyA 668 :PIQDLIKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7549 # 1xsvA.4.28 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 4 :NMRKLFSMI 1xsvA 26 :KQRNYLELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7550 # 1zpyA.4.15 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMI 1zpyA 18 :RDMHRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=7551 # 2czsA.4.15 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 4 :NMRKLFSMI 2czsA 38 :NHKRFYDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7552 # 1m5wA.4.114 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 4 :NMRKLFSMI 1m5wA 115 :KMRDACKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7553 # 1e9rA.4.167 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 4 :NMRKLFSMI 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7554 # 1ldjA.4.301 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 4 :NMRKL 1ldjA 318 :DLGRM T0287 11 :MI 1ldjA 325 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=7556 # 2b6cA.4.123 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 4 :NMRKLFSMI 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7557 # 1dozA.4.19 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 4 :NMRKLFSMI 1dozA 21 :DIERYYTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7558 # 2f22A.4.35 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 4 :NMRKLFSMI 2f22A 35 :TLRKLFIHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7559 # 2b06A.4.123 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 4 :NMRKLFSMI 2b06A 124 :DMLPLMEMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=7560 # 1yvrA.4.146 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 4 :NMRKLFSMI 1yvrA 147 :ALRKAVSDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=7561 # 1xfiA.4.40 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 4 :NMRKLFSMI 1xfiA 41 :NEISWINVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7562 # 1wb9A.4.431 read from T0287.t2k.many.frag # found chain 1wb9A in template set T0287 4 :NMRKLFSMI 1wb9A 432 :ELDEWRALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7563 # 1qg8A.4.14 read from T0287.t2k.many.frag # found chain 1qg8A in training set T0287 4 :NMRKLFSMI 1qg8A 16 :YVAKSISSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7564 # 1z0wA.4.176 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 4 :NMRKLFSMI 1z0wA 591 :RINEVLEHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7565 # 3thiA.4.122 read from T0287.t2k.many.frag # found chain 3thiA in template set T0287 4 :NMRKLFSMI 3thiA 131 :NIYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7566 # 1yavA.4.103 read from T0287.t2k.many.frag # found chain 1yavA in template set T0287 4 :NMRKLFSMI 1yavA 104 :PIMKGFGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7567 # 1hw1A.4.122 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 4 :NMRKLFSMI 1hw1A 123 :KAQEVLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7568 # 1yqyA.4.30 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 4 :NMRKLFSMI 1yqyA 288 :EGRGLLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7569 # 1ua4A.4.240 read from T0287.t2k.many.frag # found chain 1ua4A in template set T0287 4 :NMRKLFSMI 1ua4A 241 :NYKEPFEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7570 # 1v74B.4.4 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 4 :NMRKLFSMI 1v74B 5 :AMIDLAKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7571 # 1sd4A.4.10 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 4 :NMRKLFSMI 1sd4A 11 :AEWDVMNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=7572 # 1u7nA.4.191 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 4 :NMRKLFSMI 1u7nA 189 :LTKKAFELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7573 # 1z7xW.4.214 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 4 :NMRKLFSMI 1z7xW 214 :NCRDLCGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7574 # 1n1bA.4.207 read from T0287.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)N4 (1n1bA)E257 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1n1bA 258 :ARWFIDAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=7575 # 1b25A.4.503 read from T0287.t2k.many.frag # found chain 1b25A in template set T0287 4 :NMRKLFSMI 1b25A 504 :YYPKLLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7576 # 1j93A.4.168 read from T0287.t2k.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N4 (1j93A)N168 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1j93A 169 :FTKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=7577 # 1wu7A.5.179 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 5 :MRKLFSMIA 1wu7A 180 :PFSVFSIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=7578 # 1ah7.5.194 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 5 :MRKLFSMIA 1ah7 195 :TKDWFVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7579 # 1efyA.5.7 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 5 :MRKLFSMIA 1efyA 669 :IQDLIKMIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7580 # 1xsvA.5.29 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 5 :MRKLFSMIA 1xsvA 27 :QRNYLELFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7581 # 2czsA.5.16 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 5 :MRKLFSMIA 2czsA 39 :HKRFYDAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7582 # 1zpyA.5.16 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMIA 1zpyA 18 :RDMHRAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=7583 # 1ldjA.5.302 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 5 :MRKL 1ldjA 319 :LGRM T0287 11 :MIA 1ldjA 325 :LVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=7585 # 1dozA.5.20 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 5 :MRKLFSMIA 1dozA 22 :IERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7586 # 2b6cA.5.124 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 5 :MRKLFSMIA 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7587 # 1m5wA.5.115 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 5 :MRKLFSMIA 1m5wA 116 :MRDACKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7588 # 2b06A.5.124 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 5 :MRKLFSMIA 2b06A 125 :MLPLMEMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=7589 # 1wb9A.5.432 read from T0287.t2k.many.frag # found chain 1wb9A in template set T0287 5 :MRKLFSMIA 1wb9A 433 :LDEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7590 # 3htsB.5.15 read from T0287.t2k.many.frag # found chain 3htsB in training set T0287 5 :MRKLFSMIA 3htsB 198 :VNKLWSMVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7591 # 1e9rA.5.168 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)A13 (1e9rA)T247 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1e9rA 239 :MRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 1 total=7592 # 1u7nA.5.192 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 5 :MRKLFSMIA 1u7nA 190 :TKKAFELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7593 # 1xfiA.5.41 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 5 :MRKLFSMIA 1xfiA 42 :EISWINVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7594 # 1n1bA.5.208 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 5 :MRKLFSMIA 1n1bA 258 :ARWFIDAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7595 # 1yavA.5.104 read from T0287.t2k.many.frag # found chain 1yavA in template set T0287 5 :MRKLFSMIA 1yavA 105 :IMKGFGMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7596 # 3thiA.5.123 read from T0287.t2k.many.frag # found chain 3thiA in template set T0287 5 :MRKLFSMIA 3thiA 132 :IYELYKKIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7597 # 1v74B.5.5 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 5 :MRKLFSMIA 1v74B 6 :MIDLAKLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7598 # 1hw1A.5.123 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 5 :MRKLFSMIA 1hw1A 124 :AQEVLATAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7599 # 1q08A.5.21 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 5 :MRKLFSMIA 1q08A 64 :IRELLSIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7600 # 1b25A.5.504 read from T0287.t2k.many.frag # found chain 1b25A in template set T0287 5 :MRKLFSMIA 1b25A 505 :YPKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7601 # 2f22A.5.36 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 5 :MRKLFSMIA 2f22A 36 :LRKLFIHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7602 # 1n5uA.5.160 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 5 :MRKLFSMIA 1n5uA 161 :YKAAFTECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=7603 # 1sd4A.5.11 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 5 :MRKLFSMIA 1sd4A 12 :EWDVMNIIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=7604 # 1z0wA.5.177 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 5 :MRKLFSMIA 1z0wA 592 :INEVLEHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7605 # 1yvrA.5.147 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 5 :MRKLFSMIA 1yvrA 148 :LRKAVSDWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7606 # 1z7xW.5.215 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 5 :MRKLFSMIA 1z7xW 215 :CRDLCGIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7607 # 2czlA.5.125 read from T0287.t2k.many.frag # found chain 2czlA in template set T0287 5 :MRKLFSMIA 2czlA 126 :YDRILPMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7608 # 1wu7A.6.180 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 6 :RKLFSMIAD 1wu7A 181 :FSVFSIIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7609 # 1ah7.6.195 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 6 :RKLFSMIAD 1ah7 196 :KDWFVKAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7610 # 1efyA.6.8 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 6 :RKLFSMIAD 1efyA 670 :QDLIKMIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7611 # 1xsvA.6.30 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 6 :RKLFSMIAD 1xsvA 28 :RNYLELFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7612 # 2czsA.6.17 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 6 :RKLFSMIAD 2czsA 40 :KRFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7613 # 1dozA.6.21 read from T0287.t2k.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1dozA 23 :ERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=7614 # 1ldjA.6.303 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 6 :RKL 1ldjA 320 :GRM T0287 11 :MIAD 1ldjA 325 :LVSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=7616 # 1zpyA.6.17 read from T0287.t2k.many.frag # found chain 1zpyA in template set T0287 6 :RKLFSMIAD 1zpyA 18 :RDMHRAIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7617 # 2b6cA.6.125 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 6 :RKLFSMIAD 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7618 # 1m5wA.6.116 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 6 :RKLFSMIAD 1m5wA 117 :RDACKRLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7619 # 1n5uA.6.161 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 6 :RKLFSMIAD 1n5uA 162 :KAAFTECCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7620 # 1v74B.6.6 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 6 :RKLFSMIAD 1v74B 7 :IDLAKLFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7621 # 1yavA.6.105 read from T0287.t2k.many.frag # found chain 1yavA in template set T0287 6 :RKLFSMIAD 1yavA 106 :MKGFGMVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7622 # 1u7nA.6.193 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 6 :RKLFSMIAD 1u7nA 191 :KKAFELLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7623 # 1n1bA.6.209 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 6 :RKLFSMIAD 1n1bA 259 :RWFIDAYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7624 # 3htsB.6.16 read from T0287.t2k.many.frag # found chain 3htsB in training set T0287 6 :RKLFSMIAD 3htsB 199 :NKLWSMVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=7625 # 2b06A.6.125 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 6 :RKLFSMIAD 2b06A 126 :LPLMEMMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7626 # 1wb9A.6.433 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 T0287 6 :RKLFSMIA 1wb9A 434 :DEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=7627 # 1hw1A.6.124 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 6 :RKLFSMIAD 1hw1A 125 :QEVLATANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7628 # 1xfiA.6.42 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 6 :RKLFSMIAD 1xfiA 43 :ISWINVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7629 # 1skvA.6.7 read from T0287.t2k.many.frag # found chain 1skvA in template set T0287 6 :RKLFSMIAD 1skvA 8 :KELFEMLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7630 # 1z0wA.6.178 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 6 :RKLFSMIAD 1z0wA 593 :NEVLEHVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7631 # 1q08A.6.22 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 6 :RKLFSMIAD 1q08A 65 :RELLSIRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=7632 # 1sd4A.6.12 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 6 :RKLFSMIAD 1sd4A 13 :WDVMNIIWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7633 # 1b43A.6.247 read from T0287.t2k.many.frag # found chain 1b43A in template set T0287 6 :RKLFSMIAD 1b43A 247 :KKALEIVRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=7634 # 3thiA.6.124 read from T0287.t2k.many.frag # found chain 3thiA in template set T0287 6 :RKLFSMIAD 3thiA 133 :YELYKKIGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7635 # 1b25A.6.505 read from T0287.t2k.many.frag # found chain 1b25A in template set T0287 6 :RKLFSMIAD 1b25A 506 :PKLLKAITG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7636 # 1yvrA.6.148 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 6 :RKLFSMIAD 1yvrA 149 :RKAVSDWYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7637 # 1f7lA.6.12 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 6 :RKLFSMIAD 1f7lA 13 :KRIASMAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7638 # 1elkA.6.37 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 6 :RKLFSMIAD 1elkA 34 :MEICDIINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7639 # 1ah7.7.196 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 7 :KLFSMIADS 1ah7 197 :DWFVKAAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7640 # 1wu7A.7.181 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 7 :KLFSMIADS 1wu7A 182 :SVFSIIDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7641 # 1efyA.7.9 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 7 :KLFSMIADS 1efyA 671 :DLIKMIFDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7642 # 2czsA.7.18 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 7 :KLFSMIADS 2czsA 41 :RFYDAFAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7643 # 1dozA.7.22 read from T0287.t2k.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1dozA 24 :RYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=7644 # 1u7nA.7.194 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 7 :KLFSMIADS 1u7nA 192 :KAFELLAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7645 # 1elkA.7.38 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 7 :KLFSMIADS 1elkA 35 :EICDIINET Number of specific fragments extracted= 1 number of extra gaps= 0 total=7646 # 1hw1A.7.125 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)S15 (1hw1A)V134 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSMIAD 1hw1A 126 :EVLATANE Number of specific fragments extracted= 1 number of extra gaps= 1 total=7647 # 1n5uA.7.162 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 7 :KLFSMIADS 1n5uA 163 :AAFTECCQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7648 # 1ldjA.7.304 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 7 :KL 1ldjA 321 :RM T0287 11 :MIADS 1ldjA 325 :LVSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=7650 # 1xsvA.7.31 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 7 :KLFSMIADS 1xsvA 29 :NYLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7651 # 2b06A.7.126 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 7 :KLFSMIADS 2b06A 127 :PLMEMMEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=7652 # 1z0wA.7.179 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. T0287 7 :KLFSM 1z0wA 594 :EVLEH T0287 13 :ADS 1z0wA 600 :LED Number of specific fragments extracted= 2 number of extra gaps= 1 total=7654 # 1q08A.7.23 read from T0287.t2k.many.frag # found chain 1q08A in template set Warning: unaligning (T0287)D14 (1q08A)D73 because D (zeta) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1q08A 66 :ELLSIRI T0287 15 :S 1q08A 74 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=7656 # 1b43A.7.248 read from T0287.t2k.many.frag # found chain 1b43A in template set T0287 7 :KLFSMIADS 1b43A 248 :KALEIVRHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7657 # 3htsB.7.17 read from T0287.t2k.many.frag # found chain 3htsB in training set T0287 7 :KLFSMIADS 3htsB 200 :KLWSMVNDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7658 # 1v74B.7.7 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 7 :KLFSMIADS 1v74B 8 :DLAKLFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7659 # 1n1bA.7.210 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 7 :KLFSMIADS 1n1bA 260 :WFIDAYARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7660 # 1qv9A.7.81 read from T0287.t2k.many.frag # found chain 1qv9A in training set T0287 7 :KLFSMIADS 1qv9A 82 :KAREMLADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7661 # 1f7lA.7.13 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 7 :KLFSMIADS 1f7lA 14 :RIASMAGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7662 # 1m5wA.7.117 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 7 :KLFSMIADS 1m5wA 118 :DACKRLADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7663 # 1sd4A.7.13 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 7 :KLFSMIADS 1sd4A 14 :DVMNIIWDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7664 # 3thiA.7.125 read from T0287.t2k.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 7 :KLFSMI 3thiA 134 :ELYKKI T0287 14 :DS 3thiA 141 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=7666 # 1zpyA.7.18 read from T0287.t2k.many.frag # found chain 1zpyA in template set T0287 7 :KLFSMIADS 1zpyA 19 :DMHRAIISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7667 # 1skvA.7.8 read from T0287.t2k.many.frag # found chain 1skvA in template set T0287 7 :KLFSMIADS 1skvA 9 :ELFEMLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=7668 # 2b6cA.7.126 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)A13 (2b6cA)Y130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (2b6cA)G131 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (2b6cA)A132 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSMI 2b6cA 124 :TIFALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=7669 # 1zv1A.7.14 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 7 :KLFSMIADS 1zv1A 15 :KLLEKFRYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=7670 # 1g8mA.7.153 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 7 :KLFSMIADS 1g8mA 154 :SVAKEMAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7671 # 1wb9A.7.434 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 7 :KLFSMIA 1wb9A 435 :EWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=7672 # 1h6kA.7.496 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 7 :KLFSMIADS 1h6kA 516 :EIFSILKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7673 # 1ah7.8.197 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 8 :LFSMIADSK 1ah7 198 :WFVKAAVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7674 # 1wu7A.8.182 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 8 :LFSMIADSK 1wu7A 183 :VFSIIDRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=7675 # 1elkA.8.39 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 8 :LFSMIADSK 1elkA 36 :ICDIINETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7676 # 1z0wA.8.180 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1z0wA 595 :VLEHVLED Number of specific fragments extracted= 1 number of extra gaps= 1 total=7677 # 1n5uA.8.163 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 8 :LFSMIADSK 1n5uA 164 :AFTECCQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7678 # 1u7nA.8.195 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 8 :LFSMIADSK 1u7nA 193 :AFELLAADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7679 # 1dozA.8.23 read from T0287.t2k.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1dozA 25 :YYTHIRR T0287 16 :K 1dozA 33 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=7681 # 1f7lA.8.14 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 8 :LFSMIADSK 1f7lA 15 :IASMAGRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7682 # 1xsvA.8.32 read from T0287.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)K16 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1xsvA 30 :YLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=7683 # 1efyA.8.10 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 8 :LFSMIADSK 1efyA 672 :LIKMIFDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7684 # 1b43A.8.249 read from T0287.t2k.many.frag # found chain 1b43A in template set T0287 8 :LFSMIADSK 1b43A 249 :ALEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7685 # 1q08A.8.24 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 8 :LFSMIADSK 1q08A 67 :LLSIRIDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7686 # 2b06A.8.127 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 8 :LFSMIADSK 2b06A 128 :LMEMMEAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7687 # 2czsA.8.19 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S15 (2czsA)G49 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 2czsA 42 :FYDAFAQ T0287 16 :K 2czsA 50 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=7689 # 1ldjA.8.305 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 8 :L 1ldjA 322 :M T0287 11 :MIADSK 1ldjA 325 :LVSRIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=7691 # 3htsB.8.18 read from T0287.t2k.many.frag # found chain 3htsB in training set T0287 8 :LFSMIADSK 3htsB 201 :LWSMVNDKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7692 # 1t0qB.8.270 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)K16 (1t0qB)E279 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1t0qB 271 :LVKMALEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=7693 # 1qv9A.8.82 read from T0287.t2k.many.frag # found chain 1qv9A in training set T0287 8 :LFSMIADSK 1qv9A 83 :AREMLADSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7694 # 1zc6A.8.169 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 8 :LFSMIADSK 1zc6A 170 :LTQMALDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7695 # 1sd4A.8.14 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 8 :LFSMIADSK 1sd4A 15 :VMNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7696 # 1v74B.8.8 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 8 :LFSMIADSK 1v74B 9 :LAKLFLASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7697 # 1g8mA.8.154 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 8 :LFSMIADSK 1g8mA 155 :VAKEMAASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7698 # 1hw1A.8.126 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIA 1hw1A 127 :VLATAN T0287 15 :SK 1hw1A 134 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=7700 # 1tn6A.8.174 read from T0287.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1tn6A)D181 because D (zeta) conformation "forbidden" or filtered. T0287 8 :LFSMI 1tn6A 175 :LVEWL T0287 15 :SK 1tn6A 182 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=7702 # 1otvA.8.192 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 8 :LFSMIADSK 1otvA 193 :LAKAYCDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7703 # 1ak0.8.92 read from T0287.t2k.many.frag # found chain 1ak0 in training set T0287 8 :LFSMIADSK 1ak0 93 :YTQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7704 # 1hf8A.8.44 read from T0287.t2k.many.frag # found chain 1hf8A in template set T0287 8 :LFSMIADSK 1hf8A 45 :LIQCTNEMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7705 # 1zv1A.8.15 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 8 :LFSMIADSK 1zv1A 16 :LLEKFRYPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=7706 # 1n1bA.8.211 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 8 :LFSMIADSK 1n1bA 261 :FIDAYARRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=7707 # 1ej0A.8.79 read from T0287.t2k.many.frag # found chain 1ej0A in training set Warning: unaligning (T0287)A13 (1ej0A)G114 because S (epsilon) conformation "forbidden" or filtered. T0287 8 :LFSMI 1ej0A 109 :LLERV T0287 14 :DSK 1ej0A 115 :DSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=7709 # 1ah7.9.198 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 9 :FSMIADSKD 1ah7 199 :FVKAAVSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7710 # 1elkA.9.40 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 9 :FSMIADSKD 1elkA 37 :CDIINETEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7711 # 1n5uA.9.164 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 9 :FSMIADSKD 1n5uA 165 :FTECCQAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7712 # 1z0wA.9.181 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 9 :FSMIADSKD 1z0wA 596 :LEHVLEDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7713 # 1u7nA.9.196 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 9 :FSMIADSKD 1u7nA 194 :FELLAADET Number of specific fragments extracted= 1 number of extra gaps= 0 total=7714 # 1otvA.9.193 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 9 :FSMIADSKD 1otvA 194 :AKAYCDSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7715 # 1b43A.9.250 read from T0287.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 T0287 9 :FSMIADSK 1b43A 250 :LEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=7716 # 1f7lA.9.15 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 9 :FSMIADSKD 1f7lA 16 :ASMAGRQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7717 # 1g8mA.9.155 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 9 :FSMIADSKD 1g8mA 156 :AKEMAASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7718 # 1t0qB.9.271 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)A13 (1t0qB)L276 because G (3-10) conformation "forbidden" or filtered. T0287 9 :FSMI 1t0qB 272 :VKMA T0287 14 :DSKD 1t0qB 277 :EKEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=7720 # 1q08A.9.25 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 9 :FSMIADSKD 1q08A 68 :LSIRIDPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=7721 # 1wu7A.9.183 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 9 :FSMIADSKD 1wu7A 184 :FSIIDRYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7722 # 1ldjA.9.306 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 Warning: unaligning (T0287)D17 (1ldjA)D331 because L (left) conformation "forbidden" or filtered. T0287 11 :MIADSK 1ldjA 325 :LVSRIQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=7723 # 2czsA.9.20 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 9 :FSMIADSKD 2czsA 43 :YDAFAQGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7724 # 1zc6A.9.170 read from T0287.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1zc6A 171 :TQMALDGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=7725 # 1hw1A.9.127 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 9 :FSMIADSKD 1hw1A 128 :LATANEVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7726 # 1qkrA.9.55 read from T0287.t2k.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)A13 (1qkrA)R938 because G (3-10) conformation "forbidden" or filtered. T0287 9 :FSMI 1qkrA 934 :SRLV T0287 14 :DSKD 1qkrA 939 :GGSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=7728 # 1n1bA.9.212 read from T0287.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)S15 (1n1bA)R268 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIAD 1n1bA 262 :IDAYAR T0287 16 :KD 1n1bA 269 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=7730 # 1tn6A.9.175 read from T0287.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1tn6A)D181 because D (zeta) conformation "forbidden" or filtered. T0287 9 :FSMI 1tn6A 176 :VEWL T0287 15 :SKD 1tn6A 182 :PSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=7732 # 1dozA.9.24 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 9 :FSMIADSKD 1dozA 26 :YTHIRRGRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7733 # 1v58A.9.145 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 9 :FSMIADSKD 1v58A 146 :AAAILASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7734 # 1sd4A.9.15 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 9 :FSMIADSKD 1sd4A 16 :MNIIWDKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7735 # 1xsvA.9.33 read from T0287.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)K16 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1xsvA 31 :LELFYLE T0287 17 :D 1xsvA 39 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=7737 # 1qv9A.9.83 read from T0287.t2k.many.frag # found chain 1qv9A in training set T0287 9 :FSMIADSKD 1qv9A 84 :REMLADSEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7738 # 2b06A.9.128 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 9 :FSMIADSKD 2b06A 129 :MEMMEAPDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7739 # 1zv1A.9.16 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMI 1zv1A 17 :LEKF T0287 14 :DSKD 1zv1A 22 :YPWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=7741 # 1ak0.9.93 read from T0287.t2k.many.frag # found chain 1ak0 in training set T0287 9 :FSMIADSKD 1ak0 94 :TQRVSDSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7742 # 1xttA.9.14 read from T0287.t2k.many.frag # found chain 1xttA in training set T0287 9 :FSMIADSKD 1xttA 15 :LTQLRDKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7743 # 1tu9A.9.12 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1tu9A 11 :YGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 1 total=7744 # 1ci4A.9.45 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1ci4A 46 :LGQFLVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=7745 # 1n5uA.10.165 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)S15 (1n5uA)A171 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIAD 1n5uA 166 :TECCQ T0287 16 :KDK 1n5uA 172 :ADK Number of specific fragments extracted= 2 number of extra gaps= 1 total=7747 # 1ah7.10.199 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 10 :SMIADSKDK 1ah7 200 :VKAAVSQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7748 # 1otvA.10.194 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 10 :SMIADSKDK 1otvA 195 :KAYCDSAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7749 # 1z0wA.10.182 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SMIADS 1z0wA 597 :EHVLED T0287 17 :DK 1z0wA 604 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=7751 # 1elkA.10.41 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 10 :SMIADSKDK 1elkA 38 :DIINETEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7752 # 1v58A.10.146 read from T0287.t2k.many.frag # found chain 1v58A in training set Warning: unaligning (T0287)D17 (1v58A)D154 because D (zeta) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1v58A 147 :AAILASK T0287 18 :K 1v58A 155 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=7754 # 1n1bA.10.213 read from T0287.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)K18 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1n1bA 263 :DAYARRPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=7755 # 1qkrA.10.56 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 10 :SMIADSKDK 1qkrA 935 :RLVRGGSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7756 # 1t0qB.10.272 read from T0287.t2k.many.frag # found chain 1t0qB in template set T0287 10 :SMIADSKDK 1t0qB 273 :KMALEKEGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7757 # 1g8mA.10.156 read from T0287.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0287)K18 (1g8mA)K165 because L (left) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1g8mA 157 :KEMAASKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=7758 # 1hw1A.10.128 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIA 1hw1A 129 :ATAN T0287 15 :SKDK 1hw1A 134 :VADH Number of specific fragments extracted= 2 number of extra gaps= 1 total=7760 # 1f7lA.10.16 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 10 :SMIADSKDK 1f7lA 17 :SMAGRQKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7761 # 1ci4A.10.46 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 10 :SMIADS 1ci4A 47 :GQFLVL T0287 18 :K 1ci4A 55 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=7763 # 1zc6A.10.171 read from T0287.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)K16 (1zc6A)R178 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1zc6A)S180 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADS 1zc6A 172 :QMALDG T0287 17 :D 1zc6A 179 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=7765 # 1zv1A.10.17 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 10 :SMIADSKDK 1zv1A 18 :EKFRYPWEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7766 # 1q08A.10.26 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 10 :SMIADSKDK 1q08A 69 :SIRIDPEHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=7767 # 1u7nA.10.197 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 10 :SMIADSKDK 1u7nA 195 :ELLAADETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7768 # 1b43A.10.251 read from T0287.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1b43A)P259 T0287 10 :SMIADSK 1b43A 251 :EIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=7769 # 1ldjA.10.307 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 Warning: unaligning (T0287)S15 (1ldjA)I329 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1ldjA)Q330 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIAD 1ldjA 325 :LVSR T0287 17 :DK 1ldjA 331 :DG Number of specific fragments extracted= 2 number of extra gaps= 2 total=7771 # 1tu9A.10.13 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1tu9A 12 :GRCCAST T0287 18 :K 1tu9A 20 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=7773 # 1wb9A.10.437 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 10 :SMIA 1wb9A 438 :ALAD T0287 16 :KDK 1wb9A 444 :TDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=7775 # 1zybA.10.193 read from T0287.t2k.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)I12 (1zybA)L184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 10 :SM 1zybA 182 :RC T0287 14 :DSKDK 1zybA 186 :DTRLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=7777 # 1ak0.10.94 read from T0287.t2k.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)A13 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. T0287 10 :SMI 1ak0 95 :QRV T0287 14 :DSKDK 1ak0 99 :DSSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=7779 # 1aa7A.10.11 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SMIADS 1aa7A 12 :LSIIPS T0287 17 :DK 1aa7A 19 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7781 # 1qv9A.10.84 read from T0287.t2k.many.frag # found chain 1qv9A in training set Warning: unaligning (T0287)D17 (1qv9A)Y92 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1qv9A 85 :EMLADSE T0287 18 :K 1qv9A 93 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=7783 # 2bnlA.10.8 read from T0287.t2k.many.frag # found chain 2bnlA in template set T0287 10 :SMIADSKDK 2bnlA 9 :QFIAENQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7784 # 1tn6A.10.176 read from T0287.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. T0287 10 :SMI 1tn6A 177 :EWL T0287 14 :DSKDK 1tn6A 181 :DPSQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=7786 # 1i4dA.10.52 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 10 :SMIADSKDK 1i4dA 74 :DLSQKSPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7787 # 1xttA.10.15 read from T0287.t2k.many.frag # found chain 1xttA in training set Warning: unaligning (T0287)D17 (1xttA)T23 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1xttA 16 :TQLRDKY T0287 18 :K 1xttA 24 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=7789 # 1v74B.10.10 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 10 :SMIADSKDK 1v74B 11 :KLFLASKIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7790 # 1n5uA.11.166 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)D17 (1n5uA)D173 because D (zeta) conformation "forbidden" or filtered. T0287 11 :MIADSK 1n5uA 167 :ECCQAA T0287 18 :KK 1n5uA 174 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=7792 # 1otvA.11.195 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 11 :MIADSKDKK 1otvA 196 :AYCDSAEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7793 # 1qkrA.11.57 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 11 :MIADSKDKK 1qkrA 936 :LVRGGSGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7794 # 1z0wA.11.183 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 11 :MIADSKDKK 1z0wA 598 :HVLEDGKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7795 # 1ah7.11.200 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 11 :MIADSKDKK 1ah7 201 :KAAVSQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7796 # 1v58A.11.147 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 11 :MIADSKDKK 1v58A 148 :AILASKDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7797 # 1n1bA.11.214 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 11 :MIADSKDKK 1n1bA 264 :AYARRPDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7798 # 1elkA.11.42 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 11 :MIADSKDKK 1elkA 39 :IINETEEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=7799 # 1ci4A.11.47 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADSK 1ci4A 48 :QFLVLK T0287 19 :K 1ci4A 56 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=7801 # 1zv1A.11.18 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1zv1A)P23 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MI 1zv1A 19 :KF T0287 14 :D 1zv1A 22 :Y T0287 16 :KDKK 1zv1A 24 :WELM Number of specific fragments extracted= 3 number of extra gaps= 2 total=7804 # 1aa7A.11.12 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)I12 (1aa7A)I14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :M 1aa7A 13 :S T0287 13 :ADS 1aa7A 15 :IPS T0287 17 :DKK 1aa7A 19 :PLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=7807 # 1t0qB.11.273 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADSK 1t0qB 274 :MALEKE T0287 18 :KK 1t0qB 281 :NR Number of specific fragments extracted= 2 number of extra gaps= 1 total=7809 # 1ak0.11.95 read from T0287.t2k.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 T0287 11 :MIADSKDK 1ak0 96 :RVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=7810 # 1zc6A.11.172 read from T0287.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 (1zc6A)H181 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADSK 1zc6A 173 :MALDGR T0287 18 :K 1zc6A 180 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=7812 # 1hw1A.11.129 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIA 1hw1A 130 :TAN T0287 15 :SKDKK 1hw1A 134 :VADHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=7814 # 1g8mA.11.157 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 11 :MIADSKDKK 1g8mA 158 :EMAASKDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7815 # 2bl2A.11.42 read from T0287.t2k.many.frag # found chain 2bl2A in template set T0287 11 :MIADSKDKK 2bl2A 43 :ALTTSQPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7816 # 1kxu.11.137 read from T0287.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MIA 1kxu 128 :NLR T0287 15 :SKDKK 1kxu 132 :SPLGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=7818 # 1zybA.11.194 read from T0287.t2k.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zybA)D186 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MI 1zybA 183 :CL T0287 15 :SKDKK 1zybA 187 :TRLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=7820 # 1tu9A.11.14 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K16 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADS 1tu9A 13 :RCCAS T0287 18 :KK 1tu9A 20 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=7822 # 1i4dA.11.53 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 11 :MIADSKDKK 1i4dA 75 :LSQKSPELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7823 # 1wb9A.11.438 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 11 :MIA 1wb9A 439 :LAD T0287 16 :KDKK 1wb9A 444 :TDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7825 # 1on2A.11.30 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 11 :MIADSKDKK 1on2A 31 :ALAVHPSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7826 # 1f7lA.11.17 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 11 :MIADSKDKK 1f7lA 18 :MAGRQKRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7827 # 1jfbA.11.156 read from T0287.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MI 1jfbA 156 :LL T0287 14 :DSKDKK 1jfbA 159 :VPFNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7829 # 1ez3A.11.36 read from T0287.t2k.many.frag # found chain 1ez3A in template set T0287 11 :MIADSKDKK 1ez3A 60 :AILASPNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7830 # 1rzhM.11.236 read from T0287.t2k.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)D14 (1rzhM)D240 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1rzhM)G242 because E (beta_S) conformation "forbidden" or filtered. T0287 11 :MIA 1rzhM 237 :QIA T0287 15 :S 1rzhM 241 :R T0287 17 :DKK 1rzhM 243 :TAA Number of specific fragments extracted= 3 number of extra gaps= 2 total=7833 # 1xttA.11.16 read from T0287.t2k.many.frag # found chain 1xttA in training set T0287 11 :MIADSKDKK 1xttA 17 :QLRDKYTDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7834 # 1q08A.11.27 read from T0287.t2k.many.frag # found chain 1q08A in template set Warning: unaligning (T0287)A13 (1q08A)I72 because G (3-10) conformation "forbidden" or filtered. T0287 11 :MI 1q08A 70 :IR T0287 14 :DSKDKK 1q08A 73 :DPEHHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=7836 # 1oksA.11.12 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 11 :MIADSKDKK 1oksA 13 :SSRLEEDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7837 # 1n5uA.12.167 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 12 :IADSKDKKE 1n5uA 168 :CCQAADKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7838 # 1otvA.12.196 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 12 :IADSKDKKE 1otvA 197 :YCDSAEKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7839 # 1qkrA.12.58 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 12 :IADSKDKKE 1qkrA 937 :VRGGSGNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7840 # 1z0wA.12.184 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1z0wA)D602 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1z0wA 600 :L T0287 17 :DKKE 1z0wA 604 :KKKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=7842 # 1aa7A.12.13 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADS 1aa7A 14 :IIPS T0287 17 :DKKE 1aa7A 19 :PLKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=7844 # 1ah7.12.201 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 12 :IADSKDKKE 1ah7 202 :AAVSQEYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7845 # 1v58A.12.148 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 12 :IADSKDKKE 1v58A 149 :ILASKDPAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7846 # 1zv1A.12.19 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1zv1A 20 :F T0287 14 :DSKDKKE 1zv1A 22 :YPWELMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=7848 # 1n1bA.12.215 read from T0287.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)K18 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IADSKD 1n1bA 265 :YARRPD T0287 19 :KE 1n1bA 272 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=7850 # 1elkA.12.43 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 12 :IADSKDKKE 1elkA 40 :INETEEGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7851 # 1ci4A.12.48 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 12 :IADSK 1ci4A 49 :FLVLK T0287 18 :KKE 1ci4A 55 :DED Number of specific fragments extracted= 2 number of extra gaps= 1 total=7853 # 1hw1A.12.130 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 12 :IADSKDKKE 1hw1A 131 :ANEVADHAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7854 # 1kxu.12.138 read from T0287.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IA 1kxu 129 :LR T0287 15 :SKDKKE 1kxu 132 :SPLGQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=7856 # 1t0qB.12.274 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IADSK 1t0qB 275 :ALEKE T0287 18 :KKE 1t0qB 281 :NRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=7858 # 1ak0.12.96 read from T0287.t2k.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 12 :IADSKDK 1ak0 97 :VSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=7859 # 1on2A.12.31 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 12 :IADSKDKKE 1on2A 32 :LAVHPSSVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7860 # 1rzhM.12.237 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 12 :IADSKDKKE 1rzhM 238 :IADRGTAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7861 # 1i4dA.12.54 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 12 :IADSKDKKE 1i4dA 76 :SQKSPELQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7862 # 2bl2A.12.43 read from T0287.t2k.many.frag # found chain 2bl2A in template set Warning: unaligning (T0287)K16 (2bl2A)Q48 because D (zeta) conformation "forbidden" or filtered. T0287 12 :IADS 2bl2A 44 :LTTS T0287 17 :DKKE 2bl2A 49 :PEKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=7864 # 1wb9A.12.439 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 12 :IA 1wb9A 440 :AD T0287 16 :KDKKE 1wb9A 444 :TDYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=7866 # 1jfbA.12.157 read from T0287.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :I 1jfbA 157 :L T0287 14 :DSKDKKE 1jfbA 159 :VPFNDLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=7868 # 1m0wA.12.3 read from T0287.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKE 1m0wA 7 :SKDQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7869 # 1oksA.12.13 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 12 :IADSKDKKE 1oksA 14 :SRLEEDRKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7870 # 1tu9A.12.15 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IADSK 1tu9A 14 :CCAST T0287 18 :KKE 1tu9A 20 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=7872 # 1zybA.12.195 read from T0287.t2k.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zybA)D186 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :I 1zybA 184 :L T0287 15 :SKDKKE 1zybA 187 :TRLNIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=7874 # 1lvaA.12.26 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 12 :IADSKDKKE 1lvaA 403 :ASLSLEETR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7875 # 1ymtA.12.18 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 12 :IADSKDKKE 1ymtA 235 :EPEEDQVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7876 # 1q52A.12.266 read from T0287.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)I12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q52A)L267 Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 13 :ADS 1q52A 268 :LDD T0287 17 :DKKE 1q52A 272 :LVGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=7878 # 1zc6A.12.173 read from T0287.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)E20 (1zc6A)S182 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADSKDKK 1zc6A 174 :ALDGRHSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=7879 # 1r6xA.12.11 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 12 :IADSKDKKE 1r6xA 13 :IARDALKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=7880 # 1qkrA.13.59 read from T0287.t2k.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)A13 (1qkrA)R938 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1qkrA)N943 because G (3-10) conformation "forbidden" or filtered. T0287 14 :DSKD 1qkrA 939 :GGSG T0287 19 :KEK 1qkrA 944 :KRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=7882 # 1n5uA.13.168 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 13 :ADSKDKKEK 1n5uA 169 :CQAADKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=7883 # 1otvA.13.197 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 13 :ADSKDKKEK 1otvA 198 :CDSAEKQNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7884 # 1aa7A.13.14 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1aa7A 15 :I T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEK 1aa7A 19 :PLKAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=7887 # 1z0wA.13.185 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)A13 (1z0wA)L600 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 14 :DS 1z0wA 601 :ED T0287 17 :DKKEK 1z0wA 604 :KKKNR Number of specific fragments extracted= 2 number of extra gaps= 2 total=7889 # 1zv1A.13.20 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1zv1A 22 :YPWELMPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=7890 # 1on2A.13.32 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 13 :ADSKDKKEK 1on2A 33 :AVHPSSVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7891 # 1ah7.13.202 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 13 :ADSKDKKEK 1ah7 203 :AVSQEYADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7892 # 1ci4A.13.49 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 13 :ADSK 1ci4A 50 :LVLK T0287 18 :KKEK 1ci4A 55 :DEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7894 # 1lvaA.13.27 read from T0287.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1lvaA 405 :LSLEETRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=7895 # 1kxu.13.139 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 13 :ADSKDKKEK 1kxu 130 :RESPLGQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7896 # 1n1bA.13.216 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 13 :ADSKDKKEK 1n1bA 266 :ARRPDMNPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7897 # 1m0wA.13.4 read from T0287.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEK 1m0wA 7 :SKDQLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7898 # 1oksA.13.14 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 13 :ADSKDKKEK 1oksA 15 :RLEEDRKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7899 # 1hw1A.13.131 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 13 :ADSKDKKEK 1hw1A 132 :NEVADHADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7900 # 1v58A.13.149 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 13 :ADSKDKKEK 1v58A 150 :LASKDPAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=7901 # 1elkA.13.44 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 13 :ADSKDKKEK 1elkA 41 :NETEEGPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=7902 # 1rzhM.13.238 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 13 :ADSKDKKEK 1rzhM 239 :ADRGTAAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=7903 # 1q52A.13.267 read from T0287.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 13 :ADS 1q52A 268 :LDD T0287 17 :DKKEK 1q52A 272 :LVGQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=7905 # 1t0qB.13.275 read from T0287.t2k.many.frag # found chain 1t0qB in template set T0287 13 :ADSKDKKEK 1t0qB 276 :LEKEGNREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7906 # 1ymtA.13.19 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 13 :ADSKDKKEK 1ymtA 236 :PEEDQVRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=7907 # 1ak0.13.97 read from T0287.t2k.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 13 :ADSKDK 1ak0 98 :SDSSLS T0287 21 :K 1ak0 106 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=7909 # 1jfbA.13.158 read from T0287.t2k.many.frag # found chain 1jfbA in training set T0287 13 :ADSKDKKEK 1jfbA 158 :GVPFNDLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7910 # 1i4dA.13.55 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 13 :ADSKDKKEK 1i4dA 77 :QKSPELQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7911 # 1r6xA.13.12 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 13 :ADSKDKKEK 1r6xA 14 :ARDALKKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7912 # 2ayuA.13.86 read from T0287.t2k.many.frag # found chain 2ayuA in template set Warning: unaligning (T0287)D14 (2ayuA)L88 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :A 2ayuA 87 :G T0287 15 :SKDKKEK 2ayuA 89 :PKNVKEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=7914 # 1yrtA.13.208 read from T0287.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1yrtA 209 :V T0287 15 :SKDKKEK 1yrtA 211 :SGDSVTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=7916 # 1szhA.13.17 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 13 :ADSKDKKEK 1szhA 32 :CCTRNRQEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=7917 # 1wb9A.13.440 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 13 :A 1wb9A 441 :D T0287 16 :KDKKEK 1wb9A 444 :TDYLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=7919 # 2bl2A.13.44 read from T0287.t2k.many.frag # found chain 2bl2A in template set T0287 13 :ADSKDKKEK 2bl2A 45 :TTSQPEKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7920 # 1qkrA.14.60 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 14 :DSKDKKEKL 1qkrA 939 :GGSGNKRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7921 # 1n5uA.14.169 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 14 :DSKDKKEKL 1n5uA 170 :QAADKAACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7922 # 1aa7A.14.15 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKL 1aa7A 19 :PLKAEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=7924 # 1otvA.14.198 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 14 :DSKDKKEKL 1otvA 199 :DSAEKQNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=7925 # 1on2A.14.33 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 14 :DSKDKKEKL 1on2A 34 :VHPSSVTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=7926 # 1z0wA.14.186 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 14 :DSKDKKEKL 1z0wA 601 :EDGKKKNRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7927 # 1lvaA.14.28 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 14 :DSKDKKEKL 1lvaA 405 :LSLEETRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7928 # 1kxu.14.140 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 14 :DSKDKKEKL 1kxu 131 :ESPLGQEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7929 # 1hw1A.14.132 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 14 :DSKDKKEKL 1hw1A 133 :EVADHADAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7930 # 1rzhM.14.239 read from T0287.t2k.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)D14 (1rzhM)D240 because D (zeta) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1rzhM 241 :RGTAAERA Number of specific fragments extracted= 1 number of extra gaps= 1 total=7931 # 1ci4A.14.50 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 14 :DS 1ci4A 51 :VL T0287 18 :KKEKL 1ci4A 55 :DEDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=7933 # 1zv1A.14.21 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 14 :DSKDKKEKL 1zv1A 22 :YPWELMPLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=7934 # 1szhA.14.18 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 14 :DSKDKKEKL 1szhA 33 :CTRNRQECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=7935 # 1m0wA.14.5 read from T0287.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEKL 1m0wA 7 :SKDQLNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7936 # 1r6xA.14.13 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 14 :DSKDKKEKL 1r6xA 15 :RDALKKNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7937 # 1yovA.14.237 read from T0287.t2k.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1yovA)T236 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKL 1yovA 237 :YKEKEDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=7938 # 1ah7.14.203 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 14 :DSKDKKEKL 1ah7 204 :VSQEYADKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=7939 # 1ymtA.14.20 read from T0287.t2k.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)D14 (1ymtA)E237 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1ymtA 238 :EDQVRARI Number of specific fragments extracted= 1 number of extra gaps= 1 total=7940 # 1q52A.14.268 read from T0287.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 14 :DS 1q52A 269 :DD T0287 17 :DKKEKL 1q52A 272 :LVGQQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7942 # 1oksA.14.15 read from T0287.t2k.many.frag # found chain 1oksA in training set Warning: unaligning (T0287)S15 (1oksA)E17 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1oksA 16 :L T0287 16 :KDKKEKL 1oksA 18 :EDRKRYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7944 # 1gxjA.14.40 read from T0287.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0287)D14 (1gxjA)E525 because E (beta_S) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1gxjA 526 :VDEKYSLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=7945 # 1yiiA.14.28 read from T0287.t2k.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)D14 (1yiiA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1yiiA)G32 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1yiiA)T33 because E (beta_S) conformation "forbidden" or filtered. T0287 15 :S 1yiiA 31 :M T0287 18 :KKEKL 1yiiA 34 :DEETI Number of specific fragments extracted= 2 number of extra gaps= 2 total=7947 # 1xdpA.14.66 read from T0287.t2k.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)D17 (1xdpA)S71 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DSK 1xdpA 68 :GSN T0287 18 :KKEKL 1xdpA 72 :HSRHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7949 # 1g2yA.14.17 read from T0287.t2k.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. T0287 14 :DS 1g2yA 18 :ES T0287 17 :DKKEKL 1g2yA 21 :LSKEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7951 # 1n1bA.14.217 read from T0287.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)K18 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 (1n1bA)N272 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DSKD 1n1bA 267 :RRPD T0287 20 :EKL 1n1bA 273 :PLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=7953 # 1jfbA.14.159 read from T0287.t2k.many.frag # found chain 1jfbA in training set T0287 14 :DSKDKKEKL 1jfbA 159 :VPFNDLEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7954 # 1elkA.14.45 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 14 :DSKDKKEKL 1elkA 42 :ETEEGPKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7955 # 1yrtA.14.209 read from T0287.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1yrtA 211 :SGDSVTDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=7956 # 1i4dA.14.56 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 14 :DSKDKKEKL 1i4dA 78 :KSPELQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7957 # 2ayuA.14.87 read from T0287.t2k.many.frag # found chain 2ayuA in template set Warning: unaligning (T0287)S15 (2ayuA)P89 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 2ayuA 88 :L T0287 16 :KDKKEKL 2ayuA 90 :KNVKEKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7959 # 1qkrA.15.61 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 15 :SKDKKEKLI 1qkrA 940 :GSGNKRALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7960 # 1aa7A.15.16 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKLI 1aa7A 19 :PLKAEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=7962 # 1szhA.15.19 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 15 :SKDKKEKLI 1szhA 34 :TRNRQECCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7963 # 1on2A.15.34 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 15 :SKDKKEKLI 1on2A 35 :HPSSVTKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7964 # 1z0wA.15.187 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1z0wA 602 :D T0287 17 :DKKEKLI 1z0wA 604 :KKKNRLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=7966 # 1otvA.15.199 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 15 :SKDKKEKLI 1otvA 200 :SAEKQNRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=7967 # 1r6xA.15.14 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 15 :SKDKKEKLI 1r6xA 16 :DALKKNELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7968 # 1w8iA.15.55 read from T0287.t2k.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)D17 (1w8iA)L58 because E (beta_S) conformation "forbidden" or filtered. T0287 15 :SK 1w8iA 56 :KK T0287 18 :KKEKLI 1w8iA 59 :PADKFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7970 # 1g2yA.15.18 read from T0287.t2k.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)D17 (1g2yA)L21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1g2yA)S22 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SK 1g2yA 19 :SG T0287 19 :KEKLI 1g2yA 23 :KEALI Number of specific fragments extracted= 2 number of extra gaps= 1 total=7972 # 1lvaA.15.29 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 15 :SKDKKEKLI 1lvaA 406 :SLEETRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7973 # 1rzhM.15.240 read from T0287.t2k.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)S15 (1rzhM)R241 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1rzhM 242 :GTAAERAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=7974 # 1kxu.15.141 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 15 :SKDKKEKLI 1kxu 132 :SPLGQEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7975 # 1n5uA.15.170 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 15 :SKDKKEKLI 1n5uA 171 :AADKAACLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7976 # 1yiiA.15.29 read from T0287.t2k.many.frag # found chain 1yiiA in training set T0287 15 :SKDKKEKLI 1yiiA 31 :MGTDEETIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7977 # 1hw1A.15.133 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 15 :SKDKKEKLI 1hw1A 134 :VADHADAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=7978 # 1ci4A.15.51 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 15 :SK 1ci4A 52 :LK T0287 18 :KKEKLI 1ci4A 55 :DEDLFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=7980 # 1ymtA.15.21 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 15 :SKDKKEKLI 1ymtA 238 :EDQVRARIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7981 # 1yovA.15.238 read from T0287.t2k.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKLI 1yovA 237 :YKEKEDFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=7982 # 1uw4B.15.16 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)S15 (1uw4B)S784 because Y (epsilon') conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1uw4B 785 :KVTTEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=7983 # 1r7jA.15.32 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 15 :SKDKKEKLI 1r7jA 33 :SYALTGRYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7984 # 1oksA.15.16 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 15 :SKDKKEKLI 1oksA 17 :EEDRKRYLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=7985 # 1xdpA.15.67 read from T0287.t2k.many.frag # found chain 1xdpA in template set T0287 15 :SKDKKEKLI 1xdpA 69 :SNSHSRHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7986 # 1usyA.15.142 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 15 :SKDKKEKLI 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7987 # 1q52A.15.269 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 15 :SKDKKEKLI 1q52A 270 :DGLVGQQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7988 # 1zv1A.15.22 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 15 :SKDKKEKLI 1zv1A 23 :PWELMPLMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=7989 # 1m0wA.15.6 read from T0287.t2k.many.frag # found chain 1m0wA in training set T0287 15 :SKDKKEKLI 1m0wA 7 :SKDQLNELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7990 # 1gxjA.15.41 read from T0287.t2k.many.frag # found chain 1gxjA in template set T0287 15 :SKDKKEKLI 1gxjA 526 :VDEKYSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7991 # 1x3zB.15.34 read from T0287.t2k.many.frag # found chain 1x3zB in template set T0287 15 :SKDKKEKLI 1x3zB 272 :NPEALAPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7992 # 1elkA.15.46 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 15 :SKDKKEKLI 1elkA 43 :TEEGPKDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7993 # 1v0jA.15.114 read from T0287.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0287)S15 (1v0jA)K115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1v0jA)Y116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)T118 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)T118 T0287 19 :KEKLI 1v0jA 119 :PEQAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=7994 # 1qkrA.16.62 read from T0287.t2k.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)K18 (1qkrA)N943 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KD 1qkrA 941 :SG T0287 19 :KEKLIE 1qkrA 944 :KRALIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=7996 # 1on2A.16.35 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 16 :KDKKEKLIE 1on2A 36 :PSSVTKMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7997 # 1szhA.16.20 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 16 :KDKKEKLIE 1szhA 35 :RNRQECCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7998 # 1r6xA.16.15 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 16 :KDKKEKLIE 1r6xA 17 :ALKKNELLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=7999 # 1uw4B.16.17 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)K18 (1uw4B)T787 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KD 1uw4B 785 :KV T0287 19 :KEKLIE 1uw4B 788 :TEKVLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8001 # 1aa7A.16.17 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1aa7A 19 :PLKAEIAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8002 # 1w8iA.16.56 read from T0287.t2k.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)K16 (1w8iA)K57 because L (left) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1w8iA 58 :LPADKFLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8003 # 1lvaA.16.30 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 16 :KDKKEKLIE 1lvaA 407 :LEETRKLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8004 # 1r7jA.16.33 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 16 :KDKKEKLIE 1r7jA 34 :YALTGRYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8005 # 1otvA.16.200 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 16 :KDKKEKLIE 1otvA 201 :AEKQNRMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8006 # 1ci4A.16.52 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 18 :KKEKLIE 1ci4A 55 :DEDLFRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8007 # 1usyA.16.143 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 16 :KDKKEKLIE 1usyA 144 :KDLHEKVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8008 # 1rzhM.16.241 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 16 :KDKKEKLIE 1rzhM 242 :GTAAERAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8009 # 1z0wA.16.188 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 16 :KDKKEKLIE 1z0wA 603 :GKKKNRLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8010 # 1g2yA.16.19 read from T0287.t2k.many.frag # found chain 1g2yA in training set T0287 16 :KDKKEKLIE 1g2yA 20 :GLSKEALIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8011 # 1yovA.16.239 read from T0287.t2k.many.frag # found chain 1yovA in template set T0287 16 :KDKKEKLIE 1yovA 237 :YKEKEDFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8012 # 1gxjA.16.42 read from T0287.t2k.many.frag # found chain 1gxjA in template set T0287 16 :KDKKEKLIE 1gxjA 527 :DEKYSLAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8013 # 1ymtA.16.22 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 16 :KDKKEKLIE 1ymtA 239 :DQVRARIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8014 # 1hw1A.16.134 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1hw1A 136 :DHADAFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8015 # 1kxu.16.142 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 16 :KDKKEKLIE 1kxu 133 :PLGQEKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8016 # 1oksA.16.17 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 16 :KDKKEKLIE 1oksA 18 :EDRKRYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8017 # 1yiiA.16.30 read from T0287.t2k.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)K16 (1yiiA)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1yiiA 33 :TDEETILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8018 # 1jr2A.16.139 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 T0287 17 :DKKEKLIE 1jr2A 120 :GNAEKLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8019 # 1q52A.16.270 read from T0287.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1q52A 272 :LVGQQLFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=8020 # 1p4xA.16.63 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 16 :KDKKEKLIE 1p4xA 64 :QSDLVQHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8021 # 1m0wA.16.7 read from T0287.t2k.many.frag # found chain 1m0wA in training set T0287 16 :KDKKEKLIE 1m0wA 8 :KDQLNELIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8022 # 1xdpA.16.68 read from T0287.t2k.many.frag # found chain 1xdpA in template set T0287 16 :KDKKEKLIE 1xdpA 70 :NSHSRHLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8023 # 1x3zB.16.35 read from T0287.t2k.many.frag # found chain 1x3zB in template set T0287 16 :KDKKEKLIE 1x3zB 273 :PEALAPLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8024 # 2d28C.16.3 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 16 :KDKKEKLIE 2d28C 4 :RSAETRIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8025 # 1zv1A.16.23 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 16 :KDKKEKLIE 1zv1A 24 :WELMPLMYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8026 # 1qkrA.17.63 read from T0287.t2k.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)K18 (1qkrA)N943 because G (3-10) conformation "forbidden" or filtered. T0287 17 :D 1qkrA 942 :G T0287 19 :KEKLIES 1qkrA 944 :KRALIQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=8028 # 1on2A.17.36 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 17 :DKKEKLIES 1on2A 37 :SSVTKMVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8029 # 1szhA.17.21 read from T0287.t2k.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)K18 (1szhA)R37 because G (3-10) conformation "forbidden" or filtered. T0287 17 :D 1szhA 36 :N T0287 19 :KEKLIES 1szhA 38 :QECCIEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8031 # 1uw4B.17.18 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 17 :DKKEKLIES 1uw4B 786 :VTTEKVLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8032 # 1r6xA.17.16 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 17 :DKKEKLIES 1r6xA 18 :LKKNELLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8033 # 1w8iA.17.57 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 17 :DKKEKLIES 1w8iA 58 :LPADKFLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8034 # 1usyA.17.144 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 17 :DKKEKLIES 1usyA 145 :DLHEKVLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8035 # 1aa7A.17.18 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 17 :DKKEKLIES 1aa7A 19 :PLKAEIAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8036 # 1r7jA.17.34 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 17 :DKKEKLIES 1r7jA 35 :ALTGRYIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8037 # 1ci4A.17.53 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 18 :KKEKLIES 1ci4A 55 :DEDLFREW Number of specific fragments extracted= 1 number of extra gaps= 1 total=8038 # 1lvaA.17.31 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 17 :DKKEKLIES 1lvaA 408 :EETRKLLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8039 # 1jr2A.17.140 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIES 1jr2A 122 :AEKLAEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8041 # 1otvA.17.201 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 17 :DKKEKLIES 1otvA 202 :EKQNRMLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8042 # 1yovA.17.240 read from T0287.t2k.many.frag # found chain 1yovA in template set T0287 17 :DKKEKLIES 1yovA 238 :KEKEDFRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8043 # 1ymtA.17.23 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 17 :DKKEKLIES 1ymtA 240 :QVRARIVGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8044 # 1z0wA.17.189 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 17 :DKKEKLIES 1z0wA 604 :KKKNRLMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8045 # 1g2yA.17.20 read from T0287.t2k.many.frag # found chain 1g2yA in training set T0287 17 :DKKEKLIES 1g2yA 21 :LSKEALIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8046 # 2d28C.17.4 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 17 :DKKEKLIES 2d28C 5 :SAETRIVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8047 # 1s9rA.17.88 read from T0287.t2k.many.frag # found chain 1s9rA in training set T0287 17 :DKKEKLIES 1s9rA 89 :EAKDKLIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8048 # 1yiiA.17.31 read from T0287.t2k.many.frag # found chain 1yiiA in training set T0287 17 :DKKEKLIES 1yiiA 33 :TDEETILKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8049 # 1q52A.17.271 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 17 :DKKEKLIES 1q52A 272 :LVGQQLFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8050 # 1kxu.17.143 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 17 :DKKEKLIES 1kxu 134 :LGQEKALEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8051 # 1oksA.17.18 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 17 :DKKEKLIES 1oksA 19 :DRKRYLMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8052 # 1rzhM.17.242 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 17 :DKKEKLIES 1rzhM 243 :TAAERAALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8053 # 1m0wA.17.8 read from T0287.t2k.many.frag # found chain 1m0wA in training set T0287 17 :DKKEKLIES 1m0wA 9 :DQLNELIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8054 # 1x3zB.17.36 read from T0287.t2k.many.frag # found chain 1x3zB in template set T0287 17 :DKKEKLIES 1x3zB 274 :EALAPLLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8055 # 1hw1A.17.135 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 17 :DKKEKLIES 1hw1A 136 :DHADAFAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8056 # 1wu7A.17.192 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)D17 (1wu7A)I193 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1wu7A)S194 because P (beta_P) conformation "forbidden" or filtered. T0287 19 :KEKLIES 1wu7A 195 :REEFVDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8057 # 1q08A.17.19 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 17 :DKKEKLIES 1q08A 62 :ESIRELLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8058 # 1gk9B.17.313 read from T0287.t2k.many.frag # found chain 1gk9B in training set T0287 17 :DKKEKLIES 1gk9B 314 :DPRRQLVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=8059 # 1on2A.18.37 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 18 :KKEKLIESL 1on2A 38 :SVTKMVQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8060 # 1uw4B.18.19 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 18 :KKEKLIESL 1uw4B 787 :TTEKVLRQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8061 # 1r6xA.18.17 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 18 :KKEKLIESL 1r6xA 19 :KKNELLSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8062 # 1r7jA.18.35 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 18 :KKEKLIESL 1r7jA 36 :LTGRYIKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=8063 # 1w8iA.18.58 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 18 :KKEKLIESL 1w8iA 59 :PADKFLEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8064 # 1lvaA.18.32 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 18 :KKEKLIESL 1lvaA 409 :ETRKLLQSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8065 # 1szhA.18.22 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 18 :KKEKLIESL 1szhA 37 :RQECCIEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8066 # 1qkrA.18.64 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 18 :KKEKLIESL 1qkrA 943 :NKRALIQCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8067 # 1usyA.18.145 read from T0287.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)K18 (1usyA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1usyA 147 :HEKVLNLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8068 # 1aa7A.18.19 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 18 :KKEKLIESL 1aa7A 20 :LKAEIAQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8069 # 1jr2A.18.141 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1jr2A 122 :AEKLAEYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8070 # 2d28C.18.5 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 18 :KKEKLIESL 2d28C 6 :AETRIVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8071 # 1otvA.18.202 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 18 :KKEKLIESL 1otvA 203 :KQNRMLEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8072 # 1ci4A.18.54 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 18 :KKEKLIESL 1ci4A 55 :DEDLFREWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8073 # 1i58A.18.103 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 18 :KKEKLIESL 1i58A 455 :DKEKIIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8074 # 1yovA.18.241 read from T0287.t2k.many.frag # found chain 1yovA in template set T0287 18 :KKEKLIESL 1yovA 239 :EKEDFRDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8075 # 1s9rA.18.89 read from T0287.t2k.many.frag # found chain 1s9rA in training set T0287 18 :KKEKLIESL 1s9rA 90 :AKDKLIEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8076 # 1sflA.18.112 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 18 :KKEKLIESL 1sflA 113 :KHQRIITHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8077 # 1q52A.18.272 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 18 :KKEKLIESL 1q52A 273 :VGQQLFAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8078 # 1z0wA.18.190 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 18 :KKEKLIESL 1z0wA 605 :KKNRLMSKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8079 # 1kxu.18.144 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 18 :KKEKLIESL 1kxu 135 :GQEKALEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8080 # 2ahrA.18.170 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 18 :KKEKLIESL 2ahrA 168 :YIYLFIEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8081 # 1p4xA.18.65 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 18 :KKEKLIESL 1p4xA 66 :DLVQHIKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8082 # 1ctf.18.17 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 18 :KKEKLIESL 1ctf 64 :NKVAVIKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8083 # 1ymtA.18.24 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 18 :KKEKLIESL 1ymtA 241 :VRARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8084 # 1wu7A.18.193 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 18 :KKEKLIESL 1wu7A 194 :SREEFVDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8085 # 1yvrA.18.220 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 18 :KKEKLIESL 1yvrA 221 :ETEKVLKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8086 # 1m0wA.18.9 read from T0287.t2k.many.frag # found chain 1m0wA in training set T0287 18 :KKEKLIESL 1m0wA 10 :QLNELIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8087 # 1yiiA.18.32 read from T0287.t2k.many.frag # found chain 1yiiA in training set T0287 18 :KKEKLIESL 1yiiA 34 :DEETILKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8088 # 1dc1A.18.89 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 18 :KKEKLIESL 1dc1A 90 :DKKESINNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8089 # 1on2A.19.38 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 19 :KEKLIESLQ 1on2A 39 :VTKMVQKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8090 # 1uw4B.19.20 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 19 :KEKLIESLQ 1uw4B 788 :TEKVLRQMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8091 # 1w8iA.19.59 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 19 :KEKLIESLQ 1w8iA 60 :ADKFLEGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8092 # 2d28C.19.6 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 19 :KEKLIESLQ 2d28C 7 :ETRIVEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8093 # 1r7jA.19.36 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 19 :KEKLIESLQ 1r7jA 37 :TGRYIKMLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8094 # 1r6xA.19.18 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 19 :KEKLIESLQ 1r6xA 20 :KNELLSEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8095 # 1lvaA.19.33 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 19 :KEKLIESLQ 1lvaA 410 :TRKLLQSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8096 # 1szhA.19.23 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 19 :KEKLIESLQ 1szhA 38 :QECCIEIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8097 # 1aa7A.19.20 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 19 :KEKLIESLQ 1aa7A 21 :KAEIAQRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8098 # 1jr2A.19.142 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 19 :KEKLIESLQ 1jr2A 122 :AEKLAEYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8099 # 1ci4A.19.55 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 19 :KEKLIESLQ 1ci4A 56 :EDLFREWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8100 # 2ahrA.19.171 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 19 :KEKLIESLQ 2ahrA 169 :IYLFIEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8101 # 1i58A.19.104 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 19 :KEKLIESLQ 1i58A 456 :KEKIIRKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8102 # 1sflA.19.113 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 19 :KEKLIESLQ 1sflA 114 :HQRIITHLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8103 # 1jkeA.19.41 read from T0287.t2k.many.frag # found chain 1jkeA in training set T0287 19 :KEKLIESLQ 1jkeA 42 :ANRLCERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8104 # 2fnuA.19.297 read from T0287.t2k.many.frag # found chain 2fnuA in template set T0287 19 :KEKLIESLQ 2fnuA 298 :KKLILESLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8105 # 1usyA.19.146 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 19 :KEKLIESLQ 1usyA 147 :HEKVLNLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=8106 # 1r71A.19.23 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1r71A)A140 T0287 20 :EKLIESLQ 1r71A 141 :DQVIENLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8107 # 1ctf.19.18 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 19 :KEKLIESLQ 1ctf 65 :KVAVIKAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8108 # 1otvA.19.203 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 19 :KEKLIESLQ 1otvA 204 :QNRMLEILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8109 # 1yovA.19.242 read from T0287.t2k.many.frag # found chain 1yovA in template set T0287 19 :KEKLIESLQ 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8110 # 1dc1A.19.90 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 19 :KEKLIESLQ 1dc1A 91 :KKESINNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8111 # 1wu7A.19.194 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 19 :KEKLIESLQ 1wu7A 195 :REEFVDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8112 # 1q52A.19.273 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 19 :KEKLIESLQ 1q52A 274 :GQQLFAGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8113 # 1s9rA.19.90 read from T0287.t2k.many.frag # found chain 1s9rA in training set T0287 19 :KEKLIESLQ 1s9rA 91 :KDKLIEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8114 # 1p4xA.19.66 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 19 :KEKLIESLQ 1p4xA 67 :LVQHIKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8115 # 1qkrA.19.65 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 19 :KEKLIESLQ 1qkrA 944 :KRALIQCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8116 # 2b0tA.19.90 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 19 :KEKLIESLQ 2b0tA 91 :LKAAIKELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8117 # 1kxu.19.145 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 19 :KEKLIESLQ 1kxu 136 :QEKALEQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8118 # 1ymtA.19.25 read from T0287.t2k.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)Q27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ymtA)Q259 T0287 19 :KEKLIESL 1ymtA 242 :RARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8119 # 1on2A.20.39 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 20 :EKLIESLQE 1on2A 40 :TKMVQKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8120 # 1uw4B.20.21 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 20 :EKLIESLQE 1uw4B 789 :EKVLRQMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8121 # 2d28C.20.7 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 20 :EKLIESLQE 2d28C 8 :TRIVEALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8122 # 1w8iA.20.60 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 20 :EKLIESLQE 1w8iA 61 :DKFLEGFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8123 # 1r7jA.20.37 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 20 :EKLIESLQE 1r7jA 38 :GRYIKMLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8124 # 2ahrA.20.172 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 20 :EKLIESLQE 2ahrA 170 :YLFIEALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8125 # 1i58A.20.105 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 20 :EKLIESLQE 1i58A 457 :EKIIRKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8126 # 1lvaA.20.34 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 20 :EKLIESLQE 1lvaA 411 :RKLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8127 # 1sflA.20.114 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 20 :EKLIESLQE 1sflA 115 :QRIITHLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8128 # 1r6xA.20.19 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 20 :EKLIESLQE 1r6xA 21 :NELLSEAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8129 # 1r71A.20.24 read from T0287.t2k.many.frag # found chain 1r71A in template set T0287 20 :EKLIESLQE 1r71A 141 :DQVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8130 # 1ci4A.20.56 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 20 :EKLIESLQE 1ci4A 57 :DLFREWLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8131 # 1szhA.20.24 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 20 :EKLIESLQE 1szhA 39 :ECCIEIMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8132 # 1aa7A.20.21 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 20 :EKLIESLQE 1aa7A 22 :AEIAQRLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=8133 # 1dc1A.20.91 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 20 :EKLIESLQE 1dc1A 92 :KESINNLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8134 # 2fnuA.20.298 read from T0287.t2k.many.frag # found chain 2fnuA in template set T0287 20 :EKLIESLQE 2fnuA 299 :KLILESLHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8135 # 1jr2A.20.143 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 20 :EKLIESLQE 1jr2A 123 :EKLAEYICS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8136 # 1jkeA.20.42 read from T0287.t2k.many.frag # found chain 1jkeA in training set T0287 20 :EKLIESLQE 1jkeA 43 :NRLCERVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8137 # 1s9rA.20.91 read from T0287.t2k.many.frag # found chain 1s9rA in training set T0287 20 :EKLIESLQE 1s9rA 92 :DKLIEEFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8138 # 1ctf.20.19 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 20 :EKLIESLQE 1ctf 66 :VAVIKAVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8139 # 2b0tA.20.91 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 20 :EKLIESLQE 2b0tA 92 :KAAIKELQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8140 # 1p4xA.20.67 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 20 :EKLIESLQE 1p4xA 68 :VQHIKVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8141 # 1kxu.20.146 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 20 :EKLIESLQE 1kxu 137 :EKALEQILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8142 # 1wu7A.20.195 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 20 :EKLIESLQE 1wu7A 196 :EEFVDQLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8143 # 1q52A.20.274 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 20 :EKLIESLQE 1q52A 275 :QQLFAGEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8144 # 1xg8A.20.66 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 20 :EKLIESLQE 1xg8A 58 :LQFIERIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8145 # 1oi7A.20.258 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 20 :EKLIESLQE 1oi7A 259 :ESKLRAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8146 # 1qvzA.20.81 read from T0287.t2k.many.frag # found chain 1qvzA in template set T0287 20 :EKLIESLQE 1qvzA 82 :NKTLAKIKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8147 # 1otvA.20.204 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 20 :EKLIESLQE 1otvA 205 :NRMLEILQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8148 # 1pu6A.20.48 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 20 :EKLIESLQE 1pu6A 49 :LKSLENLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8149 # 2d28C.21.8 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 21 :KLIESLQEN 2d28C 9 :RIVEALLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=8150 # 1on2A.21.40 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 21 :KLIESLQEN 1on2A 41 :KMVQKLDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8151 # 1uw4B.21.22 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1uw4B 790 :KVLRQMRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8152 # 1w8iA.21.61 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 21 :KLIESLQEN 1w8iA 62 :KFLEGFVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=8153 # 1r7jA.21.38 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 21 :KLIESLQEN 1r7jA 39 :RYIKMLMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8154 # 1r71A.21.25 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)N29 (1r71A)N150 because L (left) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1r71A 142 :QVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=8155 # 1i58A.21.106 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 21 :KLIESLQEN 1i58A 458 :KIIRKAIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8156 # 1sflA.21.115 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 21 :KLIESLQEN 1sflA 116 :RIITHLQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8157 # 2ahrA.21.173 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 21 :KLIESLQEN 2ahrA 171 :LFIEALAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8158 # 1aa7A.21.22 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 21 :KLIESLQEN 1aa7A 23 :EIAQRLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8159 # 2fnuA.21.299 read from T0287.t2k.many.frag # found chain 2fnuA in template set T0287 21 :KLIESLQEN 2fnuA 300 :LILESLHKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8160 # 1szhA.21.25 read from T0287.t2k.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)N29 (1szhA)G48 because L (left) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1szhA 40 :CCIEIMKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=8161 # 1ci4A.21.57 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 21 :KLIESLQEN 1ci4A 58 :LFREWLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8162 # 1r6xA.21.20 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 21 :KLIESLQEN 1r6xA 22 :ELLSEAQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8163 # 1pu6A.21.49 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 21 :KLIESLQEN 1pu6A 50 :KSLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8164 # 1jkeA.21.43 read from T0287.t2k.many.frag # found chain 1jkeA in training set T0287 21 :KLIESLQEN 1jkeA 44 :RLCERVLGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8165 # 1sd4A.21.28 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 21 :KLIESLQEN 1sd4A 29 :EIVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8166 # 1jr2A.21.144 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)N29 (1jr2A)R132 because E (beta_S) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1jr2A 124 :KLAEYICS Number of specific fragments extracted= 1 number of extra gaps= 1 total=8167 # 1ctf.21.20 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 21 :KLIESLQEN 1ctf 67 :AVIKAVRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8168 # 1yj7A.21.48 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 21 :KLIESLQEN 1yj7A 68 :RAITILNNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8169 # 2b0tA.21.92 read from T0287.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)N29 (2b0tA)Q101 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 2b0tA 93 :AAIKELQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=8170 # 1lvaA.21.35 read from T0287.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)N29 (1lvaA)A420 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1lvaA 412 :KLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=8171 # 1oi7A.21.259 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 21 :KLIESLQEN 1oi7A 260 :SKLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8172 # 1dc1A.21.92 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 21 :KLIESLQEN 1dc1A 93 :ESINNLIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8173 # 2bwbA.21.8 read from T0287.t2k.many.frag # found chain 2bwbA in template set T0287 21 :KLIESLQEN 2bwbA 334 :HQLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8174 # 1qvzA.21.82 read from T0287.t2k.many.frag # found chain 1qvzA in template set T0287 21 :KLIESLQEN 1qvzA 83 :KTLAKIKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8175 # 1l0bA.21.75 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1l0bA 1664 :WVIKSIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8176 # 2tpt.21.5 read from T0287.t2k.many.frag # found chain 2tpt in template set T0287 21 :KLIESLQEN 2tpt 6 :EIIRKKRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8177 # 1uj8A.21.41 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 21 :KLIESLQEN 1uj8A 42 :DMHQWICDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8178 # 1jalA.21.141 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 21 :KLIESLQEN 1jalA 142 :RAIQRLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8179 # 2d28C.22.9 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2d28C 10 :IVEALLER Number of specific fragments extracted= 1 number of extra gaps= 1 total=8180 # 1on2A.22.41 read from T0287.t2k.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)N29 (1on2A)D49 because G (3-10) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1on2A 42 :MVQKLDK T0287 30 :E 1on2A 50 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=8182 # 1uw4B.22.23 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 22 :LIESLQENE 1uw4B 791 :VLRQMRKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8183 # 1i58A.22.107 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1i58A 459 :IIRKAIEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8184 # 1yj7A.22.49 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)N29 (1yj7A)N76 because G (3-10) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1yj7A 69 :AITILNN T0287 30 :E 1yj7A 77 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=8186 # 1w8iA.22.62 read from T0287.t2k.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1w8iA 63 :FLEGFVES Number of specific fragments extracted= 1 number of extra gaps= 1 total=8187 # 1l0bA.22.76 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1l0bA 1665 :VIKSIQE T0287 30 :E 1l0bA 1673 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8189 # 1r71A.22.26 read from T0287.t2k.many.frag # found chain 1r71A in template set T0287 22 :LIESLQENE 1r71A 143 :VIENLQRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8190 # 1r7jA.22.39 read from T0287.t2k.many.frag # found chain 1r7jA in training set Warning: unaligning (T0287)E30 (1r7jA)E48 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1r7jA 40 :YIKMLMDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8191 # 1sd4A.22.29 read from T0287.t2k.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1sd4A 30 :IVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=8192 # 1sflA.22.116 read from T0287.t2k.many.frag # found chain 1sflA in template set Warning: unaligning (T0287)N29 (1sflA)Y124 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1sflA)N125 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1sflA 117 :IITHLQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8193 # 2ahrA.22.174 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 22 :LIESLQENE 2ahrA 172 :FIEALAKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8194 # 2fnuA.22.300 read from T0287.t2k.many.frag # found chain 2fnuA in template set T0287 22 :LIESLQENE 2fnuA 301 :ILESLHKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8195 # 1oi7A.22.260 read from T0287.t2k.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1oi7A 261 :KLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=8196 # 1pu6A.22.50 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 22 :LIESLQENE 1pu6A 51 :SLENLKNAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8197 # 1ctf.22.21 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 22 :LIESLQENE 1ctf 68 :VIKAVRGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8198 # 2b0tA.22.93 read from T0287.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)E30 (2b0tA)G102 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2b0tA 94 :AIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8199 # 1szhA.22.26 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 22 :LIESLQENE 1szhA 41 :CIEIMKFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8200 # 1ci4A.22.58 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 22 :LIESLQENE 1ci4A 59 :FREWLKDTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8201 # 1r6xA.22.21 read from T0287.t2k.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)E28 (1r6xA)S29 because P (beta_P) conformation "forbidden" or filtered. T0287 22 :LIESLQ 1r6xA 23 :LLSEAQ T0287 29 :NE 1r6xA 30 :SD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8203 # 1aa7A.22.23 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 22 :LIESLQENE 1aa7A 24 :IAQRLEDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8204 # 2tpt.22.6 read from T0287.t2k.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQE 2tpt 7 :IIRKKRD T0287 30 :E 2tpt 15 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=8206 # 1jr2A.22.145 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 22 :LIESLQENE 1jr2A 125 :LAEYICSRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8207 # 1nuuA.22.222 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1nuuA 223 :VITYIKDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=8208 # 2cz1A.22.24 read from T0287.t2k.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2cz1A 25 :LFRALDGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8209 # 2bwbA.22.9 read from T0287.t2k.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2bwbA 335 :QLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=8210 # 1lvaA.22.36 read from T0287.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)E30 (1lvaA)G421 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1lvaA 413 :LLQSMAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=8211 # 1uj8A.22.42 read from T0287.t2k.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1uj8A 43 :MHQWICD T0287 30 :E 1uj8A 51 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=8213 # 1jalA.22.142 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 22 :LIESLQENE 1jalA 143 :AIQRLQKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8214 # 1dc1A.22.93 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 22 :LIESLQENE 1dc1A 94 :SINNLIENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8215 # 2d28C.23.10 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2d28C 11 :VEALLER T0287 31 :L 2d28C 19 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=8217 # 1uw4B.23.24 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 23 :IESLQENEL 1uw4B 792 :LRQMRKLPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=8218 # 1on2A.23.42 read from T0287.t2k.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)E30 (1on2A)E50 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1on2A 43 :VQKLDKD T0287 31 :L 1on2A 51 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=8220 # 1i58A.23.108 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1i58A 460 :IRKAIEK T0287 31 :L 1i58A 468 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=8222 # 1yj7A.23.50 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1yj7A 70 :ITILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=8224 # 1l0bA.23.77 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1l0bA 1666 :IKSIQE T0287 30 :EL 1l0bA 1673 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8226 # 1w8iA.23.63 read from T0287.t2k.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1w8iA 64 :LEGFVES T0287 31 :L 1w8iA 72 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=8228 # 1r71A.23.27 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)N29 (1r71A)N150 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQE 1r71A 144 :IENLQR T0287 30 :EL 1r71A 151 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8230 # 1sd4A.23.30 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 23 :IESLQENEL 1sd4A 31 :VVEIQKYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8231 # 1nuuA.23.223 read from T0287.t2k.many.frag # found chain 1nuuA in template set T0287 23 :IESLQENEL 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8232 # 1pu6A.23.51 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1pu6A 52 :LENLKNA T0287 31 :L 1pu6A 60 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=8234 # 1oi7A.23.261 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 23 :IESLQENEL 1oi7A 262 :LRAFAEAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8235 # 2ahrA.23.175 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 23 :IESLQENEL 2ahrA 173 :IEALAKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8236 # 1uj8A.23.43 read from T0287.t2k.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQE 1uj8A 44 :HQWICD T0287 30 :EL 1uj8A 51 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=8238 # 1ctf.23.22 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 23 :IESLQENEL 1ctf 69 :IKAVRGATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8239 # 2bwbA.23.10 read from T0287.t2k.many.frag # found chain 2bwbA in template set T0287 23 :IESLQENEL 2bwbA 336 :LRQLNDMGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8240 # 1r7jA.23.40 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 23 :IESLQENEL 1r7jA 41 :IKMLMDLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8241 # 2cz1A.23.25 read from T0287.t2k.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)N29 (2cz1A)K32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 2cz1A 26 :FRALDG T0287 31 :L 2cz1A 34 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=8243 # 1sflA.23.117 read from T0287.t2k.many.frag # found chain 1sflA in template set Warning: unaligning (T0287)E30 (1sflA)N125 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1sflA 118 :ITHLQQY T0287 31 :L 1sflA 126 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8245 # 1ci4A.23.59 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 23 :IESLQENEL 1ci4A 60 :REWLKDTCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8246 # 1jalA.23.143 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 23 :IESLQENEL 1jalA 144 :IQRLQKRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8247 # 2fnuA.23.301 read from T0287.t2k.many.frag # found chain 2fnuA in template set Warning: unaligning (T0287)N29 (2fnuA)R308 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2fnuA)G309 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 2fnuA 302 :LESLHK T0287 31 :L 2fnuA 310 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=8249 # 1aa7A.23.24 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 23 :IESLQENEL 1aa7A 25 :AQRLEDVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8250 # 2hddA.23.18 read from T0287.t2k.many.frag # found chain 2hddA in template set Warning: unaligning (T0287)N29 (2hddA)N23 because E (beta_S) conformation "forbidden" or filtered. T0287 23 :IESLQE 2hddA 17 :KREFNE T0287 30 :EL 2hddA 24 :RY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8252 # 2tpt.23.7 read from T0287.t2k.many.frag # found chain 2tpt in template set T0287 23 :IESLQENEL 2tpt 8 :IRKKRDGHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8253 # 1xg8A.23.69 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)N29 (1xg8A)D67 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1xg8A 61 :IERIEQ T0287 30 :EL 1xg8A 68 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8255 # 2ak3A.23.55 read from T0287.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2ak3A)K62 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQE 2ak3A 55 :KTFIDQ T0287 31 :L 2ak3A 63 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=8257 # 1h5uA.23.741 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 23 :IESLQENEL 1h5uA 742 :IEQLSSGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8258 # 1k3xA.23.139 read from T0287.t2k.many.frag # found chain 1k3xA in training set T0287 23 :IESLQENEL 1k3xA 140 :KERLLSPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8259 # 1jkeA.23.45 read from T0287.t2k.many.frag # found chain 1jkeA in training set T0287 23 :IESLQENEL 1jkeA 46 :CERVLGYRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8260 # 2d28C.24.11 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2d28C 12 :EALLER T0287 31 :LL 2d28C 19 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8262 # 1i58A.24.109 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 24 :ESLQENEL 1i58A 461 :RKAIEKGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8263 # 1uw4B.24.25 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 24 :ESLQE 1uw4B 793 :RQMRK T0287 30 :ELL 1uw4B 799 :PWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=8265 # 1yj7A.24.51 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1yj7A 71 :TILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=8267 # 1on2A.24.43 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 24 :ESLQENELL 1on2A 44 :QKLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8268 # 1l0bA.24.78 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 1l0bA 1667 :KSIQE T0287 30 :ELL 1l0bA 1673 :KLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8270 # 1oi7A.24.262 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 24 :ESLQENELL 1oi7A 263 :RAFAEAGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8271 # 1pu6A.24.52 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1pu6A 53 :ENLKNA T0287 31 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8273 # 1nuuA.24.224 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQENEL 1nuuA 225 :TYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8274 # 2bwbA.24.11 read from T0287.t2k.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2bwbA 337 :RQLNDM T0287 31 :LL 2bwbA 344 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8276 # 1r71A.24.28 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)N29 (1r71A)N150 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQE 1r71A 145 :ENLQR T0287 30 :ELL 1r71A 151 :ELT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8278 # 1whsA.24.196 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1whsA 190 :EFWWNH T0287 31 :LL 1whsA 197 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8280 # 1uj8A.24.44 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 24 :ESLQENELL 1uj8A 45 :QWICDLEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8281 # 1w8iA.24.64 read from T0287.t2k.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1w8iA 65 :EGFVES T0287 31 :LL 1w8iA 72 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8283 # 1r7jA.24.41 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 24 :ESLQENELL 1r7jA 42 :KMLMDLEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=8284 # 1u20A.24.186 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)N29 (1u20A)L192 because G (3-10) conformation "forbidden" or filtered. T0287 24 :ESLQE 1u20A 187 :YALRS T0287 30 :ELL 1u20A 193 :KLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8286 # 1ctf.24.23 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 24 :ESLQENELL 1ctf 70 :KAVRGATGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8287 # 1sd4A.24.31 read from T0287.t2k.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1sd4A)V40 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1sd4A 32 :VEIQKY T0287 31 :L 1sd4A 39 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=8289 # 1jalA.24.144 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 24 :ESLQENELL 1jalA 145 :QRLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8290 # 2ak3A.24.56 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 24 :ESLQENELL 2ak3A 56 :TFIDQGKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8291 # 2cz1A.24.26 read from T0287.t2k.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2cz1A 27 :RALDGK T0287 31 :LL 2cz1A 34 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8293 # 2fnuA.24.302 read from T0287.t2k.many.frag # found chain 2fnuA in template set Warning: unaligning (T0287)E30 (2fnuA)G309 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2fnuA 303 :ESLHKR T0287 31 :LL 2fnuA 310 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8295 # 1ig0A.24.106 read from T0287.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0287)N29 (1ig0A)N112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1ig0A)K113 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQE 1ig0A 107 :KYYRK T0287 31 :LL 1ig0A 114 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8297 # 2tpt.24.8 read from T0287.t2k.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 2tpt 9 :RKKRD T0287 30 :ELL 2tpt 15 :HAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8299 # 1fiuA.24.13 read from T0287.t2k.many.frag # found chain 1fiuA in training set T0287 24 :ESLQENELL 1fiuA 14 :KKLLDGNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8300 # 2ahrA.24.176 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 24 :ESLQENELL 2ahrA 174 :EALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8301 # 1h5uA.24.742 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 24 :ESLQENELL 1h5uA 743 :EQLSSGFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8302 # 1s7zA.24.20 read from T0287.t2k.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1s7zA 20 :ENIRYD T0287 31 :LL 1s7zA 27 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8304 # 1qvzA.24.85 read from T0287.t2k.many.frag # found chain 1qvzA in template set T0287 24 :ESLQENELL 1qvzA 86 :AKIKTPKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8305 # 1ci4A.24.60 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 24 :ESLQENELL 1ci4A 61 :EWLKDTCGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8306 # 2d28C.25.12 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d28C)K21 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQEN 2d28C 13 :ALLER T0287 31 :LL 2d28C 19 :RL Number of specific fragments extracted= 2 number of extra gaps= 2 total=8308 # 1i58A.25.110 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQEN 1i58A 462 :KAIEK T0287 31 :L 1i58A 468 :L T0287 33 :N 1i58A 470 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=8311 # 1whsA.25.197 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1whsA 191 :FWWNH T0287 31 :LLN 1whsA 197 :IVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8313 # 1nuuA.25.225 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQENEL 1nuuA 226 :YIKDHGL T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=8315 # 1oi7A.25.263 read from T0287.t2k.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 1oi7A 264 :AFAEA T0287 31 :LLN 1oi7A 270 :IPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8317 # 1pu6A.25.53 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENELL 1pu6A 54 :NLKNAFIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8318 # 1yj7A.25.52 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 25 :SLQEN 1yj7A 72 :ILNNN T0287 31 :L 1yj7A 78 :F T0287 33 :N 1yj7A 80 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=8321 # 1u20A.25.187 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1u20A 188 :ALRSL T0287 31 :LLN 1u20A 194 :LLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8323 # 2bwbA.25.12 read from T0287.t2k.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 2bwbA 338 :QLNDM T0287 31 :LLN 2bwbA 344 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8325 # 1l0bA.25.79 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1l0bA)S1676 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQE 1l0bA 1668 :SIQE T0287 30 :ELL 1l0bA 1673 :KLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=8327 # 1uw4B.25.26 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 25 :SLQENELLN 1uw4B 794 :QMRKLPWQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8328 # 1jalA.25.145 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 25 :SLQENELLN 1jalA 146 :RLQKRAKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8329 # 2ahrA.25.177 read from T0287.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 T0287 25 :SLQENELL 2ahrA 175 :ALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8330 # 1fzcA.25.18 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 25 :SLQENELLN 1fzcA 129 :KVQHIQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8331 # 1on2A.25.44 read from T0287.t2k.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)N33 (1on2A)I53 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENELL 1on2A 45 :KLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8332 # 2ak3A.25.57 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 25 :SLQENELLN 2ak3A 57 :FIDQGKLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8333 # 1s7zA.25.21 read from T0287.t2k.many.frag # found chain 1s7zA in template set T0287 25 :SLQENELLN 1s7zA 21 :NIRYDDIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8334 # 1hynP.25.137 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1hynP 138 :RFIFE T0287 31 :LLN 1hynP 144 :QIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8336 # 1uj8A.25.45 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 25 :SLQENELLN 1uj8A 46 :WICDLEDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8337 # 1fiuA.25.14 read from T0287.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)N29 (1fiuA)G19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQE 1fiuA 15 :KLLD T0287 31 :LLN 1fiuA 21 :ILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8339 # 1h5uA.25.743 read from T0287.t2k.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)N29 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQE 1h5uA 744 :QLSS T0287 30 :ELLN 1h5uA 749 :FFSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=8341 # 2ao9A.25.33 read from T0287.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 25 :SLQENEL 2ao9A 34 :LLVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8342 # 1ctf.25.24 read from T0287.t2k.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQENE 1ctf 71 :AVRGAT T0287 32 :LN 1ctf 78 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=8344 # 1vjrA.25.68 read from T0287.t2k.many.frag # found chain 1vjrA in template set Warning: unaligning (T0287)E30 (1vjrA)G62 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1vjrA 57 :KLRNM T0287 31 :LLN 1vjrA 63 :VDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8346 # 1go3F.25.39 read from T0287.t2k.many.frag # found chain 1go3F in training set T0287 25 :SLQENELLN 1go3F 40 :YLQKFAKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8347 # 2hddA.25.20 read from T0287.t2k.many.frag # found chain 2hddA in template set Warning: unaligning (T0287)N33 (2hddA)T27 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQENELL 2hddA 19 :EFNENRYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8348 # 2tpt.25.9 read from T0287.t2k.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQE 2tpt 10 :KKRD T0287 30 :ELLN 2tpt 15 :HALS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8350 # 2cz1A.25.27 read from T0287.t2k.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)N29 (2cz1A)K32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQE 2cz1A 28 :ALDG T0287 31 :LLN 2cz1A 34 :LVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=8352 # 1cy5A.25.27 read from T0287.t2k.many.frag # found chain 1cy5A in training set T0287 25 :SLQENELLN 1cy5A 28 :HMISDGFLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8353 # 2b8nA.25.227 read from T0287.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)E30 (2b8nA)G221 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 2b8nA 216 :VLEKY T0287 31 :LLN 2b8nA 222 :IET Number of specific fragments extracted= 2 number of extra gaps= 1 total=8355 # 1whsA.26.198 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1whsA 192 :WWNH T0287 31 :LLNT 1whsA 197 :IVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8357 # 1i58A.26.111 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1i58A)D470 because E (beta_S) conformation "forbidden" or filtered. T0287 26 :LQENEL 1i58A 463 :AIEKGL T0287 34 :T 1i58A 471 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=8359 # 2d28C.26.13 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 26 :LQENELLNT 2d28C 14 :LLERRRLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8360 # 1u20A.26.188 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1u20A 189 :LRSL T0287 31 :LLNT 1u20A 194 :LLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8362 # 1pu6A.26.54 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQEN 1pu6A 55 :LKNA T0287 31 :LL 1pu6A 60 :IL T0287 34 :T 1pu6A 63 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=8365 # 1hynP.26.138 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 26 :LQENELLNT 1hynP 139 :FIFEDQIRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8366 # 1nuuA.26.226 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 26 :LQEN 1nuuA 227 :IKDH T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=8368 # 1fiuA.26.15 read from T0287.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQENELL 1fiuA 16 :LLDGNIL T0287 34 :T 1fiuA 24 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=8370 # 1cy5A.26.28 read from T0287.t2k.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1cy5A 29 :MISD T0287 31 :LLNT 1cy5A 34 :FLTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8372 # 1l0bA.26.80 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1l0bA)K1673 because E (beta_S) conformation "forbidden" or filtered. T0287 26 :LQE 1l0bA 1669 :IQE T0287 31 :LLNT 1l0bA 1674 :LLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8374 # 2ahrA.26.178 read from T0287.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 26 :LQENELL 2ahrA 176 :LAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8375 # 1yj7A.26.53 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 26 :LQENEL 1yj7A 73 :LNNNGF T0287 33 :NT 1yj7A 80 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8377 # 1oi7A.26.264 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 26 :LQENELLNT 1oi7A 265 :FAEAGIPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8378 # 1fzcA.26.19 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 26 :LQENELLNT 1fzcA 130 :VQHIQLLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8379 # 2ak3A.26.58 read from T0287.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 26 :LQE 2ak3A 58 :IDQ T0287 30 :ELLNT 2ak3A 62 :KLIPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8381 # 1jalA.26.146 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 26 :LQENELLNT 1jalA 147 :LQKRAKGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8382 # 1vfgA.26.177 read from T0287.t2k.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1vfgA 178 :AVNL T0287 31 :LLNT 1vfgA 183 :LLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8384 # 2bwbA.26.13 read from T0287.t2k.many.frag # found chain 2bwbA in template set T0287 26 :LQENELLNT 2bwbA 339 :LNDMGFFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8385 # 2etjA.26.211 read from T0287.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)N29 (2etjA)K203 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 26 :LQE 2etjA 200 :FFE T0287 31 :LLNT 2etjA 205 :LISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8387 # 1uj8A.26.46 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 26 :LQENELLNT 1uj8A 47 :ICDLEDFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8388 # 2ao9A.26.34 read from T0287.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 26 :LQENEL 2ao9A 35 :LVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8389 # 1s7zA.26.22 read from T0287.t2k.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1s7zA 22 :IRYD T0287 31 :LLNT 1s7zA 27 :IRDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8391 # 1uw4B.26.27 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 26 :LQENELLNT 1uw4B 795 :MRKLPWQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8392 # 1jg1A.26.27 read from T0287.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0287)E30 (1jg1A)G32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1jg1A)R35 because G (3-10) conformation "forbidden" or filtered. T0287 26 :LQEN 1jg1A 28 :LKAE T0287 31 :LL 1jg1A 33 :II T0287 34 :T 1jg1A 36 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=8395 # 2tpt.26.10 read from T0287.t2k.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)E30 (2tpt)H15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2tpt)S18 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 2tpt 11 :KRDG T0287 31 :LL 2tpt 16 :AL T0287 34 :T 2tpt 19 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=8398 # 1go3F.26.40 read from T0287.t2k.many.frag # found chain 1go3F in training set T0287 26 :LQENELLNT 1go3F 41 :LQKFAKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8399 # 1gqeA.26.40 read from T0287.t2k.many.frag # found chain 1gqeA in template set Warning: unaligning (T0287)T34 (1gqeA)E49 because D (zeta) conformation "forbidden" or filtered. T0287 26 :LQENELLN 1gqeA 41 :LEQPDVWN Number of specific fragments extracted= 1 number of extra gaps= 1 total=8400 # 1ctf.26.25 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 26 :LQENELLNT 1ctf 72 :VRGATGLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8401 # 2d3dA.26.52 read from T0287.t2k.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 2d3dA 488 :LEKK T0287 31 :LLNT 2d3dA 493 :VLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8403 # 1ci4A.26.62 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 26 :LQENE 1ci4A 63 :LKDTC T0287 32 :LNT 1ci4A 69 :ANA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8405 # 1whsA.27.199 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1whsA 193 :WNH T0287 31 :LLNTD 1whsA 197 :IVSDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8407 # 1hynP.27.139 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1hynP 140 :IFE T0287 31 :LLNTD 1hynP 144 :QIRPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=8409 # 1u20A.27.189 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1u20A 190 :RSL T0287 31 :LLNTD 1u20A 194 :LLRED Number of specific fragments extracted= 2 number of extra gaps= 1 total=8411 # 1pu6A.27.55 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 27 :QENELLNTD 1pu6A 56 :KNAFILEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=8412 # 1i58A.27.112 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1i58A 464 :IEK T0287 31 :LLNTD 1i58A 468 :LIDES Number of specific fragments extracted= 2 number of extra gaps= 1 total=8414 # 1cy5A.27.29 read from T0287.t2k.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1cy5A 30 :ISD T0287 31 :LLNTD 1cy5A 34 :FLTIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8416 # 2d28C.27.14 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d28C)K21 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 2d28C 15 :LER T0287 31 :LL 2d28C 19 :RL T0287 34 :TD 2d28C 22 :DT Number of specific fragments extracted= 3 number of extra gaps= 2 total=8419 # 1u3eM.27.100 read from T0287.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1u3eM 101 :MSR T0287 31 :LLNTD 1u3eM 105 :TLNVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8421 # 1nuuA.27.227 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 27 :QENEL 1nuuA 228 :KDHGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8422 # 2etjA.27.212 read from T0287.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 2etjA 201 :FEK T0287 31 :LLNTD 2etjA 205 :LISEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=8424 # 1fzcA.27.20 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 27 :QENELLNTD 1fzcA 131 :QHIQLLQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8425 # 1fiuA.27.16 read from T0287.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1fiuA 17 :LDG T0287 31 :LLNTD 1fiuA 21 :ILATN Number of specific fragments extracted= 2 number of extra gaps= 1 total=8427 # 2d3dA.27.53 read from T0287.t2k.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 2d3dA 489 :EKK T0287 31 :LLNTD 2d3dA 493 :VLALG Number of specific fragments extracted= 2 number of extra gaps= 1 total=8429 # 1kicA.27.102 read from T0287.t2k.many.frag # found chain 1kicA in training set T0287 27 :QENELLNTD 1kicA 91 :DDMPILNIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8430 # 2ahrA.27.179 read from T0287.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 Warning: unaligning (T0287)D35 (2ahrA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 27 :QENELL 2ahrA 177 :AKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8431 # 1l0bA.27.81 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1l0bA)K1673 because E (beta_S) conformation "forbidden" or filtered. T0287 27 :QE 1l0bA 1670 :QE T0287 31 :LLNTD 1l0bA 1674 :LLSVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=8433 # 2ak3A.27.59 read from T0287.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 27 :QE 2ak3A 59 :DQ T0287 30 :ELLNTD 2ak3A 62 :KLIPDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8435 # 1vfgA.27.178 read from T0287.t2k.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)N33 (1vfgA)K185 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (1vfgA)A187 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QENELL 1vfgA 179 :VNLGLL T0287 34 :T 1vfgA 186 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=8437 # 1oi7A.27.265 read from T0287.t2k.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1oi7A 266 :AEA T0287 31 :LLNTD 1oi7A 270 :IPVAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8439 # 1qqfA.27.22 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)Q27 (1qqfA)E1032 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 28 :ENELL 1qqfA 1033 :QWEKF T0287 35 :D 1qqfA 1040 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=8441 # 1utg.27.42 read from T0287.t2k.many.frag # found chain 1utg in training set T0287 27 :QENELLNTD 1utg 43 :KVLDSLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8442 # 1uj8A.27.47 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 27 :QENELLNTD 1uj8A 48 :CDLEDFDDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8443 # 1qvzA.27.88 read from T0287.t2k.many.frag # found chain 1qvzA in template set T0287 27 :QENELLNTD 1qvzA 89 :KTPKEVNAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8444 # 1jalA.27.147 read from T0287.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QENELL 1jalA 148 :QKRAKG T0287 34 :TD 1jalA 155 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8446 # 1s7zA.27.23 read from T0287.t2k.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1s7zA 23 :RYD T0287 31 :LLNTD 1s7zA 27 :IRDTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8448 # 1jg1A.27.28 read from T0287.t2k.many.frag # found chain 1jg1A in training set T0287 27 :QENELLNTD 1jg1A 29 :KAEGIIRSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8449 # 1m40A.27.168 read from T0287.t2k.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)N33 (1m40A)T200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 27 :QENELL 1m40A 194 :LTGELL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8450 # 2ao9A.27.35 read from T0287.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 27 :QENEL 2ao9A 36 :VENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8451 # 1gqeA.27.41 read from T0287.t2k.many.frag # found chain 1gqeA in template set Warning: unaligning (T0287)T34 (1gqeA)E49 because D (zeta) conformation "forbidden" or filtered. T0287 27 :QENELLN 1gqeA 42 :EQPDVWN T0287 35 :D 1gqeA 50 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=8453 # 1k3yA.27.105 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 T0287 27 :QENELLNT 1k3yA 107 :LLLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=8454 # 1whsA.28.200 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1whsA 194 :NH T0287 31 :LLNTDE 1whsA 197 :IVSDDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8456 # 1u20A.28.190 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 1u20A 191 :SL T0287 31 :LL 1u20A 194 :LL T0287 34 :TDE 1u20A 197 :EDQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=8459 # 1hynP.28.140 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 1hynP 141 :FE T0287 31 :LL 1hynP 144 :QI T0287 34 :TDE 1hynP 147 :PQD Number of specific fragments extracted= 3 number of extra gaps= 2 total=8462 # 1pu6A.28.56 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1pu6A 57 :NA T0287 31 :LLNTDE 1pu6A 60 :ILENDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8464 # 1u3eM.28.101 read from T0287.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u3eM)N107 because E (beta_S) conformation "forbidden" or filtered. T0287 28 :EN 1u3eM 102 :SR T0287 31 :LL 1u3eM 105 :TL T0287 34 :TDE 1u3eM 108 :VSK Number of specific fragments extracted= 3 number of extra gaps= 2 total=8467 # 2d3dA.28.54 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 28 :ENELLNTDE 2d3dA 490 :KKGVLALGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8468 # 1i58A.28.113 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :EN 1i58A 465 :EK T0287 31 :L 1i58A 468 :L T0287 33 :NTDE 1i58A 470 :DESK Number of specific fragments extracted= 3 number of extra gaps= 2 total=8471 # 1k3yA.28.106 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)N33 (1k3yA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 28 :ENELL 1k3yA 108 :LLPVC T0287 34 :T 1k3yA 114 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=8473 # 1cy5A.28.30 read from T0287.t2k.many.frag # found chain 1cy5A in training set T0287 28 :ENELLNTDE 1cy5A 31 :SDGFLTISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8474 # 1kicA.28.103 read from T0287.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0287)N29 (1kicA)M93 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :E 1kicA 92 :D T0287 30 :ELLNTDE 1kicA 94 :PILNIPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8476 # 1qqfA.28.23 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 28 :ENELL 1qqfA 1033 :QWEKF T0287 35 :DE 1qqfA 1040 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8478 # 2etjA.28.213 read from T0287.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)N29 (2etjA)K203 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 28 :E 2etjA 202 :E T0287 31 :LLNTDE 2etjA 205 :LISENR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8480 # 1fzcA.28.21 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 28 :ENELLNTDE 1fzcA 132 :HIQLLQKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8481 # 2ahrA.28.180 read from T0287.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 28 :ENELL 2ahrA 178 :KAGVK T0287 35 :DE 2ahrA 185 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=8483 # 1rr7A.28.85 read from T0287.t2k.many.frag # found chain 1rr7A in template set Warning: unaligning (T0287)N33 (1rr7A)N91 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1rr7A)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :ENELL 1rr7A 86 :IWNDF T0287 35 :DE 1rr7A 93 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=8485 # 1cr1A.28.88 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 28 :ENELLNTDE 1cr1A 359 :RVRLRQSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8486 # 1uw4B.28.29 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)E30 (1uw4B)P799 because N (gamma') conformation "forbidden" or filtered. T0287 28 :EN 1uw4B 797 :KL T0287 31 :LLNTDE 1uw4B 800 :WQDQEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8488 # 1utg.28.43 read from T0287.t2k.many.frag # found chain 1utg in training set T0287 28 :ENELLNTDE 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8489 # 1m40A.28.169 read from T0287.t2k.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 28 :ENELLN 1m40A 195 :TGELLT T0287 36 :E 1m40A 203 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=8491 # 1vfgA.28.179 read from T0287.t2k.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (1vfgA)A187 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 1vfgA 180 :NL T0287 31 :LLNT 1vfgA 183 :LLKE T0287 36 :E 1vfgA 188 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=8494 # 1gqeA.28.42 read from T0287.t2k.many.frag # found chain 1gqeA in template set T0287 28 :ENELLNTDE 1gqeA 43 :QPDVWNEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8495 # 2ak3A.28.60 read from T0287.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N33 (2ak3A)P65 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :ENELL 2ak3A 60 :QGKLI T0287 34 :TDE 2ak3A 66 :DDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8497 # 2cwyA.28.25 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 28 :ENELLNTDE 2cwyA 26 :PYWLKATGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8498 # 1fiuA.28.17 read from T0287.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :EN 1fiuA 18 :DG T0287 31 :LL 1fiuA 21 :IL T0287 34 :TDE 1fiuA 24 :TNN Number of specific fragments extracted= 3 number of extra gaps= 2 total=8501 # 1jalA.28.148 read from T0287.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :ENELL 1jalA 149 :KRAKG T0287 34 :TDE 1jalA 155 :DKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8503 # 1x2iA.28.17 read from T0287.t2k.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)L31 (1x2iA)H18 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :ENE 1x2iA 15 :GLP T0287 32 :LNTDE 1x2iA 19 :VSATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8505 # 1s7zA.28.24 read from T0287.t2k.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1s7zA 24 :YD T0287 31 :LLNTDE 1s7zA 27 :IRDTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8507 # 1uj8A.28.48 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 28 :ENELLNTDE 1uj8A 49 :DLEDFDDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8508 # 2d28C.28.15 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d28C)K21 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 2d28C 16 :ER T0287 31 :LL 2d28C 19 :RL T0287 34 :TDE 2d28C 22 :DTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=8511 # 1ix9A.28.58 read from T0287.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (1ix9A)K59 T0287 29 :NELLNTDE 1ix9A 60 :LDQLPADK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8512 # 1whsA.29.201 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1whsA 195 :H T0287 31 :LLNTDEK 1whsA 197 :IVSDDTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8514 # 1hynP.29.141 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1hynP 142 :E T0287 31 :LLNTDEK 1hynP 144 :QIRPQDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8516 # 1pu6A.29.57 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 29 :NELLNTDEK 1pu6A 58 :AFILENDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8517 # 1u20A.29.191 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)N29 (1u20A)L192 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEK 1u20A 194 :LLREDQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8518 # 1k3yA.29.107 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 29 :NELLNT 1k3yA 109 :LPVCPP T0287 37 :K 1k3yA 117 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8520 # 1u3eM.29.102 read from T0287.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u3eM 103 :R T0287 31 :LLNTDEK 1u3eM 105 :TLNVSKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8522 # 2d3dA.29.55 read from T0287.t2k.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :N 2d3dA 491 :K T0287 31 :LLNTDEK 2d3dA 493 :VLALGAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8524 # 1cr1A.29.89 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 29 :NELLNTDEK 1cr1A 360 :VRLRQSDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8525 # 2cwyA.29.26 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 29 :NELLNT 2cwyA 27 :YWLKAT T0287 36 :EK 2cwyA 34 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8527 # 1kicA.29.104 read from T0287.t2k.many.frag # found chain 1kicA in training set T0287 29 :NELLNTDEK 1kicA 93 :MPILNIPEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8528 # 1cy5A.29.31 read from T0287.t2k.many.frag # found chain 1cy5A in training set T0287 29 :NELLNTDEK 1cy5A 32 :DGFLTISEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8529 # 1vflA.29.330 read from T0287.t2k.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)E30 (1vflA)S330 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1vflA 329 :S T0287 31 :LLNTDEK 1vflA 331 :FLPEDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8531 # 1qqfA.29.24 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 29 :NELL 1qqfA 1034 :WEKF T0287 35 :DEK 1qqfA 1040 :EKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8533 # 1ix9A.29.59 read from T0287.t2k.many.frag # found chain 1ix9A in training set T0287 29 :NELLNTDEK 1ix9A 60 :LDQLPADKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8534 # 2etjA.29.214 read from T0287.t2k.many.frag # found chain 2etjA in template set T0287 29 :NELLNTDEK 2etjA 203 :KGLISENRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8535 # 1i58A.29.114 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)N29 (1i58A)K466 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 30 :EL 1i58A 467 :GL T0287 33 :NTDEK 1i58A 470 :DESKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=8537 # 1yrbA.29.180 read from T0287.t2k.many.frag # found chain 1yrbA in template set Warning: unaligning (T0287)N33 (1yrbA)S171 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NELL 1yrbA 167 :VDLL T0287 34 :TDEK 1yrbA 172 :EEEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8539 # 1d2tA.29.52 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 29 :NELLNTD 1d2tA 53 :RLLRNTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8540 # 1uptB.29.32 read from T0287.t2k.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. T0287 29 :NE 1uptB 2201 :VL T0287 32 :LNTDEK 1uptB 2204 :FPDDQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8542 # 1uw4B.29.30 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 29 :NELLNTDEK 1uw4B 798 :LPWQDQEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8543 # 1f74A.29.50 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 29 :NELLNTDEK 1f74A 51 :NFMLSTEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8544 # 1rr7A.29.86 read from T0287.t2k.many.frag # found chain 1rr7A in template set Warning: unaligning (T0287)N33 (1rr7A)N91 because G (3-10) conformation "forbidden" or filtered. T0287 29 :NELL 1rr7A 87 :WNDF T0287 34 :TDEK 1rr7A 92 :GRNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8546 # 1m40A.29.170 read from T0287.t2k.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 29 :NELLN 1m40A 196 :GELLT T0287 36 :EK 1m40A 203 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8548 # 1fzcA.29.22 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 29 :NELLNTDEK 1fzcA 133 :IQLLQKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8549 # 1x2iA.29.18 read from T0287.t2k.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)L31 (1x2iA)H18 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :NE 1x2iA 16 :LP T0287 32 :LNTDEK 1x2iA 19 :VSATLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8551 # 1u61A.29.64 read from T0287.t2k.many.frag # found chain 1u61A in template set Warning: unaligning (T0287)N33 (1u61A)T66 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NELL 1u61A 62 :TAFL T0287 34 :TDEK 1u61A 67 :EEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8553 # 1y0nA.29.6 read from T0287.t2k.many.frag # found chain 1y0nA in template set T0287 29 :NELLNTDEK 1y0nA 5 :HDLLEADTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8554 # 1vfgA.29.180 read from T0287.t2k.many.frag # found chain 1vfgA in template set T0287 29 :NELLNTDEK 1vfgA 181 :LGLLKEAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8555 # 1gqeA.29.43 read from T0287.t2k.many.frag # found chain 1gqeA in template set T0287 29 :NELLNTDEK 1gqeA 44 :PDVWNEPER Number of specific fragments extracted= 1 number of extra gaps= 0 total=8556 # 1jalA.29.149 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 29 :NELLNTDEK 1jalA 150 :RAKGGDKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8557 # 1hynP.30.142 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1hynP 144 :QIRPQDRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8558 # 2cwyA.30.27 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 2cwyA 28 :WLK T0287 34 :TDEKK 2cwyA 32 :TGEER Number of specific fragments extracted= 2 number of extra gaps= 1 total=8560 # 1k3yA.30.108 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 30 :ELLNT 1k3yA 110 :PVCPP T0287 37 :KK 1k3yA 117 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8562 # 1whsA.30.202 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1whsA 197 :IVSDDTYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=8563 # 1u3eM.30.103 read from T0287.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1u3eM 105 :TLNVSKAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8564 # 1u20A.30.192 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1u20A 193 :KLL T0287 34 :TDEKK 1u20A 197 :EDQIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=8566 # 1pu6A.30.58 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1pu6A 60 :ILENDDEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8567 # 1cr1A.30.90 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 30 :ELLNTDEKK 1cr1A 361 :RLRQSDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8568 # 2d3dA.30.56 read from T0287.t2k.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 2d3dA 493 :VL T0287 34 :TDEKK 2d3dA 496 :LGARR Number of specific fragments extracted= 2 number of extra gaps= 2 total=8570 # 1vflA.30.331 read from T0287.t2k.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)E30 (1vflA)S330 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1vflA 331 :FLPEDEKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8571 # 1qqfA.30.25 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 30 :ELL 1qqfA 1035 :EKF T0287 35 :DEKK 1qqfA 1040 :EKRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=8573 # 1yrbA.30.181 read from T0287.t2k.many.frag # found chain 1yrbA in template set Warning: unaligning (T0287)N33 (1yrbA)S171 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1yrbA 168 :DLL T0287 34 :TDEKK 1yrbA 172 :EEEKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8575 # 1ix9A.30.60 read from T0287.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)N33 (1ix9A)P64 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1ix9A 61 :DQL T0287 34 :TDEKK 1ix9A 65 :ADKKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8577 # 1kicA.30.105 read from T0287.t2k.many.frag # found chain 1kicA in training set T0287 30 :ELLNTDEKK 1kicA 94 :PILNIPENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8578 # 1uptB.30.33 read from T0287.t2k.many.frag # found chain 1uptB in training set T0287 30 :ELLNTDEKK 1uptB 2202 :LKFPDDQTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8579 # 1d2tA.30.53 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 30 :ELLNTD 1d2tA 54 :LLRNTE T0287 38 :K 1d2tA 62 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8581 # 1w33A.30.116 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 30 :ELLNTDEKK 1w33A 186 :ENLSQEESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8582 # 1f74A.30.51 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 30 :ELLNTDEKK 1f74A 52 :FMLSTEEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8583 # 1e9rA.30.195 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N33 (1e9rA)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 30 :ELL 1e9rA 266 :LFA T0287 34 :TDEKK 1e9rA 270 :SNEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8585 # 1cy5A.30.32 read from T0287.t2k.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1cy5A 34 :FLTISEEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8586 # 1uw4B.30.31 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 30 :ELLNTDEKK 1uw4B 799 :PWQDQEVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8587 # 1jalA.30.150 read from T0287.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 30 :ELL 1jalA 151 :AKG T0287 34 :TDEKK 1jalA 155 :DKEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8589 # 1g73A.30.66 read from T0287.t2k.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)E30 (1g73A)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 31 :LLN 1g73A 68 :KMN T0287 35 :DEKK 1g73A 72 :EEED Number of specific fragments extracted= 2 number of extra gaps= 2 total=8591 # 1u7kA.30.60 read from T0287.t2k.many.frag # found chain 1u7kA in template set Warning: unaligning (T0287)N33 (1u7kA)T64 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1u7kA 61 :TLL T0287 34 :TDEKK 1u7kA 65 :GEEKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=8593 # 1y0nA.30.7 read from T0287.t2k.many.frag # found chain 1y0nA in template set T0287 30 :ELLNTDEKK 1y0nA 6 :DLLEADTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8594 # 2etjA.30.215 read from T0287.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 2etjA 205 :LISENRFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8595 # 1uslA.30.138 read from T0287.t2k.many.frag # found chain 1uslA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1uslA)W132 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1uslA)W132 T0287 32 :LNTDEKK 1uslA 133 :SKAQRHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8596 # 1u84A.30.39 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 30 :ELLNTDEKK 1u84A 37 :AVYETEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8597 # 2ahmA.30.42 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 30 :ELLNTDEKK 2ahmA 43 :DILLAKDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8598 # 1ydiA.30.185 read from T0287.t2k.many.frag # found chain 1ydiA in template set T0287 30 :ELLNTDEKK 1ydiA 181 :ELTHQEHRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8599 # 2cwyA.31.28 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 31 :LLNT 2cwyA 29 :LKAT T0287 36 :EKKK 2cwyA 34 :EERR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8601 # 1hynP.31.143 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1hynP 144 :QI T0287 34 :TDEKKK 1hynP 147 :PQDREE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8603 # 1k3yA.31.109 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 31 :LLNT 1k3yA 111 :VCPP T0287 37 :KKK 1k3yA 117 :KDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8605 # 2d3dA.31.57 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 31 :LLNTDEKKK 2d3dA 493 :VLALGARRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8606 # 1cr1A.31.91 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 31 :LLNTDEKKK 1cr1A 362 :LRQSDSLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8607 # 1qqfA.31.26 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 31 :LL 1qqfA 1036 :KF T0287 35 :DEKKK 1qqfA 1040 :EKRQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8609 # 1u3eM.31.104 read from T0287.t2k.many.frag # found chain 1u3eM in template set T0287 31 :LLNTDEKKK 1u3eM 105 :TLNVSKAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8610 # 1w33A.31.117 read from T0287.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N33 (1w33A)S189 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1w33A 187 :NL T0287 34 :TDEKKK 1w33A 190 :QEESKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8612 # 1whsA.31.203 read from T0287.t2k.many.frag # found chain 1whsA in template set T0287 31 :LLNTDEKKK 1whsA 197 :IVSDDTYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8613 # 1u20A.31.193 read from T0287.t2k.many.frag # found chain 1u20A in template set T0287 31 :LLNTDEKKK 1u20A 194 :LLREDQIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8614 # 1b4fA.31.53 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 31 :LLNTDEKKK 1b4fA 54 :VTLAGHQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8615 # 1vflA.31.332 read from T0287.t2k.many.frag # found chain 1vflA in template set T0287 31 :LLNTDEKKK 1vflA 331 :FLPEDEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8616 # 1uptB.31.34 read from T0287.t2k.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1uptB)P2205 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1uptB 2204 :F T0287 34 :TDEKKK 1uptB 2206 :DDQTQK Number of specific fragments extracted= 2 number of extra gaps= 2 total=8618 # 1yrbA.31.182 read from T0287.t2k.many.frag # found chain 1yrbA in template set T0287 31 :LLNTDEKKK 1yrbA 169 :LLSEEEKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=8619 # 1ix9A.31.61 read from T0287.t2k.many.frag # found chain 1ix9A in training set T0287 31 :LLNTDEKKK 1ix9A 62 :QLPADKKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8620 # 1e9rA.31.196 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 31 :LLNTDEKKK 1e9rA 267 :FAGSNEASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8621 # 1u84A.31.40 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 31 :LLNTDEKKK 1u84A 38 :VYETEDART Number of specific fragments extracted= 1 number of extra gaps= 0 total=8622 # 1d2tA.31.54 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 31 :LLNTD 1d2tA 55 :LRNTE T0287 38 :KK 1d2tA 62 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8624 # 1pu6A.31.59 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEKKK 1pu6A 63 :NDDEIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=8626 # 1g73A.31.67 read from T0287.t2k.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)N33 (1g73A)N70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 31 :LL 1g73A 68 :KM T0287 35 :DEKKK 1g73A 72 :EEEDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8628 # 1oi7A.31.269 read from T0287.t2k.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E36 (1oi7A)T275 because E (beta_S) conformation "forbidden" or filtered. T0287 31 :LLNTD 1oi7A 270 :IPVAD T0287 37 :KKK 1oi7A 276 :IDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8630 # 1u7kA.31.61 read from T0287.t2k.many.frag # found chain 1u7kA in template set T0287 31 :LLNTDEKKK 1u7kA 62 :LLTGEEKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8631 # 1f74A.31.52 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 31 :LLNTDEKKK 1f74A 53 :MLSTEEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8632 # 1uw4B.31.32 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 31 :LLNTDEKKK 1uw4B 800 :WQDQEVKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8633 # 1vpmA.31.141 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 31 :LLNTDEKKK 1vpmA 130 :EPQTEEEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8634 # 1jalA.31.151 read from T0287.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LL 1jalA 152 :KG T0287 34 :TDEKKK 1jalA 155 :DKEAKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8636 # 1kicA.31.106 read from T0287.t2k.many.frag # found chain 1kicA in training set T0287 31 :LLNTDEKKK 1kicA 95 :ILNIPENVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8637 # 1no4A.31.17 read from T0287.t2k.many.frag # found chain 1no4A in template set T0287 31 :LLNTDEKKK 1no4A 19 :ELAQSERTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8638 # 2ahmA.31.43 read from T0287.t2k.many.frag # found chain 2ahmA in template set Warning: unaligning (T0287)E36 (2ahmA)D49 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LLNTD 2ahmA 44 :ILLAK T0287 37 :KKK 2ahmA 50 :TTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8640 # 1x2iA.31.20 read from T0287.t2k.many.frag # found chain 1x2iA in template set T0287 31 :LLNTDEKKK 1x2iA 18 :HVSATLARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8641 # 2cwyA.32.29 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 32 :LNTDEKKKI 2cwyA 30 :KATGEERRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8642 # 1qqfA.32.27 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 32 :L 1qqfA 1037 :F T0287 35 :DEKKKI 1qqfA 1040 :EKRQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8644 # 1b4fA.32.54 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 32 :LNTDEKKKI 1b4fA 55 :TLAGHQKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8645 # 1cr1A.32.92 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 32 :LNTDEKKKI 1cr1A 363 :RQSDSLKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8646 # 1k3yA.32.110 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 32 :LNT 1k3yA 112 :CPP T0287 37 :KKKI 1k3yA 117 :KDAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8648 # 2d3dA.32.58 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 32 :LNTDEKKKI 2d3dA 494 :LALGARRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8649 # 1w33A.32.118 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 32 :LNTDEKKKI 1w33A 188 :LSQEESKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8650 # 1uptB.32.35 read from T0287.t2k.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)N33 (1uptB)P2205 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1uptB 2204 :F T0287 34 :TDEKKKI 1uptB 2206 :DDQTQKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8652 # 1u84A.32.41 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 32 :LNTDEKKKI 1u84A 39 :YETEDARTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8653 # 1hynP.32.144 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 32 :LNTDEKKKI 1hynP 145 :IRPQDREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8654 # 1vpmA.32.142 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 32 :LNTDEKKKI 1vpmA 131 :PQTEEEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8655 # 1s2xA.32.46 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 32 :LNTD 1s2xA 40 :KDSN T0287 39 :KI 1s2xA 47 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8657 # 1vflA.32.333 read from T0287.t2k.many.frag # found chain 1vflA in template set T0287 32 :LNTDEKKKI 1vflA 332 :LPEDEKKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8658 # 1jalA.32.152 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 32 :LNTDEKKKI 1jalA 153 :GGDKEAKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8659 # 1d2tA.32.55 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 32 :LNTD 1d2tA 56 :RNTE T0287 38 :KKI 1d2tA 62 :KLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8661 # 1g73A.32.68 read from T0287.t2k.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)N33 (1g73A)N70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :L 1g73A 69 :M T0287 35 :DEKKKI 1g73A 72 :EEEDEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8663 # 2ex0A.32.247 read from T0287.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)N33 (2ex0A)N273 because L (left) conformation "forbidden" or filtered. T0287 32 :L 2ex0A 272 :G T0287 34 :TDEKKKI 2ex0A 274 :TDVREYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8665 # 1oi7A.32.270 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 32 :LNTDEKKKI 1oi7A 271 :PVADTIDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8666 # 1u3eM.32.105 read from T0287.t2k.many.frag # found chain 1u3eM in template set T0287 32 :LNTDEKKKI 1u3eM 106 :LNVSKAQQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8667 # 1uw4B.32.33 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1uw4B 801 :Q T0287 34 :TDEKKKI 1uw4B 803 :QEVKDYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8669 # 1ix9A.32.62 read from T0287.t2k.many.frag # found chain 1ix9A in training set T0287 32 :LNTDEKKKI 1ix9A 63 :LPADKKTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8670 # 1bo1A.32.251 read from T0287.t2k.many.frag # found chain 1bo1A in template set Warning: unaligning (T0287)N33 (1bo1A)G253 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :L 1bo1A 252 :V T0287 34 :TDEKKKI 1bo1A 254 :EESKKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8672 # 1e9rA.32.197 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 32 :LNTDEKKKI 1e9rA 268 :AGSNEASKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8673 # 1yrbA.32.183 read from T0287.t2k.many.frag # found chain 1yrbA in template set T0287 32 :LNTDEKKKI 1yrbA 170 :LSEEEKERH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8674 # 1u7kA.32.62 read from T0287.t2k.many.frag # found chain 1u7kA in template set T0287 32 :LNTDEKKKI 1u7kA 63 :LTGEEKQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8675 # 1xsvA.32.24 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 32 :LNTDEKKKI 1xsvA 22 :LLTNKQRNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8676 # 1szqA.32.450 read from T0287.t2k.many.frag # found chain 1szqA in template set T0287 32 :LNTDEKKKI 1szqA 451 :FPTRQQQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8677 # 1orjA.32.43 read from T0287.t2k.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)E1045 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKI 1orjA 1046 :LEKRKEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=8678 # 1u20A.32.194 read from T0287.t2k.many.frag # found chain 1u20A in template set T0287 32 :LNTDEKKKI 1u20A 195 :LREDQIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8679 # 2b0tA.32.111 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 32 :LNTDEKKKI 2b0tA 112 :ATTDEEKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8680 # 2cwyA.33.30 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKII 2cwyA 34 :EERRLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=8682 # 1b4fA.33.55 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 33 :NTDEKKKII 1b4fA 56 :LAGHQKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8683 # 1qqfA.33.28 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKII 1qqfA 1040 :EKRQEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8684 # 1bo1A.33.252 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 33 :NTDEKKKII 1bo1A 253 :GEESKKNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8685 # 1u84A.33.42 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 33 :NTDEKKKII 1u84A 40 :ETEDARTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8686 # 1vpmA.33.143 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 33 :NTDEKKKII 1vpmA 132 :QTEEEKRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8687 # 1s2xA.33.47 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 33 :NTDE 1s2xA 41 :DSND T0287 39 :KII 1s2xA 47 :DFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8689 # 1w33A.33.119 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 33 :NTDEKKKII 1w33A 189 :SQEESKSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8690 # 2d3dA.33.59 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 33 :NTDEKKKII 2d3dA 495 :ALGARRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8691 # 1cr1A.33.93 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 33 :NTDEKKKII 1cr1A 364 :QSDSLKREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8692 # 1k3yA.33.111 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 33 :NT 1k3yA 113 :PP T0287 37 :KKKII 1k3yA 117 :KDAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8694 # 1uptB.33.36 read from T0287.t2k.many.frag # found chain 1uptB in training set T0287 33 :NTDEKKKII 1uptB 2205 :PDDQTQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8695 # 1orjA.33.44 read from T0287.t2k.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKII 1orjA 1046 :LEKRKEFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=8696 # 1x2iA.33.22 read from T0287.t2k.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)N33 (1x2iA)S20 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1x2iA 21 :ATLARRLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8697 # 1g73A.33.69 read from T0287.t2k.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)N33 (1g73A)N70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 35 :DEKKKII 1g73A 72 :EEEDEVW Number of specific fragments extracted= 1 number of extra gaps= 1 total=8698 # 1hynP.33.145 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 33 :NTDEKKKII 1hynP 146 :RPQDREELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8699 # 1jfmA.33.131 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 33 :NTDEKKKII 1jfmA 132 :ANDESGVIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8700 # 1jalA.33.153 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 33 :NTDEKKKII 1jalA 154 :GDKEAKFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8701 # 1uw4B.33.34 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 33 :NTDEKKKII 1uw4B 802 :DQEVKDYVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8702 # 1szqA.33.451 read from T0287.t2k.many.frag # found chain 1szqA in template set T0287 33 :NTDEKKKII 1szqA 452 :PTRQQQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8703 # 1zroA.33.416 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 33 :NTDEKKKII 1zroA 417 :NDLSNRKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8704 # 1y0nA.33.10 read from T0287.t2k.many.frag # found chain 1y0nA in template set T0287 33 :NTDEKKKII 1y0nA 9 :EADTLNNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8705 # 2ex0A.33.248 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 33 :NTDEKKKII 2ex0A 273 :NTDVREYYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8706 # 1u7kA.33.63 read from T0287.t2k.many.frag # found chain 1u7kA in template set T0287 33 :NTDEKKKII 1u7kA 64 :TGEEKQRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8707 # 1ct5A.33.6 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 33 :NTDEKKKII 1ct5A 8 :DEDRKTQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8708 # 1oi7A.33.271 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 33 :NTDEKKKII 1oi7A 272 :VADTIDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8709 # 1ykhA.33.42 read from T0287.t2k.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1ykhA)P141 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKII 1ykhA 142 :DMYERKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=8710 # 1vflA.33.334 read from T0287.t2k.many.frag # found chain 1vflA in template set T0287 33 :NTDEKKKII 1vflA 333 :PEDEKKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8711 # 1usyA.33.142 read from T0287.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)N33 (1usyA)P143 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1usyA 144 :KDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8712 # 1d2tA.33.56 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 33 :NTD 1d2tA 57 :NTE T0287 38 :KKII 1d2tA 62 :KLAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8714 # 2cwyA.34.31 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 34 :TDEKKKIID 2cwyA 32 :TGEERRLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8715 # 1s2xA.34.48 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 34 :TDE 1s2xA 42 :SND T0287 39 :KIID 1s2xA 47 :DFLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8717 # 1b4fA.34.56 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 34 :TDEKKKIID 1b4fA 57 :AGHQKKILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8718 # 1bo1A.34.253 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 34 :TDEKKKIID 1bo1A 254 :EESKKNFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8719 # 1qqfA.34.29 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKIID 1qqfA 1040 :EKRQEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8720 # 1vpmA.34.144 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 34 :TDEKKKIID 1vpmA 133 :TEEEKRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8721 # 1w33A.34.120 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 34 :TDEKKKIID 1w33A 190 :QEESKSLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8722 # 1u84A.34.43 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 34 :TDEKKKIID 1u84A 41 :TEDARTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8723 # 1jfmA.34.132 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 34 :TDEKKKIID 1jfmA 133 :NDESGVIMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8724 # 1orjA.34.45 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 34 :TDEKKKIID 1orjA 1046 :LEKRKEFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8725 # 2d3dA.34.60 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 34 :TDEKKKIID 2d3dA 496 :LGARRKLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8726 # 1qgoA.34.86 read from T0287.t2k.many.frag # found chain 1qgoA in template set T0287 34 :TDEKKKIID 1qgoA 87 :GDEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8727 # 1oi7A.34.272 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 34 :TDEKKKIID 1oi7A 273 :ADTIDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8728 # 1vliA.34.265 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 34 :TDEKKKIID 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8729 # 1cr1A.34.94 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 34 :TDEKKKIID 1cr1A 365 :SDSLKREII Number of specific fragments extracted= 1 number of extra gaps= 0 total=8730 # 1ct5A.34.7 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 34 :TDEKKKIID 1ct5A 9 :EDRKTQLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8731 # 1yvrA.34.237 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 34 :TDEKKKIID 1yvrA 238 :TKDELEIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8732 # 1g73A.34.70 read from T0287.t2k.many.frag # found chain 1g73A in template set T0287 34 :TDEKKKIID 1g73A 71 :SEEEDEVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8733 # 3fapB.34.22 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. T0287 34 :T 3fapB 130 :E T0287 36 :EKKKIID 3fapB 132 :NVKGMFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8735 # 1i60A.34.75 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 34 :TDEKKKIID 1i60A 76 :EKGHNEIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8736 # 1y0nA.34.11 read from T0287.t2k.many.frag # found chain 1y0nA in template set T0287 34 :TDEKKKIID 1y0nA 10 :ADTLNNLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8737 # 2jdxA.34.79 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 34 :TDEKKKIID 2jdxA 117 :KDHLKKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8738 # 1zroA.34.417 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 34 :TDEKKKIID 1zroA 418 :DLSNRKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8739 # 1x2iA.34.23 read from T0287.t2k.many.frag # found chain 1x2iA in template set T0287 34 :TDEKKKIID 1x2iA 21 :ATLARRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8740 # 1j5sA.34.216 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 34 :TDEKKKIID 1j5sA 205 :TSTLDGFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8741 # 1fzcA.34.27 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 34 :TDEKKKIID 1fzcA 138 :KNVRAQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8742 # 1ykhA.34.43 read from T0287.t2k.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKIID 1ykhA 142 :DMYERKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8743 # 2c5rA.34.35 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 34 :TDE 2c5rA 98 :LQS T0287 39 :KIID 2c5rA 103 :EVLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=8745 # 2f6kA.34.62 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 34 :TDEKKKIID 2f6kA 63 :FGDKAETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8746 # 1y8aA.34.189 read from T0287.t2k.many.frag # found chain 1y8aA in training set T0287 34 :TDEKKKIID 1y8aA 168 :RSEVRKIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8747 # 2cwyA.35.32 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 36 :EKKKIIDQ 2cwyA 34 :EERRLLQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=8748 # 1b4fA.35.57 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 35 :DEKKKIIDQ 1b4fA 58 :GHQKKILNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8749 # 1s2xA.35.49 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 35 :DE 1s2xA 43 :ND T0287 39 :KIIDQ 1s2xA 47 :DFLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8751 # 1bo1A.35.254 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 35 :DEKKKIIDQ 1bo1A 255 :ESKKNFLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8752 # 1w33A.35.121 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 35 :DEKKKIIDQ 1w33A 191 :EESKSLLMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8753 # 1jfmA.35.133 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 35 :DEKKKIIDQ 1jfmA 134 :DESGVIMNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8754 # 1qqfA.35.30 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 35 :DEKKKIIDQ 1qqfA 1040 :EKRQEALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8755 # 1qgoA.35.87 read from T0287.t2k.many.frag # found chain 1qgoA in template set T0287 35 :DEKKKIIDQ 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8756 # 2d3dA.35.61 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 35 :DEKKKIIDQ 2d3dA 497 :GARRKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8757 # 1vliA.35.266 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 35 :DEKKKIIDQ 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8758 # 1u84A.35.44 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 35 :DEKKKIIDQ 1u84A 42 :EDARTLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8759 # 1orjA.35.46 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 35 :DEKKKIIDQ 1orjA 1047 :EKRKEFVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8760 # 1oi7A.35.273 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 35 :DEKKKIIDQ 1oi7A 274 :DTIDEIVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8761 # 1i60A.35.76 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 35 :DEKKKIIDQ 1i60A 77 :KGHNEIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8762 # 1vpmA.35.145 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 35 :DEKKKIIDQ 1vpmA 134 :EEEKRLYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=8763 # 3fapB.35.23 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E36 (3fapB)N132 because N (gamma') conformation "forbidden" or filtered. T0287 37 :KKKIIDQ 3fapB 133 :VKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=8764 # 1yvrA.35.238 read from T0287.t2k.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)E36 (1yvrA)D240 because P (beta_P) conformation "forbidden" or filtered. T0287 35 :D 1yvrA 239 :K T0287 37 :KKKIIDQ 1yvrA 241 :ELEIIHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8766 # 2c5rA.35.36 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 35 :DE 2c5rA 99 :QS T0287 39 :KIIDQ 2c5rA 103 :EVLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8768 # 2jdxA.35.80 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 35 :DEKKKIIDQ 2jdxA 118 :DHLKKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8769 # 1fviA.35.102 read from T0287.t2k.many.frag # found chain 1fviA in template set T0287 35 :DEKKKIIDQ 1fviA 104 :DPLKKYIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8770 # 1ct5A.35.8 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 35 :DEKKKIIDQ 1ct5A 10 :DRKTQLIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8771 # 1zroA.35.418 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 35 :DEKKKIIDQ 1zroA 419 :LSNRKLVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8772 # 1j5sA.35.217 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 35 :DEKKKIIDQ 1j5sA 206 :STLDGFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8773 # 1fzcA.35.28 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 35 :DEKKKIIDQ 1fzcA 139 :NVRAQLVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8774 # 1p4xA.35.98 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 35 :DEKKKIIDQ 1p4xA 99 :EQREKIAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=8775 # 1qf5A.35.180 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 35 :DEKKKIIDQ 1qf5A 181 :VDYQKVLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8776 # 1x2iA.35.24 read from T0287.t2k.many.frag # found chain 1x2iA in template set T0287 35 :DEKKKIIDQ 1x2iA 22 :TLARRLLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8777 # 1w2yA.35.123 read from T0287.t2k.many.frag # found chain 1w2yA in training set T0287 35 :DEKKKIIDQ 1w2yA 124 :GDIYGILND Number of specific fragments extracted= 1 number of extra gaps= 0 total=8778 # 256bA.35.20 read from T0287.t2k.many.frag # found chain 256bA in training set Warning: unaligning (T0287)E36 (256bA)N22 because Y (epsilon') conformation "forbidden" or filtered. T0287 35 :D 256bA 21 :D T0287 37 :KKKIIDQ 256bA 23 :AAQVKDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8780 # 1g73A.35.71 read from T0287.t2k.many.frag # found chain 1g73A in template set T0287 35 :DEKKKIIDQ 1g73A 72 :EEEDEVWQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8781 # 1b4fA.36.58 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 36 :EKKKIIDQI 1b4fA 59 :HQKKILNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8782 # 2cwyA.36.33 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 36 :EKKKIIDQI 2cwyA 34 :EERRLLQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8783 # 1s2xA.36.50 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 36 :E 1s2xA 44 :D T0287 39 :KIIDQI 1s2xA 47 :DFLRRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8785 # 1w33A.36.122 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 36 :EKKKIIDQI 1w33A 192 :ESKSLLMQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8786 # 1vliA.36.267 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 36 :EKKKIIDQI 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8787 # 1bo1A.36.255 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 36 :EKKKIIDQI 1bo1A 256 :SKKNFLEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8788 # 1qqfA.36.31 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 36 :EKKKIIDQI 1qqfA 1041 :KRQEALELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8789 # 1qgoA.36.88 read from T0287.t2k.many.frag # found chain 1qgoA in template set T0287 36 :EKKKIIDQI 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8790 # 3fapB.36.24 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=8791 # 1jfmA.36.134 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 36 :EKKKIIDQI 1jfmA 135 :ESGVIMNKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=8792 # 1oi7A.36.274 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 36 :EKKKIIDQI 1oi7A 275 :TIDEIVELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8793 # 1i60A.36.77 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 36 :EKKKIIDQI 1i60A 78 :GHNEIITEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8794 # 1qf5A.36.181 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 36 :EKKKIIDQI 1qf5A 182 :DYQKVLDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8795 # 1yvrA.36.239 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 36 :EKKKIIDQI 1yvrA 240 :DELEIIHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8796 # 1fviA.36.103 read from T0287.t2k.many.frag # found chain 1fviA in template set T0287 36 :EKKKIIDQI 1fviA 105 :PLKKYIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8797 # 1j5sA.36.218 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 36 :EKKKIIDQI 1j5sA 207 :TLDGFLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8798 # 2d3dA.36.62 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 36 :EKKKIIDQI 2d3dA 498 :ARRKLLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8799 # 1vpmA.36.146 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 36 :EKKKIIDQI 1vpmA 135 :EEKRLYETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8800 # 1zroA.36.419 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 36 :EKKKIIDQI 1zroA 420 :SNRKLVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8801 # 1w2yA.36.124 read from T0287.t2k.many.frag # found chain 1w2yA in training set T0287 36 :EKKKIIDQI 1w2yA 125 :DIYGILNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8802 # 2jdxA.36.81 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 36 :EKKKIIDQI 2jdxA 119 :HLKKAVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8803 # 2c5rA.36.37 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 36 :E 2c5rA 100 :S T0287 39 :KIIDQI 2c5rA 103 :EVLNYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8805 # 1u84A.36.45 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 36 :EKKKIIDQI 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8806 # 1y8aA.36.191 read from T0287.t2k.many.frag # found chain 1y8aA in training set T0287 36 :EKKKIIDQI 1y8aA 170 :EVRKIVESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8807 # 1fzcA.36.29 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 36 :EKKKIIDQI 1fzcA 140 :VRAQLVDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8808 # 1orjA.36.47 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 36 :EKKKIIDQI 1orjA 1048 :KRKEFVENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8809 # 1nekA.36.478 read from T0287.t2k.many.frag # found chain 1nekA in template set T0287 36 :EKKKIIDQI 1nekA 479 :AMAKGLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8810 # 1ct5A.36.9 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 36 :EKKKIIDQI 1ct5A 11 :RKTQLIAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8811 # 1bkrA.36.90 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 36 :EKKKIIDQI 1bkrA 91 :DEKSIITYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8812 # 1go3F.36.50 read from T0287.t2k.many.frag # found chain 1go3F in training set T0287 36 :EKKKIIDQI 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8813 # 1b4fA.37.59 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 37 :KKKIIDQIK 1b4fA 60 :QKKILNSIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8814 # 1w33A.37.123 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 37 :KKKIIDQIK 1w33A 193 :SKSLLMQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8815 # 1s2xA.37.51 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIK 1s2xA 47 :DFLRRVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8816 # 2cwyA.37.34 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 37 :KKKIIDQIK 2cwyA 35 :ERRLLQGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8817 # 1vliA.37.268 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 37 :KKKIIDQIK 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8818 # 3fapB.37.25 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 T0287 37 :KKKIIDQ 3fapB 133 :VKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=8819 # 1i60A.37.78 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 37 :KKKIIDQIK 1i60A 79 :HNEIITEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8820 # 1bo1A.37.256 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 37 :KKKIIDQIK 1bo1A 257 :KKNFLEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8821 # 1qf5A.37.182 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 37 :KKKIIDQIK 1qf5A 183 :YQKVLDDTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8822 # 1jfmA.37.135 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 37 :KKKIIDQIK 1jfmA 136 :SGVIMNKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8823 # 2c5rA.37.38 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIK 2c5rA 103 :EVLNYIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8824 # 1qgoA.37.89 read from T0287.t2k.many.frag # found chain 1qgoA in template set T0287 37 :KKKIIDQIK 1qgoA 90 :YEKIVREVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8825 # 1j5sA.37.219 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 37 :KKKIIDQIK 1j5sA 208 :LDGFLNALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=8826 # 1qqfA.37.32 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 37 :KKKIIDQIK 1qqfA 1042 :RQEALELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8827 # 1fzcA.37.30 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 37 :KKKIIDQIK 1fzcA 141 :RAQLVDMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8828 # 1fviA.37.104 read from T0287.t2k.many.frag # found chain 1fviA in template set Warning: unaligning (T0287)K39 (1fviA)K108 because P (beta_P) conformation "forbidden" or filtered. T0287 37 :KK 1fviA 106 :LK T0287 40 :IIDQIK 1fviA 109 :YIDRVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8830 # 256bA.37.22 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 37 :KKKIIDQIK 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8831 # 1hx1B.37.19 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 37 :KKKIIDQIK 1hx1B 169 :VEKIADQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8832 # 2d3dA.37.63 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 37 :KKKIIDQIK 2d3dA 499 :RRKLLKAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8833 # 1w2yA.37.125 read from T0287.t2k.many.frag # found chain 1w2yA in training set T0287 37 :KKKIIDQIK 1w2yA 126 :IYGILNDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8834 # 1nekA.37.479 read from T0287.t2k.many.frag # found chain 1nekA in template set T0287 37 :KKKIIDQIK 1nekA 480 :MAKGLEQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8835 # 2jdxA.37.82 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 37 :KKKIIDQIK 2jdxA 120 :LKKAVAEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8836 # 1qoyA.37.180 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 37 :KKKIIDQIK 1qoyA 166 :FQSQVDKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8837 # 1orjA.37.48 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 37 :KKKIIDQIK 1orjA 1049 :RKEFVENID Number of specific fragments extracted= 1 number of extra gaps= 0 total=8838 # 1nt2B.37.73 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 37 :KKKIIDQIK 1nt2B 85 :DRYVVALVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8839 # 1p4xA.37.100 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 37 :KKKIIDQIK 1p4xA 101 :REKIAERVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8840 # 1bkrA.37.91 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 37 :KKKIIDQIK 1bkrA 92 :EKSIITYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8841 # 1zroA.37.420 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 37 :KKKIIDQIK 1zroA 421 :NRKLVGKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8842 # 1oi7A.37.275 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 37 :KKKIIDQIK 1oi7A 276 :IDEIVELVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8843 # 1yvrA.37.240 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 37 :KKKIIDQIK 1yvrA 241 :ELEIIHLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=8844 # 1b4fA.38.60 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 38 :KKIIDQIKT 1b4fA 61 :KKILNSIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8845 # 1w33A.38.124 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 38 :KKIIDQIKT 1w33A 194 :KSLLMQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8846 # 1i60A.38.79 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 38 :KKIIDQIKT 1i60A 80 :NEIITEFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8847 # 1s2xA.38.52 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIKT 1s2xA 47 :DFLRRVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8848 # 1qf5A.38.183 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 38 :KKIIDQIKT 1qf5A 184 :QKVLDDTMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8849 # 3fapB.38.26 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 T0287 38 :KKIIDQ 3fapB 134 :KGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=8850 # 2cwyA.38.35 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 38 :KKIIDQIKT 2cwyA 36 :RRLLQGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8851 # 1vliA.38.269 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 38 :KKIIDQIKT 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8852 # 1hx1B.38.20 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 38 :KKIIDQIKT 1hx1B 170 :EKIADQLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8853 # 2c5rA.38.39 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIKT 2c5rA 103 :EVLNYIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=8854 # 1jfmA.38.136 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 38 :KKIIDQIKT 1jfmA 137 :GVIMNKWKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8855 # 1bo1A.38.257 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 38 :KKIIDQIKT 1bo1A 258 :KNFLEKLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8856 # 256bA.38.23 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 38 :KKIIDQIKT 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8857 # 1nt2B.38.74 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 38 :KKIIDQIKT 1nt2B 86 :RYVVALVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8858 # 1nekA.38.480 read from T0287.t2k.many.frag # found chain 1nekA in template set T0287 38 :KKIIDQIKT 1nekA 481 :AKGLEQLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8859 # 1qqfA.38.33 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 38 :KKIIDQIKT 1qqfA 1043 :QEALELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8860 # 1fzcA.38.31 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 38 :KKIIDQIKT 1fzcA 142 :AQLVDMKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8861 # 1j5sA.38.220 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 38 :KKIIDQIKT 1j5sA 209 :DGFLNALWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8862 # 1r7jA.38.63 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 38 :KKIIDQIKT 1r7jA 64 :EELLEDIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8863 # 1ofcX.38.165 read from T0287.t2k.many.frag # found chain 1ofcX in template set T0287 38 :KKIIDQIKT 1ofcX 853 :ERIMGQIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=8864 # 1qoyA.38.181 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 38 :KKIIDQIKT 1qoyA 167 :QSQVDKIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8865 # 1ct5A.38.11 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 38 :KKIIDQIKT 1ct5A 13 :TQLIAQYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=8866 # 1bkrA.38.92 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 38 :KKIIDQIKT 1bkrA 93 :KSIITYVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8867 # 1e6iA.38.71 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 38 :KKIIDQIKT 1e6iA 390 :EDFIYDARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8868 # 1jqnA.38.28 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 38 :KKIIDQIKT 1jqnA 29 :EHILERVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=8869 # 1td6A.38.53 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 38 :KKIIDQIKT 1td6A 42 :TFFLHQFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8870 # 1fi4A.38.298 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 38 :KKIIDQIKT 1fi4A 279 :KRIISWCHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8871 # 1fviA.38.105 read from T0287.t2k.many.frag # found chain 1fviA in template set T0287 38 :KKIIDQIKT 1fviA 107 :KKYIDRVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=8872 # 1p4xA.38.101 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 38 :KKIIDQIKT 1p4xA 102 :EKIAERVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8873 # 1vls.38.56 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 38 :KKIIDQIKT 1vls 91 :QNAKTTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8874 # 1b4fA.39.61 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 39 :KIIDQIKTM 1b4fA 62 :KILNSIQVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8875 # 1i60A.39.80 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 39 :KIIDQIKTM 1i60A 81 :EIITEFKGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8876 # 3fapB.39.27 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 39 :KIIDQ 3fapB 135 :GMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=8877 # 1s2xA.39.53 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 39 :KIIDQIKTM 1s2xA 47 :DFLRRVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8878 # 2c5rA.39.40 read from T0287.t2k.many.frag # found chain 2c5rA in template set T0287 39 :KIIDQIKTM 2c5rA 103 :EVLNYIETQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8879 # 1w33A.39.125 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 39 :KIIDQIKTM 1w33A 195 :SLLMQIKSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8880 # 256bA.39.24 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 39 :KIIDQIKTM 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8881 # 1hx1B.39.21 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 39 :KIIDQIKTM 1hx1B 171 :KIADQLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8882 # 1vliA.39.270 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 39 :KIIDQIKTM 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8883 # 1qf5A.39.184 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 39 :KIIDQIKTM 1qf5A 185 :KVLDDTMAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8884 # 1nt2B.39.75 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 39 :KIIDQIKTM 1nt2B 87 :YVVALVKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8885 # 1bo1A.39.258 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 39 :KIIDQIKTM 1bo1A 259 :NFLEKLKRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8886 # 1jqnA.39.29 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 39 :KIIDQIKTM 1jqnA 30 :HILERVETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8887 # 1td6A.39.54 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 39 :KIIDQIKTM 1td6A 43 :FFLHQFDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8888 # 1ofcX.39.166 read from T0287.t2k.many.frag # found chain 1ofcX in template set T0287 39 :KIIDQIKTM 1ofcX 854 :RIMGQIERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8889 # 1e6iA.39.72 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 39 :KIIDQIKTM 1e6iA 391 :DFIYDARLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8890 # 1j5sA.39.221 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 39 :KIIDQIKTM 1j5sA 210 :GFLNALWKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8891 # 2jdxA.39.84 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 39 :KIIDQIKTM 2jdxA 122 :KAVAEIEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8892 # 1ct5A.39.12 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 39 :KIIDQIKTM 1ct5A 14 :QLIAQYESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8893 # 1jfmA.39.137 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 39 :KIIDQIKTM 1jfmA 138 :VIMNKWKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8894 # 2cwyA.39.36 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 39 :KIIDQIKTM 2cwyA 37 :RLLQGVILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8895 # 1qqfA.39.34 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 39 :KIIDQIKTM 1qqfA 1044 :EALELIKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8896 # 1gw5S.39.78 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 39 :KIIDQIKTM 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8897 # 1bkrA.39.93 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 39 :KIIDQIKTM 1bkrA 94 :SIITYVVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8898 # 1orjA.39.50 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 39 :KIIDQIKTM 1orjA 1051 :EFVENIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8899 # 1fviA.39.106 read from T0287.t2k.many.frag # found chain 1fviA in template set Warning: unaligning (T0287)K39 (1fviA)K108 because P (beta_P) conformation "forbidden" or filtered. T0287 40 :IIDQIKTM 1fviA 109 :YIDRVEDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=8900 # 1r7jA.39.64 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 39 :KIIDQIKTM 1r7jA 65 :ELLEDIRKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8901 # 1p4xA.39.102 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 39 :KIIDQIKTM 1p4xA 103 :KIAERVTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8902 # 1vls.39.57 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 39 :KIIDQIKTM 1vls 92 :NAKTTLAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8903 # 1h05A.39.56 read from T0287.t2k.many.frag # found chain 1h05A in training set T0287 39 :KIIDQIKTM 1h05A 57 :QLLDWIHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8904 # 1i60A.40.81 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 40 :IIDQIKTMH 1i60A 82 :IITEFKGMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8905 # 1b4fA.40.62 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 40 :IIDQIKTMH 1b4fA 63 :ILNSIQVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8906 # 3fapB.40.28 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 40 :IIDQ 3fapB 136 :MFEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=8908 # 2c5rA.40.41 read from T0287.t2k.many.frag # found chain 2c5rA in template set T0287 40 :IIDQIKTMH 2c5rA 104 :VLNYIETQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8909 # 256bA.40.25 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 40 :IIDQIKTMH 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8910 # 1nt2B.40.76 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 40 :IIDQIKTMH 1nt2B 88 :VVALVKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8911 # 1w33A.40.126 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 40 :IIDQIKTMH 1w33A 196 :LLMQIKSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8912 # 1s2xA.40.54 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 40 :IIDQIKTMH 1s2xA 48 :FLRRVQELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8913 # 1jqnA.40.30 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 40 :IIDQIKTMH 1jqnA 31 :ILERVETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8914 # 1hx1B.40.22 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 40 :IIDQIKTMH 1hx1B 172 :IADQLEELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8915 # 1e6iA.40.73 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 40 :IIDQIKTMH 1e6iA 392 :FIYDARLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8916 # 1td6A.40.55 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 40 :IIDQIKTMH 1td6A 44 :FLHQFDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8917 # 1gw5S.40.79 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 40 :IIDQIKTMH 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8918 # 1ofcX.40.167 read from T0287.t2k.many.frag # found chain 1ofcX in template set T0287 40 :IIDQIKTMH 1ofcX 855 :IMGQIERGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8919 # 1orjA.40.51 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 40 :IIDQIKTMH 1orjA 1052 :FVENIDRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8920 # 1vls.40.58 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 40 :IIDQIKTMH 1vls 93 :AKTTLAQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8921 # 1qf5A.40.185 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 40 :IIDQIKTMH 1qf5A 186 :VLDDTMAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8922 # 1vliA.40.271 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 40 :IIDQIKTMH 1vliA 260 :MVDGIRKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8923 # 1j5sA.40.222 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 40 :IIDQIKTMH 1j5sA 211 :FLNALWKSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8924 # 1bo1A.40.259 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 40 :IIDQIKTMH 1bo1A 260 :FLEKLKRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8925 # 1xlyA.40.49 read from T0287.t2k.many.frag # found chain 1xlyA in template set T0287 40 :IIDQIKTMH 1xlyA 55 :LIKFVKKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8926 # 1bkrA.40.94 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 40 :IIDQIKTMH 1bkrA 95 :IITYVVTYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8927 # 1gqiA.40.614 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 40 :IIDQIKTMH 1gqiA 619 :GVEQVRAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8928 # 1nekA.40.482 read from T0287.t2k.many.frag # found chain 1nekA in template set T0287 40 :IIDQIKTMH 1nekA 483 :GLEQLKVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8929 # 1p4xA.40.103 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 40 :IIDQIKTMH 1p4xA 104 :IAERVTLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8930 # 1ct5A.40.13 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 40 :IIDQIKTMH 1ct5A 15 :LIAQYESVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8931 # 2jdxA.40.85 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 40 :IIDQIKTMH 2jdxA 123 :AVAEIEEMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8932 # 1v74B.40.43 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 40 :IIDQIKTMH 1v74B 44 :ILNCGEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8933 # 1hulA.40.63 read from T0287.t2k.many.frag # found chain 1hulA in template set Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1hulA)L72 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1hulA)L72 T0287 40 :IID 1hulA 68 :LFK T0287 45 :KTMH 1hulA 73 :SLIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8935 # 2cwyA.40.37 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 40 :IIDQIKTMH 2cwyA 38 :LLQGVILLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8936 # 1i60A.41.82 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 41 :IDQIKTMHD 1i60A 83 :ITEFKGMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=8937 # 1b4fA.41.63 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 41 :IDQIKTMHD 1b4fA 64 :LNSIQVMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8938 # 2c5rA.41.42 read from T0287.t2k.many.frag # found chain 2c5rA in template set T0287 41 :IDQIKTMHD 2c5rA 105 :LNYIETQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8939 # 3fapB.41.29 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 T0287 41 :IDQ 3fapB 137 :FEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=8941 # 1jqnA.41.31 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 41 :IDQIKTMHD 1jqnA 32 :LERVETIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8942 # 256bA.41.26 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 41 :IDQIKTMHD 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8943 # 1nt2B.41.77 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 41 :IDQIKTMHD 1nt2B 89 :VALVKALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8944 # 1s2xA.41.55 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 41 :IDQIKTMHD 1s2xA 49 :LRRVQELRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8945 # 1hx1B.41.23 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 41 :IDQIKTMHD 1hx1B 173 :ADQLEELNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8946 # 1bf5A.41.7 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 41 :IDQIKTMHD 1bf5A 143 :DSKVRNVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8947 # 1w33A.41.127 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 41 :IDQIKTMHD 1w33A 197 :LMQIKSNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8948 # 1gqiA.41.615 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 41 :IDQIKTMHD 1gqiA 620 :VEQVRAMQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8949 # 1e6iA.41.74 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 41 :IDQIKTMHD 1e6iA 393 :IYDARLVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8950 # 1td6A.41.56 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 41 :IDQIKTMHD 1td6A 45 :LHQFDKVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=8951 # 1ct5A.41.14 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 41 :IDQIKTMHD 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8952 # 1xlyA.41.50 read from T0287.t2k.many.frag # found chain 1xlyA in template set T0287 41 :IDQIKTMHD 1xlyA 56 :IKFVKKLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8953 # 1gw5S.41.80 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 41 :IDQIKTMHD 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8954 # 2jdxA.41.86 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 41 :IDQIKTMHD 2jdxA 124 :VAEIEEMCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8955 # 1orjA.41.52 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 41 :IDQIKTMHD 1orjA 1053 :VENIDRVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8956 # 1bo1A.41.260 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 41 :IDQIKTMHD 1bo1A 261 :LEKLKRDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8957 # 1vls.41.59 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 41 :IDQIKTMHD 1vls 94 :KTTLAQAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8958 # 1vdkA.41.204 read from T0287.t2k.many.frag # found chain 1vdkA in training set T0287 41 :IDQIKTMHD 1vdkA 205 :AAQLKTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8959 # 1yvhA.41.62 read from T0287.t2k.many.frag # found chain 1yvhA in template set T0287 41 :IDQIKTMHD 1yvhA 85 :LDLLPDTYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8960 # 1qf5A.41.186 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 41 :IDQIKTMHD 1qf5A 187 :LDDTMAVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8961 # 1bgf.41.80 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 41 :IDQIKTMHD 1bgf 80 :IHNLKRIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8962 # 1ofcX.41.168 read from T0287.t2k.many.frag # found chain 1ofcX in template set T0287 41 :IDQIKTMHD 1ofcX 856 :MGQIERGEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8963 # 1v74B.41.44 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 41 :IDQIKTMHD 1v74B 45 :LNCGEELFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8964 # 1vliA.41.272 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 41 :IDQIKTMHD 1vliA 261 :VDGIRKTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8965 # 1j5sA.41.223 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 41 :IDQIKTMHD 1j5sA 212 :LNALWKSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8966 # 2f6lA.41.40 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 41 :IDQIKTMHD 2f6lA 74 :EQQLAKLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8967 # 1i60A.42.83 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 42 :DQIKTMHDF 1i60A 84 :TEFKGMMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=8968 # 1b4fA.42.64 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 42 :DQIKTMHDF 1b4fA 65 :NSIQVMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8969 # 1nt2B.42.78 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 42 :DQIKTMHDF 1nt2B 90 :ALVKALEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8970 # 1jqnA.42.32 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 42 :DQIKTMHDF 1jqnA 33 :ERVETIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8971 # 3fapB.42.30 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 42 :DQ 3fapB 138 :EV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=8973 # 1bf5A.42.8 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 42 :DQIKTMHDF 1bf5A 144 :SKVRNVKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8974 # 2c5rA.42.43 read from T0287.t2k.many.frag # found chain 2c5rA in template set T0287 42 :DQIKTMHDF 2c5rA 106 :NYIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8975 # 256bA.42.27 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 42 :DQIKTMHDF 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8976 # 1gqiA.42.616 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 42 :DQIKTMHDF 1gqiA 621 :EQVRAMQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8977 # 1e6iA.42.75 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 42 :DQIKTMHDF 1e6iA 394 :YDARLVFNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8978 # 1s2xA.42.56 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 42 :DQIKTMHDF 1s2xA 50 :RRVQELRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8979 # 1hx1B.42.24 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 42 :DQIKTMHDF 1hx1B 174 :DQLEELNKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8980 # 1xlyA.42.51 read from T0287.t2k.many.frag # found chain 1xlyA in template set T0287 42 :DQIKTMHDF 1xlyA 57 :KFVKKLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8981 # 1orjA.42.53 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 42 :DQIKTMHDF 1orjA 1054 :ENIDRVYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8982 # 1td6A.42.57 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 42 :DQIKTMHDF 1td6A 46 :HQFDKVMEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8983 # 2f6lA.42.41 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 42 :DQIKTMHDF 2f6lA 75 :QQLAKLGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=8984 # 1zupA.42.285 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE at template residue (1zupA)L274 T0287 43 :QIKTMHDF 1zupA 275 :PIQFLEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=8985 # 1v74B.42.45 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 42 :DQIKTMHDF 1v74B 46 :NCGEELFMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8986 # 1ct5A.42.15 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 42 :DQIKTMHDF 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8987 # 1vdkA.42.205 read from T0287.t2k.many.frag # found chain 1vdkA in training set T0287 42 :DQIKTMHDF 1vdkA 206 :AQLKTTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8988 # 1gw5S.42.81 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 42 :DQIKTMHDF 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8989 # 1fjgT.42.53 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 42 :DQIKTMHDF 1fjgT 54 :KIMRKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8990 # 1nogA.42.29 read from T0287.t2k.many.frag # found chain 1nogA in training set T0287 42 :DQIKTMHDF 1nogA 30 :GTIDELNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8991 # 1u0fA.42.219 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 42 :DQIKTMHDF 1u0fA 219 :TNAETAKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=8992 # 1w33A.42.128 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 42 :DQIKTMHDF 1w33A 198 :MQIKSNLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8993 # 1kkoA.42.212 read from T0287.t2k.many.frag # found chain 1kkoA in training set T0287 42 :DQIKTMHDF 1kkoA 213 :EYVRWLSDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8994 # 1alu.42.118 read from T0287.t2k.many.frag # found chain 1alu in template set T0287 42 :DQIKTMHDF 1alu 117 :MSTKVLIQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8995 # 1moq.42.194 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 42 :DQIKTMHDF 1moq 435 :HGLQALPSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8996 # 1ail.42.37 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 42 :DQIKTMHDF 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8997 # 2acvA.42.430 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 42 :DQIKTMHDF 2acvA 431 :KKVQEMKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8998 # 1i60A.43.84 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 43 :QIKTMHDFF 1i60A 85 :EFKGMMETC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8999 # 1nt2B.43.79 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 43 :QIKTMHDFF 1nt2B 91 :LVKALEEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9000 # 1jqnA.43.33 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 43 :QIKTMHDFF 1jqnA 34 :RVETIRKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9001 # 2c5rA.43.44 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 T0287 43 :QIKTMHDF 2c5rA 107 :YIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=9002 # 3fapB.43.31 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 43 :Q 3fapB 139 :V T0287 48 :H 3fapB 144 :H T0287 51 :F 3fapB 147 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=9005 # 1e6iA.43.76 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 43 :QIKTMHDFF 1e6iA 395 :DARLVFNNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9006 # 1gqiA.43.617 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 43 :QIKTMHDFF 1gqiA 622 :QVRAMQRTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9007 # 1bf5A.43.9 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 43 :QIKTMHDFF 1bf5A 145 :KVRNVKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9008 # 1hx1B.43.25 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 43 :QIKTMHDFF 1hx1B 175 :QLEELNKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9009 # 1b4fA.43.65 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 43 :QIKTMHDFF 1b4fA 66 :SIQVMRAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9010 # 256bA.43.28 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 43 :QIKTMHDFF 256bA 29 :ALTKMRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9011 # 1vdkA.43.206 read from T0287.t2k.many.frag # found chain 1vdkA in training set T0287 43 :QIKTMHDFF 1vdkA 207 :QLKTTLAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9012 # 1moq.43.195 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 43 :QIKTMHDFF 1moq 436 :GLQALPSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9013 # 1s2xA.43.57 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 43 :QIKTMHDFF 1s2xA 51 :RVQELRINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9014 # 1zupA.43.286 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 43 :QIKTMHDFF 1zupA 275 :PIQFLEENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9015 # 1n1fA.43.117 read from T0287.t2k.many.frag # found chain 1n1fA in template set T0287 43 :QIKTMHDFF 1n1fA 118 :ATRVIHDNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9016 # 2acvA.43.431 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 43 :QIKTMHDFF 2acvA 432 :KVQEMKEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9017 # 1orjA.43.54 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 43 :QIKTMHDFF 1orjA 1055 :NIDRVYDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=9018 # 2ahmA.43.13 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 43 :QIKTMHDFF 2ahmA 14 :TSVVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9019 # 1u0fA.43.220 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 43 :QIKTMHDFF 1u0fA 220 :NAETAKEWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9020 # 1ail.43.38 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 43 :QIKTMHDFF 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9021 # 1fjgT.43.54 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 43 :QIKTMHDFF 1fjgT 55 :IMRKAESLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9022 # 1ct5A.43.16 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 43 :QIKTMHDFF 1ct5A 18 :QYESVREVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9023 # 2etsA.43.22 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 43 :QIKTMHDFF 2etsA 11 :EVNNMQQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9024 # 1xlyA.43.52 read from T0287.t2k.many.frag # found chain 1xlyA in template set T0287 43 :QIKTMHDFF 1xlyA 58 :FVKKLRFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9025 # 1nogA.43.30 read from T0287.t2k.many.frag # found chain 1nogA in training set T0287 43 :QIKTMHDFF 1nogA 31 :TIDELNSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9026 # 1vjxA.43.53 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 43 :QIKTMHDFF 1vjxA 42 :QERIHAEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9027 # 2btoA.43.418 read from T0287.t2k.many.frag # found chain 2btoA in template set T0287 43 :QIKTMHDFF 2btoA 419 :SAQELVQSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9028 # 1v74B.43.46 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 43 :QIKTMHDFF 1v74B 47 :CGEELFMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9029 # 2cbiA.43.497 read from T0287.t2k.many.frag # found chain 2cbiA in template set T0287 43 :QIKTMHDFF 2cbiA 528 :EFARMEEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9030 # 1i60A.44.85 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 44 :IKTMHDFFK 1i60A 86 :FKGMMETCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9031 # 1bf5A.44.10 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 44 :IKTMHDFFK 1bf5A 146 :VRNVKDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9032 # 1jqnA.44.34 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 44 :IKTMHDFFK 1jqnA 35 :VETIRKLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9033 # 1nt2B.44.80 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 44 :IKTMHDFFK 1nt2B 92 :VKALEEIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9034 # 1e6iA.44.77 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 44 :IKTMHDFFK 1e6iA 396 :ARLVFNNCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9035 # 1orjA.44.55 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 44 :IKTMHDFFK 1orjA 1056 :IDRVYDIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9036 # 1moq.44.196 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 44 :IKTMHDFFK 1moq 437 :LQALPSRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9037 # 1zupA.44.287 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 44 :IKTMHDFFK 1zupA 276 :IQFLEENLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9038 # 1n1fA.44.118 read from T0287.t2k.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)H48 (1n1fA)H123 because H (helix) conformation "forbidden" or filtered. T0287 44 :IKTM 1n1fA 119 :TRVI T0287 49 :DFFK 1n1fA 124 :DNYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9040 # 1gqiA.44.618 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 44 :IKTMHDFFK 1gqiA 623 :VRAMQRTWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9041 # 3fapB.44.32 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FK 3fapB 147 :ME Number of specific fragments extracted= 2 number of extra gaps= 2 total=9043 # 2acvA.44.432 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 44 :IKTMHDFFK 2acvA 433 :VQEMKEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9044 # 1u0fA.44.221 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 44 :IKTMHDFFK 1u0fA 221 :AETAKEWFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9045 # 1fjgT.44.55 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 44 :IKTMHDFFK 1fjgT 56 :MRKAESLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9046 # 1ow4A.44.96 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 44 :IKTMHDFFK 1ow4A 86 :AKAVNDCAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9047 # 1ail.44.39 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 44 :IKTMHDFFK 1ail 40 :QKSLRGRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9048 # 1hx1B.44.26 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 44 :IKTMHDFFK 1hx1B 176 :LEELNKELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9049 # 1nogA.44.31 read from T0287.t2k.many.frag # found chain 1nogA in training set T0287 44 :IKTMHDFFK 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9050 # 2etsA.44.23 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 44 :IKTMHDFFK 2etsA 12 :VNNMQQNFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9051 # 2cbiA.44.498 read from T0287.t2k.many.frag # found chain 2cbiA in template set T0287 44 :IKTMHDFFK 2cbiA 529 :FARMEEACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9052 # 2c5rA.44.45 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 44 :IKTMHDF 2c5rA 108 :IETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=9053 # 1b4fA.44.66 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 44 :IKTMHDFFK 1b4fA 67 :IQVMRAQMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9054 # 1kkoA.44.214 read from T0287.t2k.many.frag # found chain 1kkoA in training set T0287 44 :IKTMHDFFK 1kkoA 215 :VRWLSDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9055 # 256bA.44.29 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 44 :IKTMHDFFK 256bA 30 :LTKMRAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9056 # 1h6kA.44.546 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 44 :IKTMHDFFK 1h6kA 566 :LAKFHEVFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9057 # 2ahmA.44.14 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 44 :IKTMHDFFK 2ahmA 15 :SVVLLSVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9058 # 1ct5A.44.17 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 44 :IKTMHDFFK 1ct5A 19 :YESVREVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9059 # 1gw5S.44.83 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 44 :IKTMHDFFK 1gw5S 84 :IHNFVEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9060 # 2f6lA.44.43 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 44 :IKTMHDFFK 2f6lA 77 :LAKLGEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9061 # 1h5uA.44.734 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 44 :IKTMHDFFK 1h5uA 735 :IPELRQIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9062 # 1jqnA.45.35 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 45 :KTMHDFFKQ 1jqnA 36 :ETIRKLSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9063 # 1nt2B.45.81 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 45 :KTMHDFFKQ 1nt2B 93 :KALEEIDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=9064 # 1orjA.45.56 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 45 :KTMHDFFKQ 1orjA 1057 :DRVYDIISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9065 # 1moq.45.197 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 45 :KTMHDFFKQ 1moq 438 :QALPSRIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9066 # 1u0fA.45.222 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 45 :KTMHDFFKQ 1u0fA 222 :ETAKEWFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9067 # 1zupA.45.288 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 45 :KTMHDFFKQ 1zupA 277 :QFLEENLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9068 # 1i60A.45.86 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 45 :KTMHDFFKQ 1i60A 87 :KGMMETCKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9069 # 1e6iA.45.78 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 45 :KTMHDFFKQ 1e6iA 397 :RLVFNNCRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9070 # 1bf5A.45.11 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 45 :KTMHDFFKQ 1bf5A 147 :RNVKDKVMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9071 # 1ow4A.45.97 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 45 :KTMHDFFKQ 1ow4A 87 :KAVNDCANQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9072 # 2acvA.45.433 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 45 :KTMHDFFKQ 2acvA 434 :QEMKEMSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9073 # 1n1fA.45.119 read from T0287.t2k.many.frag # found chain 1n1fA in template set T0287 45 :KTMHDFFKQ 1n1fA 120 :RVIHDNYDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9074 # 1ail.45.40 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 45 :KTMHDFFKQ 1ail 41 :KSLRGRGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=9075 # 1h6kA.45.547 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 45 :KTMHDFFKQ 1h6kA 567 :AKFHEVFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9076 # 2etsA.45.24 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 45 :KTMHDFFKQ 2etsA 13 :NNMQQNFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9077 # 1fjgT.45.56 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 45 :KTMHDFFKQ 1fjgT 57 :RKAESLIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9078 # 3fapB.45.33 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)H48 (3fapB)H144 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 51 :FKQ 3fapB 147 :MER Number of specific fragments extracted= 1 number of extra gaps= 1 total=9079 # 1vjxA.45.55 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 45 :KTMHDFFKQ 1vjxA 44 :RIHAEIFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9080 # 1h5uA.45.735 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 45 :KTMHDFFKQ 1h5uA 736 :PELRQIIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9081 # 1p4xA.45.108 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 45 :KTMHDFFKQ 1p4xA 109 :TLFDQIIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9082 # 1jfmA.45.143 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 45 :KTMHDFFKQ 1jfmA 144 :KDDGEFVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9083 # 1nogA.45.32 read from T0287.t2k.many.frag # found chain 1nogA in training set T0287 45 :KTMHDFFKQ 1nogA 33 :DELNSFIGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9084 # 1gqiA.45.619 read from T0287.t2k.many.frag # found chain 1gqiA in training set Warning: unaligning (T0287)Q53 (1gqiA)Q632 because G (3-10) conformation "forbidden" or filtered. T0287 45 :KTMHDFFK 1gqiA 624 :RAMQRTWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=9085 # 2ahmA.45.15 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 45 :KTMHDFFKQ 2ahmA 16 :VVLLSVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9086 # 1j5sA.45.227 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 45 :KTMHDFFKQ 1j5sA 216 :WKSHEHFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9087 # 2f6lA.45.44 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 45 :KTMHDFFKQ 2f6lA 78 :AKLGEDARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9088 # 1jeyA.45.518 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 45 :KTMHDFFKQ 1jeyA 519 :GSLVDEFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9089 # 1gw5S.45.84 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 45 :KTMHDFFKQ 1gw5S 85 :HNFVEVLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9090 # 2c5rA.45.46 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 45 :KTMHDF 2c5rA 109 :ETQRTY T0287 53 :Q 2c5rA 117 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=9092 # 1vdkA.45.208 read from T0287.t2k.many.frag # found chain 1vdkA in training set T0287 45 :KTMHDFFKQ 1vdkA 209 :KTTLAAVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9093 # 1moq.46.198 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 46 :TMHDFFKQM 1moq 439 :ALPSRIEQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9094 # 1zupA.46.289 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 46 :TMHDFFKQM 1zupA 278 :FLEENLSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9095 # 1orjA.46.57 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 46 :TMHDFFKQM 1orjA 1058 :RVYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9096 # 1u0fA.46.223 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 46 :TMHDFFKQM 1u0fA 223 :TAKEWFLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9097 # 1jqnA.46.36 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 46 :TMHDFFKQM 1jqnA 37 :TIRKLSKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9098 # 1ow4A.46.98 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 46 :TMHDFFKQM 1ow4A 88 :AVNDCANQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9099 # 1e6iA.46.79 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 46 :TMHDFFKQM 1e6iA 398 :LVFNNCRMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9100 # 1h6kA.46.548 read from T0287.t2k.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)M47 (1h6kA)F569 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H48 (1h6kA)H570 because H (helix) conformation "forbidden" or filtered. T0287 46 :T 1h6kA 568 :K T0287 49 :DFFKQM 1h6kA 571 :EVFKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9102 # 1bf5A.46.12 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 46 :TMHDFFKQM 1bf5A 148 :NVKDKVMCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9103 # 2acvA.46.434 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 46 :TMHDFFKQM 2acvA 435 :EMKEMSRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9104 # 1i60A.46.87 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 46 :TMHDFFKQM 1i60A 88 :GMMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9105 # 1n1fA.46.120 read from T0287.t2k.many.frag # found chain 1n1fA in template set T0287 46 :TMHDFFKQM 1n1fA 121 :VIHDNYDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9106 # 1ail.46.41 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 46 :TMHDFFKQM 1ail 42 :SLRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9107 # 1nt2B.46.82 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 46 :TMHDFFKQM 1nt2B 94 :ALEEIDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9108 # 1vjxA.46.56 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 46 :TMHDFFKQM 1vjxA 45 :IHAEIFRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9109 # 2etsA.46.25 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 46 :TMHDFFKQM 2etsA 14 :NMQQNFENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9110 # 1w33A.46.71 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 46 :TMHDFFKQM 1w33A 141 :KLKEILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9111 # 1jeyA.46.519 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 46 :TMHDFFKQM 1jeyA 520 :SLVDEFKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9112 # 1fjgT.46.57 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 46 :TMHDFFKQM 1fjgT 58 :KAESLIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9113 # 1alu.46.122 read from T0287.t2k.many.frag # found chain 1alu in template set T0287 46 :TMHDFFKQM 1alu 121 :VLIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9114 # 1gw5S.46.85 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 46 :TMHDFFKQM 1gw5S 86 :NFVEVLNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9115 # 1p4xA.46.109 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 46 :TMHDFFKQM 1p4xA 110 :LFDQIIKQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9116 # 1h5uA.46.736 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 46 :TMHDFFKQM 1h5uA 737 :ELRQIIEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9117 # 2ahmA.46.16 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 46 :TMHDFFKQM 2ahmA 17 :VLLSVLQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9118 # 1gqiA.46.620 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 46 :TMHDFFKQM 1gqiA 625 :AMQRTWDQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9119 # 1qlwA.46.267 read from T0287.t2k.many.frag # found chain 1qlwA in training set T0287 46 :TMHDFFKQM 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9120 # 2f6lA.46.45 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 46 :TMHDFFKQM 2f6lA 79 :KLGEDARSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9121 # 1j5sA.46.228 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)M54 (1j5sA)H225 because G (3-10) conformation "forbidden" or filtered. T0287 46 :TMHDFFKQ 1j5sA 217 :KSHEHFKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9122 # 1qf5A.46.191 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 46 :TMHDFFKQM 1qf5A 192 :AVADILTSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9123 # 1r8iA.46.134 read from T0287.t2k.many.frag # found chain 1r8iA in template set T0287 46 :TMHDFFKQM 1r8iA 159 :DMQALTEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9124 # 1moq.47.199 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 47 :MHDFFKQMH 1moq 440 :LPSRIEQML Number of specific fragments extracted= 1 number of extra gaps= 0 total=9125 # 1u0fA.47.224 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 47 :MHDFFKQMH 1u0fA 224 :AKEWFLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9126 # 1ow4A.47.99 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 47 :MHDFFKQMH 1ow4A 89 :VNDCANQVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9127 # 1zupA.47.290 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 47 :MHDFFKQMH 1zupA 279 :LEENLSYYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9128 # 1e6iA.47.80 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 47 :MHDFFKQMH 1e6iA 399 :VFNNCRMYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9129 # 1jqnA.47.37 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 47 :MHDFFKQMH 1jqnA 38 :IRKLSKSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9130 # 1h6kA.47.549 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 47 :MHDFFKQMH 1h6kA 569 :FHEVFKTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9131 # 1w33A.47.72 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 47 :MHDFFKQMH 1w33A 142 :LKEILEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9132 # 2acvA.47.435 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 47 :MHDFFKQMH 2acvA 436 :MKEMSRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9133 # 1orjA.47.58 read from T0287.t2k.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 T0287 47 :MHDFFKQM 1orjA 1059 :VYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9134 # 1ail.47.42 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 47 :MHDFFKQMH 1ail 43 :LRGRGSTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9135 # 1nt2B.47.83 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 47 :MHDFFKQMH 1nt2B 95 :LEEIDESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9136 # 1vjxA.47.57 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 47 :MHDFFKQMH 1vjxA 46 :HAEIFRKMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9137 # 1jeyA.47.520 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 47 :MHDFFKQMH 1jeyA 521 :LVDEFKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9138 # 1n1fA.47.121 read from T0287.t2k.many.frag # found chain 1n1fA in template set T0287 47 :MHDFFKQMH 1n1fA 122 :IHDNYDQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9139 # 2f6lA.47.46 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 47 :MHDFFKQMH 2f6lA 80 :LGEDARSQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9140 # 1bf5A.47.13 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 47 :MHDFFKQMH 1bf5A 149 :VKDKVMCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9141 # 1ajsA.47.311 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 47 :MHDFFKQMH 1ajsA 312 :DPELFHEWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9142 # 2etsA.47.26 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 47 :MHDFFKQMH 2etsA 15 :MQQNFENVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9143 # 1i60A.47.88 read from T0287.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)H55 (1i60A)G97 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1i60A 89 :MMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9144 # 1h5uA.47.737 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 47 :MHDFFKQMH 1h5uA 738 :LRQIIEQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9145 # 1ei6A.47.220 read from T0287.t2k.many.frag # found chain 1ei6A in template set Warning: unaligning (T0287)H55 (1ei6A)H230 because H (helix) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1ei6A 222 :MDSYFKRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=9146 # 1p4xA.47.110 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 47 :MHDFFKQMH 1p4xA 111 :FDQIIKQFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9147 # 1t98A.47.163 read from T0287.t2k.many.frag # found chain 1t98A in template set T0287 47 :MHDFFKQMH 1t98A 164 :VAEIFDSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9148 # 1qlwA.47.268 read from T0287.t2k.many.frag # found chain 1qlwA in training set T0287 47 :MHDFFKQMH 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9149 # 1fjgT.47.58 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 47 :MHDFFKQMH 1fjgT 59 :AESLIDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9150 # 1alu.47.123 read from T0287.t2k.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 T0287 47 :MHDFFKQM 1alu 122 :LIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9151 # 1hz4A.47.219 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 47 :MHDFFKQMH 1hz4A 218 :VRVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9152 # 1r8iA.47.135 read from T0287.t2k.many.frag # found chain 1r8iA in template set T0287 47 :MHDFFKQMH 1r8iA 160 :MQALTEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9153 # 1wbeA.47.157 read from T0287.t2k.many.frag # found chain 1wbeA in template set T0287 47 :MHDFFKQMH 1wbeA 158 :KSDFLKALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9154 # 1moq.48.200 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 48 :HDFFKQMHT 1moq 441 :PSRIEQMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9155 # 1h6kA.48.550 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 48 :HDFFKQMHT 1h6kA 570 :HEVFKTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9156 # 1ow4A.48.100 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 48 :HDFFKQMHT 1ow4A 90 :NDCANQVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9157 # 1zupA.48.291 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)M54 (1zupA)Y286 because G (3-10) conformation "forbidden" or filtered. T0287 48 :HDFFKQ 1zupA 280 :EENLSY T0287 55 :HT 1zupA 287 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=9159 # 1e6iA.48.81 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 48 :HDFFKQMHT 1e6iA 400 :FNNCRMYNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9160 # 1u0fA.48.225 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 48 :HDFFKQMHT 1u0fA 225 :KEWFLEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9161 # 2acvA.48.436 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 48 :HDFFKQMHT 2acvA 437 :KEMSRNAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9162 # 1jqnA.48.38 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 48 :HDFFKQMHT 1jqnA 39 :RKLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9163 # 1w33A.48.73 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 48 :HDFFKQMHT 1w33A 143 :KEILEILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9164 # 1ail.48.43 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 48 :HDFFKQMHT 1ail 44 :RGRGSTLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9165 # 1hz4A.48.220 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1hz4A 219 :RVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=9166 # 2f6lA.48.47 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 48 :HDFFKQMHT 2f6lA 81 :GEDARSQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9167 # 1jeyA.48.521 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 48 :HDFFKQMHT 1jeyA 522 :VDEFKELVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9168 # 1vjxA.48.58 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 48 :HDFFKQMHT 1vjxA 47 :AEIFRKMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9169 # 1ajsA.48.312 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 48 :HDFFKQMHT 1ajsA 313 :PELFHEWTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9170 # 1orjA.48.59 read from T0287.t2k.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)S1068 T0287 48 :HDFFKQM 1orjA 1060 :YDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9171 # 1ei6A.48.221 read from T0287.t2k.many.frag # found chain 1ei6A in template set T0287 48 :HDFFKQMHT 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9172 # 1alu.48.124 read from T0287.t2k.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 T0287 48 :HDFFKQM 1alu 123 :IQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9173 # 1nt2B.48.84 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 48 :HDFFKQMHT 1nt2B 96 :EEIDESINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9174 # 1t98A.48.164 read from T0287.t2k.many.frag # found chain 1t98A in template set T0287 48 :HDFFKQMHT 1t98A 165 :AEIFDSIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9175 # 1wer.48.292 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 48 :HDFFKQMHT 1wer 1006 :SDELRTLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9176 # 1g5tA.48.108 read from T0287.t2k.many.frag # found chain 1g5tA in training set T0287 48 :HDFFKQMHT 1g5tA 109 :WQHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9177 # 1bf5A.48.14 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 48 :HDFFKQMHT 1bf5A 150 :KDKVMCIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9178 # 1nd4A.48.116 read from T0287.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0287)H55 (1nd4A)H124 because H (helix) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1nd4A 117 :ADAMRRL T0287 56 :T 1nd4A 125 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=9180 # 1zx4A.48.72 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1zx4A 214 :CAVGDEM T0287 56 :T 1zx4A 222 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=9182 # 1jixA.48.327 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 48 :HDFFKQMHT 1jixA 328 :HDILNKTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9183 # 1r8iA.48.136 read from T0287.t2k.many.frag # found chain 1r8iA in template set T0287 48 :HDFFKQMHT 1r8iA 161 :QALTEQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9184 # 1tukA.48.31 read from T0287.t2k.many.frag # found chain 1tukA in template set T0287 48 :HDFFKQMHT 1tukA 32 :QGCFCQYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9185 # 1p4xA.48.111 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 48 :HDFFKQMHT 1p4xA 112 :DQIIKQFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9186 # 1fjgT.48.59 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 48 :HDFFKQMHT 1fjgT 60 :ESLIDKAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9187 # 1moq.49.201 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 49 :DFFKQMHTN 1moq 442 :SRIEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9188 # 1h6kA.49.551 read from T0287.t2k.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H55 (1h6kA)A577 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1h6kA)S579 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1h6kA 571 :EVFKTL T0287 56 :T 1h6kA 578 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=9190 # 1e6iA.49.82 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 49 :DFFKQMHTN 1e6iA 401 :NNCRMYNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9191 # 1hz4A.49.221 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1hz4A 220 :VIYWQMT T0287 57 :N 1hz4A 228 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=9193 # 1zupA.49.292 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 49 :DFFKQMHTN 1zupA 281 :ENLSYYLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9194 # 1ow4A.49.101 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 49 :DFFKQMHTN 1ow4A 91 :DCANQVNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9195 # 2acvA.49.437 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 49 :DFFKQMHTN 2acvA 438 :EMSRNAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9196 # 1ail.49.44 read from T0287.t2k.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1ail 45 :GRGSTL T0287 56 :TN 1ail 52 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=9198 # 2f6lA.49.48 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 2f6lA 82 :EDARSQ T0287 56 :TN 2f6lA 89 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=9200 # 1zx4A.49.73 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1zx4A 215 :AVGDEMG T0287 57 :N 1zx4A 223 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=9202 # 1w33A.49.74 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 49 :DFFKQMHTN 1w33A 144 :EILEILKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9203 # 1jqnA.49.39 read from T0287.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1jqnA 40 :KLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=9204 # 1u0fA.49.226 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 49 :DFFKQMHTN 1u0fA 226 :EWFLEAAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9205 # 1sdiA.49.93 read from T0287.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1sdiA 94 :VLERKLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=9206 # 1nd4A.49.117 read from T0287.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0287)N57 (1nd4A)L126 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1nd4A 118 :DAMRRLHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=9207 # 1wer.49.293 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 49 :DFFKQMHTN 1wer 1007 :DELRTLSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9208 # 1jeyA.49.522 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 49 :DFFKQMHTN 1jeyA 523 :DEFKELVYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9209 # 1ajsA.49.313 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 49 :DFFKQMHTN 1ajsA 314 :ELFHEWTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9210 # 1r71A.49.56 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)H55 (1r71A)G179 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1r71A 173 :DIAKEI T0287 56 :TN 1r71A 180 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9212 # 1nt2B.49.85 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 49 :DFFKQMHTN 1nt2B 97 :EIDESINML Number of specific fragments extracted= 1 number of extra gaps= 0 total=9213 # 1tukA.49.32 read from T0287.t2k.many.frag # found chain 1tukA in template set T0287 49 :DFFKQMHTN 1tukA 33 :GCFCQYAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9214 # 1alu.49.125 read from T0287.t2k.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1alu)L133 T0287 49 :DFFKQM 1alu 124 :QFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9215 # 1ei6A.49.222 read from T0287.t2k.many.frag # found chain 1ei6A in template set T0287 49 :DFFKQMHTN 1ei6A 224 :SYFKRYHEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9216 # 1t98A.49.165 read from T0287.t2k.many.frag # found chain 1t98A in template set T0287 49 :DFFKQMHTN 1t98A 166 :EIFDSIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9217 # 1g5tA.49.109 read from T0287.t2k.many.frag # found chain 1g5tA in training set T0287 49 :DFFKQMHTN 1g5tA 110 :QHGKRMLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9218 # 1k78A.49.52 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1k78A 53 :DISRQL T0287 56 :TN 1k78A 60 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9220 # 1mgtA.49.113 read from T0287.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1mgtA 114 :DLAKAL T0287 56 :TN 1mgtA 121 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9222 # 1jixA.49.328 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 49 :DFFKQMHTN 1jixA 329 :DILNKTRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9223 # 1vjxA.49.59 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 49 :DFFKQMHTN 1vjxA 48 :EIFRKMSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9224 # 1cr1A.49.109 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 49 :DFFKQMHTN 1cr1A 380 :QWFDELFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9225 # 1moq.50.202 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 50 :FFKQMHTNK 1moq 443 :RIEQMLSQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9226 # 1hz4A.50.222 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)H55 (1hz4A)T226 because G (3-10) conformation "forbidden" or filtered. T0287 50 :FFKQM 1hz4A 221 :IYWQM T0287 56 :TNK 1hz4A 227 :GDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9228 # 1e6iA.50.83 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 50 :FFKQMHTNK 1e6iA 402 :NCRMYNGEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9229 # 1zupA.50.293 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 50 :FFKQMHTNK 1zupA 282 :NLSYYLTDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9230 # 2acvA.50.438 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 50 :FFKQMHTNK 2acvA 439 :MSRNAVVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9231 # 1ow4A.50.102 read from T0287.t2k.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1ow4A 92 :CANQVN T0287 57 :NK 1ow4A 99 :AY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9233 # 1h6kA.50.552 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 50 :FFKQMHTNK 1h6kA 572 :VFKTLAESD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9234 # 2f6lA.50.49 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQM 2f6lA 83 :DARSQ T0287 56 :T 2f6lA 89 :I T0287 58 :K 2f6lA 91 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=9237 # 1w33A.50.75 read from T0287.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1w33A 145 :ILEILKK T0287 58 :K 1w33A 153 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=9239 # 2cygA.50.57 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQM 2cygA 86 :DVQSL T0287 58 :K 2cygA 94 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=9241 # 1zx4A.50.74 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1zx4A 216 :VGDEMG T0287 57 :NK 1zx4A 223 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=9243 # 1ail.50.45 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 50 :FFKQMHTNK 1ail 46 :RGSTLGLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9244 # 1sdiA.50.94 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 50 :FFKQMHTNK 1sdiA 95 :LERKLSSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9245 # 1wer.50.294 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHTN 1wer 1008 :ELRTLSNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9246 # 1u0fA.50.227 read from T0287.t2k.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1u0fA 227 :WFLEAA T0287 57 :NK 1u0fA 234 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9248 # 1z7lA.50.46 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 T0287 50 :FFKQMHT 1z7lA 662 :NVNQYLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=9249 # 1jqnA.50.40 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 50 :FFKQMHTNK 1jqnA 41 :LSKSSRAGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9250 # 1nd4A.50.118 read from T0287.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0287)H55 (1nd4A)H124 because H (helix) conformation "forbidden" or filtered. T0287 50 :FFKQM 1nd4A 119 :AMRRL T0287 56 :TNK 1nd4A 125 :TLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9252 # 1tukA.50.33 read from T0287.t2k.many.frag # found chain 1tukA in template set T0287 50 :FFKQMHTNK 1tukA 34 :CFCQYAKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9253 # 1jeyA.50.523 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 50 :FFKQMHTNK 1jeyA 524 :EFKELVYPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9254 # 1k78A.50.53 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1k78A 54 :ISRQL T0287 56 :TNK 1k78A 60 :VSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=9256 # 1tu9A.50.11 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)N57 (1tu9A)S17 because E (beta_S) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1tu9A 10 :SYGRCCA T0287 58 :K 1tu9A 18 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=9258 # 1j2zA.50.212 read from T0287.t2k.many.frag # found chain 1j2zA in template set T0287 50 :FFKQMHTNK 1j2zA 213 :LYKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9259 # 1sw5B.50.248 read from T0287.t2k.many.frag # found chain 1sw5B in template set Warning: unaligning (T0287)K58 (1sw5B)K257 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMHTN 1sw5B 249 :LNYQYDVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9260 # 1r71A.50.57 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)N57 (1r71A)S181 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1r71A 174 :IAKEIGK T0287 58 :K 1r71A 182 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=9262 # 1jixA.50.329 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 50 :FFKQMHTNK 1jixA 330 :ILNKTRAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9263 # 1g5tA.50.110 read from T0287.t2k.many.frag # found chain 1g5tA in training set T0287 50 :FFKQMHTNK 1g5tA 111 :HGKRMLADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9264 # 1ajsA.50.314 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 50 :FFKQMHTNK 1ajsA 315 :LFHEWTGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9265 # 1mgtA.50.114 read from T0287.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)M54 (1mgtA)L119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQ 1mgtA 115 :LAKA T0287 56 :TNK 1mgtA 121 :TSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9267 # 2cwyA.50.47 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 50 :FFKQMHTNK 2cwyA 48 :ALHQRRLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9268 # 1moq.51.203 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 51 :FKQMHTNKG 1moq 444 :IEQMLSQDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9269 # 1hz4A.51.223 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1hz4A 222 :YWQMT T0287 57 :NKG 1hz4A 228 :DKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9271 # 2cygA.51.58 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQM 2cygA 87 :VQSL T0287 58 :KG 2cygA 94 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9273 # 1wer.51.295 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)G59 (1wer)G1017 because S (epsilon) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1wer 1009 :LRTLSNER Number of specific fragments extracted= 1 number of extra gaps= 1 total=9274 # 1w33A.51.76 read from T0287.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1w33A 146 :LEILKK T0287 58 :KG 1w33A 153 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9276 # 2acvA.51.439 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 51 :FKQMHTNKG 2acvA 440 :SRNAVVDGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9277 # 1e6iA.51.84 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1e6iA 403 :CRMYNGEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=9278 # 1sdiA.51.95 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 51 :FKQMHTNKG 1sdiA 96 :ERKLSSAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9279 # 1zupA.51.294 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 51 :FKQMHTNKG 1zupA 283 :LSYYLTDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9280 # 1z7lA.51.47 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 51 :FKQMHT 1z7lA 663 :VNQYLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=9281 # 1ow4A.51.103 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 51 :FKQMHTNKG 1ow4A 93 :ANQVNGAYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9282 # 1zx4A.51.75 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 51 :FKQMHTNKG 1zx4A 217 :GDEMGNKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9283 # 1u0fA.51.228 read from T0287.t2k.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1u0fA 228 :FLEAA T0287 57 :NKG 1u0fA 234 :DPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9285 # 1tu9A.51.12 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 51 :FKQMHTNKG 1tu9A 11 :YGRCCASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9286 # 1he1A.51.86 read from T0287.t2k.many.frag # found chain 1he1A in template set T0287 51 :FKQMHTNKG 1he1A 181 :LQQWGTTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9287 # 1h6kA.51.553 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 51 :FKQMHTNKG 1h6kA 573 :FKTLAESDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9288 # 2f6lA.51.50 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 51 :FKQMHTNKG 2f6lA 84 :ARSQHIDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9289 # 1k78A.51.54 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQM 1k78A 55 :SRQL T0287 56 :TNKG 1k78A 60 :VSHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=9291 # 1j2zA.51.213 read from T0287.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0287)H55 (1j2zA)F218 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQM 1j2zA 214 :YKRL T0287 56 :TNKG 1j2zA 219 :RPIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9293 # 1q79A.51.347 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 51 :FKQMHTNKG 1q79A 348 :TDEILLSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9294 # 1tukA.51.34 read from T0287.t2k.many.frag # found chain 1tukA in template set T0287 51 :FKQMHTNKG 1tukA 35 :FCQYAKDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9295 # 1n69A.51.16 read from T0287.t2k.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)G59 (1n69A)T23 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1n69A 15 :QTAVRTNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=9296 # 1ail.51.46 read from T0287.t2k.many.frag # found chain 1ail in template set Warning: unaligning (T0287)N57 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1ail 47 :GSTLGL T0287 58 :KG 1ail 54 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9298 # 1ajsA.51.315 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 51 :FKQMHTNKG 1ajsA 316 :FHEWTGNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9299 # 2bmaA.51.35 read from T0287.t2k.many.frag # found chain 2bmaA in template set T0287 51 :FKQMHTNKG 2bmaA 11 :VMKLDPNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9300 # 1jqnA.51.41 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 51 :FKQMHTNKG 1jqnA 42 :SKSSRAGND Number of specific fragments extracted= 1 number of extra gaps= 0 total=9301 # 1sw5B.51.249 read from T0287.t2k.many.frag # found chain 1sw5B in template set Warning: unaligning (T0287)G59 (1sw5B)K258 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1sw5B 250 :NYQYDVEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9302 # 1jeyA.51.524 read from T0287.t2k.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)G59 (1jeyA)D533 because N (gamma') conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1jeyA 525 :FKELVYPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=9303 # 1z21A.51.62 read from T0287.t2k.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1z21A 100 :LQQFDSF T0287 59 :G 1z21A 108 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=9305 # 1jixA.51.330 read from T0287.t2k.many.frag # found chain 1jixA in training set Warning: unaligning (T0287)N57 (1jixA)K337 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1jixA 331 :LNKTRA T0287 58 :KG 1jixA 338 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9307 # 2cygA.52.59 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 52 :KQM 2cygA 88 :QSL T0287 57 :NKGA 2cygA 93 :NPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9309 # 1sdiA.52.96 read from T0287.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1sdiA 97 :RKLSSA T0287 59 :GA 1sdiA 104 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9311 # 1hz4A.52.224 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 52 :KQMHTNKGA 1hz4A 223 :WQMTGDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9312 # 1wer.52.296 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 52 :KQMHTNKGA 1wer 1010 :RTLSNERGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9313 # 1zupA.52.295 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHT 1zupA 284 :SYYLT T0287 58 :KGA 1zupA 290 :KNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9315 # 1moq.52.204 read from T0287.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1moq 445 :EQMLSQD T0287 60 :A 1moq 453 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=9317 # 2acvA.52.440 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 52 :KQMHTNKGA 2acvA 441 :RNAVVDGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9318 # 1z7lA.52.48 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 52 :KQMHTN 1z7lA 664 :NQYLTD T0287 60 :A 1z7lA 672 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=9320 # 1w33A.52.77 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 52 :KQMHTNKGA 1w33A 147 :EILKKNSEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9321 # 1tu9A.52.13 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 52 :KQMHTNKGA 1tu9A 12 :GRCCASTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9322 # 1e6iA.52.85 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)H55 (1e6iA)N407 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQM 1e6iA 404 :RMY T0287 56 :TNKGA 1e6iA 408 :GENTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9324 # 1he1A.52.87 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1he1A 182 :QQWGTT T0287 59 :GA 1he1A 189 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9326 # 1u0fA.52.229 read from T0287.t2k.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1u0fA 229 :LEAA T0287 57 :NKGA 1u0fA 234 :DPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9328 # 1zx4A.52.76 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1zx4A 218 :DEMG T0287 57 :NKGA 1zx4A 223 :KNLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9330 # 1k78A.52.55 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 1k78A 56 :RQL T0287 56 :TNKGA 1k78A 60 :VSHGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=9332 # 1q79A.52.348 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 52 :KQMHTNKGA 1q79A 349 :DEILLSKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9333 # 2f6lA.52.51 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 52 :KQMHTNKGA 2f6lA 85 :RSQHIDPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9334 # 1fipA.52.78 read from T0287.t2k.many.frag # found chain 1fipA in template set T0287 52 :KQMHTNKGA 1fipA 79 :LMMGINRGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9335 # 1sw5B.52.250 read from T0287.t2k.many.frag # found chain 1sw5B in template set Warning: unaligning (T0287)G59 (1sw5B)K258 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1sw5B 251 :YQYDVEK T0287 60 :A 1sw5B 259 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=9337 # 1w9cA.52.195 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 52 :KQMHTNKGA 1w9cA 902 :QNVAQEEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9338 # 1y0zA.52.44 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 52 :KQMHTNKGA 1y0zA 45 :QTIKTQKHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9339 # 1n69A.52.17 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 52 :KQMHTNKGA 1n69A 16 :TAVRTNSTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9340 # 1jixA.52.331 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 52 :KQMHTNKGA 1jixA 332 :NKTRAKKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9341 # 1ykjA.52.368 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 52 :KQMHTNKGA 1ykjA 1369 :EYYLGSEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9342 # 2dpmA.52.71 read from T0287.t2k.many.frag # found chain 2dpmA in training set T0287 52 :KQMHTNKGA 2dpmA 72 :QQIKDNPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9343 # 1ail.52.47 read from T0287.t2k.many.frag # found chain 1ail in template set Warning: unaligning (T0287)N57 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHT 1ail 48 :STLGL T0287 58 :KGA 1ail 54 :IEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9345 # 2a6sA.52.13 read from T0287.t2k.many.frag # found chain 2a6sA in template set Warning: unaligning (T0287)K58 (2a6sA)D20 because D (zeta) conformation "forbidden" or filtered. T0287 52 :KQMHTN 2a6sA 14 :LYWQET T0287 59 :GA 2a6sA 21 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9347 # 1h6kA.52.554 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 52 :KQMHTNKGA 1h6kA 574 :KTLAESDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9348 # 1ow4A.52.104 read from T0287.t2k.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. T0287 52 :KQMH 1ow4A 94 :NQVN T0287 57 :NKGA 1ow4A 99 :AYPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9350 # 1t98A.52.168 read from T0287.t2k.many.frag # found chain 1t98A in template set T0287 52 :KQMHTNKGA 1t98A 169 :DSIDLTQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9351 # 1sdiA.53.97 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 53 :QMHTNKGAL 1sdiA 98 :KLSSAKGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9352 # 2cygA.53.60 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 53 :QM 2cygA 89 :SL T0287 57 :NKGAL 2cygA 93 :NPSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9354 # 1zupA.53.296 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 53 :QMHTNKGAL 1zupA 285 :YYLTDKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9355 # 1wer.53.297 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHTN 1wer 1011 :TLSNE T0287 59 :GAL 1wer 1017 :GAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=9357 # 1hz4A.53.225 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 53 :QMHTNKGAL 1hz4A 224 :QMTGDKAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9358 # 1z7lA.53.49 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 53 :QMHTN 1z7lA 665 :QYLTD T0287 60 :AL 1z7lA 672 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9360 # 1tu9A.53.14 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 53 :QMHTNKGAL 1tu9A 13 :RCCASTGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9361 # 2acvA.53.441 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 53 :QMHTNKGAL 2acvA 442 :NAVVDGGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9362 # 1moq.53.205 read from T0287.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0287)K58 (1moq)D451 because N (gamma') conformation "forbidden" or filtered. T0287 53 :QMHTN 1moq 446 :QMLSQ T0287 59 :GAL 1moq 452 :KRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=9364 # 1w33A.53.78 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 53 :QMHTNKGAL 1w33A 148 :ILKKNSEHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9365 # 1he1A.53.88 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QMHTN 1he1A 183 :QWGTT T0287 59 :GAL 1he1A 189 :GAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9367 # 1zx4A.53.77 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 53 :QM 1zx4A 219 :EM T0287 57 :NKGAL 1zx4A 223 :KNLEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=9369 # 1k78A.53.56 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)M54 (1k78A)L58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 53 :Q 1k78A 57 :Q T0287 56 :TNKGAL 1k78A 60 :VSHGCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9371 # 2f6lA.53.52 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 53 :QMHTNKGAL 2f6lA 86 :SQHIDPDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9372 # 1e6iA.53.86 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)K58 (1e6iA)N410 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMHTN 1e6iA 405 :MYNGE T0287 59 :GAL 1e6iA 411 :TSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9374 # 1u0fA.53.230 read from T0287.t2k.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1u0fA 230 :EAA T0287 57 :NKGAL 1u0fA 234 :DPSAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9376 # 1ykjA.53.369 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 53 :QMHTNKGAL 1ykjA 1370 :YYLGSEAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9377 # 1y0zA.53.45 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 53 :QMHTNKGAL 1y0zA 46 :TIKTQKHYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9378 # 1urjA.53.604 read from T0287.t2k.many.frag # found chain 1urjA in template set T0287 53 :QMHTNKGAL 1urjA 605 :TIITNREAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9379 # 2bnxA.53.245 read from T0287.t2k.many.frag # found chain 2bnxA in template set T0287 53 :QMHTNKGAL 2bnxA 376 :MEMDDFGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9380 # 1w9cA.53.196 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 53 :QMHTNKGAL 1w9cA 903 :NVAQEEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9381 # 1q79A.53.349 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 53 :QMHTNKGAL 1q79A 350 :EILLSKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9382 # 1fipA.53.79 read from T0287.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QM 1fipA 80 :MM T0287 56 :TNKGAL 1fipA 83 :INRGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9384 # 1tffA.53.119 read from T0287.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0287)N57 (1tffA)D124 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHT 1tffA 120 :KVFN T0287 58 :KGAL 1tffA 125 :QSAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9386 # 1jixA.53.332 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 53 :QMHTNKGAL 1jixA 333 :KTRAKKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9387 # 1dk0A.53.138 read from T0287.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1dk0A 139 :LMS T0287 57 :NKGAL 1dk0A 143 :DTGAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9389 # 1tzvA.53.52 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 53 :QMHTNKGAL 1tzvA 53 :GIKENLSMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9390 # 1b25A.53.375 read from T0287.t2k.many.frag # found chain 1b25A in template set Warning: unaligning (T0287)N57 (1b25A)R380 because L (left) conformation "forbidden" or filtered. T0287 53 :QMHT 1b25A 376 :DIAY T0287 58 :KGAL 1b25A 381 :KGEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9392 # 2dpmA.53.72 read from T0287.t2k.many.frag # found chain 2dpmA in training set T0287 53 :QMHTNKGAL 2dpmA 73 :QIKDNPQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9393 # 1z21A.53.64 read from T0287.t2k.many.frag # found chain 1z21A in template set T0287 53 :QMHTNKGAL 1z21A 102 :QFDSFGKRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9394 # 1sdiA.54.98 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 54 :MHTNKGALD 1sdiA 99 :LSSAKGALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9395 # 2cygA.54.61 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 54 :M 2cygA 90 :L T0287 57 :NKGALD 2cygA 93 :NPSAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=9397 # 1zupA.54.297 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 54 :MHTNKGALD 1zupA 286 :YLTDKNYMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9398 # 1wer.54.298 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 54 :MHTNKGALD 1wer 1012 :LSNERGAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9399 # 1tu9A.54.15 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 54 :MHTNKGALD 1tu9A 14 :CCASTGFFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9400 # 1z7lA.54.50 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 54 :MHT 1z7lA 666 :YLT T0287 60 :ALD 1z7lA 672 :FVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9402 # 1hz4A.54.226 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1hz4A 225 :MT T0287 57 :NKGALD 1hz4A 228 :DKAAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9404 # 1zx4A.54.78 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1zx4A 220 :MG T0287 57 :NKGALD 1zx4A 223 :KNLEFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9406 # 1k78A.54.57 read from T0287.t2k.many.frag # found chain 1k78A in template set T0287 54 :MHTNKGALD 1k78A 58 :LRVSHGCVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9407 # 1dk0A.54.139 read from T0287.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1dk0A 140 :MS T0287 57 :NKGALD 1dk0A 143 :DTGALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9409 # 2acvA.54.442 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 54 :MHTNKGALD 2acvA 443 :AVVDGGSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9410 # 1he1A.54.89 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :MHTN 1he1A 184 :WGTT T0287 59 :GALD 1he1A 189 :GAAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9412 # 2f6lA.54.53 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 54 :M 2f6lA 87 :Q T0287 56 :TNKGALD 2f6lA 89 :IDPDYVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=9414 # 1w33A.54.79 read from T0287.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 54 :MHT 1w33A 149 :LKK T0287 58 :KGALD 1w33A 153 :SEHYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=9416 # 1zs4A.54.33 read from T0287.t2k.many.frag # found chain 1zs4A in template set T0287 54 :MHTNKGALD 1zs4A 33 :VGVDKSQIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9417 # 2bnxA.54.246 read from T0287.t2k.many.frag # found chain 2bnxA in template set T0287 54 :MHTNKGALD 2bnxA 377 :EMDDFGEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9418 # 1y0zA.54.46 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 54 :MHTNKGALD 1y0zA 47 :IKTQKHYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9419 # 1fipA.54.80 read from T0287.t2k.many.frag # found chain 1fipA in template set T0287 54 :MHTNKGALD 1fipA 81 :MGINRGTLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9420 # 1ho8A.54.254 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 54 :MHTNKGALD 1ho8A 253 :LTFNPVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9421 # 1xpjA.54.50 read from T0287.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 54 :MHTN 1xpjA 51 :MRTY T0287 59 :GALD 1xpjA 56 :GNVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=9423 # 1ykjA.54.370 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 54 :MHTNKGALD 1ykjA 1371 :YLGSEAGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9424 # 1e6iA.54.87 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 54 :MHTNKGALD 1e6iA 406 :YNGENTSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9425 # 1moq.54.206 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 54 :MHTNKGALD 1moq 447 :MLSQDKRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9426 # 1tffA.54.120 read from T0287.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0287)N57 (1tffA)D124 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHT 1tffA 121 :VFN T0287 58 :KGALD 1tffA 125 :QSASD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9428 # 1cxzB.54.53 read from T0287.t2k.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)N57 (1cxzB)S69 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHT 1cxzB 66 :LGR T0287 58 :KGALD 1cxzB 70 :LGPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9430 # 1w9cA.54.197 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 54 :MHTNKGALD 1w9cA 904 :VAQEEAAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9431 # 1cg5B.54.90 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 54 :MHTNKGALD 1cg5B 91 :IGVDTQNFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9432 # 1j75A.54.34 read from T0287.t2k.many.frag # found chain 1j75A in template set T0287 54 :MHTNKGALD 1j75A 138 :CQVPKKTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9433 # 1z21A.54.65 read from T0287.t2k.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 54 :MHTN 1z21A 103 :FDSF T0287 59 :GALD 1z21A 108 :KRWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9435 # 1u0fA.54.231 read from T0287.t2k.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1u0fA 231 :AA T0287 57 :NKGALD 1u0fA 234 :DPSAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9437 # 1sdiA.55.99 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 55 :HTNKGALDK 1sdiA 100 :SSAKGALDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9438 # 2cygA.55.62 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDK 2cygA 94 :PSAAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=9439 # 1tu9A.55.16 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)N57 (1tu9A)S17 because E (beta_S) conformation "forbidden" or filtered. T0287 55 :HT 1tu9A 15 :CA T0287 58 :KGALDK 1tu9A 18 :TGFFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9441 # 1wer.55.299 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 55 :HTNKGALDK 1wer 1013 :SNERGAQQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9442 # 1zupA.55.298 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 55 :HTNKGALDK 1zupA 287 :LTDKNYMNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9443 # 1hz4A.55.227 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1hz4A 226 :T T0287 57 :NKGALDK 1hz4A 228 :DKAAAAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=9445 # 1z7lA.55.51 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 55 :HTN 1z7lA 667 :LTD T0287 60 :ALDK 1z7lA 672 :FVER Number of specific fragments extracted= 2 number of extra gaps= 1 total=9447 # 1dk0A.55.140 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 55 :HTNKGALDK 1dk0A 141 :SGDTGALET Number of specific fragments extracted= 1 number of extra gaps= 0 total=9448 # 1zx4A.55.79 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDK 1zx4A 223 :KNLEFDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=9449 # 1k78A.55.58 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1k78A 60 :VSHGCVSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9450 # 2acvA.55.443 read from T0287.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HTN 2acvA 444 :VVD T0287 59 :GALDK 2acvA 448 :GSSLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=9452 # 1zc6A.55.221 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 55 :HTNKGALDK 1zc6A 222 :ARVDPEADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9453 # 2bnxA.55.247 read from T0287.t2k.many.frag # found chain 2bnxA in template set T0287 55 :HTNKGALDK 2bnxA 378 :MDDFGEVFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9454 # 1he1A.55.90 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HTN 1he1A 185 :GTT T0287 59 :GALDK 1he1A 189 :GAASQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=9456 # 1e6iA.55.88 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HTNK 1e6iA 407 :NGEN T0287 60 :ALDK 1e6iA 412 :SYYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9458 # 1cxzB.55.54 read from T0287.t2k.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)G59 (1cxzB)G71 because H (helix) conformation "forbidden" or filtered. T0287 55 :HTNK 1cxzB 67 :GRSL T0287 60 :ALDK 1cxzB 72 :PVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9460 # 1xpjA.55.51 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 55 :HTNKGALDK 1xpjA 52 :RTYEGNVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9461 # 1cg5B.55.91 read from T0287.t2k.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)N57 (1cg5B)D94 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 1cg5B 92 :GV T0287 58 :KGALDK 1cg5B 95 :TQNFKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9463 # 1zs4A.55.34 read from T0287.t2k.many.frag # found chain 1zs4A in template set T0287 55 :HTNKGALDK 1zs4A 34 :GVDKSQISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9464 # 1tffA.55.121 read from T0287.t2k.many.frag # found chain 1tffA in template set T0287 55 :HTNKGALDK 1tffA 122 :FNDQSASDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9465 # 2f6lA.55.54 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 55 :HTNKGALDK 2f6lA 88 :HIDPDYVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9466 # 1y6xA.55.34 read from T0287.t2k.many.frag # found chain 1y6xA in training set Warning: unaligning (T0287)N57 (1y6xA)G37 because S (epsilon) conformation "forbidden" or filtered. T0287 55 :HT 1y6xA 35 :DG T0287 58 :KGALDK 1y6xA 38 :VHALGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9468 # 1j75A.55.35 read from T0287.t2k.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)H55 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1j75A 140 :VPKKTLNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=9469 # 1w33A.55.80 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 55 :HTNKGALDK 1w33A 150 :KKNSEHYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9470 # 1ho8A.55.255 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 55 :HTNKGALDK 1ho8A 254 :TFNPVFANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9471 # 1ykjA.55.371 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 55 :HTNKGALDK 1ykjA 1372 :LGSEAGLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9472 # 1urjA.55.606 read from T0287.t2k.many.frag # found chain 1urjA in template set Warning: unaligning (T0287)T56 (1urjA)T608 because G (3-10) conformation "forbidden" or filtered. T0287 55 :H 1urjA 607 :I T0287 57 :NKGALDK 1urjA 609 :NREALHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=9474 # 1z21A.55.66 read from T0287.t2k.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)N57 (1z21A)F106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 55 :HT 1z21A 104 :DS T0287 59 :GALDK 1z21A 108 :KRWEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9476 # 1fipA.55.81 read from T0287.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1fipA 83 :INRGTLRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9477 # 1ikpA.55.301 read from T0287.t2k.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)H55 (1ikpA)R302 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1ikpA 303 :LSWNQVDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=9478 # 1sdiA.56.100 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 56 :TNKGALDKV 1sdiA 101 :SAKGALDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9479 # 1tu9A.56.17 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TN 1tu9A 16 :AS T0287 59 :GALDKV 1tu9A 19 :GFFDDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=9481 # 2cygA.56.63 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDKV 2cygA 93 :NPSAAGDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=9482 # 1wer.56.300 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 1wer 1014 :N T0287 58 :KGALDKV 1wer 1016 :RGAQQHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9484 # 1dk0A.56.141 read from T0287.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1dk0A)G145 because H (helix) conformation "forbidden" or filtered. T0287 57 :NK 1dk0A 143 :DT T0287 60 :ALDKV 1dk0A 146 :ALETA Number of specific fragments extracted= 2 number of extra gaps= 2 total=9486 # 1zc6A.56.222 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 56 :TNKGALDKV 1zc6A 223 :RVDPEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9487 # 1zupA.56.299 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 56 :TNKGALDKV 1zupA 288 :TDKNYMNTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9488 # 1xpjA.56.52 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 56 :TNKGALDKV 1xpjA 53 :TYEGNVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9489 # 1hz4A.56.228 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1hz4A 228 :DKAAAANW Number of specific fragments extracted= 1 number of extra gaps= 1 total=9490 # 1ikpA.56.302 read from T0287.t2k.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)A60 (1ikpA)Q307 because G (3-10) conformation "forbidden" or filtered. T0287 56 :TNKG 1ikpA 303 :LSWN T0287 61 :LDKV 1ikpA 308 :VDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9492 # 1k78A.56.59 read from T0287.t2k.many.frag # found chain 1k78A in template set T0287 56 :TNKGALDKV 1k78A 60 :VSHGCVSKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9493 # 2bnxA.56.248 read from T0287.t2k.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)N57 (2bnxA)D380 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 2bnxA 379 :D T0287 58 :KGALDKV 2bnxA 381 :FGEVFQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=9495 # 1z7lA.56.52 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 56 :TN 1z7lA 668 :TD T0287 60 :ALDKV 1z7lA 672 :FVERT Number of specific fragments extracted= 2 number of extra gaps= 1 total=9497 # 1zx4A.56.80 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1zx4A 223 :KNLEFDQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9498 # 1q2lA.56.840 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TNK 1q2lA 864 :QAP T0287 61 :LDKV 1q2lA 869 :LGEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9500 # 1cxzB.56.55 read from T0287.t2k.many.frag # found chain 1cxzB in template set T0287 56 :TNKGALDKV 1cxzB 68 :RSLGPVELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9501 # 1y6xA.56.35 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 56 :TNKGALDKV 1y6xA 36 :GGVHALGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9502 # 1j75A.56.36 read from T0287.t2k.many.frag # found chain 1j75A in template set T0287 56 :TNKGALDKV 1j75A 140 :VPKKTLNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9503 # 1zs4A.56.35 read from T0287.t2k.many.frag # found chain 1zs4A in template set T0287 56 :TNKGALDKV 1zs4A 35 :VDKSQISRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9504 # 1ykjA.56.372 read from T0287.t2k.many.frag # found chain 1ykjA in template set Warning: unaligning (T0287)N57 (1ykjA)S1374 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 1ykjA 1373 :G T0287 58 :KGALDKV 1ykjA 1375 :EAGLATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=9506 # 1tzvA.56.55 read from T0287.t2k.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)N57 (1tzvA)N57 because G (3-10) conformation "forbidden" or filtered. T0287 56 :T 1tzvA 56 :E T0287 58 :KGALDKV 1tzvA 58 :LSMIDDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9508 # 1e6iA.56.89 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TNK 1e6iA 408 :GEN T0287 60 :ALDKV 1e6iA 412 :SYYKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9510 # 1cg5B.56.92 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 56 :TNKGALDKV 1cg5B 93 :VDTQNFKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9511 # 2acvA.56.444 read from T0287.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)N57 (2acvA)D446 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 2acvA 445 :V T0287 58 :KGALDKV 2acvA 447 :GGSSLIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9513 # 1he1A.56.91 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)N57 (1he1A)T187 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 1he1A 186 :T T0287 58 :KGALDKV 1he1A 188 :GGAASQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9515 # 2aqlA.56.58 read from T0287.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKV 2aqlA 212 :YAVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9516 # 1tffA.56.122 read from T0287.t2k.many.frag # found chain 1tffA in template set T0287 56 :TNKGALDKV 1tffA 123 :NDQSASDHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9517 # 1z21A.56.67 read from T0287.t2k.many.frag # found chain 1z21A in template set T0287 56 :TNKGALDKV 1z21A 105 :SFGKRWEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9518 # 1qoyA.56.216 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 56 :TNKGALDKV 1qoyA 202 :VVEGKLIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9519 # 1w33A.56.81 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 56 :TNKGALDKV 1w33A 151 :KNSEHYNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=9520 # 1tu9A.57.18 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 57 :NKGALDKVL 1tu9A 17 :STGFFDDFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9521 # 1zc6A.57.223 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 57 :NKGALDKVL 1zc6A 224 :VDPEADALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9522 # 1ikpA.57.303 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 57 :NKGALDKVL 1ikpA 304 :SWNQVDQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9523 # 2cygA.57.64 read from T0287.t2k.many.frag # found chain 2cygA in template set T0287 57 :NKGALDKVL 2cygA 93 :NPSAAGDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9524 # 1xpjA.57.53 read from T0287.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1xpjA)N57 because N (gamma') conformation "forbidden" or filtered. T0287 57 :N 1xpjA 54 :Y T0287 59 :G 1xpjA 56 :G T0287 61 :LDKVL 1xpjA 58 :VGKIN Number of specific fragments extracted= 3 number of extra gaps= 2 total=9527 # 1dk0A.57.142 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 57 :NKGALDKVL 1dk0A 143 :DTGALETAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9528 # 1sdiA.57.101 read from T0287.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1sdiA 103 :KGALDTLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=9529 # 1wer.57.301 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 57 :N 1wer 1015 :E T0287 59 :GALDKVL 1wer 1017 :GAQQHVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9531 # 1zx4A.57.81 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)N57 (1zx4A)K223 because E (beta_S) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1zx4A 224 :NLEFDQLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=9532 # 2aqlA.57.59 read from T0287.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVL 2aqlA 212 :YAVNEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9533 # 1q2lA.57.841 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 57 :NK 1q2lA 865 :AP T0287 61 :LDKVL 1q2lA 869 :LGEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9535 # 1y6xA.57.36 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 57 :NKGALDKVL 1y6xA 37 :GVHALGKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9536 # 1hz4A.57.229 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 57 :NKGALDKVL 1hz4A 228 :DKAAAANWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9537 # 1k78A.57.60 read from T0287.t2k.many.frag # found chain 1k78A in template set T0287 57 :NKGALDKVL 1k78A 61 :SHGCVSKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9538 # 1ykjA.57.373 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 57 :NKGALDKVL 1ykjA 1374 :SEAGLATIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9539 # 1z7lA.57.53 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 57 :N 1z7lA 669 :D T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9541 # 1tzvA.57.56 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 57 :NKGALDKVL 1tzvA 57 :NLSMIDDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9542 # 1cxzB.57.56 read from T0287.t2k.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)G59 (1cxzB)G71 because H (helix) conformation "forbidden" or filtered. T0287 57 :NK 1cxzB 69 :SL T0287 60 :ALDKVL 1cxzB 72 :PVELLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9544 # 1zupA.57.300 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 57 :NKGALDKVL 1zupA 289 :DKNYMNTRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9545 # 1j75A.57.37 read from T0287.t2k.many.frag # found chain 1j75A in template set T0287 57 :NKGALDKVL 1j75A 141 :PKKTLNQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9546 # 1qoyA.57.217 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 57 :NKGALDKVL 1qoyA 203 :VEGKLIPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9547 # 1mw9X.57.555 read from T0287.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)N57 (1mw9X)H556 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1mw9X)A558 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :K 1mw9X 557 :E T0287 60 :ALDKVL 1mw9X 559 :EWKAVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=9549 # 2bnxA.57.249 read from T0287.t2k.many.frag # found chain 2bnxA in template set T0287 57 :NKGALDKVL 2bnxA 380 :DFGEVFQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=9550 # 1zs4A.57.36 read from T0287.t2k.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)N57 (1zs4A)D36 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1zs4A 37 :KSQISRWK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9551 # 1cg5B.57.93 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 57 :NKGALDKVL 1cg5B 94 :DTQNFKLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9552 # 1e6iA.57.90 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 57 :NK 1e6iA 409 :EN T0287 60 :ALDKVL 1e6iA 412 :SYYKYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9554 # 1zk8A.57.107 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 57 :NKGALDKVL 1zk8A 108 :RDEEVRKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9555 # 1g3kA.57.66 read from T0287.t2k.many.frag # found chain 1g3kA in template set Warning: unaligning (T0287)K58 (1g3kA)Q68 because L (left) conformation "forbidden" or filtered. T0287 57 :N 1g3kA 67 :H T0287 59 :GALDKVL 1g3kA 69 :GHLLKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9557 # 1zpyA.57.73 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)K58 (1zpyA)D75 because D (zeta) conformation "forbidden" or filtered. T0287 57 :N 1zpyA 74 :C T0287 59 :GALDKVL 1zpyA 76 :PAFDKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9559 # 1ho8A.57.257 read from T0287.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N57 (1ho8A)N256 because D (zeta) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1ho8A 257 :PVFANELV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9560 # 1zc6A.58.224 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 58 :KGALDKVLR 1zc6A 225 :DPEADALLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9561 # 1tu9A.58.19 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 58 :KGALDKVLR 1tu9A 18 :TGFFDDFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9562 # 1xpjA.58.54 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 58 :KGALDKVLR 1xpjA 55 :EGNVGKINI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9563 # 1y6xA.58.37 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 58 :KGALDKVLR 1y6xA 38 :VHALGKKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9564 # 1ikpA.58.304 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 58 :KGALDKVLR 1ikpA 305 :WNQVDQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9565 # 1dk0A.58.143 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 58 :KGALDKVLR 1dk0A 144 :TGALETALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9566 # 2aqlA.58.60 read from T0287.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVLR 2aqlA 212 :YAVNEVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=9567 # 1q2lA.58.842 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :K 1q2lA 866 :P T0287 61 :LDKVLR 1q2lA 869 :LGEEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9569 # 2cygA.58.65 read from T0287.t2k.many.frag # found chain 2cygA in template set T0287 58 :KGALDKVLR 2cygA 94 :PSAAGDWIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9570 # 1tzvA.58.57 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 58 :KGALDKVLR 1tzvA 58 :LSMIDDLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9571 # 2f5xA.58.285 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 58 :KGALDKVLR 2f5xA 274 :PEALQAKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9572 # 1qoyA.58.218 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 58 :KGALDKVLR 1qoyA 204 :EGKLIPELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9573 # 1zx4A.58.82 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 58 :KGALDKVLR 1zx4A 224 :NLEFDQLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9574 # 1zk8A.58.108 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 58 :KGALDKVLR 1zk8A 109 :DEEVRKAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9575 # 1hz4A.58.230 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 58 :KGALDKVLR 1hz4A 229 :KAAAANWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9576 # 1p4cA.58.318 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 58 :KGALDKVLR 1p4cA 319 :ETGVDEVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9577 # 1wer.58.302 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 58 :KGALDKVLR 1wer 1016 :RGAQQHVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9578 # 1mw9X.58.556 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 58 :KGALDKVLR 1mw9X 557 :EAEWKAVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9579 # 1po5A.58.119 read from T0287.t2k.many.frag # found chain 1po5A in training set T0287 58 :KGALDKVLR 1po5A 139 :KRSVEERIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9580 # 1zpyA.58.74 read from T0287.t2k.many.frag # found chain 1zpyA in template set T0287 58 :KGALDKVLR 1zpyA 75 :DPAFDKELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9581 # 1j75A.58.38 read from T0287.t2k.many.frag # found chain 1j75A in template set T0287 58 :KGALDKVLR 1j75A 142 :KKTLNQVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9582 # 1z7lA.58.54 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 60 :ALDKVLR 1z7lA 672 :FVERTLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=9583 # 1k78A.58.61 read from T0287.t2k.many.frag # found chain 1k78A in template set T0287 58 :KGALDKVLR 1k78A 62 :HGCVSKILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9584 # 1fjgT.58.73 read from T0287.t2k.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1fjgT)N75 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLR 1fjgT 76 :AAARRKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=9585 # 1ykjA.58.374 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 58 :KGALDKVLR 1ykjA 1375 :EAGLATIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9586 # 1ho8A.58.258 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 58 :KGALDKVLR 1ho8A 257 :PVFANELVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9587 # 1zs4A.58.37 read from T0287.t2k.many.frag # found chain 1zs4A in template set T0287 58 :KGALDKVLR 1zs4A 37 :KSQISRWKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9588 # 1sdiA.58.102 read from T0287.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1sdiA 104 :GALDTLGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=9589 # 1cg5B.58.94 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 58 :KGALDKVLR 1cg5B 95 :TQNFKLLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9590 # 1cxzB.58.57 read from T0287.t2k.many.frag # found chain 1cxzB in template set T0287 58 :KGALDKVLR 1cxzB 70 :LGPVELLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9591 # 1zc6A.59.225 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 59 :GALDKVLRN 1zc6A 226 :PEADALLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9592 # 1tu9A.59.20 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 59 :GALDKVLRN 1tu9A 19 :GFFDDFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9593 # 1y6xA.59.38 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 59 :GALDKVLRN 1y6xA 39 :HALGKKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9594 # 1ikpA.59.305 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 59 :GALDKVLRN 1ikpA 306 :NQVDQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9595 # 2f5xA.59.286 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 59 :GALDKVLRN 2f5xA 275 :EALQAKVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9596 # 1xpjA.59.55 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 59 :GALDKVLRN 1xpjA 56 :GNVGKINIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9597 # 1zx4A.59.83 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 59 :GALDKVLRN 1zx4A 225 :LEFDQLIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9598 # 1p4cA.59.319 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 59 :GALDKVLRN 1p4cA 320 :TGVDEVLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9599 # 1zk8A.59.109 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 59 :GALDKVLRN 1zk8A 110 :EEVRKAGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9600 # 2aqlA.59.61 read from T0287.t2k.many.frag # found chain 2aqlA in template set T0287 59 :GALDKVLRN 2aqlA 212 :YAVNEVVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9601 # 1mw9X.59.557 read from T0287.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)G59 (1mw9X)A558 because Y (epsilon') conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1mw9X 559 :EWKAVLDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=9602 # 1tzvA.59.58 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 59 :GALDKVLRN 1tzvA 59 :SMIDDLISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9603 # 1ho8A.59.259 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 59 :GALDKVLRN 1ho8A 258 :VFANELVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9604 # 1q2lA.59.843 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9605 # 1fjgT.59.74 read from T0287.t2k.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLRN 1fjgT 76 :AAARRKSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=9606 # 2cygA.59.66 read from T0287.t2k.many.frag # found chain 2cygA in template set T0287 59 :GALDKVLRN 2cygA 95 :SAAGDWIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9607 # 1or7A.59.46 read from T0287.t2k.many.frag # found chain 1or7A in template set T0287 59 :GALDKVLRN 1or7A 44 :GDVPDVVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9608 # 1dk0A.59.144 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 59 :GALDKVLRN 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9609 # 1h6pA.59.129 read from T0287.t2k.many.frag # found chain 1h6pA in template set T0287 59 :GALDKVLRN 1h6pA 172 :EKASKILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9610 # 1qoyA.59.219 read from T0287.t2k.many.frag # found chain 1qoyA in template set Warning: unaligning (T0287)A60 (1qoyA)K206 because G (3-10) conformation "forbidden" or filtered. T0287 59 :G 1qoyA 205 :G T0287 61 :LDKVLRN 1qoyA 207 :LIPELKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=9612 # 1po5A.59.120 read from T0287.t2k.many.frag # found chain 1po5A in training set T0287 59 :GALDKVLRN 1po5A 140 :RSVEERIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9613 # 1a6m.59.128 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 59 :GALDKVLRN 1a6m 129 :GAMNKALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9614 # 1hz4A.59.231 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 59 :GALDKVLRN 1hz4A 230 :AAAANWLRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9615 # 1jk0B.59.240 read from T0287.t2k.many.frag # found chain 1jk0B in template set T0287 59 :GALDKVLRN 1jk0B 241 :KIIEKIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9616 # 1ykjA.59.375 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 59 :GALDKVLRN 1ykjA 1376 :AGLATIAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9617 # 1xp8A.59.179 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 59 :GALDKVLRN 1xp8A 177 :GLQARLMSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9618 # 1cg5B.59.95 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 59 :GALDKVLRN 1cg5B 96 :QNFKLLGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9619 # 1dlwA.59.71 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 59 :GALDKVLRN 1dlwA 72 :GVSNAQFTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9620 # 1psrA.59.28 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 59 :GALDKVLRN 1psrA 29 :PSLLTMMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9621 # 1wa5C.59.393 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 59 :GALDKVLRN 1wa5C 394 :VLVTNIFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9622 # 1zc6A.60.226 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 60 :ALDKVLRNY 1zc6A 227 :EADALLRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9623 # 2f5xA.60.287 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 60 :ALDKVLRNY 2f5xA 276 :ALQAKVKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9624 # 1y6xA.60.39 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 60 :ALDKVLRNY 1y6xA 40 :ALGKKLLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9625 # 1mw9X.60.558 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 60 :ALDKVLRNY 1mw9X 559 :EWKAVLDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9626 # 1tu9A.60.21 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 60 :ALDKVLRNY 1tu9A 20 :FFDDFYRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9627 # 1tzvA.60.59 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 60 :ALDKVLRNY 1tzvA 60 :MIDDLISRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9628 # 1p4cA.60.320 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 60 :ALDKVLRNY 1p4cA 321 :GVDEVLTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9629 # 1zk8A.60.110 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 60 :ALDKVLRNY 1zk8A 111 :EVRKAGDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9630 # 1ikpA.60.306 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 60 :ALDKVLRNY 1ikpA 307 :QVDQVIRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9631 # 1qoyA.60.220 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 60 :ALDKVLRNY 1qoyA 206 :KLIPELKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9632 # 1h6pA.60.130 read from T0287.t2k.many.frag # found chain 1h6pA in template set T0287 60 :ALDKVLRNY 1h6pA 173 :KASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9633 # 2aqlA.60.62 read from T0287.t2k.many.frag # found chain 2aqlA in template set T0287 60 :ALDKVLRNY 2aqlA 213 :AVNEVVAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9634 # 1ho8A.60.260 read from T0287.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)Y68 (1ho8A)Y267 because G (3-10) conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1ho8A 259 :FANELVQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9635 # 1fjgT.60.75 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 60 :ALDKVLRNY 1fjgT 76 :AAARRKSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9636 # 1psrA.60.29 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 60 :ALDKVLRNY 1psrA 30 :SLLTMMKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9637 # 1wa5C.60.394 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 60 :ALDKVLRNY 1wa5C 395 :LVTNIFLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9638 # 1xp8A.60.180 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 60 :ALDKVLRNY 1xp8A 178 :LQARLMSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9639 # 1bgf.60.100 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 60 :ALDKVLRNY 1bgf 100 :HVAVVISNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9640 # 1xpjA.60.56 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 60 :ALDKVLRNY 1xpjA 57 :NVGKINIHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9641 # 1q2lA.60.844 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1q2lA 869 :LGEEASKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9642 # 1a6m.60.129 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 60 :ALDKVLRNY 1a6m 130 :AMNKALELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9643 # 1po5A.60.121 read from T0287.t2k.many.frag # found chain 1po5A in training set T0287 60 :ALDKVLRNY 1po5A 141 :SVEERIQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9644 # 1or7A.60.47 read from T0287.t2k.many.frag # found chain 1or7A in template set Warning: unaligning (T0287)A60 (1or7A)D45 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1or7A 46 :VPDVVQEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=9645 # 1dk0A.60.145 read from T0287.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 T0287 60 :ALDKVLRN 1dk0A 146 :ALETALNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=9646 # 1zx4A.60.84 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 60 :ALDKVLRNY 1zx4A 226 :EFDQLIQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9647 # 1txjA.60.85 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 60 :ALDKVLRNY 1txjA 86 :EYSVYIKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9648 # 2cygA.60.67 read from T0287.t2k.many.frag # found chain 2cygA in template set T0287 60 :ALDKVLRNY 2cygA 96 :AAGDWIRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9649 # 1jk0B.60.241 read from T0287.t2k.many.frag # found chain 1jk0B in template set T0287 60 :ALDKVLRNY 1jk0B 242 :IIEKIITEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9650 # 1cfr.60.33 read from T0287.t2k.many.frag # found chain 1cfr in template set T0287 60 :ALDKVLRNY 1cfr 34 :EFSKVLSGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9651 # 2bnlA.60.82 read from T0287.t2k.many.frag # found chain 2bnlA in template set T0287 60 :ALDKVLRNY 2bnlA 83 :FLATALAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9652 # 1zc6A.61.227 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 61 :LDKVLRNYM 1zc6A 228 :ADALLRQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9653 # 2f5xA.61.288 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 61 :LDKVLRNYM 2f5xA 277 :LQAKVKQQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9654 # 1mw9X.61.559 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 61 :LDKVLRNYM 1mw9X 560 :WKAVLDHFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9655 # 1tu9A.61.22 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 61 :LDKVLRNYM 1tu9A 21 :FDDFYRHFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9656 # 1p4cA.61.321 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 61 :LDKVLRNYM 1p4cA 322 :VDEVLTLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9657 # 1y6xA.61.40 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 61 :LDKVLRNYM 1y6xA 41 :LGKKLLEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9658 # 1qoyA.61.221 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 61 :LDKVLRNYM 1qoyA 207 :LIPELKNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9659 # 1zk8A.61.111 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 61 :LDKVLRNYM 1zk8A 112 :VRKAGDGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9660 # 1bgf.61.101 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 61 :LDKVLRNYM 1bgf 101 :VAVVISNCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9661 # 1txjA.61.86 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 61 :LDKVLRNYM 1txjA 87 :YSVYIKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9662 # 1fjgT.61.76 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 61 :LDKVLRNYM 1fjgT 77 :AARRKSRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9663 # 1tzvA.61.60 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 61 :LDKVLRNYM 1tzvA 61 :IDDLISRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9664 # 1h6pA.61.131 read from T0287.t2k.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 61 :LDKVLRNY 1h6pA 174 :ASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9665 # 1psrA.61.30 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 61 :LDKVLRNYM 1psrA 31 :LLTMMKENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9666 # 1wa5C.61.395 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 61 :LDKVLRNYM 1wa5C 396 :VTNIFLAHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9667 # 1xp8A.61.181 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 61 :LDKVLRNYM 1xp8A 179 :QARLMSQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9668 # 1ho8A.61.261 read from T0287.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)Y68 (1ho8A)Y267 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1ho8A 260 :ANELVQK T0287 69 :M 1ho8A 268 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=9670 # 1ikpA.61.307 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 61 :LDKVLRNYM 1ikpA 308 :VDQVIRNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9671 # 1a6m.61.130 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 61 :LDKVLRNYM 1a6m 131 :MNKALELFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9672 # 1or7A.61.48 read from T0287.t2k.many.frag # found chain 1or7A in template set T0287 61 :LDKVLRNYM 1or7A 46 :VPDVVQEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9673 # 1sz9A.61.66 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 61 :LDKVLRNYM 1sz9A 67 :LDSICKNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9674 # 2aqlA.61.63 read from T0287.t2k.many.frag # found chain 2aqlA in template set T0287 61 :LDKVLRNYM 2aqlA 214 :VNEVVAGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9675 # 1cfr.61.34 read from T0287.t2k.many.frag # found chain 1cfr in template set T0287 61 :LDKVLRNYM 1cfr 35 :FSKVLSGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9676 # 1zx4A.61.85 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 61 :LDKVLRNYM 1zx4A 227 :FDQLIQNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9677 # 2bnlA.61.83 read from T0287.t2k.many.frag # found chain 2bnlA in template set T0287 61 :LDKVLRNYM 2bnlA 84 :LATALAEFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9678 # 1jk0B.61.242 read from T0287.t2k.many.frag # found chain 1jk0B in template set T0287 61 :LDKVLRNYM 1jk0B 243 :IEKIITEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9679 # 1q2lA.61.845 read from T0287.t2k.many.frag # found chain 1q2lA in template set T0287 61 :LDKVLRNYM 1q2lA 869 :LGEEASKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9680 # 2au5A.61.84 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 61 :LDKVLRNYM 2au5A 82 :LKGELARLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9681 # 1xpjA.61.57 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 61 :LDKVLRNYM 1xpjA 58 :VGKINIHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9682 # 1hs6A.61.424 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 61 :LDKVLRNYM 1hs6A 424 :WKDFLYSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9683 # 1zc6A.62.228 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 62 :DKVLRNYMK 1zc6A 229 :DALLRQAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9684 # 2f5xA.62.289 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 62 :DKVLRNYMK 2f5xA 278 :QAKVKQQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9685 # 1bgf.62.102 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 62 :DKVLRNYMK 1bgf 102 :AVVISNCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9686 # 1qoyA.62.222 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 62 :DKVLRNYMK 1qoyA 208 :IPELKNKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9687 # 1txjA.62.87 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 62 :DKVLRNYMK 1txjA 88 :SVYIKNYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9688 # 1mw9X.62.560 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 62 :DKVLRNYMK 1mw9X 561 :KAVLDHFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9689 # 1wa5C.62.396 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 62 :DKVLRNYMK 1wa5C 397 :TNIFLAHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9690 # 1tu9A.62.23 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 62 :DKVLRNYMK 1tu9A 22 :DDFYRHFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9691 # 1tzvA.62.61 read from T0287.t2k.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)Y68 (1tzvA)Y68 because G (3-10) conformation "forbidden" or filtered. T0287 62 :DKVLRN 1tzvA 62 :DDLISR T0287 69 :MK 1tzvA 69 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9693 # 1psrA.62.31 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)Y68 (1psrA)N38 because G (3-10) conformation "forbidden" or filtered. T0287 62 :DKVLRN 1psrA 32 :LTMMKE T0287 69 :MK 1psrA 39 :FP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9695 # 1y6xA.62.41 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 62 :DKVLRNYMK 1y6xA 42 :GKKLLEEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9696 # 1fjgT.62.77 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 62 :DKVLRNYMK 1fjgT 78 :ARRKSRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9697 # 1xp8A.62.182 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 62 :DKVLRNYMK 1xp8A 180 :ARLMSQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9698 # 1hs6A.62.425 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)M69 (1hs6A)F432 because G (3-10) conformation "forbidden" or filtered. T0287 62 :DKVLRNY 1hs6A 425 :KDFLYSY T0287 70 :K 1hs6A 433 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=9700 # 1zk8A.62.112 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 62 :DKVLRNYMK 1zk8A 113 :RKAGDGIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9701 # 1h6pA.62.132 read from T0287.t2k.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 62 :DKVLRNY 1h6pA 175 :SKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9702 # 1sz9A.62.67 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. T0287 62 :DKVLRNY 1sz9A 68 :DSICKNV T0287 70 :K 1sz9A 76 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=9704 # 1p4cA.62.322 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 62 :DKVLRNYMK 1p4cA 323 :DEVLTLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9705 # 1ho8A.62.262 read from T0287.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N67 (1ho8A)K266 because G (3-10) conformation "forbidden" or filtered. T0287 62 :DKVLR 1ho8A 261 :NELVQ T0287 68 :YMK 1ho8A 267 :YLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9707 # 2au5A.62.85 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 62 :DKVLRNYMK 2au5A 83 :KGELARLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9708 # 1j5wA.62.221 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 62 :DKVLRNYMK 1j5wA 210 :FRHFDEYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9709 # 1ytaA.62.111 read from T0287.t2k.many.frag # found chain 1ytaA in template set T0287 62 :DKVLRNYMK 1ytaA 112 :RRFLFKYMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9710 # 2mhr.62.47 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 62 :DKVLRNYMK 2mhr 48 :VKVTTNHFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9711 # 1hw1A.62.185 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 62 :DKVLRNYMK 1hw1A 186 :RSLALGFYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9712 # 1a6m.62.131 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 62 :DKVLRNYMK 1a6m 132 :NKALELFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9713 # 1po5A.62.123 read from T0287.t2k.many.frag # found chain 1po5A in training set T0287 62 :DKVLRNYMK 1po5A 143 :EERIQEEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9714 # 1i60A.62.117 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 62 :DKVLRNYMK 1i60A 118 :KKSSVDVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9715 # 1ikpA.62.308 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 62 :DKVLRNYMK 1ikpA 309 :DQVIRNALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9716 # 1h7cA.62.67 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 62 :DKVLRNYMK 1h7cA 68 :QRRLEAAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9717 # 2bnlA.62.84 read from T0287.t2k.many.frag # found chain 2bnlA in template set T0287 62 :DKVLRNYMK 2bnlA 85 :ATALAEFWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9718 # 1zc6A.63.229 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 63 :KVLRNYMKD 1zc6A 230 :ALLRQAGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=9719 # 1bgf.63.103 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 63 :KVLRNYMKD 1bgf 103 :VVISNCLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9720 # 2f5xA.63.290 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 63 :KVLRNYMKD 2f5xA 279 :AKVKQQVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9721 # 1txjA.63.88 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 63 :KVLRNYMKD 1txjA 89 :VYIKNYMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9722 # 1qoyA.63.223 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 63 :KVLRNYMKD 1qoyA 209 :PELKNKLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9723 # 1fjgT.63.78 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 63 :KVLRNYMKD 1fjgT 79 :RRKSRLMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9724 # 1mw9X.63.561 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 63 :KVLRNYMKD 1mw9X 562 :AVLDHFFSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9725 # 1wa5C.63.397 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 63 :KVLRNYMKD 1wa5C 398 :NIFLAHMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9726 # 1tu9A.63.24 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 63 :KVLRNYMKD 1tu9A 23 :DFYRHFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9727 # 1hs6A.63.426 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)M69 (1hs6A)F432 because G (3-10) conformation "forbidden" or filtered. T0287 63 :KVLRNY 1hs6A 426 :DFLYSY T0287 70 :KD 1hs6A 433 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9729 # 1zk8A.63.113 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 63 :KVLRNYMKD 1zk8A 114 :KAGDGIVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9730 # 1y6xA.63.42 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 63 :KVLRNYMKD 1y6xA 43 :KKLLEEAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9731 # 1psrA.63.32 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 63 :KVLRNYMKD 1psrA 33 :TMMKENFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9732 # 1xp8A.63.183 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 63 :KVLRNYMKD 1xp8A 181 :RLMSQALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9733 # 1sz9A.63.68 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 63 :KVLRNY 1sz9A 69 :SICKNV T0287 70 :K 1sz9A 76 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=9735 # 1j5wA.63.222 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 63 :KVLRNYMKD 1j5wA 211 :RHFDEYEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9736 # 1ytaA.63.112 read from T0287.t2k.many.frag # found chain 1ytaA in template set T0287 63 :KVLRNYMKD 1ytaA 113 :RFLFKYMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9737 # 2au5A.63.86 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 63 :KVLRNYMKD 2au5A 84 :GELARLIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9738 # 1p4cA.63.323 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 63 :KVLRNYMKD 1p4cA 324 :EVLTLLKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9739 # 2mhr.63.48 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 63 :KVLRNYMKD 2mhr 49 :KVTTNHFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9740 # 1muwA.63.64 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 63 :KVLRNYMKD 1muwA 65 :TERESHIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9741 # 1eyqA.63.104 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 63 :KVLRNYMKD 1eyqA 105 :EYSRKVMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9742 # 1mxrA.63.123 read from T0287.t2k.many.frag # found chain 1mxrA in training set T0287 63 :KVLRNYMKD 1mxrA 124 :HIIRNIVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=9743 # 1hw1A.63.186 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 63 :KVLRNYMKD 1hw1A 187 :SLALGFYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9744 # 1tzvA.63.62 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 63 :KVLRNYMKD 1tzvA 63 :DLISRYLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9745 # 1a6m.63.132 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 63 :KVLRNYMKD 1a6m 133 :KALELFRKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9746 # 1i60A.63.118 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 63 :KVLRNYMKD 1i60A 119 :KSSVDVLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9747 # 1h7cA.63.68 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 63 :KVLRNYMKD 1h7cA 69 :RRLEAAYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9748 # 1yacA.63.184 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 63 :KVLRNYMKD 1yacA 185 :TLFSNHIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9749 # 1z8uA.63.38 read from T0287.t2k.many.frag # found chain 1z8uA in template set T0287 63 :KVLRNYMKD 1z8uA 39 :TVVEDWMNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9750 # 1bgf.64.104 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 64 :VLRNYMKDY 1bgf 104 :VISNCLREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9751 # 1wa5C.64.398 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 64 :VLRNYMKDY 1wa5C 399 :IFLAHMKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9752 # 1txjA.64.89 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 64 :VLRNYMKDY 1txjA 90 :YIKNYMQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9753 # 2f5xA.64.291 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 64 :VLRNYMKDY 2f5xA 280 :KVKQQVPQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9754 # 1zc6A.64.230 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 64 :VLRNYMKDY 1zc6A 231 :LLRQAGEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9755 # 1qoyA.64.224 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 64 :VLRNYMKDY 1qoyA 210 :ELKNKLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9756 # 1fjgT.64.79 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 64 :VLRNYMKDY 1fjgT 80 :RKSRLMRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9757 # 1mw9X.64.562 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 64 :VLRNYMKDY 1mw9X 563 :VLDHFFSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9758 # 1hs6A.64.427 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 64 :VLRNYMKDY 1hs6A 427 :FLYSYFKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9759 # 1xp8A.64.184 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 64 :VLRNYMKDY 1xp8A 182 :LMSQALRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9760 # 1ytaA.64.113 read from T0287.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0287)Y68 (1ytaA)Y118 because G (3-10) conformation "forbidden" or filtered. T0287 64 :VLRN 1ytaA 114 :FLFK T0287 69 :MKDY 1ytaA 119 :MPEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9762 # 1psrA.64.33 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)M69 (1psrA)F39 because G (3-10) conformation "forbidden" or filtered. T0287 64 :VLRNY 1psrA 34 :MMKEN T0287 70 :KDY 1psrA 40 :PNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=9764 # 1i60A.64.119 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 64 :VLRNYMKDY 1i60A 120 :SSVDVLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9765 # 1tu9A.64.25 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 64 :VLRNYMKDY 1tu9A 24 :FYRHFLASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9766 # 1muwA.64.65 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 64 :VLRNYMKDY 1muwA 66 :ERESHIKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9767 # 1j5wA.64.223 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 64 :VLRNYMKDY 1j5wA 212 :HFDEYEKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9768 # 1y6xA.64.43 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 64 :VLRNYMKDY 1y6xA 44 :KLLEEAGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9769 # 1hw1A.64.187 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 64 :VLRNYMKDY 1hw1A 188 :LALGFYHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9770 # 2mhr.64.49 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 64 :VLRNYMKDY 2mhr 50 :VTTNHFTHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9771 # 1eyqA.64.105 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 64 :VLRNYMKDY 1eyqA 106 :YSRKVMENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9772 # 1zk8A.64.114 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 64 :VLRNYMKDY 1zk8A 115 :AGDGIVKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9773 # 1mxrA.64.124 read from T0287.t2k.many.frag # found chain 1mxrA in training set Warning: unaligning (T0287)Y68 (1mxrA)I129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D71 (1mxrA)D132 because D (zeta) conformation "forbidden" or filtered. T0287 64 :VLRN 1mxrA 125 :IIRN T0287 69 :MK 1mxrA 130 :VN T0287 72 :Y 1mxrA 133 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=9776 # 1h7cA.64.69 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 64 :VLRNYMKDY 1h7cA 70 :RLEAAYLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9777 # 2au5A.64.87 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 64 :VLRNYMKDY 2au5A 85 :ELARLIRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9778 # 1b5l.64.118 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 64 :VLRNYMKDY 1b5l 119 :TVKKYFQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9779 # 1yacA.64.185 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 64 :VLRNYMKDY 1yacA 186 :LFSNHIPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9780 # 1l9lA.64.43 read from T0287.t2k.many.frag # found chain 1l9lA in training set Warning: unaligning (T0287)D71 because of BadResidue code BAD_PEPTIDE in next template residue (1l9lA)Y52 Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE at template residue (1l9lA)Y52 T0287 64 :VLRNYMK 1l9lA 44 :VCRNFMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=9781 # 1p4cA.64.324 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 64 :VLRNYMKDY 1p4cA 325 :VLTLLKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9782 # 1z8uA.64.39 read from T0287.t2k.many.frag # found chain 1z8uA in template set T0287 64 :VLRNYMKDY 1z8uA 40 :VVEDWMNFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9783 # 1sz9A.64.69 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K70 (1sz9A)S76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 64 :VLRNY 1sz9A 70 :ICKNV T0287 72 :Y 1sz9A 78 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=9785 # 1wa5C.65.399 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 65 :LRNYMKDYR 1wa5C 400 :FLAHMKGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9786 # 1bgf.65.105 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 65 :LRNYMKDYR 1bgf 105 :ISNCLREER Number of specific fragments extracted= 1 number of extra gaps= 0 total=9787 # 1zc6A.65.231 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 65 :LRNYMKDYR 1zc6A 232 :LRQAGEDAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9788 # 2f5xA.65.292 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 65 :LRNYMKDYR 2f5xA 281 :VKQQVPQWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9789 # 1txjA.65.90 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 65 :LRNYMKDYR 1txjA 91 :IKNYMQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9790 # 1fjgT.65.80 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 65 :LRNYMKDYR 1fjgT 81 :KSRLMRKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9791 # 1xp8A.65.185 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 65 :LRNYMKDYR 1xp8A 183 :MSQALRKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9792 # 1muwA.65.66 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 65 :LRNYMKDYR 1muwA 67 :RESHIKRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9793 # 1mw9X.65.563 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 65 :LRNYMKDYR 1mw9X 564 :LDHFFSDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9794 # 1qoyA.65.225 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 65 :LRNYMKDYR 1qoyA 211 :LKNKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9795 # 1j5wA.65.224 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 65 :LRNYMKDYR 1j5wA 213 :FDEYEKEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9796 # 1hs6A.65.428 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 65 :LRNYMKDYR 1hs6A 428 :LYSYFKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9797 # 1eyqA.65.106 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 65 :LRNYMKDYR 1eyqA 107 :SRKVMENCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9798 # 2mhr.65.50 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 65 :LRNYMKDYR 2mhr 51 :TTNHFTHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9799 # 1ytaA.65.114 read from T0287.t2k.many.frag # found chain 1ytaA in template set T0287 65 :LRNYMKDYR 1ytaA 115 :LFKYMPELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9800 # 1psrA.65.34 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)M69 (1psrA)F39 because G (3-10) conformation "forbidden" or filtered. T0287 65 :LRNY 1psrA 35 :MKEN T0287 70 :KDYR 1psrA 40 :PNFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9802 # 1p4cA.65.325 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 65 :LRNYMKDYR 1p4cA 326 :LTLLKADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9803 # 1zk8A.65.115 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 65 :LRNYMKDYR 1zk8A 116 :GDGIVKLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9804 # 1b5l.65.119 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 65 :LRNYMKDYR 1b5l 120 :VKKYFQGIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9805 # 1tu9A.65.26 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 65 :LRNYMKDYR 1tu9A 25 :YRHFLASSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9806 # 1i60A.65.120 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 65 :LRNYMKDYR 1i60A 121 :SVDVLTELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9807 # 1h7cA.65.70 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 65 :LRNYMKDYR 1h7cA 71 :LEAAYLDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9808 # 1a6m.65.134 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 65 :LRNYMKDYR 1a6m 135 :LELFRKDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9809 # 1hw1A.65.188 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 65 :LRNYMKDYR 1hw1A 189 :ALGFYHKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9810 # 1uw4B.65.78 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 65 :LRNYMKDYR 1uw4B 846 :VDGVLEDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9811 # 1y6xA.65.44 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 65 :LRNYMKDYR 1y6xA 45 :LLEEAGEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9812 # 1dlwA.65.77 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 65 :LRNYMKDYR 1dlwA 78 :FTTVIGHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9813 # 1fjgI.65.84 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 65 :LRNYMKDYR 1fjgI 85 :LVQYNPDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9814 # 1ail.65.35 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 65 :LRNYMKDYR 1ail 36 :LRRDQKSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9815 # 2au5A.65.88 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 65 :LRNYMKDYR 2au5A 86 :LARLIRLYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9816 # 1wa5C.66.400 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 66 :RNYMKDYRA 1wa5C 401 :LAHMKGFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9817 # 2f5xA.66.293 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 66 :RNYMKDYRA 2f5xA 282 :KQQVPQWAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9818 # 1bgf.66.106 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 66 :RNYMKDYRA 1bgf 106 :SNCLREERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9819 # 1qoyA.66.226 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 66 :RNYMKDYRA 1qoyA 212 :KNKLKSVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9820 # 1txjA.66.91 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 66 :RNYMKDYRA 1txjA 92 :KNYMQKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9821 # 1fjgT.66.81 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 66 :RNYMKDYRA 1fjgT 82 :SRLMRKVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9822 # 1muwA.66.67 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 66 :RNYMKDYRA 1muwA 68 :ESHIKRFRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9823 # 1zc6A.66.232 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 66 :RNYMKDYRA 1zc6A 233 :RQAGEDAWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9824 # 1xp8A.66.186 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 66 :RNYMKDYRA 1xp8A 184 :SQALRKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9825 # 1psrA.66.35 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)Y68 (1psrA)N38 because G (3-10) conformation "forbidden" or filtered. T0287 66 :RN 1psrA 36 :KE T0287 69 :MKDYRA 1psrA 39 :FPNFLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9827 # 2mhr.66.51 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 66 :RNYMKDYRA 2mhr 52 :TNHFTHEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9828 # 1i60A.66.121 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 66 :RNYMKDYRA 1i60A 122 :VDVLTELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9829 # 1eyqA.66.107 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 66 :RNYMKDYRA 1eyqA 108 :RKVMENCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9830 # 1hs6A.66.429 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 66 :RNYMKDYRA 1hs6A 429 :YSYFKDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9831 # 1h7cA.66.71 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 66 :RNYMKDYRA 1h7cA 72 :EAAYLDLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9832 # 1a6m.66.135 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 66 :RNYMKDYRA 1a6m 136 :ELFRKDIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9833 # 1mw9X.66.564 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 66 :RNYMKDYRA 1mw9X 565 :DHFFSDFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9834 # 1hw1A.66.189 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 66 :RNYMKDYRA 1hw1A 190 :LGFYHKLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9835 # 1b5l.66.120 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 66 :RNYMKDYRA 1b5l 121 :KKYFQGIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9836 # 1ytaA.66.115 read from T0287.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0287)Y68 (1ytaA)Y118 because G (3-10) conformation "forbidden" or filtered. T0287 66 :RN 1ytaA 116 :FK T0287 69 :MKDYRA 1ytaA 119 :MPELEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9838 # 1iuqA.66.37 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 66 :RNYMKDYRA 1iuqA 39 :EELYQNYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9839 # 1j5wA.66.225 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 66 :RNYMKDYRA 1j5wA 214 :DEYEKEFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9840 # 1fkmA.66.61 read from T0287.t2k.many.frag # found chain 1fkmA in template set T0287 66 :RNYMKDYRA 1fkmA 309 :QRKRKEYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9841 # 1fjgI.66.85 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 66 :RNYMKDYRA 1fjgI 86 :VQYNPDYRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9842 # 1ail.66.36 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 66 :RNYMKDYRA 1ail 37 :RRDQKSLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9843 # 1dlwA.66.78 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 66 :RNYMKDYRA 1dlwA 79 :TTVIGHLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9844 # 1p4cA.66.326 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 66 :RNYMKDYRA 1p4cA 327 :TLLKADIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9845 # 1zk8A.66.116 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 66 :RNYMKDYRA 1zk8A 117 :DGIVKLCLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9846 # 1yacA.66.187 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 66 :RNYMKDYRA 1yacA 188 :SNHIPDYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9847 # 1yviA.66.75 read from T0287.t2k.many.frag # found chain 1yviA in template set T0287 66 :RNYMKDYRA 1yviA 76 :DAYVHQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9848 # 2f5xA.67.294 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 67 :NYMKDYRAV 2f5xA 283 :QQVPQWAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9849 # 1wa5C.67.401 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 67 :NYMKDYRAV 1wa5C 402 :AHMKGFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9850 # 1fjgT.67.82 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 67 :NYMKDYRAV 1fjgT 83 :RLMRKVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9851 # 1muwA.67.68 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 67 :NYMKDYRAV 1muwA 69 :SHIKRFRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9852 # 1bgf.67.107 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 67 :NYMKDYRAV 1bgf 107 :NCLREERRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9853 # 1xp8A.67.187 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 67 :NYMKDYRAV 1xp8A 185 :QALRKLTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9854 # 1fjgI.67.86 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 67 :NYMKDYRAV 1fjgI 87 :QYNPDYRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9855 # 2mhr.67.52 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 67 :NYMKDYRAV 2mhr 53 :NHFTHEEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9856 # 1iuqA.67.38 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 67 :NYMKDYRAV 1iuqA 40 :ELYQNYRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9857 # 1zc6A.67.233 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 67 :NYMKDYRAV 1zc6A 234 :QAGEDAWAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9858 # 1eyqA.67.108 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 67 :NYMKDYRAV 1eyqA 109 :KVMENCVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9859 # 1qoyA.67.227 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 67 :NYMKDYRAV 1qoyA 213 :NKLKSVQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9860 # 1txjA.67.92 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 67 :NYMKDYRAV 1txjA 93 :NYMQKILKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9861 # 1hw1A.67.190 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 67 :NYMKDYRAV 1hw1A 191 :GFYHKLSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9862 # 1dlwA.67.79 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 67 :NYMKDYRAV 1dlwA 80 :TVIGHLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9863 # 1psrA.67.36 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 67 :NYMKDYRAV 1psrA 37 :ENFPNFLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9864 # 1a6m.67.136 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 67 :NYMKDYRAV 1a6m 137 :LFRKDIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9865 # 1h7cA.67.72 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 67 :NYMKDYRAV 1h7cA 73 :AAYLDLQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9866 # 1hs6A.67.430 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)M69 (1hs6A)F432 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y72 (1hs6A)K435 because G (3-10) conformation "forbidden" or filtered. T0287 67 :NY 1hs6A 430 :SY T0287 70 :KD 1hs6A 433 :KD T0287 73 :RAV 1hs6A 436 :VDV Number of specific fragments extracted= 3 number of extra gaps= 2 total=9869 # 1i60A.67.122 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 67 :NYMKDYRAV 1i60A 123 :DVLTELSDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9870 # 1zk8A.67.117 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 67 :NYMKDYRAV 1zk8A 118 :GIVKLCLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9871 # 1b5l.67.121 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 67 :NYMKDYRAV 1b5l 122 :KYFQGIYDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9872 # 1p4cA.67.327 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 67 :NYMKDYRAV 1p4cA 328 :LLKADIDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9873 # 1fkmA.67.62 read from T0287.t2k.many.frag # found chain 1fkmA in template set T0287 67 :NYMKDYRAV 1fkmA 310 :RKRKEYRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9874 # 1mw9X.67.565 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 67 :NYMKDYRAV 1mw9X 566 :HFFSDFTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9875 # 1j5wA.67.226 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 67 :NYMKDYRAV 1j5wA 215 :EYEKEFYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9876 # 1uw4B.67.80 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 67 :NYMKDYRAV 1uw4B 848 :GVLEDIRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9877 # 1m48A.67.60 read from T0287.t2k.many.frag # found chain 1m48A in template set T0287 67 :NYMKDYRAV 1m48A 61 :EELKPLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9878 # 1ail.67.37 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 67 :NYMKDYRAV 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9879 # 1yacA.67.188 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 67 :NYMKDYRAV 1yacA 189 :NHIPDYRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9880 # 2f5xA.68.295 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 68 :YMKDYRAVI 2f5xA 284 :QVPQWAELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9881 # 1fjgI.68.87 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 68 :YMKDYRAVI 1fjgI 88 :YNPDYRAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9882 # 1wa5C.68.402 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 68 :YMKDYRAVI 1wa5C 403 :HMKGFVDQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9883 # 1fjgT.68.83 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 68 :YMKDYRAVI 1fjgT 84 :LMRKVRQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9884 # 1muwA.68.69 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 68 :YMKDYRAVI 1muwA 70 :HIKRFRQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9885 # 1bgf.68.108 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 68 :YMKDYRAVI 1bgf 108 :CLREERRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9886 # 1psrA.68.37 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 68 :YMKDYRAVI 1psrA 38 :NFPNFLSAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9887 # 2mhr.68.53 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 68 :YMKDYRAVI 2mhr 54 :HFTHEEAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9888 # 1dlwA.68.80 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 68 :YMKDYRAVI 1dlwA 81 :VIGHLRSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9889 # 1iuqA.68.39 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 68 :YMKDYRAVI 1iuqA 41 :LYQNYRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9890 # 1xp8A.68.188 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 68 :YMKDYRAVI 1xp8A 186 :ALRKLTAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9891 # 1eyqA.68.109 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 68 :YMKDYRAVI 1eyqA 110 :VMENCVAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9892 # 1hw1A.68.191 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 68 :YMKDYRAVI 1hw1A 192 :FYHKLSALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9893 # 1zc6A.68.234 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 68 :YMKDYRAVI 1zc6A 235 :AGEDAWAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9894 # 1txjA.68.93 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 68 :YMKDYRAVI 1txjA 94 :YMQKILKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9895 # 1yacA.68.189 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 68 :YMKDYRAVI 1yacA 190 :HIPDYRNLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9896 # 1hs6A.68.431 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)Y72 (1hs6A)K435 because G (3-10) conformation "forbidden" or filtered. T0287 68 :YMKD 1hs6A 431 :YFKD T0287 73 :RAVI 1hs6A 436 :VDVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9898 # 1h7cA.68.73 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 68 :YMKDYRAVI 1h7cA 74 :AYLDLQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9899 # 1qoyA.68.228 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 68 :YMKDYRAVI 1qoyA 214 :KLKSVQNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9900 # 1yqyA.68.53 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 68 :YMKDYRAVI 1yqyA 311 :LSQEEKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9901 # 1a6m.68.137 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 68 :YMKDYRAVI 1a6m 138 :FRKDIAAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9902 # 1ail.68.38 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 68 :YMKDYRAVI 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9903 # 1i60A.68.123 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 68 :YMKDYRAVI 1i60A 124 :VLTELSDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9904 # 1p4cA.68.328 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 68 :YMKDYRAVI 1p4cA 329 :LKADIDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9905 # 1a8o.68.43 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 68 :YMKDYRAVI 1a8o 194 :ANPDCKTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9906 # 1zk8A.68.118 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 68 :YMKDYRAVI 1zk8A 119 :IVKLCLQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9907 # 1b5l.68.122 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 68 :YMKDYRAVI 1b5l 123 :YFQGIYDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9908 # 1cxqA.68.115 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 68 :YMKDYRAVI 1cxqA 163 :LKDKIRVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9909 # 2f6hX.68.76 read from T0287.t2k.many.frag # found chain 2f6hX in template set T0287 68 :YMKDYRAVI 2f6hX 98 :VLTTIQKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9910 # 1uw4B.68.81 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 68 :YMKDYRAVI 1uw4B 849 :VLEDIRLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9911 # 2f5xA.69.296 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 69 :MKDYRAVIK 2f5xA 285 :VPQWAELFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9912 # 1fjgI.69.88 read from T0287.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 69 :MKDYRA 1fjgI 89 :NPDYRA T0287 76 :IK 1fjgI 96 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9914 # 2mhr.69.54 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 69 :MKDYRAVIK 2mhr 55 :FTHEEAMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9915 # 1fjgT.69.84 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 69 :MKDYRAVIK 1fjgT 85 :MRKVRQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9916 # 1iuqA.69.40 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 69 :MKDYRAVIK 1iuqA 42 :YQNYRNAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9917 # 1hw1A.69.192 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 69 :MKDYRAVIK 1hw1A 193 :YHKLSALCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9918 # 1dlwA.69.81 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 69 :MKDYRAVIK 1dlwA 82 :IGHLRSALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9919 # 1xp8A.69.189 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 69 :MKDYRAVIK 1xp8A 187 :LRKLTAILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9920 # 1muwA.69.70 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 69 :MKDYRAVIK 1muwA 71 :IKRFRQALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9921 # 1eyqA.69.110 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 69 :MKDYRAVIK 1eyqA 111 :MENCVAHLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9922 # 1psrA.69.38 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 69 :MKDYRAVIK 1psrA 39 :FPNFLSACD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9923 # 1bgf.69.109 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 69 :MKDYRAVIK 1bgf 109 :LREERRILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9924 # 1yqyA.69.54 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 69 :MKDYRAVIK 1yqyA 312 :SQEEKELLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9925 # 1wa5C.69.403 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 69 :MKDYRAVIK 1wa5C 404 :MKGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9926 # 1bxyA.69.15 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 69 :MKDYRAVIK 1bxyA 16 :PKDQKAALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9927 # 1eexA.69.415 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 69 :MKDYRAVIK 1eexA 416 :ARALQAVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9928 # 1i60A.69.124 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 69 :MKDYRAVIK 1i60A 125 :LTELSDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9929 # 2f6hX.69.77 read from T0287.t2k.many.frag # found chain 2f6hX in template set T0287 69 :MKDYRAVIK 2f6hX 99 :LTTIQKVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9930 # 1cxqA.69.116 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 69 :MKDYRAVIK 1cxqA 164 :KDKIRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9931 # 1zk8A.69.119 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 69 :MKDYRAVIK 1zk8A 120 :VKLCLQVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9932 # 1ajsA.69.333 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 69 :MKDYRAVIK 1ajsA 334 :RSELRARLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9933 # 1t0fA.69.197 read from T0287.t2k.many.frag # found chain 1t0fA in template set T0287 69 :MKDYRAVIK 1t0fA 195 :LSPLAHILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9934 # 1a8o.69.44 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 69 :MKDYRAVIK 1a8o 195 :NPDCKTILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9935 # 1zc6A.69.235 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 69 :MKDYRAVIK 1zc6A 236 :GEDAWAIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9936 # 1yacA.69.190 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 69 :MKDYRAVIK 1yacA 191 :IPDYRNLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9937 # 1txjA.69.94 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 69 :MKDYRAVIK 1txjA 95 :MQKILKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9938 # 1b5l.69.123 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 69 :MKDYRAVIK 1b5l 124 :FQGIYDYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9939 # 1p4cA.69.329 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 69 :MKDYRAVIK 1p4cA 330 :KADIDRTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9940 # 8abp.69.117 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 69 :MKDYRAVIK 8abp 118 :GQELYKEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9941 # 2f22A.69.119 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 69 :MKDYRAVIK 2f22A 119 :QGQYYVALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9942 # 2f5xA.70.297 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 70 :KDYRAVIKS 2f5xA 286 :PQWAELFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9943 # 2mhr.70.55 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 70 :KDYRAVIKS 2mhr 56 :THEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9944 # 1fjgT.70.85 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 70 :KDYRAVIKS 1fjgT 86 :RKVRQLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9945 # 1dlwA.70.82 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 70 :KDYRAVIKS 1dlwA 83 :GHLRSALTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9946 # 1eyqA.70.111 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 70 :KDYRAVIKS 1eyqA 112 :ENCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9947 # 1hw1A.70.193 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 70 :KDYRAVIKS 1hw1A 194 :HKLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9948 # 1eexA.70.416 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 70 :KDYRAVIKS 1eexA 417 :RALQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9949 # 1iuqA.70.41 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 70 :KDYRAVIKS 1iuqA 43 :QNYRNAVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9950 # 1xp8A.70.190 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 70 :KDYRAVIKS 1xp8A 188 :RKLTAILSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9951 # 1yqyA.70.55 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 70 :KDYRAVIKS 1yqyA 313 :QEEKELLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9952 # 1fjgI.70.89 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 70 :KDYRAVIKS 1fjgI 90 :PDYRAKLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9953 # 2f6hX.70.78 read from T0287.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)S78 (2f6hX)Q108 because G (3-10) conformation "forbidden" or filtered. T0287 70 :KDYRAVIK 2f6hX 100 :TTIQKVVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=9954 # 1bgf.70.110 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 70 :KDYRAVIKS 1bgf 110 :REERRILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9955 # 1psrA.70.39 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 70 :KDYRAVIKS 1psrA 40 :PNFLSACDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9956 # 1bxyA.70.16 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 70 :KDYRAVIKS 1bxyA 17 :KDQKAALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9957 # 1muwA.70.71 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 70 :KDYRAVIKS 1muwA 72 :KRFRQALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9958 # 1cxqA.70.117 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 70 :KDYRAVIKS 1cxqA 165 :DKIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9959 # 1a8o.70.45 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 70 :KDYRAVIKS 1a8o 196 :PDCKTILKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9960 # 1y0zA.70.74 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 70 :KDYRAVIKS 1y0zA 75 :DDFNDVVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9961 # 1t0fA.70.198 read from T0287.t2k.many.frag # found chain 1t0fA in template set T0287 70 :KDYRAVIKS 1t0fA 196 :SPLAHILQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9962 # 1p4cA.70.330 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 70 :KDYRAVIKS 1p4cA 331 :ADIDRTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9963 # 2f22A.70.120 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 70 :KDYRAVIKS 2f22A 120 :GQYYVALKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9964 # 1zk8A.70.120 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 70 :KDYRAVIKS 1zk8A 121 :KLCLQVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9965 # 1i60A.70.125 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 70 :KDYRAVIKS 1i60A 126 :TELSDIAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9966 # 1wa5C.70.404 read from T0287.t2k.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wa5C)N418 T0287 70 :KDYRAVIK 1wa5C 405 :KGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9967 # 1b5l.70.124 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 70 :KDYRAVIKS 1b5l 125 :QGIYDYLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9968 # 1pa7A.70.75 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 70 :KDYRAVIKS 1pa7A 76 :KILQAGFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9969 # 1mn8A.70.17 read from T0287.t2k.many.frag # found chain 1mn8A in training set T0287 70 :KDYRAVIKS 1mn8A 17 :KDVERIAHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9970 # 8abp.70.118 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 70 :KDYRAVIKS 8abp 119 :QELYKEMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9971 # 1y2qA.70.61 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 70 :KDYRAVIKS 1y2qA 62 :EEISKVAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9972 # 2f5xA.71.298 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 71 :DYRAVIKSI 2f5xA 287 :QWAELFKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9973 # 1fjgT.71.86 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 71 :DYRAVIKSI 1fjgT 87 :KVRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9974 # 2mhr.71.56 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 T0287 71 :DYRAVIKS 2mhr 57 :HEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=9975 # 1yqyA.71.56 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 71 :DYRAVIKSI 1yqyA 314 :EEKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9976 # 1eyqA.71.112 read from T0287.t2k.many.frag # found chain 1eyqA in template set Warning: unaligning (T0287)I79 (1eyqA)V121 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1eyqA 113 :NCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=9977 # 1hw1A.71.194 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1hw1A 195 :KLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9978 # 1iuqA.71.42 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 71 :DYRAVIKSI 1iuqA 44 :NYRNAVIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=9979 # 1xp8A.71.191 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 71 :DYRAVIKSI 1xp8A 189 :KLTAILSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9980 # 1dlwA.71.83 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 71 :DYRAVIKSI 1dlwA 84 :HLRSALTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9981 # 1bxyA.71.17 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 71 :DYRAVIKSI 1bxyA 18 :DQKAALKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9982 # 2f6hX.71.79 read from T0287.t2k.many.frag # found chain 2f6hX in template set T0287 71 :DYRAVIKSI 2f6hX 101 :TIQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9983 # 1eexA.71.417 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 71 :DYRAVIKSI 1eexA 418 :ALQAVFAGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9984 # 1a8o.71.46 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 71 :DYRAVIKSI 1a8o 197 :DCKTILKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9985 # 1psrA.71.40 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 71 :DYRAVIKSI 1psrA 41 :NFLSACDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9986 # 1t0fA.71.199 read from T0287.t2k.many.frag # found chain 1t0fA in template set T0287 71 :DYRAVIKSI 1t0fA 197 :PLAHILQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9987 # 1y0zA.71.75 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 71 :DYRAVIKSI 1y0zA 76 :DFNDVVEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9988 # 2f22A.71.121 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 71 :DYRAVIKSI 2f22A 121 :QYYVALKQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9989 # 1y2qA.71.62 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 71 :DYRAVIKSI 1y2qA 63 :EISKVAEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9990 # 1p4cA.71.331 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 71 :DYRAVIKSI 1p4cA 332 :DIDRTLAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9991 # 1i60A.71.126 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 71 :DYRAVIKSI 1i60A 127 :ELSDIAEPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9992 # 1fjgI.71.90 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 71 :DYRAVIKSI 1fjgI 91 :DYRAKLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9993 # 1ajsA.71.335 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 71 :DYRAVIKSI 1ajsA 336 :ELRARLEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9994 # 1bgf.71.111 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 71 :DYRAVIKSI 1bgf 111 :EERRILAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9995 # 1pa7A.71.76 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 71 :DYRAVIKSI 1pa7A 77 :ILQAGFKRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9996 # 1muwA.71.72 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 71 :DYRAVIKSI 1muwA 73 :RFRQALDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9997 # 1cxqA.71.118 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 71 :DYRAVIKSI 1cxqA 166 :KIRVLAEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9998 # 1rcwA.71.183 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)I79 (1rcwA)L192 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1rcwA 184 :EEKALIEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=9999 # 1mn8A.71.18 read from T0287.t2k.many.frag # found chain 1mn8A in training set T0287 71 :DYRAVIKSI 1mn8A 18 :DVERIAHNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10000 # 8abp.71.119 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 71 :DYRAVIKSI 8abp 120 :ELYKEMQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10001 # 2ajtA.71.212 read from T0287.t2k.many.frag # found chain 2ajtA in template set T0287 71 :DYRAVIKSI 2ajtA 213 :DLVQVVNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10002 # 2f5xA.72.299 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 72 :YRAVIKSIG 2f5xA 288 :WAELFKKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10003 # 1fjgT.72.87 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 72 :YRAVIKSIG 1fjgT 88 :VRQLLEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10004 # 1yqyA.72.57 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 72 :YRAVIKSIG 1yqyA 315 :EKELLKRIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10005 # 2mhr.72.57 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 72 :YRAVIKS 2mhr 58 :EEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10006 # 1eyqA.72.113 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 72 :YRAVIKSIG 1eyqA 114 :CVAHLKSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10007 # 1bxyA.72.18 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 72 :YRAVIKSIG 1bxyA 19 :QKAALKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10008 # 1eexA.72.418 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 72 :YRAVIKSIG 1eexA 419 :LQAVFAGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10009 # 1y0zA.72.76 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 72 :YRAVIKSIG 1y0zA 77 :FNDVVEAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10010 # 1y2qA.72.63 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 72 :YRAVIKSIG 1y2qA 64 :ISKVAEQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10011 # 1xp8A.72.192 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 72 :YRAVIKSIG 1xp8A 190 :LTAILSKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10012 # 1hw1A.72.195 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1hw1A 196 :LSALCSE T0287 80 :G 1hw1A 204 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=10014 # 1iuqA.72.43 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 72 :YRAVIKSIG 1iuqA 45 :YRNAVIESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10015 # 1dlwA.72.84 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 72 :YRAVIKSIG 1dlwA 85 :LRSALTGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10016 # 1t0fA.72.200 read from T0287.t2k.many.frag # found chain 1t0fA in template set T0287 72 :YRAVIKSIG 1t0fA 198 :LAHILQEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10017 # 2f22A.72.122 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 72 :YRAVIKSIG 2f22A 122 :YYVALKQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10018 # 2f6hX.72.80 read from T0287.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 2f6hX 102 :IQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10019 # 1a8o.72.47 read from T0287.t2k.many.frag # found chain 1a8o in training set Warning: unaligning (T0287)S78 (1a8o)A204 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIK 1a8o 198 :CKTILK T0287 79 :IG 1a8o 205 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=10021 # 1psrA.72.41 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 72 :YRAVIKSIG 1psrA 42 :FLSACDKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10022 # 1cxqA.72.119 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 72 :YRAVIKSIG 1cxqA 167 :IRVLAEGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10023 # 1pa7A.72.77 read from T0287.t2k.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)I79 (1pa7A)M85 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1pa7A 78 :LQAGFKR T0287 80 :G 1pa7A 86 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=10025 # 1k3yA.72.134 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 T0287 72 :YRAVIKSI 1k3yA 136 :FEKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=10026 # 1p4cA.72.332 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 72 :YRAVIKSIG 1p4cA 333 :IDRTLAQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10027 # 1ve4A.72.18 read from T0287.t2k.many.frag # found chain 1ve4A in template set T0287 72 :YRAVIKSIG 1ve4A 19 :AYEVLKRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10028 # 2bu3A.72.138 read from T0287.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0287)I79 (2bu3A)Y135 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 2bu3A 128 :LGRLIAS T0287 80 :G 2bu3A 136 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=10030 # 1rcwA.72.184 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)G80 (1rcwA)L193 because P (beta_P) conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 1rcwA 185 :EKALIEML Number of specific fragments extracted= 1 number of extra gaps= 1 total=10031 # 1s1dA.72.195 read from T0287.t2k.many.frag # found chain 1s1dA in training set T0287 72 :YRAVIKSIG 1s1dA 196 :YNALRAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10032 # 2ajtA.72.213 read from T0287.t2k.many.frag # found chain 2ajtA in template set Warning: unaligning (T0287)G80 (2ajtA)S222 because P (beta_P) conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 2ajtA 214 :LVQVVNSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10033 # 1ajsA.72.336 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 72 :YRAVIKSIG 1ajsA 337 :LRARLEALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10034 # 1i60A.72.127 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 72 :YRAVIKSIG 1i60A 128 :LSDIAEPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10035 # 1f5mA.72.52 read from T0287.t2k.many.frag # found chain 1f5mA in template set T0287 72 :YRAVIKSIG 1f5mA 53 :IWHAYKSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10036 # 2f5xA.73.300 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 73 :RAVIKSIGV 2f5xA 289 :AELFKKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10037 # 1yqyA.73.58 read from T0287.t2k.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 73 :RAVIKSI 1yqyA 316 :KELLKRI T0287 81 :V 1yqyA 324 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=10039 # 2mhr.73.58 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 73 :RAVIKS 2mhr 59 :EAMMDA T0287 81 :V 2mhr 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=10041 # 1fjgT.73.88 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 73 :RAVIKSIGV 1fjgT 89 :RQLLEAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10042 # 1bxyA.73.19 read from T0287.t2k.many.frag # found chain 1bxyA in template set Warning: unaligning (T0287)I79 (1bxyA)L26 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1bxyA 20 :KAALKA T0287 80 :GV 1bxyA 27 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10044 # 1iuqA.73.44 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 73 :RAVIKSIGV 1iuqA 46 :RNAVIESGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10045 # 1hw1A.73.196 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1hw1A 197 :SALCSE T0287 80 :GV 1hw1A 204 :AH Number of specific fragments extracted= 2 number of extra gaps= 1 total=10047 # 1eexA.73.419 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 73 :RAVIKSIGV 1eexA 420 :QAVFAGMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10048 # 1psrA.73.42 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 73 :RAVIKSIGV 1psrA 43 :LSACDKKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10049 # 1t0fA.73.201 read from T0287.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)I79 (1t0fA)K205 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1t0fA 199 :AHILQE T0287 80 :GV 1t0fA 206 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10051 # 1y0zA.73.77 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 73 :RAVIKSIGV 1y0zA 78 :NDVVEAFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10052 # 1eyqA.73.114 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 73 :RAVIKSIGV 1eyqA 115 :VAHLKSVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10053 # 2f6hX.73.81 read from T0287.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)V81 (2f6hX)G111 because S (epsilon) conformation "forbidden" or filtered. T0287 73 :RAVIKSI 2f6hX 103 :QKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10054 # 1y2qA.73.64 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 73 :RAVIKSIGV 1y2qA 65 :SKVAEQVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10055 # 1dlwA.73.85 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 73 :RAVIKSIGV 1dlwA 86 :RSALTGAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10056 # 1xp8A.73.193 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 73 :RAVIKSIGV 1xp8A 191 :TAILSKTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10057 # 2f22A.73.123 read from T0287.t2k.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 2f22A 123 :YVALKQ T0287 80 :GV 2f22A 130 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10059 # 1pa7A.73.78 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 73 :RAVIKSIGV 1pa7A 79 :QAGFKRMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10060 # 1ve4A.73.19 read from T0287.t2k.many.frag # found chain 1ve4A in template set T0287 73 :RAVIKSIGV 1ve4A 20 :YEVLKRAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10061 # 1f5mA.73.53 read from T0287.t2k.many.frag # found chain 1f5mA in template set T0287 73 :RAVIKSIGV 1f5mA 54 :WHAYKSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10062 # 1a8o.73.48 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 73 :RAVIKSIGV 1a8o 199 :KTILKALGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10063 # 1cxqA.73.120 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 73 :RAVIKSIGV 1cxqA 168 :RVLAEGDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10064 # 1k3yA.73.135 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 73 :RAVIKSI 1k3yA 137 :EKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=10065 # 1v4vA.73.83 read from T0287.t2k.many.frag # found chain 1v4vA in training set Warning: unaligning (T0287)I79 (1v4vA)M90 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1v4vA 84 :ARALKE T0287 80 :GV 1v4vA 91 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10067 # 2bu3A.73.139 read from T0287.t2k.many.frag # found chain 2bu3A in template set T0287 73 :RAVIKSIGV 2bu3A 129 :GRLIASYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10068 # 1p4cA.73.333 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 73 :RAVIKSIGV 1p4cA 334 :DRTLAQIGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10069 # 1smbA.73.17 read from T0287.t2k.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)I79 (1smbA)H24 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1smbA 18 :NEYRQK T0287 80 :GV 1smbA 25 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10071 # 1s1dA.73.196 read from T0287.t2k.many.frag # found chain 1s1dA in training set Warning: unaligning (T0287)I79 (1s1dA)A203 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1s1dA 197 :NALRAA T0287 80 :GV 1s1dA 204 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10073 # 2f8lA.73.70 read from T0287.t2k.many.frag # found chain 2f8lA in template set T0287 73 :RAVIKSIGV 2f8lA 59 :QASYESIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10074 # 1yviA.73.82 read from T0287.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 T0287 73 :RAVIKSIG 1yviA 83 :KGSSASVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=10075 # 1pa7A.74.79 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 74 :AVIKSIGVD 1pa7A 80 :AGFKRMGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10076 # 2f5xA.74.301 read from T0287.t2k.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)D82 (2f5xA)E298 because E (beta_S) conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 2f5xA 290 :ELFKKAGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=10077 # 1iuqA.74.45 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 74 :AVIKSIGVD 1iuqA 47 :NAVIESGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10078 # 2mhr.74.59 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 74 :AVIKS 2mhr 60 :AMMDA T0287 81 :VD 2mhr 67 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10080 # 1smbA.74.18 read from T0287.t2k.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1smbA 19 :EYRQKHGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=10081 # 1bxyA.74.20 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 74 :AVIKSIGVD 1bxyA 21 :AALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10082 # 1y0zA.74.78 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 74 :AVIKSIGVD 1y0zA 79 :DVVEAFGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10083 # 1eexA.74.420 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 74 :AVIKSIGVD 1eexA 421 :AVFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10084 # 1psrA.74.43 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 74 :AVIKSIGVD 1psrA 44 :SACDKKGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10085 # 1f5mA.74.54 read from T0287.t2k.many.frag # found chain 1f5mA in template set T0287 74 :AVIKSIGVD 1f5mA 55 :HAYKSLAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10086 # 1yqyA.74.59 read from T0287.t2k.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 74 :AVIKSI 1yqyA 317 :ELLKRI T0287 81 :VD 1yqyA 324 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=10088 # 1fjgT.74.89 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 74 :AVIKSIGVD 1fjgT 90 :QLLEAAGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10089 # 2f22A.74.124 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 74 :AVIKSIGVD 2f22A 124 :VALKQSGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10090 # 1t0fA.74.202 read from T0287.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)I79 (1t0fA)K205 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1t0fA 200 :HILQE T0287 80 :GVD 1t0fA 206 :GDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10092 # 1z3eB.74.21 read from T0287.t2k.many.frag # found chain 1z3eB in template set T0287 74 :AVIKSIGVD 1z3eB 264 :NCLKRAGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10093 # 1w0hA.74.160 read from T0287.t2k.many.frag # found chain 1w0hA in training set T0287 74 :AVIKSIGVD 1w0hA 279 :IMLEKLGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10094 # 1q0uA.74.16 read from T0287.t2k.many.frag # found chain 1q0uA in template set Warning: unaligning (T0287)I79 (1q0uA)L22 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1q0uA 17 :EAIKT T0287 80 :GVD 1q0uA 23 :RFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10096 # 1eyqA.74.115 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 74 :AVIKSIGVD 1eyqA 116 :AHLKSVGTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10097 # 1ve4A.74.20 read from T0287.t2k.many.frag # found chain 1ve4A in template set T0287 74 :AVIKSIGVD 1ve4A 21 :EVLKRAGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10098 # 1s1dA.74.197 read from T0287.t2k.many.frag # found chain 1s1dA in training set T0287 74 :AVIKSIGVD 1s1dA 198 :ALRAAAGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10099 # 1k3yA.74.136 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 74 :AVIKSI 1k3yA 138 :KVLKSH T0287 82 :D 1k3yA 146 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=10101 # 1y2qA.74.65 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 74 :AVIKSIGVD 1y2qA 66 :KVAEQVKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10102 # 1hw1A.74.197 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKS 1hw1A 198 :ALCSE T0287 81 :VD 1hw1A 205 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10104 # 1tqgA.74.49 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 74 :AVIKSIGVD 1tqgA 49 :GMAGTMGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10105 # 2f8lA.74.71 read from T0287.t2k.many.frag # found chain 2f8lA in template set T0287 74 :AVIKSIGVD 2f8lA 60 :ASYESIELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10106 # 2fokA.74.329 read from T0287.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0287)I79 (2fokA)L335 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 2fokA 330 :DNLKK T0287 80 :GVD 2fokA 336 :GFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10108 # 1p4cA.74.334 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 74 :AVIKSIGVD 1p4cA 335 :RTLAQIGCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10109 # 8abp.74.122 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 74 :AVIKSIGVD 8abp 123 :KEMQKRGWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10110 # 2f6hX.74.82 read from T0287.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)V81 (2f6hX)G111 because S (epsilon) conformation "forbidden" or filtered. T0287 74 :AVIKSI 2f6hX 104 :KVVTQL T0287 82 :D 2f6hX 112 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=10112 # 1a62.74.15 read from T0287.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1a62 16 :TLGENMGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10113 # 1pa7A.75.80 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 75 :VIKSIGVDK 1pa7A 81 :GFKRMGVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10114 # 1smbA.75.19 read from T0287.t2k.many.frag # found chain 1smbA in training set T0287 75 :VIKSIGVDK 1smbA 20 :YRQKHGVPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10115 # 1iuqA.75.46 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 75 :VIKSIGVDK 1iuqA 48 :AVIESGNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10116 # 1psrA.75.44 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 75 :VIKSIGVDK 1psrA 45 :ACDKKGTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10117 # 1y0zA.75.79 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 75 :VIKSIGVDK 1y0zA 80 :VVEAFGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10118 # 1iirA.75.172 read from T0287.t2k.many.frag # found chain 1iirA in training set T0287 75 :VIKSIGVDK 1iirA 173 :HRDAIGLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10119 # 2f5xA.75.302 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 75 :VIKSIGVDK 2f5xA 291 :LFKKAGVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10120 # 1z3eB.75.22 read from T0287.t2k.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1z3eB 265 :CLKR T0287 80 :GVDK 1z3eB 270 :GINT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10122 # 2f22A.75.125 read from T0287.t2k.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)K83 (2f22A)L133 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 2f22A 125 :ALKQSGIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=10123 # 2fokA.75.330 read from T0287.t2k.many.frag # found chain 2fokA in template set T0287 75 :VIKSIGVDK 2fokA 331 :NLKKLGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10124 # 1tqgA.75.50 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 75 :VIKSIGVDK 1tqgA 50 :MAGTMGFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10125 # 1uocA.75.231 read from T0287.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)I79 (1uocA)L236 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1uocA 232 :LADE T0287 80 :GVDK 1uocA 237 :GLPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10127 # 2mhr.75.60 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 75 :VIKS 2mhr 61 :MMDA T0287 81 :VDK 2mhr 67 :YSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10129 # 1c1kA.75.122 read from T0287.t2k.many.frag # found chain 1c1kA in training set T0287 75 :VIKSIGVDK 1c1kA 123 :FSKKVEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10130 # 1kr7A.75.89 read from T0287.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1kr7A 89 :ACSAHGAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=10131 # 1eexA.75.421 read from T0287.t2k.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1eexA)I431 T0287 75 :VIKSIGVD 1eexA 422 :VFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=10132 # 1bxyA.75.21 read from T0287.t2k.many.frag # found chain 1bxyA in template set Warning: unaligning (T0287)K83 (1bxyA)R30 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1bxyA 22 :ALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=10133 # 1wu7A.75.247 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)I79 (1wu7A)Y252 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKS 1wu7A 248 :LLAS T0287 80 :GVD 1wu7A 253 :GVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=10135 # 1q0uA.75.17 read from T0287.t2k.many.frag # found chain 1q0uA in template set T0287 75 :VIKSIGVDK 1q0uA 18 :AIKTLRFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10136 # 2ar0A.75.75 read from T0287.t2k.many.frag # found chain 2ar0A in template set T0287 75 :VIKSIGVDK 2ar0A 76 :MLVHLGEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10137 # 1bc5A.75.41 read from T0287.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1bc5A 57 :RLRA T0287 80 :GVDK 1bc5A 62 :GLDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10139 # 1w0hA.75.161 read from T0287.t2k.many.frag # found chain 1w0hA in training set T0287 75 :VIKSIGVDK 1w0hA 280 :MLEKLGMDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10140 # 1hw1A.75.198 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKS 1hw1A 199 :LCSE T0287 80 :GVDK 1hw1A 204 :AHDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10142 # 2f8lA.75.72 read from T0287.t2k.many.frag # found chain 2f8lA in template set T0287 75 :VIKSIGVDK 2f8lA 61 :SYESIELEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10143 # 1ejbA.75.40 read from T0287.t2k.many.frag # found chain 1ejbA in template set T0287 75 :VIKSIGVDK 1ejbA 41 :RMASLGVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10144 # 1f5mA.75.55 read from T0287.t2k.many.frag # found chain 1f5mA in template set Warning: unaligning (T0287)K83 (1f5mA)I64 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1f5mA 56 :AYKSLAVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=10145 # 2cx1A.75.81 read from T0287.t2k.many.frag # found chain 2cx1A in template set Warning: unaligning (T0287)I79 (2cx1A)F85 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 2cx1A 81 :CLKA T0287 80 :GVDK 2cx1A 86 :GVDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=10147 # 1wteA.75.42 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKS 1wteA 43 :IFDY T0287 80 :GVD 1wteA 48 :SLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=10149 # 8abp.75.123 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 75 :VIKSIGVDK 8abp 124 :EMQKRGWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10150 # 1p4cA.75.335 read from T0287.t2k.many.frag # found chain 1p4cA in training set Warning: unaligning (T0287)I79 (1p4cA)I340 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1p4cA 336 :TLAQ T0287 80 :GVDK 1p4cA 341 :GCPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10152 # 1iuqA.76.47 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 76 :IKSIGVDKF 1iuqA 49 :VIESGNPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10153 # 1iirA.76.173 read from T0287.t2k.many.frag # found chain 1iirA in training set T0287 76 :IKSIGVDKF 1iirA 174 :RDAIGLPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10154 # 1smbA.76.20 read from T0287.t2k.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1smbA 21 :RQKHGV T0287 83 :KF 1smbA 28 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10156 # 1kr7A.76.90 read from T0287.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1kr7A 90 :CSAHGAP T0287 84 :F 1kr7A 98 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=10158 # 1psrA.76.45 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1psrA)N52 because N (gamma') conformation "forbidden" or filtered. T0287 76 :IKS 1psrA 46 :CDK T0287 80 :GV 1psrA 50 :GT T0287 83 :KF 1psrA 53 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=10161 # 1pa7A.76.81 read from T0287.t2k.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)K83 (1pa7A)K89 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1pa7A 82 :FKRMGVD T0287 84 :F 1pa7A 90 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=10163 # 1bc5A.76.42 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 76 :IKSIGVDKF 1bc5A 58 :LRALGLDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10164 # 1z3eB.76.23 read from T0287.t2k.many.frag # found chain 1z3eB in template set T0287 76 :IKSIGVDKF 1z3eB 266 :LKRAGINTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10165 # 2ar0A.76.76 read from T0287.t2k.many.frag # found chain 2ar0A in template set T0287 76 :IKSIGVDKF 2ar0A 77 :LVHLGEDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10166 # 2f22A.76.126 read from T0287.t2k.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (2f22A)L133 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKS 2f22A 126 :LKQ T0287 80 :GVD 2f22A 130 :GIN T0287 84 :F 2f22A 134 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=10169 # 1k8kG.76.82 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSI 1k8kG 83 :LISF T0287 81 :VDKF 1k8kG 88 :ANDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10171 # 1tqgA.76.51 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 76 :IKSIGVDKF 1tqgA 51 :AGTMGFSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10172 # 2fokA.76.331 read from T0287.t2k.many.frag # found chain 2fokA in template set T0287 76 :IKSIGVDKF 2fokA 332 :LKKLGFDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10173 # 1c1kA.76.123 read from T0287.t2k.many.frag # found chain 1c1kA in training set Warning: unaligning (T0287)I79 (1c1kA)V127 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1c1kA 124 :SKK T0287 80 :GVDKF 1c1kA 128 :EVSAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10175 # 1uocA.76.232 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 76 :IKSIGVDKF 1uocA 233 :ADELGLPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10176 # 1y0zA.76.80 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 76 :IKSIGVDKF 1y0zA 81 :VEAFGFDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10177 # 1wteA.76.43 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 76 :IKS 1wteA 44 :FDY T0287 80 :GVD 1wteA 48 :SLN T0287 84 :F 1wteA 52 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=10180 # 1ib2A.76.150 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 76 :IKSIGVDKF 1ib2A 978 :IECVQPQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10181 # 1ejbA.76.41 read from T0287.t2k.many.frag # found chain 1ejbA in template set Warning: unaligning (T0287)D82 (1ejbA)E48 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1ejbA 42 :MASLGV T0287 83 :KF 1ejbA 49 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=10183 # 2f5xA.76.303 read from T0287.t2k.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)F84 because last residue in template chain is (2f5xA)Q300 T0287 76 :IKSIGVDK 2f5xA 292 :FKKAGVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10184 # 1wu7A.76.248 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1wu7A 249 :LASYGVK T0287 84 :F 1wu7A 257 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=10186 # 1usgA.76.290 read from T0287.t2k.many.frag # found chain 1usgA in training set T0287 76 :IKSIGVDKF 1usgA 291 :LERTGSDEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10187 # 2f8lA.76.73 read from T0287.t2k.many.frag # found chain 2f8lA in template set T0287 76 :IKSIGVDKF 2f8lA 62 :YESIELENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10188 # 1hw1A.76.199 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKS 1hw1A 200 :CSE T0287 81 :VDKF 1hw1A 205 :HDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10190 # 2c5uA.76.329 read from T0287.t2k.many.frag # found chain 2c5uA in template set T0287 76 :IKSIGVDKF 2c5uA 329 :AKGAGMDHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10191 # 1rp4A.76.271 read from T0287.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0287)I79 (1rp4A)L313 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1rp4A)D314 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKS 1rp4A 310 :ISQ T0287 81 :VDKF 1rp4A 315 :TKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10193 # 1oqjA.76.48 read from T0287.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)V81 (1oqjA)K139 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKSIG 1oqjA 134 :VHLAG T0287 82 :DKF 1oqjA 140 :STL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10195 # 2cx1A.76.82 read from T0287.t2k.many.frag # found chain 2cx1A in template set T0287 76 :IKSIGVDKF 2cx1A 82 :LKAFGVDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10196 # 1ojrA.76.259 read from T0287.t2k.many.frag # found chain 1ojrA in training set T0287 76 :IKSIGVDKF 1ojrA 260 :GKRFGVTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10197 # 1a62.76.17 read from T0287.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1a62 18 :GENMGL T0287 84 :F 1a62 26 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=10199 # 1iuqA.77.48 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 77 :KSIGVDKFK 1iuqA 50 :IESGNPKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10200 # 1iirA.77.174 read from T0287.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)D82 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1iirA)P181 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGV 1iirA 175 :DAIGL T0287 84 :FK 1iirA 182 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10202 # 1k8kG.77.83 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1k8kG 84 :ISF T0287 81 :VDKFK 1k8kG 88 :ANDIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10204 # 1bc5A.77.43 read from T0287.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1bc5A 59 :RA T0287 80 :GVDKFK 1bc5A 62 :GLDDFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=10206 # 1kr7A.77.91 read from T0287.t2k.many.frag # found chain 1kr7A in training set T0287 77 :KSIGVDKFK 1kr7A 91 :SAHGAPDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10207 # 1smbA.77.21 read from T0287.t2k.many.frag # found chain 1smbA in training set T0287 77 :KSIGVDKFK 1smbA 22 :QKHGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10208 # 1hw1A.77.200 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KS 1hw1A 201 :SE T0287 81 :VDKFK 1hw1A 205 :HDQVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10210 # 1tqgA.77.52 read from T0287.t2k.many.frag # found chain 1tqgA in training set Warning: unaligning (T0287)I79 (1tqgA)M54 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1tqgA 52 :GT T0287 80 :GVDKFK 1tqgA 55 :GFSSMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10212 # 1wteA.77.44 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KSIGVD 1wteA 45 :DYHSLN T0287 84 :FK 1wteA 52 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10214 # 1z3eB.77.24 read from T0287.t2k.many.frag # found chain 1z3eB in template set T0287 77 :KSIGVDKFK 1z3eB 267 :KRAGINTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10215 # 1pa7A.77.82 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 77 :KSIGVDKFK 1pa7A 83 :KRMGVDKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=10216 # 1ib2A.77.151 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1ib2A)S985 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSI 1ib2A 979 :ECV T0287 81 :VD 1ib2A 983 :PQ T0287 84 :FK 1ib2A 986 :LQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=10219 # 1psrA.77.46 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1psrA 47 :DK T0287 80 :GVDKFK 1psrA 50 :GTNYLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10221 # 1c1kA.77.124 read from T0287.t2k.many.frag # found chain 1c1kA in training set Warning: unaligning (T0287)I79 (1c1kA)V127 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1c1kA 125 :KK T0287 80 :GVDKFK 1c1kA 128 :EVSAFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10223 # 2f22A.77.127 read from T0287.t2k.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)D82 (2f22A)N132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (2f22A)L133 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGV 2f22A 127 :KQSGI T0287 84 :FK 2f22A 134 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10225 # 1uocA.77.233 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 77 :KSIGVDKFK 1uocA 234 :DELGLPRFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10226 # 2ar0A.77.77 read from T0287.t2k.many.frag # found chain 2ar0A in template set Warning: unaligning (T0287)G80 (2ar0A)G81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (2ar0A)D83 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KSI 2ar0A 78 :VHL T0287 81 :V 2ar0A 82 :E T0287 83 :KFK 2ar0A 84 :DKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=10229 # 2c5uA.77.330 read from T0287.t2k.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)I79 (2c5uA)A332 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 2c5uA 330 :KG T0287 80 :GVDKFK 2c5uA 333 :GMDHLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10231 # 2f8lA.77.74 read from T0287.t2k.many.frag # found chain 2f8lA in template set T0287 77 :KSIGVDKFK 2f8lA 63 :ESIELENFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10232 # 1usgA.77.291 read from T0287.t2k.many.frag # found chain 1usgA in training set T0287 77 :KSIGVDKFK 1usgA 292 :ERTGSDEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10233 # 2fokA.77.332 read from T0287.t2k.many.frag # found chain 2fokA in template set T0287 77 :KSIGVDKFK 2fokA 333 :KKLGFDEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10234 # 1wu7A.77.249 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 77 :KSIGVD 1wu7A 250 :ASYGVK T0287 84 :FK 1wu7A 257 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10236 # 1ezwA.77.275 read from T0287.t2k.many.frag # found chain 1ezwA in training set T0287 77 :KSIGVDKFK 1ezwA 276 :EAIGKGDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10237 # 1oqjA.77.49 read from T0287.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)K85 (1oqjA)K143 because L (left) conformation "forbidden" or filtered. T0287 77 :KSIGVDKF 1oqjA 135 :HLAGKSTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10238 # 1jy1A.77.183 read from T0287.t2k.many.frag # found chain 1jy1A in training set T0287 77 :KSIGVDKFK 1jy1A 328 :TAYNAPSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10239 # 1h6gA.77.154 read from T0287.t2k.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 77 :KS 1h6gA 531 :QE T0287 80 :GVDKFK 1h6gA 534 :DVDGLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10241 # 1a62.77.18 read from T0287.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KSIGV 1a62 19 :ENMGL T0287 83 :KFK 1a62 25 :NLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10243 # 1yviA.77.86 read from T0287.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1yviA)Q92 T0287 77 :KSIG 1yviA 87 :ASVG T0287 83 :KFK 1yviA 93 :KVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10245 # 1q9uA.77.103 read from T0287.t2k.many.frag # found chain 1q9uA in training set T0287 77 :KSIGVDKFK 1q9uA 101 :GMMNDPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10246 # 1sedA.77.62 read from T0287.t2k.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)K83 (1sedA)T67 because E (beta_S) conformation "forbidden" or filtered. T0287 77 :KSIGVD 1sedA 61 :KAQGFV T0287 84 :FK 1sedA 68 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10248 # 1k8kG.78.84 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1k8kG)D90 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SI 1k8kG 85 :SF T0287 81 :VD 1k8kG 88 :AN T0287 84 :FKK 1k8kG 91 :IEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=10251 # 1bc5A.78.44 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 78 :SIGVDKFKK 1bc5A 60 :ALGLDDFGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10252 # 1iuqA.78.49 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 78 :SIGVDKFKK 1iuqA 51 :ESGNPKADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10253 # 1wteA.78.45 read from T0287.t2k.many.frag # found chain 1wteA in template set T0287 78 :SIGVDKFKK 1wteA 46 :YHSLNDFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10254 # 1hw1A.78.201 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SI 1hw1A 202 :EG T0287 81 :VDKFKK 1hw1A 205 :HDQVYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10256 # 1kr7A.78.92 read from T0287.t2k.many.frag # found chain 1kr7A in training set T0287 78 :SIGVDKFKK 1kr7A 92 :AHGAPDLGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10257 # 1iirA.78.175 read from T0287.t2k.many.frag # found chain 1iirA in training set T0287 78 :SIGVDKFKK 1iirA 176 :AIGLPPVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=10258 # 1ib2A.78.152 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SI 1ib2A 980 :CV T0287 81 :VDKFKK 1ib2A 983 :PQSLQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10260 # 1tqgA.78.53 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 78 :SIGVDKFKK 1tqgA 53 :TMGFSSMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10261 # 1z3eB.78.25 read from T0287.t2k.many.frag # found chain 1z3eB in template set T0287 78 :SIGVDKFKK 1z3eB 268 :RAGINTVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10262 # 1h6gA.78.155 read from T0287.t2k.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 78 :S 1h6gA 532 :E T0287 81 :VDKFKK 1h6gA 535 :VDGLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10264 # 1c1kA.78.125 read from T0287.t2k.many.frag # found chain 1c1kA in training set T0287 78 :SIGVDKFKK 1c1kA 126 :KVEVSAFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10265 # 1jy1A.78.184 read from T0287.t2k.many.frag # found chain 1jy1A in training set T0287 78 :SIGVDKFKK 1jy1A 329 :AYNAPSLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10266 # 1smbA.78.22 read from T0287.t2k.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)K83 (1smbA)P28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K86 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0287 78 :SIGVD 1smbA 23 :KHGVP T0287 84 :FK 1smbA 29 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10268 # 1sedA.78.63 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 78 :SIGVDKFKK 1sedA 62 :AQGFVTFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10269 # 2aeuA.78.252 read from T0287.t2k.many.frag # found chain 2aeuA in template set Warning: unaligning (T0287)G80 (2aeuA)N255 because E (beta_S) conformation "forbidden" or filtered. T0287 78 :SI 2aeuA 253 :NF T0287 81 :VDKFKK 2aeuA 256 :LERIRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10271 # 2c5uA.78.331 read from T0287.t2k.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)V81 (2c5uA)M334 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIG 2c5uA 331 :GAG T0287 82 :DKFKK 2c5uA 335 :DHLFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=10273 # 1ezwA.78.276 read from T0287.t2k.many.frag # found chain 1ezwA in training set T0287 78 :SIGVDKFKK 1ezwA 277 :AIGKGDFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10274 # 1u00A.78.186 read from T0287.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)S78 (1u00A)G575 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :IGVDKFKK 1u00A 576 :DDVDAIEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=10275 # 1usgA.78.292 read from T0287.t2k.many.frag # found chain 1usgA in training set T0287 78 :SIGVDKFKK 1usgA 293 :RTGSDEPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10276 # 1psrA.78.47 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 1psrA 48 :K T0287 80 :GVDKFKK 1psrA 50 :GTNYLAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10278 # 1sqsA.78.217 read from T0287.t2k.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 78 :SIGVD 1sqsA 218 :LFEAN T0287 84 :FKK 1sqsA 224 :LEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10280 # 1zhxA.78.329 read from T0287.t2k.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)G80 (1zhxA)D328 because N (gamma') conformation "forbidden" or filtered. T0287 78 :SI 1zhxA 326 :LG T0287 81 :VDKFKK 1zhxA 329 :FNLIAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10282 # 1owlA.78.266 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 78 :SIGVDKFKK 1owlA 267 :LSRSDEARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10283 # 2f22A.78.128 read from T0287.t2k.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)D82 (2f22A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 2f22A 128 :QSGI T0287 83 :KFKK 2f22A 133 :LPKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10285 # 1lo7A.78.40 read from T0287.t2k.many.frag # found chain 1lo7A in training set Warning: unaligning (T0287)D82 (1lo7A)P45 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 1lo7A 41 :KCGL T0287 83 :KFKK 1lo7A 46 :PWRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10287 # 2fbqA.78.121 read from T0287.t2k.many.frag # found chain 2fbqA in template set Warning: unaligning (T0287)I79 (2fbqA)Q121 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 2fbqA 120 :S T0287 80 :GVDKFKK 2fbqA 122 :SQGHLRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10289 # 1uvjA.78.179 read from T0287.t2k.many.frag # found chain 1uvjA in template set T0287 78 :SIGVDKFKK 1uvjA 180 :LMLQGKFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10290 # 1uocA.78.234 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 78 :SIGVDKFKK 1uocA 235 :ELGLPRFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10291 # 1q9uA.78.104 read from T0287.t2k.many.frag # found chain 1q9uA in training set T0287 78 :SIGVDKFKK 1q9uA 102 :MMNDPALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10292 # 1bc5A.79.45 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 79 :IGVDKFKKV 1bc5A 61 :LGLDDFGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10293 # 1k8kG.79.85 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 1k8kG 86 :F T0287 81 :VDKFKKV 1k8kG 88 :ANDIEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10295 # 1wteA.79.46 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1wteA 48 :SLNDFDEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10296 # 1hw1A.79.202 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKV 1hw1A 205 :HDQVYET Number of specific fragments extracted= 1 number of extra gaps= 1 total=10297 # 1h6gA.79.156 read from T0287.t2k.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1h6gA 534 :DVDGLDRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=10298 # 1sedA.79.64 read from T0287.t2k.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)K83 (1sedA)T67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IGVD 1sedA 63 :QGFV T0287 85 :KKV 1sedA 69 :DKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10300 # 1ib2A.79.153 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 79 :IGVDKFKKV 1ib2A 981 :VQPQSLQFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10301 # 1kr7A.79.93 read from T0287.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F84 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IGV 1kr7A 93 :HGA T0287 83 :K 1kr7A 97 :D T0287 85 :KKV 1kr7A 99 :GHA Number of specific fragments extracted= 3 number of extra gaps= 2 total=10304 # 1iuqA.79.50 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 79 :IGVDKFKKV 1iuqA 52 :SGNPKADEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10305 # 1iirA.79.176 read from T0287.t2k.many.frag # found chain 1iirA in training set T0287 79 :IGVDKFKKV 1iirA 177 :IGLPPVEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10306 # 2aeuA.79.253 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 79 :IGVDKFKKV 2aeuA 254 :FNLERIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10307 # 1uvjA.79.180 read from T0287.t2k.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 79 :IGV 1uvjA 181 :MLQ T0287 83 :KFKKV 1uvjA 185 :KFDDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10309 # 2fbqA.79.122 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 79 :IGVDKFKKV 2fbqA 121 :QSQGHLRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10310 # 1zhxA.79.330 read from T0287.t2k.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)I79 (1zhxA)G327 because L (left) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1zhxA 328 :DFNLIAKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=10311 # 1u00A.79.187 read from T0287.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)I79 (1u00A)D576 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1u00A)D577 because D (zeta) conformation "forbidden" or filtered. T0287 81 :VDKFKKV 1u00A 578 :VDAIEQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10312 # 1ezwA.79.277 read from T0287.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 79 :IGV 1ezwA 278 :IGK T0287 83 :KFKKV 1ezwA 282 :DFGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10314 # 2f6kA.79.131 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 79 :IGVDKFKKV 2f6kA 132 :FGSPVLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10315 # 1jy1A.79.185 read from T0287.t2k.many.frag # found chain 1jy1A in training set Warning: unaligning (T0287)F84 (1jy1A)L335 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IGVDK 1jy1A 330 :YNAPS T0287 85 :KKV 1jy1A 336 :KEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=10317 # 1z3eB.79.26 read from T0287.t2k.many.frag # found chain 1z3eB in template set T0287 79 :IGVDKFKKV 1z3eB 269 :AGINTVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10318 # 1sqsA.79.218 read from T0287.t2k.many.frag # found chain 1sqsA in training set T0287 79 :IGVDKFKKV 1sqsA 219 :FEANSLEEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10319 # 1owlA.79.267 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 79 :IGVDKFKKV 1owlA 268 :SRSDEARNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10320 # 1z3xA.79.107 read from T0287.t2k.many.frag # found chain 1z3xA in template set T0287 79 :IGVDKFKKV 1z3xA 105 :LVAEKFEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10321 # 1tqgA.79.54 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 79 :IGVDKFKKV 1tqgA 54 :MGFSSMAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10322 # 1xm9A.79.430 read from T0287.t2k.many.frag # found chain 1xm9A in template set T0287 79 :IGVDKFKKV 1xm9A 674 :SASPKAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10323 # 1c1kA.79.126 read from T0287.t2k.many.frag # found chain 1c1kA in training set T0287 79 :IGVDKFKKV 1c1kA 127 :VEVSAFKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10324 # 1usgA.79.293 read from T0287.t2k.many.frag # found chain 1usgA in training set T0287 79 :IGVDKFKKV 1usgA 294 :TGSDEPLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10325 # 1rwhA.79.27 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 79 :IGVDKFKKV 1rwhA 28 :AGDPDFAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10326 # 2anuA.79.76 read from T0287.t2k.many.frag # found chain 2anuA in template set Warning: unaligning (T0287)G80 (2anuA)T66 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 2anuA 65 :I T0287 81 :VDKFKKV 2anuA 67 :EDKFQDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10328 # 2c5uA.79.332 read from T0287.t2k.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)I79 (2c5uA)A332 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 2c5uA 333 :GMDHLFGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10329 # 1psrA.79.48 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 79 :IGVDKFKKV 1psrA 49 :KGTNYLADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10330 # 1bc5A.80.46 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 80 :GVDKFKKVY 1bc5A 62 :GLDDFGRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10331 # 1k8kG.80.86 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1k8kG 88 :ANDIEKAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=10332 # 1sedA.80.65 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 80 :GVDKFKKVY 1sedA 64 :GFVTFDKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10333 # 1ib2A.80.154 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 80 :GVDKFKKVY 1ib2A 982 :QPQSLQFII Number of specific fragments extracted= 1 number of extra gaps= 0 total=10334 # 1wteA.80.47 read from T0287.t2k.many.frag # found chain 1wteA in template set T0287 80 :GVDKFKKVY 1wteA 48 :SLNDFDELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10335 # 1h6gA.80.157 read from T0287.t2k.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1h6gA 535 :VDGLDRTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10336 # 1hw1A.80.203 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 80 :GVDKFKKVY 1hw1A 204 :AHDQVYETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10337 # 1uvjA.80.181 read from T0287.t2k.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 80 :GV 1uvjA 182 :LQ T0287 83 :KFKKVY 1uvjA 185 :KFDDAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10339 # 2f6kA.80.132 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 80 :GVDKFKKVY 2f6kA 133 :GSPVLERVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10340 # 1ezwA.80.278 read from T0287.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 80 :GV 1ezwA 279 :GK T0287 83 :KFKKVY 1ezwA 282 :DFGTAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10342 # 1rwhA.80.28 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 80 :GVDKFKKVY 1rwhA 29 :GDPDFAKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10343 # 2aeuA.80.254 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 80 :GVDKFKKVY 2aeuA 255 :NLERIRKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10344 # 1zhxA.80.331 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 80 :GVDKFKKVY 1zhxA 328 :DFNLIAKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10345 # 1z3xA.80.108 read from T0287.t2k.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 80 :GV 1z3xA 106 :VA T0287 83 :KFKKVY 1z3xA 109 :KFEAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10347 # 2anuA.80.77 read from T0287.t2k.many.frag # found chain 2anuA in template set Warning: unaligning (T0287)G80 (2anuA)T66 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 2anuA 67 :EDKFQDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10348 # 1owlA.80.268 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 80 :GVDKFKKVY 1owlA 269 :RSDEARNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10349 # 1u00A.80.188 read from T0287.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)G80 (1u00A)D577 because D (zeta) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1u00A 578 :VDAIEQAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10350 # 2fbqA.80.123 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 80 :GVDKFKKVY 2fbqA 122 :SQGHLRKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10351 # 1sqsA.80.219 read from T0287.t2k.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1sqsA 220 :EAN T0287 84 :FKKVY 1sqsA 224 :LEEWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10353 # 1kr7A.80.94 read from T0287.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. T0287 80 :GV 1kr7A 94 :GA T0287 83 :KFKKVY 1kr7A 97 :DLGHAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10355 # 1iuqA.80.51 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 80 :GVDKFKKVY 1iuqA 53 :GNPKADEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10356 # 1e9rA.80.164 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)D82 (1e9rA)P237 because N (gamma') conformation "forbidden" or filtered. T0287 80 :GV 1e9rA 235 :GT T0287 83 :KFKKVY 1e9rA 238 :SMRELF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10358 # 1jy1A.80.186 read from T0287.t2k.many.frag # found chain 1jy1A in training set T0287 80 :GVDKFKKVY 1jy1A 331 :NAPSLKEWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10359 # 1usgA.80.294 read from T0287.t2k.many.frag # found chain 1usgA in training set T0287 80 :GVDKFKKVY 1usgA 295 :GSDEPLALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10360 # 1iirA.80.177 read from T0287.t2k.many.frag # found chain 1iirA in training set T0287 80 :GVDKFKKVY 1iirA 178 :GLPPVEDIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10361 # 1j79A.80.145 read from T0287.t2k.many.frag # found chain 1j79A in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1j79A)I147 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1j79A)I147 T0287 82 :DKFKKVY 1j79A 148 :DIFDREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10362 # 1rcwA.80.192 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)D82 (1rcwA)D195 because L (left) conformation "forbidden" or filtered. T0287 80 :GV 1rcwA 193 :LK T0287 83 :KFKKVY 1rcwA 196 :DADKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10364 # 2cc3A.80.25 read from T0287.t2k.many.frag # found chain 2cc3A in template set T0287 80 :GVDKFKKVY 2cc3A 113 :DADTAQYAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10365 # 2bz1A.80.96 read from T0287.t2k.many.frag # found chain 2bz1A in template set Warning: unaligning (T0287)G80 (2bz1A)G97 because S (epsilon) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 2bz1A 98 :LLNKIRAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=10366 # 1gvdA.80.21 read from T0287.t2k.many.frag # found chain 1gvdA in training set T0287 80 :GVDKFKKVY 1gvdA 111 :GPKRWSVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10367 # 1k8kG.81.87 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 81 :VDKFKKVYR 1k8kG 88 :ANDIEKAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10368 # 1bc5A.81.47 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 81 :VDKFKKVYR 1bc5A 63 :LDDFGRYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10369 # 1h6gA.81.158 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 81 :VDKFKKVYR 1h6gA 535 :VDGLDRTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10370 # 1sedA.81.66 read from T0287.t2k.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDK 1sedA 65 :FVT T0287 85 :KKVYR 1sedA 69 :DKLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10372 # 1hw1A.81.204 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 81 :VDKFKKVYR 1hw1A 205 :HDQVYETVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10373 # 2f6kA.81.133 read from T0287.t2k.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)F84 (2f6kA)L137 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDK 2f6kA 134 :SPV T0287 85 :KKVYR 2f6kA 138 :ERVYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10375 # 1ib2A.81.155 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 81 :VDKFKKVYR 1ib2A 983 :PQSLQFIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=10376 # 2aeuA.81.255 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 81 :VDKFKKVYR 2aeuA 256 :LERIRKAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10377 # 1uvjA.81.182 read from T0287.t2k.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 81 :V 1uvjA 183 :Q T0287 83 :KFKKVYR 1uvjA 185 :KFDDAYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10379 # 1rwhA.81.29 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 81 :VDKFKKVYR 1rwhA 30 :DPDFAKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10380 # 1wteA.81.48 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 81 :VD 1wteA 49 :LN T0287 84 :FKKVYR 1wteA 52 :FDELVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10382 # 1pb7A.81.187 read from T0287.t2k.many.frag # found chain 1pb7A in training set Warning: unaligning (T0287)F84 (1pb7A)L191 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDK 1pb7A 188 :QVE T0287 85 :KKVYR 1pb7A 192 :STMYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10384 # 1ezwA.81.279 read from T0287.t2k.many.frag # found chain 1ezwA in training set T0287 81 :VDKFKKVYR 1ezwA 280 :KGDFGTAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10385 # 1z3xA.81.109 read from T0287.t2k.many.frag # found chain 1z3xA in template set T0287 81 :VDKFKKVYR 1z3xA 107 :AEKFEAADR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10386 # 1zhxA.81.332 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 81 :VDKFKKVYR 1zhxA 329 :FNLIAKTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10387 # 1u00A.81.189 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 81 :VDKFKKVYR 1u00A 578 :VDAIEQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10388 # 2anuA.81.78 read from T0287.t2k.many.frag # found chain 2anuA in template set T0287 81 :VDKFKKVYR 2anuA 67 :EDKFQDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10389 # 2fbqA.81.124 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 81 :VDKFKKVYR 2fbqA 123 :QGHLRKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10390 # 1lugA.81.151 read from T0287.t2k.many.frag # found chain 1lugA in training set T0287 81 :VDKFKKVYR 1lugA 153 :KPGLQKVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10391 # 1owlA.81.269 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 81 :VDKFKKVYR 1owlA 270 :SDEARNSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10392 # 1m2oA.81.541 read from T0287.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0287)K83 (1m2oA)D544 because E (beta_S) conformation "forbidden" or filtered. T0287 81 :VD 1m2oA 542 :TD T0287 84 :FKKVYR 1m2oA 545 :GADVIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10394 # 1e9rA.81.165 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 81 :VDKFKKVYR 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10395 # 2b6cA.81.121 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 82 :DKFKKVYR 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10396 # 1aa7A.81.105 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K83 (1aa7A)T108 because E (beta_S) conformation "forbidden" or filtered. T0287 81 :VD 1aa7A 106 :EI T0287 84 :FKKVYR 1aa7A 109 :FHGAKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10398 # 1jy1A.81.187 read from T0287.t2k.many.frag # found chain 1jy1A in training set T0287 81 :VDKFKKVYR 1jy1A 332 :APSLKEWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=10399 # 2bz1A.81.97 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 81 :VDKFKKVYR 2bz1A 98 :LLNKIRAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10400 # 1yw3A.81.115 read from T0287.t2k.many.frag # found chain 1yw3A in template set T0287 81 :VDKFKKVYR 1yw3A 116 :AENFQPWSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10401 # 2ae5B.81.320 read from T0287.t2k.many.frag # found chain 2ae5B in template set T0287 81 :VDKFKKVYR 2ae5B 321 :DPEVQAAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10402 # 1iirA.81.178 read from T0287.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)K85 (1iirA)E183 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDKF 1iirA 179 :LPPV T0287 86 :KVYR 1iirA 184 :DIFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10404 # 2cc3A.81.26 read from T0287.t2k.many.frag # found chain 2cc3A in template set Warning: unaligning (T0287)K83 (2cc3A)T116 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VD 2cc3A 114 :AD T0287 84 :FKKVYR 2cc3A 117 :AQYAYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10406 # 1k8kG.82.88 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 82 :DKFKKVYRL 1k8kG 89 :NDIEKAVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10407 # 1h6gA.82.159 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 82 :DKFKKVYRL 1h6gA 536 :DGLDRTAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10408 # 1hw1A.82.205 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 82 :DKFKKVYRL 1hw1A 206 :DQVYETVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10409 # 1sedA.82.67 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 82 :DKFKKVYRL 1sedA 66 :VTFDKLLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10410 # 2f6kA.82.134 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 82 :DKFKKVYRL 2f6kA 135 :PVLERVYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10411 # 1ib2A.82.156 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)F84 (1ib2A)L986 because G (3-10) conformation "forbidden" or filtered. T0287 82 :DK 1ib2A 984 :QS T0287 85 :KKVYRL 1ib2A 987 :QFIIDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10413 # 1m2oA.82.542 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 82 :DKFKKVYRL 1m2oA 543 :DDGADVIRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10414 # 1pb7A.82.188 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 82 :DKFKKVYRL 1pb7A 189 :VELSTMYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10415 # 1bc5A.82.48 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 82 :DKFKKVYRL 1bc5A 64 :DDFGRYLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10416 # 1rwhA.82.30 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 82 :DKFKKVYRL 1rwhA 31 :PDFAKAITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10417 # 2aeuA.82.256 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 82 :DKFKKVYRL 2aeuA 257 :ERIRKAFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=10418 # 1ezwA.82.280 read from T0287.t2k.many.frag # found chain 1ezwA in training set T0287 82 :DKFKKVYRL 1ezwA 281 :GDFGTAIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10419 # 1uvjA.82.183 read from T0287.t2k.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1uvjA 185 :KFDDAYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10420 # 1zhxA.82.333 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 82 :DKFKKVYRL 1zhxA 330 :NLIAKTKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10421 # 1z3xA.82.110 read from T0287.t2k.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1z3xA 109 :KFEAADRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10422 # 1e9rA.82.166 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 82 :DKFKKVYRL 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10423 # 2b6cA.82.122 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 82 :DKFKKVYRL 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10424 # 1u00A.82.190 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 82 :DKFKKVYRL 1u00A 579 :DAIEQAIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10425 # 1lugA.82.152 read from T0287.t2k.many.frag # found chain 1lugA in training set T0287 82 :DKFKKVYRL 1lugA 154 :PGLQKVVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10426 # 2bz1A.82.98 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 82 :DKFKKVYRL 2bz1A 99 :LNKIRAYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10427 # 1sz9A.82.87 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 82 :DKFKKVYRL 1sz9A 88 :NLYKRTYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10428 # 1aa7A.82.106 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 82 :DKFKKVYRL 1aa7A 107 :ITFHGAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10429 # 1wteA.82.49 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 82 :D 1wteA 50 :N T0287 84 :FKKVYRL 1wteA 52 :FDELVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10431 # 1owlA.82.270 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 82 :DKFKKVYRL 1owlA 271 :DEARNSIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10432 # 2ae5B.82.321 read from T0287.t2k.many.frag # found chain 2ae5B in template set T0287 82 :DKFKKVYRL 2ae5B 322 :PEVQAAARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10433 # 1vykA.82.127 read from T0287.t2k.many.frag # found chain 1vykA in template set T0287 82 :DKFKKVYRL 1vykA 128 :TEAEKYYGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10434 # 1j93A.82.167 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 82 :DKFKKVYRL 1j93A 167 :KNFTKIKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10435 # 1xkpA.82.118 read from T0287.t2k.many.frag # found chain 1xkpA in training set T0287 82 :DKFKKVYRL 1xkpA 150 :PELAHLSHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10436 # 1qs1A.82.304 read from T0287.t2k.many.frag # found chain 1qs1A in training set T0287 82 :DKFKKVYRL 1qs1A 305 :QDYKEINNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10437 # 1ae9A.82.6 read from T0287.t2k.many.frag # found chain 1ae9A in template set T0287 82 :DKFKKVYRL 1ae9A 183 :DEYLKIYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10438 # 1k8kG.83.89 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 83 :KFKKVYRLL 1k8kG 90 :DIEKAVQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10439 # 1hw1A.83.206 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 83 :KFKKVYRLL 1hw1A 207 :QVYETVRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10440 # 1m2oA.83.543 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 83 :KFKKVYRLL 1m2oA 544 :DGADVIRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10441 # 1h6gA.83.160 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 83 :KFKKVYRLL 1h6gA 537 :GLDRTAGAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10442 # 2f6kA.83.135 read from T0287.t2k.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)F84 (2f6kA)L137 because G (3-10) conformation "forbidden" or filtered. T0287 83 :K 2f6kA 136 :V T0287 85 :KKVYRLL 2f6kA 138 :ERVYQEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10444 # 1sedA.83.68 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 83 :KFKKVYRLL 1sedA 67 :TFDKLLALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10445 # 1pb7A.83.189 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 83 :KFKKVYRLL 1pb7A 190 :ELSTMYRHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10446 # 1sz9A.83.88 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 83 :KFKKVYRLL 1sz9A 89 :LYKRTYLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10447 # 1rwhA.83.31 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 83 :KFKKVYRLL 1rwhA 32 :DFAKAITAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10448 # 1ib2A.83.157 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 83 :KFKKVYRLL 1ib2A 985 :SLQFIIDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10449 # 1bc5A.83.49 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 83 :KFKKVYRLL 1bc5A 65 :DFGRYLSML Number of specific fragments extracted= 1 number of extra gaps= 0 total=10450 # 2aeuA.83.257 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 83 :KFKKVYRLL 2aeuA 258 :RIRKAFERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10451 # 1e9rA.83.167 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 83 :KFKKVYRLL 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10452 # 1u00A.83.191 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 83 :KFKKVYRLL 1u00A 580 :AIEQAIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10453 # 1zhxA.83.334 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 83 :KFKKVYRLL 1zhxA 331 :LIAKTKTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10454 # 1vykA.83.128 read from T0287.t2k.many.frag # found chain 1vykA in template set T0287 83 :KFKKVYRLL 1vykA 129 :EAEKYYGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10455 # 1owlA.83.271 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 83 :KFKKVYRLL 1owlA 272 :EARNSIRVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10456 # 1z3xA.83.111 read from T0287.t2k.many.frag # found chain 1z3xA in template set T0287 83 :KFKKVYRLL 1z3xA 109 :KFEAADRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10457 # 1uvjA.83.184 read from T0287.t2k.many.frag # found chain 1uvjA in template set T0287 83 :KFKKVYRLL 1uvjA 185 :KFDDAYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10458 # 2bz1A.83.99 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 83 :KFKKVYRLL 2bz1A 100 :NKIRAYALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10459 # 2b6cA.83.123 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 83 :KFKKVYRLL 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10460 # 2audA.83.70 read from T0287.t2k.many.frag # found chain 2audA in template set Warning: unaligning (T0287)K83 (2audA)G72 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 2audA 73 :HEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=10461 # 1k55A.83.98 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 83 :KFKKVYRLL 1k55A 119 :VFQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10462 # 1ae9A.83.7 read from T0287.t2k.many.frag # found chain 1ae9A in template set T0287 83 :KFKKVYRLL 1ae9A 184 :EYLKIYQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10463 # 1ezwA.83.281 read from T0287.t2k.many.frag # found chain 1ezwA in training set T0287 83 :KFKKVYRLL 1ezwA 282 :DFGTAIGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10464 # 1zj8A.83.152 read from T0287.t2k.many.frag # found chain 1zj8A in template set T0287 83 :KFKKVYRLL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10465 # 1aa7A.83.107 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 83 :KFKKVYRLL 1aa7A 108 :TFHGAKEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10466 # 2fbqA.83.126 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 83 :KFKKVYRLL 2fbqA 125 :HLRKYLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10467 # 1zybA.83.135 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 83 :KFKKVYRLL 1zybA 124 :IFRLNYMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10468 # 1j93A.83.168 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 83 :KFKKVYRLL 1j93A 168 :NFTKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10469 # 1m2oA.84.544 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 84 :FKKVYRLLE 1m2oA 545 :GADVIRWLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10470 # 1k8kG.84.90 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 84 :FKKVYRLLE 1k8kG 91 :IEKAVQSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10471 # 1hw1A.84.207 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 84 :FKKVYRLLE 1hw1A 208 :VYETVRRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10472 # 1h6gA.84.161 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 84 :FKKVYRLLE 1h6gA 538 :LDRTAGAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10473 # 2f6kA.84.136 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 84 :FKKVYRLLE 2f6kA 137 :LERVYQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10474 # 1pb7A.84.190 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 84 :FKKVYRLLE 1pb7A 191 :LSTMYRHME Number of specific fragments extracted= 1 number of extra gaps= 0 total=10475 # 1sz9A.84.89 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 84 :FKKVYRLLE 1sz9A 90 :YKRTYLLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10476 # 2audA.84.71 read from T0287.t2k.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 2audA 73 :HEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=10477 # 1rwhA.84.32 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 84 :FKKVYRLLE 1rwhA 33 :FAKAITALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10478 # 1sedA.84.69 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 84 :FKKVYRLLE 1sedA 68 :FDKLLALFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10479 # 1e9rA.84.168 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 84 :FKKVYRLLE 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10480 # 1ib2A.84.158 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 84 :FKKVYRLLE 1ib2A 986 :LQFIIDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10481 # 1k55A.84.99 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 84 :FKKVYRLLE 1k55A 120 :FQQIAREVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10482 # 1qmgA.84.297 read from T0287.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1qmgA 369 :MLALYNSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10483 # 1u00A.84.192 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 84 :FKKVYRLLE 1u00A 581 :IEQAIKNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10484 # 1bc5A.84.50 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 84 :FKKVYRLLE 1bc5A 66 :FGRYLSMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10485 # 2bz1A.84.100 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 84 :FKKVYRLLE 2bz1A 101 :KIRAYALQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10486 # 1ezwA.84.282 read from T0287.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)E92 (1ezwA)D291 because E (beta_S) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1ezwA 283 :FGTAIGLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=10487 # 1bf5A.84.49 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 84 :FKKVYRLLE 1bf5A 199 :LKKMYLMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10488 # 1zhxA.84.335 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 84 :FKKVYRLLE 1zhxA 332 :IAKTKTELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10489 # 1zj8A.84.153 read from T0287.t2k.many.frag # found chain 1zj8A in template set T0287 84 :FKKVYRLLE 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10490 # 2fkcA.84.145 read from T0287.t2k.many.frag # found chain 2fkcA in template set T0287 84 :FKKVYRLLE 2fkcA 146 :QNIVLNWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10491 # 1owlA.84.272 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 84 :FKKVYRLLE 1owlA 273 :ARNSIRVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10492 # 2aeuA.84.258 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 84 :FKKVYRLLE 2aeuA 259 :IRKAFERAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10493 # 1j93A.84.169 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 84 :FKKVYRLLE 1j93A 169 :FTKIKRLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10494 # 1jx4A.84.209 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1jx4A 210 :FDKLKGMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10495 # 1aa7A.84.108 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 84 :FKKVYRLLE 1aa7A 109 :FHGAKEISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10496 # 1vykA.84.129 read from T0287.t2k.many.frag # found chain 1vykA in template set T0287 84 :FKKVYRLLE 1vykA 130 :AEKYYGQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10497 # 1ae9A.84.8 read from T0287.t2k.many.frag # found chain 1ae9A in template set T0287 84 :FKKVYRLLE 1ae9A 185 :YLKIYQAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10498 # 2b6cA.84.124 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 84 :FKKVYRLLE 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10499 # 1m2oA.85.545 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 85 :KKVYRLLES 1m2oA 546 :ADVIRWLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10500 # 1hw1A.85.208 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 85 :KKVYRLLES 1hw1A 209 :YETVRRYGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10501 # 1h6gA.85.162 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 85 :KKVYRLLES 1h6gA 539 :DRTAGAIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10502 # 1k8kG.85.91 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 85 :KKVYRLLES 1k8kG 92 :EKAVQSLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10503 # 1sz9A.85.90 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 85 :KKVYRLLES 1sz9A 91 :KRTYLLVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10504 # 2audA.85.72 read from T0287.t2k.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 2audA 74 :EARYKLF T0287 93 :S 2audA 82 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=10506 # 1pb7A.85.191 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 85 :KKVYRLLES 1pb7A 192 :STMYRHMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10507 # 2f6kA.85.137 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 85 :KKVYRLLES 2f6kA 138 :ERVYQELDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10508 # 1bf5A.85.50 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 85 :KKVYRLLES 1bf5A 200 :KKMYLMLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10509 # 1qmgA.85.298 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 85 :KKVYRLLES 1qmgA 370 :LALYNSLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10510 # 1e9rA.85.169 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 85 :KKVYRLLES 1e9rA 240 :RELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10511 # 1jx4A.85.210 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 85 :KKVYRLLES 1jx4A 211 :DKLKGMIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10512 # 1rwhA.85.33 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 85 :KKVYRLLES 1rwhA 34 :AKAITALNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10513 # 2fkcA.85.146 read from T0287.t2k.many.frag # found chain 2fkcA in template set T0287 85 :KKVYRLLES 2fkcA 147 :NIVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10514 # 2bz1A.85.101 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 85 :KKVYRLLES 2bz1A 102 :IRAYALQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10515 # 1zhxA.85.336 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 85 :KKVYRLLES 1zhxA 333 :AKTKTELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10516 # 2ccyA.85.82 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 85 :KKVYR 2ccyA 83 :LEGWK T0287 92 :ES 2ccyA 90 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10518 # 1vraB.85.64 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 85 :KKVYRLLES 1vraB 261 :ANFYKALQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10519 # 1zybA.85.137 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 85 :KKVYRLLES 1zybA 126 :RLNYMNIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10520 # 1zj8A.85.154 read from T0287.t2k.many.frag # found chain 1zj8A in template set T0287 85 :KKVYRLLES 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10521 # 1k55A.85.100 read from T0287.t2k.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1k55A 121 :QQIAREV T0287 93 :S 1k55A 129 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=10523 # 1usyA.85.147 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 85 :KKVYRLLES 1usyA 148 :EKVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10524 # 1owlA.85.273 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 85 :KKVYRLLES 1owlA 274 :RNSIRVWQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10525 # 1w2xA.85.693 read from T0287.t2k.many.frag # found chain 1w2xA in template set T0287 85 :KKVYRLLES 1w2xA 2169 :RQVATWIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10526 # 2erbA.85.73 read from T0287.t2k.many.frag # found chain 2erbA in template set T0287 85 :KKVYRLLES 2erbA 74 :EKLHDSLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10527 # 1jt6A.85.112 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 85 :KKVYRLLES 1jt6A 113 :NEKMNKLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10528 # 1j93A.85.170 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 85 :KKVYRLLES 1j93A 170 :TKIKRLAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10529 # 2b6cA.85.125 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)S93 (2b6cA)G131 because T (delta_L) conformation "forbidden" or filtered. T0287 85 :KKVYRLLE 2b6cA 123 :PTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=10530 # 1x6iA.85.43 read from T0287.t2k.many.frag # found chain 1x6iA in training set T0287 85 :KKVYRLLES 1x6iA 41 :RIFIRLLEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10531 # 1aa7A.85.109 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 85 :KKVYRLLES 1aa7A 110 :HGAKEISLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10532 # 1m2oA.86.546 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 86 :KVYRLLESE 1m2oA 547 :DVIRWLDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10533 # 1hw1A.86.209 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 86 :KVYRLLESE 1hw1A 210 :ETVRRYGHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10534 # 1h6gA.86.163 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 86 :KVYRLLESE 1h6gA 540 :RTAGAIRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10535 # 1k8kG.86.92 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 86 :KVYRLLESE 1k8kG 93 :KAVQSLDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10536 # 1jx4A.86.211 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 86 :KVYRLLESE 1jx4A 212 :KLKGMIGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10537 # 1qmgA.86.299 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 86 :KVYRLLESE 1qmgA 371 :ALYNSLSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10538 # 2fkcA.86.147 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 T0287 86 :KVYRLLES 2fkcA 148 :IVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10539 # 1sz9A.86.91 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1sz9A 92 :RTYLLV T0287 93 :SE 1sz9A 99 :NT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10541 # 1bf5A.86.51 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 86 :KVYRLLESE 1bf5A 201 :KMYLMLDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10542 # 1e9rA.86.170 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1e9rA 241 :ELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10543 # 1rwhA.86.34 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 86 :KVYRLLESE 1rwhA 35 :KAITALNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10544 # 1pb7A.86.192 read from T0287.t2k.many.frag # found chain 1pb7A in training set Warning: unaligning (T0287)S93 (1pb7A)K200 because G (3-10) conformation "forbidden" or filtered. T0287 86 :KVYRLLE 1pb7A 193 :TMYRHME T0287 94 :E 1pb7A 201 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=10546 # 2audA.86.73 read from T0287.t2k.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLL 2audA 75 :ARYKLF T0287 93 :SE 2audA 82 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=10548 # 1vls.86.101 read from T0287.t2k.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1vls 136 :ELIQFLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=10549 # 2ccyA.86.83 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 86 :KVYR 2ccyA 84 :EGWK T0287 92 :ESE 2ccyA 90 :ATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10551 # 1w96A.86.529 read from T0287.t2k.many.frag # found chain 1w96A in training set T0287 86 :KVYRLLESE 1w96A 542 :YLIKLLETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10552 # 1k55A.86.101 read from T0287.t2k.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1k55A 122 :QIAREV T0287 93 :SE 1k55A 129 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10554 # 1w2xA.86.694 read from T0287.t2k.many.frag # found chain 1w2xA in template set T0287 86 :KVYRLLESE 1w2xA 2170 :QVATWIEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10555 # 2erbA.86.74 read from T0287.t2k.many.frag # found chain 2erbA in template set T0287 86 :KVYRLLESE 2erbA 75 :KLHDSLPSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10556 # 2f6kA.86.138 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 86 :KVYRLLESE 2f6kA 139 :RVYQELDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10557 # 1zj8A.86.155 read from T0287.t2k.many.frag # found chain 1zj8A in template set T0287 86 :KVYRLLESE 1zj8A 145 :EIWRRLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10558 # 1z72A.86.85 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 86 :KVYRLLESE 1z72A 83 :KQLGFLEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10559 # 1jt6A.86.113 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 86 :KVYRLLESE 1jt6A 114 :EKMNKLENK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10560 # 1vraB.86.65 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 86 :KVYRLLESE 1vraB 262 :NFYKALQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10561 # 1zybA.86.138 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 86 :KVYRLLESE 1zybA 127 :LNYMNIVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10562 # 1k5nA.86.154 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 86 :KVYRLLESE 1k5nA 155 :QLRAYLEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10563 # 1sauA.86.88 read from T0287.t2k.many.frag # found chain 1sauA in training set T0287 86 :KVYRLLESE 1sauA 89 :YIYKLFPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10564 # 1zhxA.86.337 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 86 :KVYRLLESE 1zhxA 334 :KTKTELEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=10565 # 1usyA.86.148 read from T0287.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1usyA 149 :KVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=10566 # 1ib2A.86.160 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 86 :KVYRLLESE 1ib2A 988 :FIIDAFKGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10567 # 1m2oA.87.547 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 87 :VYRLLESET 1m2oA 548 :VIRWLDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10568 # 1hw1A.87.210 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 87 :VYRLLESET 1hw1A 211 :TVRRYGHES Number of specific fragments extracted= 1 number of extra gaps= 0 total=10569 # 1jx4A.87.212 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRLL 1jx4A 213 :LKGMI T0287 93 :SET 1jx4A 219 :EAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10571 # 2fkcA.87.148 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 87 :VYRLLES 2fkcA 149 :VLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10572 # 1vls.87.102 read from T0287.t2k.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1vls 137 :LIQFLDN T0287 95 :T 1vls 145 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=10574 # 1sz9A.87.92 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 87 :VYRLLESET 1sz9A 93 :TYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10575 # 1qmgA.87.300 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 87 :VYRLLESET 1qmgA 372 :LYNSLSEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10576 # 1h6gA.87.164 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 87 :VYRLLESET 1h6gA 541 :TAGAIRGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10577 # 1bf5A.87.52 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 87 :VYRLLESET 1bf5A 202 :MYLMLDNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10578 # 1e9rA.87.171 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 87 :VYRLLESET 1e9rA 242 :LFHWTTIAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10579 # 1k5nA.87.155 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 87 :VYRLLESET 1k5nA 156 :LRAYLEGEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10580 # 1z72A.87.86 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 87 :VYRLLESET 1z72A 84 :QLGFLEADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10581 # 1k8kG.87.93 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 87 :VYRLLESET 1k8kG 94 :AVQSLDKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10582 # 1w96A.87.530 read from T0287.t2k.many.frag # found chain 1w96A in training set T0287 87 :VYRLLESET 1w96A 543 :LIKLLETED Number of specific fragments extracted= 1 number of extra gaps= 0 total=10583 # 1dk8A.87.82 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 87 :VYRLLESET 1dk8A 193 :VSRQTKPAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10584 # 1rwhA.87.35 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 87 :VYRLLESET 1rwhA 36 :AITALNNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10585 # 2ccyA.87.84 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 87 :VYR 2ccyA 85 :GWK T0287 92 :ESET 2ccyA 90 :ATES Number of specific fragments extracted= 2 number of extra gaps= 1 total=10587 # 1usyA.87.149 read from T0287.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1usyA 150 :VLNLIDT T0287 95 :T 1usyA 158 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=10589 # 2audA.87.74 read from T0287.t2k.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 87 :VYRLL 2audA 76 :RYKLF T0287 93 :SET 2audA 82 :SPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10591 # 1jt6A.87.114 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 87 :VYRLLESET 1jt6A 115 :KMNKLENKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10592 # 1wwjA.87.64 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 87 :VYRLLESET 1wwjA 65 :LAKILPPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10593 # 1k55A.87.102 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 87 :VYRLLESET 1k55A 123 :IAREVGEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10594 # 1x6iA.87.45 read from T0287.t2k.many.frag # found chain 1x6iA in training set T0287 87 :VYRLLESET 1x6iA 43 :FIRLLECDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10595 # 1w2xA.87.695 read from T0287.t2k.many.frag # found chain 1w2xA in template set T0287 87 :VYRLLESET 1w2xA 2171 :VATWIEENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10596 # 2erbA.87.75 read from T0287.t2k.many.frag # found chain 2erbA in template set T0287 87 :VYRLLESET 2erbA 76 :LHDSLPSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10597 # 1q92A.87.48 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E92 (1q92A)R85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 87 :VY 1q92A 80 :QY T0287 91 :L 1q92A 84 :L T0287 93 :S 1q92A 86 :P T0287 95 :T 1q92A 88 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=10601 # 1zybA.87.139 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 87 :VYRLLESET 1zybA 128 :NYMNIVSNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10602 # 1vraB.87.66 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 87 :VYRLLESET 1vraB 263 :FYKALQLAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10603 # 1o82A.87.30 read from T0287.t2k.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRLL 1o82A 31 :ILTAV T0287 93 :SET 1o82A 37 :SGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=10605 # 1v9mA.87.71 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 87 :VYRLL 1v9mA 72 :LPRLV T0287 93 :SET 1v9mA 78 :GEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10607 # 1hw1A.88.211 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 88 :YRLLESETM 1hw1A 212 :VRRYGHESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10608 # 1m2oA.88.548 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 88 :YRLLESETM 1m2oA 549 :IRWLDRTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10609 # 1jx4A.88.213 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 88 :YRLLESETM 1jx4A 214 :KGMIGEAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10610 # 2fkcA.88.149 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 88 :YRLLES 2fkcA 150 :LNWLEK T0287 96 :M 2fkcA 158 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=10612 # 1k5nA.88.156 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 88 :YRLLESETM 1k5nA 157 :RAYLEGECV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10613 # 1h6gA.88.165 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 88 :YRLLESETM 1h6gA 542 :AGAIRGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10614 # 1vls.88.103 read from T0287.t2k.many.frag # found chain 1vls in template set Warning: unaligning (T0287)S93 (1vls)N143 because G (3-10) conformation "forbidden" or filtered. T0287 88 :YRLLE 1vls 138 :IQFLD T0287 94 :ETM 1vls 144 :GNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=10616 # 1wwjA.88.65 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 88 :YRLLESETM 1wwjA 66 :AKILPPPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10617 # 1bf5A.88.53 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 88 :YRLLESETM 1bf5A 203 :YLMLDNKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10618 # 1sz9A.88.93 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 88 :YRLLESETM 1sz9A 94 :YLLVDNTTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10619 # 1qmgA.88.301 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 88 :YRLLESETM 1qmgA 373 :YNSLSEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10620 # 1dk8A.88.83 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 88 :YRLLESETM 1dk8A 194 :SRQTKPATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10621 # 1z72A.88.87 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 88 :YRLLESETM 1z72A 85 :LGFLEADED Number of specific fragments extracted= 1 number of extra gaps= 0 total=10622 # 2ccyA.88.85 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 88 :YR 2ccyA 86 :WK T0287 92 :ESETM 2ccyA 90 :ATEST Number of specific fragments extracted= 2 number of extra gaps= 1 total=10624 # 1usyA.88.150 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 88 :YRLLESETM 1usyA 151 :LNLIDTKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10625 # 1e9rA.88.172 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 88 :YRLLESETM 1e9rA 243 :FHWTTIATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10626 # 1rwhA.88.36 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 88 :YRLLESETM 1rwhA 37 :ITALNNKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10627 # 1jt6A.88.115 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 88 :YRLLESETM 1jt6A 116 :MNKLENKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10628 # 1zybA.88.140 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 88 :YRLLESETM 1zybA 129 :YMNIVSNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10629 # 1w96A.88.531 read from T0287.t2k.many.frag # found chain 1w96A in training set T0287 88 :YRLLESETM 1w96A 544 :IKLLETEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10630 # 1v9mA.88.72 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRL 1v9mA 73 :PRL T0287 94 :ETM 1v9mA 79 :EAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10632 # 1q92A.88.49 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 88 :Y 1q92A 81 :Y T0287 91 :LES 1q92A 84 :LRP T0287 95 :TM 1q92A 88 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=10635 # 1vraB.88.67 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 88 :YRLLESETM 1vraB 264 :YKALQLACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10636 # 1w2xA.88.696 read from T0287.t2k.many.frag # found chain 1w2xA in template set T0287 88 :YRLLESETM 1w2xA 2172 :ATWIEENYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10637 # 2erbA.88.76 read from T0287.t2k.many.frag # found chain 2erbA in template set T0287 88 :YRLLESETM 2erbA 77 :HDSLPSSMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10638 # 1k8kG.88.94 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)E92 (1k8kG)D99 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1k8kG 95 :VQSL T0287 93 :SETM 1k8kG 100 :KNGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10640 # 1k55A.88.103 read from T0287.t2k.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1k55A 124 :AREV T0287 93 :SETM 1k55A 129 :EVRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=10642 # 1m0kA.88.183 read from T0287.t2k.many.frag # found chain 1m0kA in training set T0287 88 :YRLLESETM 1m0kA 171 :FKVLRNVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10643 # 1o82A.88.31 read from T0287.t2k.many.frag # found chain 1o82A in training set T0287 88 :YRLLESETM 1o82A 32 :LTAVGSGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10644 # 1c9kA.88.107 read from T0287.t2k.many.frag # found chain 1c9kA in template set T0287 88 :YRLLESETM 1c9kA 108 :ERAIDDEIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10645 # 1hw1A.89.212 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 89 :RLLESETME 1hw1A 213 :RRYGHESGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10646 # 1m2oA.89.549 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 89 :RLLESETME 1m2oA 550 :RWLDRTLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10647 # 1jx4A.89.214 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 89 :RLLESETME 1jx4A 215 :GMIGEAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10648 # 1k5nA.89.157 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 89 :RLLESETME 1k5nA 158 :AYLEGECVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10649 # 2fkcA.89.150 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 89 :RLLES 2fkcA 151 :NWLEK T0287 96 :ME 2fkcA 158 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10651 # 1wwjA.89.66 read from T0287.t2k.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1wwjA 67 :KIL T0287 93 :SETME 1wwjA 71 :PPVRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10653 # 1dk8A.89.84 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 89 :RLLESETME 1dk8A 195 :RQTKPATKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10654 # 1sz9A.89.94 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 89 :RLLESETME 1sz9A 95 :LLVDNTTRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10655 # 1h6gA.89.166 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 89 :RLLESETME 1h6gA 543 :GAIRGRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10656 # 1qmgA.89.302 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 89 :RLLESETME 1qmgA 374 :NSLSEEGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10657 # 1z72A.89.88 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 89 :RLLESETME 1z72A 86 :GFLEADEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10658 # 2ccyA.89.86 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 89 :R 2ccyA 87 :K T0287 92 :ESETME 2ccyA 90 :ATESTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10660 # 1bf5A.89.54 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 89 :RLLESETME 1bf5A 204 :LMLDNKRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10661 # 1jt6A.89.116 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 89 :RLLESETME 1jt6A 117 :NKLENKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=10662 # 1v9mA.89.73 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 89 :RL 1v9mA 74 :RL T0287 93 :SETME 1v9mA 78 :GEARE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10664 # 1vls.89.104 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 89 :RLLESETME 1vls 139 :QFLDNGNMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10665 # 1zybA.89.141 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 89 :RLLESETME 1zybA 130 :MNIVSNRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10666 # 1q92A.89.50 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TME 1q92A 88 :LSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=10668 # 1usyA.89.151 read from T0287.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)S93 (1usyA)T156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 89 :RLLE 1usyA 152 :NLID T0287 95 :TME 1usyA 158 :NLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10670 # 1e9rA.89.173 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLLES 1e9rA 244 :HWTTI T0287 95 :TME 1e9rA 250 :TFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10672 # 1uruA.89.99 read from T0287.t2k.many.frag # found chain 1uruA in template set T0287 89 :RLLESETME 1uruA 100 :GASESLWAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10673 # 1k55A.89.104 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 89 :RLLESETME 1k55A 125 :REVGEVRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10674 # 1vraB.89.68 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 89 :RLLESETME 1vraB 265 :KALQLACED Number of specific fragments extracted= 1 number of extra gaps= 0 total=10675 # 1o82A.89.32 read from T0287.t2k.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RLL 1o82A 33 :TAV T0287 93 :SETME 1o82A 37 :SGGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10677 # 1qwnA.89.138 read from T0287.t2k.many.frag # found chain 1qwnA in training set T0287 89 :RLLESETME 1qwnA 139 :HDLGENKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10678 # 1rwhA.89.37 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 89 :RLLESETME 1rwhA 38 :TALNNKAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10679 # 1zs3A.89.148 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 89 :RLLESETME 1zs3A 149 :VELYGYNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10680 # 1k8kG.89.95 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 89 :RLLESETME 1k8kG 96 :QSLDKNGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10681 # 1zhxA.89.340 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 89 :RLLESETME 1zhxA 337 :TELEETQRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10682 # 1qc7A.89.43 read from T0287.t2k.many.frag # found chain 1qc7A in template set T0287 89 :RLLESETME 1qc7A 278 :KNMSKRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10683 # 1hw1A.90.213 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 90 :LLESETMEL 1hw1A 214 :RYGHESGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10684 # 1k5nA.90.158 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 90 :LLESETMEL 1k5nA 159 :YLEGECVEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10685 # 1jx4A.90.215 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1jx4A 216 :MI T0287 93 :SETMEL 1jx4A 219 :EAKAKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10687 # 1dk8A.90.85 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 90 :LLESETMEL 1dk8A 196 :QTKPATKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10688 # 1wwjA.90.67 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 90 :LLESETMEL 1wwjA 68 :ILPPPVRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10689 # 1m2oA.90.550 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 90 :LLESETMEL 1m2oA 551 :WLDRTLIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10690 # 2fkcA.90.151 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 90 :LLES 2fkcA 152 :WLEK T0287 96 :MEL 2fkcA 158 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10692 # 1sz9A.90.95 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 90 :LLESETMEL 1sz9A 96 :LVDNTTRTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10693 # 1h6gA.90.167 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 90 :LLESETMEL 1h6gA 544 :AIRGRAARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10694 # 2czrA.90.11 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 90 :LLESETMEL 2czrA 4 :ELSPGTKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10695 # 1q92A.90.51 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TMEL 1q92A 88 :LSEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=10697 # 2ccyA.90.87 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMEL 2ccyA 90 :ATESTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10698 # 1z72A.90.89 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 90 :LLESETMEL 1z72A 87 :FLEADEDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10699 # 1g61A.90.74 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 90 :LLESETMEL 1g61A 2075 :IVEDEELDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10700 # 1bf5A.90.55 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 90 :LLESETMEL 1bf5A 205 :MLDNKRKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10701 # 1qmgA.90.303 read from T0287.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LL 1qmgA 375 :SL T0287 93 :SETMEL 1qmgA 378 :EEGKKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10703 # 1v9mA.90.74 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :L 1v9mA 75 :L T0287 94 :ETMEL 1v9mA 79 :EAREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10705 # 1zs3A.90.149 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 90 :LLESETMEL 1zs3A 150 :ELYGYNLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10706 # 1jt6A.90.117 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 90 :LLESETMEL 1jt6A 118 :KLENKYIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10707 # 1uruA.90.100 read from T0287.t2k.many.frag # found chain 1uruA in template set T0287 90 :LLESETMEL 1uruA 101 :ASESLWADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10708 # 1kaeA.90.78 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 90 :LLESETMEL 1kaeA 79 :RLSDELKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10709 # 1zybA.90.142 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 90 :LLESETMEL 1zybA 131 :NIVSNRAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10710 # 1e9rA.90.174 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 90 :LLESETMEL 1e9rA 245 :WTTIATFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10711 # 1k8kG.90.96 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 90 :LLESETMEL 1k8kG 97 :SLDKNGVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10712 # 1k55A.90.105 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 90 :LLESETMEL 1k55A 126 :EVGEVRMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10713 # 1lc5A.90.271 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 90 :LLESETMEL 1lc5A 272 :WLREEGARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10714 # 1o82A.90.33 read from T0287.t2k.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1o82A 34 :AV T0287 93 :SETMEL 1o82A 37 :SGGLSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10716 # 1zz1A.90.74 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 90 :LLESETMEL 1zz1A 75 :AHSAAHLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10717 # 1q6uA.90.97 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 90 :LLESETMEL 1q6uA 98 :DNEAKGKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10718 # 1fi4A.90.355 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)E92 (1fi4A)T338 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LL 1fi4A 336 :KF T0287 93 :SETMEL 1fi4A 339 :TEQLEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10720 # 1hw1A.91.214 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 91 :LESETMELL 1hw1A 215 :YGHESGEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10721 # 1k5nA.91.159 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 91 :LESETMELL 1k5nA 160 :LEGECVEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10722 # 1jx4A.91.216 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 91 :L 1jx4A 217 :I T0287 93 :SETMELL 1jx4A 219 :EAKAKYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10724 # 1dk8A.91.86 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 91 :LESETMELL 1dk8A 197 :TKPATKSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10725 # 1wwjA.91.68 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 91 :LESETMELL 1wwjA 69 :LPPPVRKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=10726 # 1q92A.91.52 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TMELL 1q92A 88 :LSEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10728 # 2czrA.91.12 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 91 :LESETMELL 2czrA 5 :LSPGTKKVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10729 # 2fkcA.91.152 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 91 :LES 2fkcA 153 :LEK T0287 96 :MELL 2fkcA 158 :VLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10731 # 1m2oA.91.551 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 91 :LESETMELL 1m2oA 552 :LDRTLIKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10732 # 1sz9A.91.96 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 91 :LESETMELL 1sz9A 97 :VDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10733 # 1h6gA.91.168 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 91 :LESETMELL 1h6gA 545 :IRGRAARVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10734 # 2ccyA.91.88 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMELL 2ccyA 90 :ATESTKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10735 # 1g61A.91.75 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2076 :VEDEELDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10736 # 1zz1A.91.75 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 91 :LESETMELL 1zz1A 76 :HSAAHLENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10737 # 1z72A.91.90 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 91 :LESETMELL 1z72A 88 :LEADEDGYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10738 # 1fi4A.91.356 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 91 :LESETMELL 1fi4A 337 :FTTEQLEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10739 # 1lc5A.91.272 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 91 :LESETMELL 1lc5A 273 :LREEGARFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10740 # 1oohA.91.78 read from T0287.t2k.many.frag # found chain 1oohA in training set T0287 91 :LESETMELL 1oohA 77 :VPPEMMEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10741 # 1zs3A.91.150 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 91 :LESETMELL 1zs3A 151 :LYGYNLQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10742 # 1v9mA.91.75 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 91 :LE 1v9mA 76 :VT T0287 94 :ETMELL 1v9mA 79 :EAREAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10744 # 1jt6A.91.118 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 91 :LESETMELL 1jt6A 119 :LENKYIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10745 # 1kaeA.91.79 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 91 :LESETMELL 1kaeA 80 :LSDELKQAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10746 # 1l5aA.91.214 read from T0287.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)E92 (1l5aA)N216 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1l5aA 215 :L T0287 93 :SETMELL 1l5aA 217 :SQLNHLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10748 # 1qmgA.91.304 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 91 :LESETMELL 1qmgA 376 :LSEEGKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10749 # 1uruA.91.101 read from T0287.t2k.many.frag # found chain 1uruA in template set T0287 91 :LESETMELL 1uruA 102 :SESLWADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10750 # 1ekqA.91.145 read from T0287.t2k.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELL 1ekqA 148 :GDIIRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10751 # 1fobA.91.109 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 91 :LESETMELL 1fobA 110 :LYNYTLEVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10752 # 1bf5A.91.56 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 91 :LESETMELL 1bf5A 206 :LDNKRKEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10753 # 1g61A.91.166 read from T0287.t2k.many.frag # found chain 1g61A in training set Warning: unaligning (T0287)E92 (1g61A)E2168 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1g61A 2167 :V T0287 93 :SETMELL 1g61A 2169 :DDELEFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10755 # 1za0A.91.206 read from T0287.t2k.many.frag # found chain 1za0A in template set Warning: unaligning (T0287)L91 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)R208 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)R208 T0287 93 :SETMELL 1za0A 209 :DETIAAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10756 # 1hw1A.92.215 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 92 :ESETMELLH 1hw1A 216 :GHESGEIWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10757 # 1k5nA.92.160 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 92 :ESETMELLH 1k5nA 161 :EGECVEWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10758 # 1jx4A.92.217 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 92 :ESETMELLH 1jx4A 218 :GEAKAKYLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10759 # 1q92A.92.53 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 92 :ESETMELLH 1q92A 85 :RPGLSEKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10760 # 1wwjA.92.69 read from T0287.t2k.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1wwjA 71 :PPVRKIIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=10761 # 1dk8A.92.87 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 92 :ESETMELLH 1dk8A 198 :KPATKSFIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10762 # 2czrA.92.13 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 92 :ESETMELLH 2czrA 6 :SPGTKKVYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10763 # 2fkcA.92.153 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 92 :ES 2fkcA 154 :EK T0287 96 :MELLH 2fkcA 158 :VLVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10765 # 1zz1A.92.76 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 92 :ESETMELLH 1zz1A 77 :SAAHLENMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10766 # 1h6gA.92.169 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 92 :ESETMELLH 1h6gA 546 :RGRAARVIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10767 # 1m2oA.92.552 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 92 :ESETMELLH 1m2oA 553 :DRTLIKLCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10768 # 2ccyA.92.89 read from T0287.t2k.many.frag # found chain 2ccyA in training set T0287 92 :ESETMELLH 2ccyA 90 :ATESTKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10769 # 1fi4A.92.357 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 92 :ESETMELLH 1fi4A 338 :TTEQLEAFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10770 # 1g61A.92.76 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 92 :ESETMELLH 1g61A 2077 :EDEELDRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10771 # 1y1pA.92.107 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 92 :ESETMELLH 1y1pA 109 :IGGTLNALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10772 # 1sz9A.92.97 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 92 :ESETMELLH 1sz9A 98 :DNTTRTKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10773 # 1zs3A.92.151 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 92 :ESETMELLH 1zs3A 152 :YGYNLQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10774 # 1lc5A.92.273 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 92 :ESETMELLH 1lc5A 274 :REEGARFYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10775 # 1uhvA.92.31 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 92 :ESETMELLH 1uhvA 32 :QKEYIETLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10776 # 1l5aA.92.215 read from T0287.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)E92 (1l5aA)N216 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1l5aA 217 :SQLNHLLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10777 # 1a4iA.92.77 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 92 :ESETMELLH 1a4iA 78 :ESEVMKYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10778 # 1fobA.92.110 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 92 :ESETMELLH 1fobA 111 :YNYTLEVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10779 # 1e9rA.92.176 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 92 :ESETMELLH 1e9rA 247 :TIATFDDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10780 # 1ekqA.92.146 read from T0287.t2k.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELLH 1ekqA 148 :GDIIRLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10781 # 1oohA.92.79 read from T0287.t2k.many.frag # found chain 1oohA in training set T0287 92 :ESETMELLH 1oohA 78 :PPEMMEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10782 # 1q6uA.92.99 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 92 :ESETMELLH 1q6uA 100 :EAKGKEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10783 # 3nul.92.41 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 92 :ESETMELLH 3nul 43 :KPQEIDGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10784 # 1qtwA.92.44 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 92 :ESETMELLH 1qtwA 45 :TTQTIDEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10785 # 1jftA.92.27 read from T0287.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0287)E92 (1jftA)A29 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1jftA 30 :EETRNAVW Number of specific fragments extracted= 1 number of extra gaps= 1 total=10786 # 1gsoA.92.305 read from T0287.t2k.many.frag # found chain 1gsoA in training set T0287 92 :ESETMELLH 1gsoA 304 :KSDLVELCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10787 # 1hw1A.93.216 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 93 :SETMELLHA 1hw1A 217 :HESGEIWHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10788 # 1k5nA.93.161 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 93 :SETMELLHA 1k5nA 162 :GECVEWLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10789 # 1jx4A.93.218 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 93 :SETMELLHA 1jx4A 219 :EAKAKYLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10790 # 1q92A.93.54 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 93 :SETMELLHA 1q92A 86 :PGLSEKAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10791 # 2fkcA.93.154 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 93 :S 2fkcA 155 :K T0287 96 :MELLHA 2fkcA 158 :VLVLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10793 # 2czrA.93.14 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 93 :SETMELLHA 2czrA 7 :PGTKKVYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10794 # 1y1pA.93.108 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 93 :SETMELLHA 1y1pA 110 :GGTLNALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10795 # 1e9rA.93.177 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :S 1e9rA 248 :I T0287 95 :TMELLHA 1e9rA 250 :TFDDLRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=10797 # 1fi4A.93.358 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 93 :SETMELLHA 1fi4A 339 :TEQLEAFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10798 # 1zz1A.93.77 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 93 :SETMELLHA 1zz1A 78 :AAHLENMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10799 # 1h6gA.93.170 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 93 :SETMELLHA 1h6gA 547 :GRAARVIHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10800 # 1wwjA.93.70 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 93 :SETMELLHA 1wwjA 71 :PPVRKIIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10801 # 1dk8A.93.88 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 93 :SETMELLHA 1dk8A 199 :PATKSFIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10802 # 2ccyA.93.90 read from T0287.t2k.many.frag # found chain 2ccyA in training set T0287 93 :SETMELLHA 2ccyA 91 :TESTKLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10803 # 1lc5A.93.274 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 93 :SETMELLHA 1lc5A 275 :EEGARFYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10804 # 1m2oA.93.553 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 93 :SETMELLHA 1m2oA 554 :RTLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10805 # 1zs3A.93.152 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 93 :SETMELLHA 1zs3A 153 :GYNLQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10806 # 1g61A.93.77 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 93 :SETMELLHA 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10807 # 1uhvA.93.32 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 93 :SETMELLHA 1uhvA 33 :KEYIETLKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10808 # 1g8mA.93.126 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 93 :SETMELLHA 1g8mA 127 :IGGVALLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10809 # 1uq5A.93.204 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 93 :SETMELLHA 1uq5A 209 :NSWGRLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10810 # 1qtwA.93.45 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 93 :SETMELLHA 1qtwA 46 :TQTIDEFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10811 # 1a4iA.93.78 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 93 :SETMELLHA 1a4iA 79 :SEVMKYITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10812 # 1jftA.93.28 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 93 :SETMELLHA 1jftA 30 :EETRNAVWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10813 # 1l5aA.93.216 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 93 :SETMELLHA 1l5aA 217 :SQLNHLLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10814 # 1fobA.93.111 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 93 :SETMELLHA 1fobA 112 :NYTLEVCNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10815 # 1q6uA.93.100 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 93 :SETMELLHA 1q6uA 101 :AKGKEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10816 # 1oohA.93.80 read from T0287.t2k.many.frag # found chain 1oohA in training set T0287 93 :SETMELLHA 1oohA 79 :PEMMEMSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10817 # 1wgzA.93.189 read from T0287.t2k.many.frag # found chain 1wgzA in template set T0287 93 :SETMELLHA 1wgzA 190 :EGLKGLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10818 # 1lycA.93.95 read from T0287.t2k.many.frag # found chain 1lycA in training set T0287 93 :SETMELLHA 1lycA 96 :TDTVEALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10819 # 1hw1A.94.217 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 94 :ETMELLHAI 1hw1A 218 :ESGEIWHRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10820 # 1k5nA.94.162 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 94 :ETMELLHAI 1k5nA 163 :ECVEWLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10821 # 1q92A.94.55 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 94 :ETMELLHAI 1q92A 87 :GLSEKAISI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10822 # 1y1pA.94.109 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 94 :ETMELLHAI 1y1pA 111 :GTLNALRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10823 # 1jx4A.94.219 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 94 :ETMELLHAI 1jx4A 220 :AKAKYLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10824 # 1zz1A.94.78 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 94 :ETMELLHAI 1zz1A 79 :AHLENMKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10825 # 2fkcA.94.155 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAI 2fkcA 158 :VLVLTDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10826 # 2czrA.94.15 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 94 :ETMELLHAI 2czrA 8 :GTKKVYTQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10827 # 1uhvA.94.33 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 94 :ETMELLHAI 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10828 # 1h6gA.94.171 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 94 :ETMELLHAI 1h6gA 548 :RAARVIHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10829 # 1fi4A.94.359 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 94 :ETMELLHAI 1fi4A 340 :EQLEAFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10830 # 1g8mA.94.127 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 94 :ETMELLHAI 1g8mA 128 :GGVALLRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10831 # 1e9rA.94.178 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 94 :ETMELLHAI 1e9rA 249 :ATFDDLRGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10832 # 1zs3A.94.153 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 94 :ETMELLHAI 1zs3A 154 :YNLQVIRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10833 # 1lc5A.94.275 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 94 :ETMELLHAI 1lc5A 276 :EGARFYQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10834 # 1wwjA.94.71 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 94 :ETMELLHAI 1wwjA 72 :PVRKIIGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10835 # 1qtwA.94.46 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 94 :ETMELLHAI 1qtwA 47 :QTIDEFKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10836 # 1uq5A.94.205 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 94 :ETMELLHAI 1uq5A 210 :SWGRLSTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10837 # 1lniA.94.13 read from T0287.t2k.many.frag # found chain 1lniA in training set T0287 94 :ETMELLHAI 1lniA 14 :EATDTLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10838 # 1lycA.94.96 read from T0287.t2k.many.frag # found chain 1lycA in training set T0287 94 :ETMELLHAI 1lycA 97 :DTVEALRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10839 # 1fobA.94.112 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 94 :ETMELLHAI 1fobA 113 :YTLEVCNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10840 # 1q6uA.94.101 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 94 :ETMELLHAI 1q6uA 102 :KGKEYREKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10841 # 1g61A.94.78 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 94 :ETMELLHAI 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10842 # 1a4iA.94.79 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 94 :ETMELLHAI 1a4iA 80 :EVMKYITSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10843 # 1m2oA.94.554 read from T0287.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0287)I102 (1m2oA)Y563 because G (3-10) conformation "forbidden" or filtered. T0287 94 :ETMELLHA 1m2oA 555 :TLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10844 # 1wgzA.94.190 read from T0287.t2k.many.frag # found chain 1wgzA in template set T0287 94 :ETMELLHAI 1wgzA 191 :GLKGLLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10845 # 1jftA.94.29 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 94 :ETMELLHAI 1jftA 31 :ETRNAVWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10846 # 1l5aA.94.217 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 94 :ETMELLHAI 1l5aA 218 :QLNHLLLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10847 # 1vpbA.94.139 read from T0287.t2k.many.frag # found chain 1vpbA in training set T0287 94 :ETMELLHAI 1vpbA 128 :DKIEMAKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10848 # 2ccyA.94.91 read from T0287.t2k.many.frag # found chain 2ccyA in training set T0287 94 :ETMELLHAI 2ccyA 92 :ESTKLAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10849 # 1hw1A.95.218 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 95 :TMELLHAIA 1hw1A 219 :SGEIWHRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10850 # 1k5nA.95.163 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 95 :TMELLHAIA 1k5nA 164 :CVEWLRRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10851 # 1y1pA.95.110 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 95 :TMELLHAIA 1y1pA 112 :TLNALRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10852 # 1q92A.95.56 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 95 :TMELLHAIA 1q92A 88 :LSEKAISIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10853 # 1g8mA.95.128 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 95 :TMELLHAIA 1g8mA 129 :GVALLRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10854 # 1uq5A.95.206 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 95 :TMELLHAIA 1uq5A 211 :WGRLSTAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10855 # 1h6gA.95.172 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 95 :TMELLHAIA 1h6gA 549 :AARVIHVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10856 # 1zs3A.95.154 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 95 :TMELLHAIA 1zs3A 155 :NLQVIRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10857 # 2fkcA.95.156 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAIA 2fkcA 158 :VLVLTDIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10858 # 1uhvA.95.34 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 95 :TMELLHAIA 1uhvA 35 :YIETLKYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10859 # 1lc5A.95.276 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 95 :TMELLHAIA 1lc5A 277 :GARFYQALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10860 # 1zz1A.95.79 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 95 :TMELLHAIA 1zz1A 80 :HLENMKRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10861 # 1fi4A.95.360 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 95 :TMELLHAIA 1fi4A 341 :QLEAFNHQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10862 # 2czrA.95.16 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 95 :TMELLHAIA 2czrA 9 :TKKVYTQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10863 # 1lniA.95.14 read from T0287.t2k.many.frag # found chain 1lniA in training set T0287 95 :TMELLHAIA 1lniA 15 :ATDTLNLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10864 # 1jx4A.95.220 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 95 :TMELLHAIA 1jx4A 221 :KAKYLISLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10865 # 1q6uA.95.102 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 95 :TMELLHAIA 1q6uA 103 :GKEYREKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10866 # 1qtwA.95.47 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 95 :TMELLHAIA 1qtwA 48 :TIDEFKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10867 # 1q79A.95.397 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 95 :TMELLHAIA 1q79A 398 :IRILVGSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10868 # 1vpbA.95.140 read from T0287.t2k.many.frag # found chain 1vpbA in training set T0287 95 :TMELLHAIA 1vpbA 129 :KIEMAKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10869 # 1wgzA.95.191 read from T0287.t2k.many.frag # found chain 1wgzA in template set T0287 95 :TMELLHAIA 1wgzA 192 :LKGLLDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10870 # 1lycA.95.97 read from T0287.t2k.many.frag # found chain 1lycA in training set T0287 95 :TMELLHAIA 1lycA 98 :TVEALRAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10871 # 1fobA.95.113 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 95 :TMELLHAIA 1fobA 114 :TLEVCNTFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10872 # 1wa5C.95.311 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 95 :TMELLHAIA 1wa5C 312 :SLSFLTAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10873 # 1jftA.95.30 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 95 :TMELLHAIA 1jftA 32 :TRNAVWAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10874 # 1gxqA.95.35 read from T0287.t2k.many.frag # found chain 1gxqA in template set T0287 95 :TMELLHAIA 1gxqA 159 :EFKLLHFFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10875 # 1e9rA.95.179 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 95 :TMELLHAIA 1e9rA 250 :TFDDLRGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10876 # 3nul.95.44 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 95 :TMELLHAIA 3nul 46 :EIDGIKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10877 # 1m2oA.95.555 read from T0287.t2k.many.frag # found chain 1m2oA in template set Warning: unaligning (T0287)I102 (1m2oA)Y563 because G (3-10) conformation "forbidden" or filtered. T0287 95 :TMELLHA 1m2oA 556 :LIKLCQK T0287 103 :A 1m2oA 564 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=10879 # 1a4iA.95.80 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 95 :TMELLHAIA 1a4iA 81 :VMKYITSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10880 # 1y1pA.96.111 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 96 :MELLHAIAE 1y1pA 113 :LNALRAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10881 # 1hw1A.96.219 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 96 :MELLHAIAE 1hw1A 220 :GEIWHRMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10882 # 1k5nA.96.164 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 96 :MELLHAIAE 1k5nA 165 :VEWLRRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10883 # 1q92A.96.57 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 96 :MELLHAIAE 1q92A 89 :SEKAISIWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10884 # 1g8mA.96.129 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 96 :MELLHAIAE 1g8mA 130 :VALLRAAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10885 # 1zz1A.96.80 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 96 :MELLHAIAE 1zz1A 81 :LENMKRVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10886 # 1uhvA.96.35 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 96 :MELLHAIAE 1uhvA 36 :IETLKYVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10887 # 1zs3A.96.155 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 96 :MELLHAIAE 1zs3A 156 :LQVIRNLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10888 # 1uq5A.96.207 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 96 :MELLHAIAE 1uq5A 212 :GRLSTAIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10889 # 1lc5A.96.277 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 96 :MELLHAIAE 1lc5A 278 :ARFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10890 # 1fi4A.96.361 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 96 :MELLHAIAE 1fi4A 342 :LEAFNHQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10891 # 1q6uA.96.103 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 96 :MELLHAIAE 1q6uA 104 :KEYREKFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10892 # 1qtwA.96.48 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 96 :MELLHAIAE 1qtwA 49 :IDEFKAACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10893 # 1wa5C.96.312 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 96 :MELLHAIAE 1wa5C 313 :LSFLTAVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10894 # 2fkcA.96.157 read from T0287.t2k.many.frag # found chain 2fkcA in template set T0287 96 :MELLHAIAE 2fkcA 158 :VLVLTDILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10895 # 3nul.96.45 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 96 :MELLHAIAE 3nul 47 :IDGIKKDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10896 # 1h6gA.96.173 read from T0287.t2k.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)H100 (1h6gA)H554 because H (helix) conformation "forbidden" or filtered. T0287 96 :MELL 1h6gA 550 :ARVI T0287 101 :AIAE 1h6gA 555 :VVTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10898 # 1lycA.96.98 read from T0287.t2k.many.frag # found chain 1lycA in training set T0287 96 :MELLHAIAE 1lycA 99 :VEALRAVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10899 # 1q79A.96.398 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 96 :MELLHAIAE 1q79A 399 :RILVGSLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10900 # 1jx4A.96.221 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 96 :MELLHAIAE 1jx4A 222 :AKYLISLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10901 # 1vpbA.96.141 read from T0287.t2k.many.frag # found chain 1vpbA in training set T0287 96 :MELLHAIAE 1vpbA 130 :IEMAKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10902 # 1lniA.96.15 read from T0287.t2k.many.frag # found chain 1lniA in training set T0287 96 :MELLHAIAE 1lniA 16 :TDTLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10903 # 1jftA.96.31 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 96 :MELLHAIAE 1jftA 33 :RNAVWAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10904 # 1zl0A.96.68 read from T0287.t2k.many.frag # found chain 1zl0A in template set T0287 96 :MELLHAIAE 1zl0A 67 :LEDLHNAFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10905 # 1gxqA.96.36 read from T0287.t2k.many.frag # found chain 1gxqA in template set T0287 96 :MELLHAIAE 1gxqA 160 :FKLLHFFMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10906 # 2czrA.96.17 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 96 :MELLHAIAE 2czrA 10 :KKVYTQVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10907 # 1a4iA.96.81 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 96 :MELLHAIAE 1a4iA 82 :MKYITSLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10908 # 2bptA.96.681 read from T0287.t2k.many.frag # found chain 2bptA in template set T0287 96 :MELLHAIAE 2bptA 682 :MNVLAQMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10909 # 1wgzA.96.192 read from T0287.t2k.many.frag # found chain 1wgzA in template set T0287 96 :MELLHAIAE 1wgzA 193 :KGLLDRILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10910 # 1fobA.96.114 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 96 :MELLHAIAE 1fobA 115 :LEVCNTFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10911 # 1y1pA.97.112 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 97 :ELLHAIAEN 1y1pA 114 :NALRAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10912 # 1q92A.97.58 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 97 :ELLHAIAEN 1q92A 90 :EKAISIWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=10913 # 1k5nA.97.165 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 97 :ELLHAIAEN 1k5nA 166 :EWLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10914 # 1hw1A.97.220 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 97 :ELLHAIAEN 1hw1A 221 :EIWHRMQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10915 # 1uhvA.97.36 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 97 :ELLHAIAEN 1uhvA 37 :ETLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10916 # 1lc5A.97.278 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 97 :ELLHAIAEN 1lc5A 279 :RFYQALCQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10917 # 1zz1A.97.81 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 97 :ELLHAIAEN 1zz1A 82 :ENMKRVSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10918 # 1q79A.97.399 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 97 :ELLHAIAEN 1q79A 400 :ILVGSLEKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10919 # 1g8mA.97.130 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 97 :ELLHAIAEN 1g8mA 131 :ALLRAAAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10920 # 1uq5A.97.208 read from T0287.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0287)N105 (1uq5A)S221 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1uq5A 213 :RLSTAIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=10921 # 1zs3A.97.156 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 97 :ELLHAIAEN 1zs3A 157 :QVIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10922 # 2czrA.97.18 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 97 :ELLHAIAEN 2czrA 11 :KVYTQVRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10923 # 1wa5C.97.313 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 97 :ELLHAIAEN 1wa5C 314 :SFLTAVTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10924 # 1q6uA.97.104 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 97 :ELLHAIAEN 1q6uA 105 :EYREKFAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10925 # 1n5uA.97.258 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1n5uA 259 :DLAKYICE Number of specific fragments extracted= 1 number of extra gaps= 1 total=10926 # 1lniA.97.16 read from T0287.t2k.many.frag # found chain 1lniA in training set T0287 97 :ELLHAIAEN 1lniA 17 :DTLNLIASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10927 # 3nul.97.46 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 97 :ELLHAIAEN 3nul 48 :DGIKKDFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10928 # 1zl0A.97.69 read from T0287.t2k.many.frag # found chain 1zl0A in template set T0287 97 :ELLHAIAEN 1zl0A 68 :EDLHNAFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10929 # 1h6gA.97.174 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 97 :ELLHAIAEN 1h6gA 551 :RVIHVVTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10930 # 1fi4A.97.362 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 97 :ELLHAIAEN 1fi4A 343 :EAFNHQFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=10931 # 1g5aA.97.80 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 97 :ELLHAIAEN 1g5aA 81 :DIDIARENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10932 # 1gxqA.97.37 read from T0287.t2k.many.frag # found chain 1gxqA in template set T0287 97 :ELLHAIAEN 1gxqA 161 :KLLHFFMTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10933 # 1vpbA.97.142 read from T0287.t2k.many.frag # found chain 1vpbA in training set T0287 97 :ELLHAIAEN 1vpbA 131 :EMAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10934 # 1qtwA.97.49 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 97 :ELLHAIAEN 1qtwA 50 :DEFKAACEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10935 # 1w79A.97.6 read from T0287.t2k.many.frag # found chain 1w79A in template set T0287 97 :ELLHAIAEN 1w79A 7 :EDIDAILED Number of specific fragments extracted= 1 number of extra gaps= 0 total=10936 # 1a4iA.97.82 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 97 :ELLHAIAEN 1a4iA 83 :KYITSLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=10937 # 1t1vA.97.47 read from T0287.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N105 (1t1vA)N56 because D (zeta) conformation "forbidden" or filtered. T0287 97 :ELLHAIA 1t1vA 48 :DEMRTLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10938 # 1kpsB.97.140 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 97 :ELLHAIAEN 1kpsB 559 :PLLLAFVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10939 # 1jftA.97.32 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 97 :ELLHAIAEN 1jftA 34 :NAVWAAIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10940 # 1colA.97.60 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 97 :ELL 1colA 61 :ASL T0287 102 :IAEN 1colA 66 :ITAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=10942 # 1y1pA.98.113 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 98 :LLHAIAENP 1y1pA 115 :ALRAAAATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10943 # 1q92A.98.59 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 98 :LLHAIAENP 1q92A 91 :KAISIWESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10944 # 1n5uA.98.259 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 98 :LLHAIAENP 1n5uA 260 :LAKYICENQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10945 # 1k5nA.98.166 read from T0287.t2k.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1k5nA 167 :WLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=10946 # 1uhvA.98.37 read from T0287.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1uhvA 38 :TLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=10947 # 1zz1A.98.82 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 98 :LLHAIAENP 1zz1A 83 :NMKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10948 # 3nul.98.47 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 98 :LLHAIAENP 3nul 49 :GIKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10949 # 1g5aA.98.81 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 98 :LLHAIAENP 1g5aA 82 :IDIARENNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10950 # 1lc5A.98.279 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 98 :LLHAIAENP 1lc5A 280 :FYQALCQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10951 # 1t1vA.98.48 read from T0287.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 98 :LLHAIA 1t1vA 49 :EMRTLA T0287 105 :NP 1t1vA 56 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=10953 # 1kpsB.98.141 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 98 :LLHAIAENP 1kpsB 560 :LLLAFVTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10954 # 1colA.98.61 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 98 :LL 1colA 62 :SL T0287 102 :IAENP 1colA 66 :ITANP Number of specific fragments extracted= 2 number of extra gaps= 1 total=10956 # 1q79A.98.400 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 98 :LLHAIAENP 1q79A 401 :LVGSLEKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10957 # 1g8mA.98.131 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 98 :LLHAIAENP 1g8mA 132 :LLRAAAKNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10958 # 1hw1A.98.221 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 because last residue in template chain is (1hw1A)L230 T0287 98 :LL 1hw1A 222 :IW T0287 101 :AIAEN 1hw1A 225 :RMQKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=10960 # 1a4iA.98.83 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 98 :LLHAIAENP 1a4iA 84 :YITSLNEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10961 # 1wa5C.98.314 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 98 :LLHAIAENP 1wa5C 315 :FLTAVTRIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10962 # 1f74A.98.149 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 98 :LLHAIAENP 1f74A 150 :QFGELYKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10963 # 1q6uA.98.105 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 98 :LLHAIAENP 1q6uA 106 :YREKFAKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10964 # 1zs3A.98.157 read from T0287.t2k.many.frag # found chain 1zs3A in template set Warning: unaligning (T0287)P106 (1zs3A)L166 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1zs3A 158 :VIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=10965 # 1lniA.98.17 read from T0287.t2k.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)N105 (1lniA)D25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 T0287 98 :LLHAIAE 1lniA 18 :TLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=10966 # 1uq5A.98.209 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 98 :LLHAIAENP 1uq5A 214 :LSTAIQESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10967 # 1zl0A.98.70 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)H100 (1zl0A)H71 because H (helix) conformation "forbidden" or filtered. T0287 98 :LL 1zl0A 69 :DL T0287 101 :AIAENP 1zl0A 72 :NAFDMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=10969 # 1fi4A.98.363 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 98 :LLHAIAENP 1fi4A 344 :AFNHQFESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10970 # 1w79A.98.7 read from T0287.t2k.many.frag # found chain 1w79A in template set T0287 98 :LLHAIAENP 1w79A 8 :DIDAILEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10971 # 2czrA.98.19 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 98 :LLHAIAENP 2czrA 12 :VYTQVRYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10972 # 1h80A.98.44 read from T0287.t2k.many.frag # found chain 1h80A in training set T0287 98 :LLHAIAENP 1h80A 72 :AINAISRKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10973 # 1gxqA.98.38 read from T0287.t2k.many.frag # found chain 1gxqA in template set T0287 98 :LLHAIAENP 1gxqA 162 :LLHFFMTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10974 # 1no7A.98.162 read from T0287.t2k.many.frag # found chain 1no7A in template set T0287 98 :LLHAIAENP 1no7A 613 :AVRGAFDDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10975 # 1vpbA.98.143 read from T0287.t2k.many.frag # found chain 1vpbA in training set Warning: unaligning (T0287)P106 (1vpbA)A140 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1vpbA 132 :MAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=10976 # 1q92A.99.60 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 99 :LHAIAENPN 1q92A 92 :AISIWESKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10977 # 1y1pA.99.114 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 99 :LHAIAENPN 1y1pA 116 :LRAAAATPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10978 # 1n5uA.99.260 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 99 :LHAIAENPN 1n5uA 261 :AKYICENQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10979 # 1g5aA.99.82 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 99 :LHAIAENPN 1g5aA 83 :DIARENNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10980 # 3nul.99.48 read from T0287.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 3nul 50 :IKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=10981 # 1colA.99.62 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 99 :L 1colA 63 :L T0287 102 :IAENPN 1colA 66 :ITANPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10983 # 1f74A.99.150 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 99 :LHAIAENPN 1f74A 151 :FGELYKNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10984 # 1lc5A.99.280 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 99 :LHAIAENPN 1lc5A 281 :YQALCQLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10985 # 1zz1A.99.83 read from T0287.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 T0287 99 :LHAIAENP 1zz1A 84 :MKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=10986 # 1t1vA.99.49 read from T0287.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIA 1t1vA 50 :MRTLA T0287 105 :NPN 1t1vA 56 :NPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10988 # 1kpsB.99.142 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 99 :LHAIAENPN 1kpsB 561 :LLAFVTKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10989 # 1uhvA.99.38 read from T0287.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1uhvA 39 :LKYVKEN T0287 107 :N 1uhvA 47 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=10991 # 1k5nA.99.167 read from T0287.t2k.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1k5nA 168 :LRRYLEN T0287 107 :N 1k5nA 176 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=10993 # 1h80A.99.45 read from T0287.t2k.many.frag # found chain 1h80A in training set T0287 99 :LHAIAENPN 1h80A 73 :INAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10994 # 1a4iA.99.84 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 99 :LHAIAENPN 1a4iA 85 :ITSLNEDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=10995 # 1q79A.99.401 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 99 :LHAIAENPN 1q79A 402 :VGSLEKNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10996 # 1g8mA.99.132 read from T0287.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0287)N105 (1g8mA)N139 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1g8mA 133 :LRAAAK T0287 106 :PN 1g8mA 140 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10998 # 1q6uA.99.106 read from T0287.t2k.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N105 (1q6uA)E113 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1q6uA 107 :REKFAK T0287 106 :PN 1q6uA 114 :KG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11000 # 1gvjA.99.79 read from T0287.t2k.many.frag # found chain 1gvjA in training set T0287 99 :LHAIAENPN 1gvjA 375 :WGKRKNKPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11001 # 2ffsA.99.28 read from T0287.t2k.many.frag # found chain 2ffsA in template set T0287 99 :LHAIAENPN 2ffsA 29 :LVCRAREPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11002 # 1fi4A.99.364 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 99 :LHAIAENPN 1fi4A 345 :FNHQFESSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11003 # 1wa5C.99.315 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 99 :LHAIAENPN 1wa5C 316 :LTAVTRIPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11004 # 1zl0A.99.71 read from T0287.t2k.many.frag # found chain 1zl0A in template set T0287 99 :LHAIAENPN 1zl0A 70 :LHNAFDMPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11005 # 1rloA.99.92 read from T0287.t2k.many.frag # found chain 1rloA in template set T0287 99 :LHAIAENPN 1rloA 93 :IGELLKDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11006 # 1z5zA.99.155 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 99 :LHAIAENPN 1z5zA 791 :ISKFQNNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11007 # 1ye8A.99.121 read from T0287.t2k.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1ye8A)N130 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1ye8A 122 :VRQIMH T0287 106 :P 1ye8A 129 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=11009 # 1vjhA.99.20 read from T0287.t2k.many.frag # found chain 1vjhA in template set T0287 99 :LHAIAENPN 1vjhA 21 :FSAFVEDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11010 # 1uq5A.99.210 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 99 :LHAIAENPN 1uq5A 215 :STAIQESNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11011 # 1lniA.99.18 read from T0287.t2k.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1lniA)P27 T0287 99 :LHAIAEN 1lniA 19 :LNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11012 # 1w79A.99.8 read from T0287.t2k.many.frag # found chain 1w79A in template set T0287 99 :LHAIAENPN 1w79A 9 :IDAILEDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11013 # 3nul.100.49 read from T0287.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 3nul 51 :KKDFEEP T0287 108 :F 3nul 59 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=11015 # 1n5uA.100.261 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAE 1n5uA 262 :KYICE T0287 106 :PNF 1n5uA 268 :QDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11017 # 1g5aA.100.83 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 100 :HAIAENPNF 1g5aA 84 :IARENNPDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11018 # 1y1pA.100.115 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 100 :HAIAENPNF 1y1pA 117 :RAAAATPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11019 # 1q92A.100.61 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1q92A 93 :ISIWESK T0287 108 :F 1q92A 101 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=11021 # 2ffsA.100.29 read from T0287.t2k.many.frag # found chain 2ffsA in template set T0287 100 :HAIAENPNF 2ffsA 30 :VCRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11022 # 1gvjA.100.80 read from T0287.t2k.many.frag # found chain 1gvjA in training set T0287 100 :HAIAENPNF 1gvjA 376 :GKRKNKPKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11023 # 1f74A.100.151 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 100 :HAIAENPNF 1f74A 152 :GELYKNPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11024 # 1colA.100.63 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 102 :IAENPNF 1colA 66 :ITANPAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=11025 # 1kpsB.100.143 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 100 :HAIAENPNF 1kpsB 562 :LAFVTKPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11026 # 1yw4A.100.236 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 100 :HAIAENPNF 1yw4A 237 :RGLLSNPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11027 # 1zz1A.100.84 read from T0287.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 T0287 100 :HAIAENP 1zz1A 85 :KRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11028 # 1k5nA.100.168 read from T0287.t2k.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1k5nA 169 :RRYLEN T0287 107 :NF 1k5nA 176 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11030 # 1z5zA.100.156 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 100 :HAIAENPNF 1z5zA 792 :SKFQNNPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11031 # 1g8mA.100.133 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 100 :HAIAENPNF 1g8mA 134 :RAAAKNHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11032 # 1fi4A.100.365 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 100 :HAIAENPNF 1fi4A 346 :NHQFESSNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11033 # 1t1vA.100.50 read from T0287.t2k.many.frag # found chain 1t1vA in training set T0287 100 :HAIAENPNF 1t1vA 51 :RTLAGNPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11034 # 1h80A.100.46 read from T0287.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. T0287 100 :HAIAENPN 1h80A 74 :NAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11035 # 2bptA.100.685 read from T0287.t2k.many.frag # found chain 2bptA in template set T0287 100 :HAIAENPNF 2bptA 686 :AQMISNPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11036 # 1lc5A.100.281 read from T0287.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N107 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1lc5A 282 :QALCQLP T0287 108 :F 1lc5A 290 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=11038 # 1a4iA.100.85 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 100 :HAIAENPNF 1a4iA 86 :TSLNEDSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11039 # 1q6uA.100.107 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 100 :HAIAENPNF 1q6uA 108 :EKFAKEKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11040 # 1l0bA.100.23 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1l0bA 1612 :QKFAEK T0287 108 :F 1l0bA 1620 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=11042 # 1zl0A.100.72 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)H100 (1zl0A)H71 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)A103 (1zl0A)F74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N105 (1zl0A)M76 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AI 1zl0A 72 :NA T0287 104 :E 1zl0A 75 :D T0287 106 :PNF 1zl0A 77 :PDI Number of specific fragments extracted= 3 number of extra gaps= 3 total=11045 # 1vjhA.100.21 read from T0287.t2k.many.frag # found chain 1vjhA in template set T0287 100 :HAIAENPNF 1vjhA 22 :SAFVEDTNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11046 # 1z7xW.100.418 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 100 :HAIAENPNF 1z7xW 418 :VESVRQPGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11047 # 1ye8A.100.122 read from T0287.t2k.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1ye8A)N130 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAE 1ye8A 123 :RQIMH T0287 106 :P 1ye8A 129 :P T0287 108 :F 1ye8A 131 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=11050 # 1l9vA.100.114 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 100 :HAIAENPNF 1l9vA 115 :VIRKENPQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11051 # 1lu4A.100.47 read from T0287.t2k.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N107 (1lu4A)A1055 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1lu4A 1048 :QVAAANP T0287 108 :F 1lu4A 1056 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11053 # 1sra.100.44 read from T0287.t2k.many.frag # found chain 1sra in template set T0287 100 :HAIAENPNF 1sra 180 :KKIHENEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11054 # 3nul.101.50 read from T0287.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAENP 3nul 52 :KDFEEP T0287 108 :FL 3nul 59 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11056 # 1g5aA.101.84 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 101 :AIAENPNFL 1g5aA 85 :ARENNPDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11057 # 1n5uA.101.262 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F108 (1n5uA)S270 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAENPN 1n5uA 263 :YICENQD T0287 109 :L 1n5uA 271 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=11059 # 2ffsA.101.30 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 T0287 101 :AIAENPNF 2ffsA 31 :CRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=11060 # 1gvjA.101.81 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENPNF 1gvjA 377 :KRKNKPKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=11061 # 1q92A.101.62 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N105 (1q92A)S98 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1q92A 94 :SIWE T0287 106 :PNFL 1q92A 99 :KNFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11063 # 1yw4A.101.237 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 101 :AIAENPNFL 1yw4A 238 :GLLSNPQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11064 # 1fi4A.101.366 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAENP 1fi4A 347 :HQFESS T0287 108 :FL 1fi4A 354 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11066 # 1kpsB.101.144 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 101 :AIAENPNFL 1kpsB 563 :AFVTKPNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11067 # 1colA.101.64 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 102 :IAENPNFL 1colA 66 :ITANPAMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=11068 # 1f74A.101.152 read from T0287.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)A103 (1f74A)Y155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N105 (1f74A)N157 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AI 1f74A 153 :EL T0287 104 :E 1f74A 156 :K T0287 106 :PNFL 1f74A 158 :PKVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=11071 # 1y1pA.101.116 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 101 :AIAENPNFL 1y1pA 118 :AAAATPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11072 # 1w23A.101.313 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1w23A 314 :AKAKE T0287 107 :NFL 1w23A 320 :GFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11074 # 2bptA.101.686 read from T0287.t2k.many.frag # found chain 2bptA in template set T0287 101 :AIAENPNFL 2bptA 687 :QMISNPNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11075 # 1k5nA.101.169 read from T0287.t2k.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1k5nA 170 :RYLEN T0287 107 :NFL 1k5nA 176 :KET Number of specific fragments extracted= 2 number of extra gaps= 1 total=11077 # 1lu4A.101.48 read from T0287.t2k.many.frag # found chain 1lu4A in training set T0287 101 :AIAENPNFL 1lu4A 1049 :VAAANPAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11078 # 1g8mA.101.134 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 101 :AIAENPNFL 1g8mA 135 :AAAKNHARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11079 # 1z5zA.101.157 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 101 :AIAENPNFL 1z5zA 793 :KFQNNPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11080 # 1l0bA.101.24 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l0bA 1613 :KFAEK T0287 107 :NFL 1l0bA 1619 :RLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11082 # 1z7xW.101.419 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 101 :AIAENPNFL 1z7xW 419 :ESVRQPGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11083 # 1sra.101.45 read from T0287.t2k.many.frag # found chain 1sra in template set Warning: unaligning (T0287)N105 (1sra)N185 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1sra 181 :KIHE T0287 106 :PNFL 1sra 186 :EKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11085 # 1l9vA.101.115 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 101 :AIAENPNFL 1l9vA 116 :IRKENPQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11086 # 1vjhA.101.22 read from T0287.t2k.many.frag # found chain 1vjhA in template set T0287 101 :AIAENPNFL 1vjhA 23 :AFVEDTNRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11087 # 1h80A.101.47 read from T0287.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)N105 (1h80A)K79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. T0287 101 :AIAE 1h80A 75 :AISR T0287 106 :PN 1h80A 80 :PN T0287 109 :L 1h80A 83 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=11090 # 1l8aA.101.418 read from T0287.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l8aA 419 :HIRDR T0287 107 :NFL 1l8aA 425 :NVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11092 # 1zl0A.101.73 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)N105 (1zl0A)M76 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1zl0A 72 :NAFD T0287 106 :PNFL 1zl0A 77 :PDIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11094 # 1uehA.101.159 read from T0287.t2k.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAEN 1uehA 160 :EKVQQ T0287 107 :NFL 1uehA 166 :NLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=11096 # 1ye8A.101.123 read from T0287.t2k.many.frag # found chain 1ye8A in training set T0287 101 :AIAENPNFL 1ye8A 124 :QIMHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11097 # 1sbxA.101.54 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1sbxA 141 :AVCDE T0287 107 :NFL 1sbxA 147 :HIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=11099 # 1zz1A.101.85 read from T0287.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 T0287 101 :AIAENP 1zz1A 86 :RVSNLP T0287 109 :L 1zz1A 94 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=11101 # 3nul.102.51 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 102 :IAENPNFLF 3nul 53 :DFEEPGFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11102 # 1g5aA.102.85 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 102 :IAENPNFLF 1g5aA 86 :RENNPDWIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11103 # 1n5uA.102.263 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F108 (1n5uA)S270 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAENPN 1n5uA 264 :ICENQD T0287 109 :LF 1n5uA 271 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11105 # 1gvjA.102.82 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IA 1gvjA 378 :RK T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :F 1gvjA 386 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=11108 # 2ffsA.102.31 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 102 :IAENPNF 2ffsA 32 :RAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=11109 # 1colA.102.65 read from T0287.t2k.many.frag # found chain 1colA in template set T0287 102 :IAENPNFLF 1colA 66 :ITANPAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11110 # 1q92A.102.63 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAENP 1q92A 95 :IWESK T0287 108 :FLF 1q92A 101 :FFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11112 # 1yw4A.102.238 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 102 :IAENPNFLF 1yw4A 239 :LLSNPQANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11113 # 1w23A.102.314 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1w23A 315 :KAKE T0287 108 :FL 1w23A 321 :FV Number of specific fragments extracted= 2 number of extra gaps= 2 total=11115 # 1lu4A.102.49 read from T0287.t2k.many.frag # found chain 1lu4A in training set T0287 102 :IAENPNFLF 1lu4A 1050 :AAANPAVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11116 # 1f74A.102.153 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 102 :IAENPNFLF 1f74A 154 :LYKNPKVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11117 # 1kpsB.102.145 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 102 :IAENPNFLF 1kpsB 564 :FVTKPNGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11118 # 1z5zA.102.158 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 102 :IAENPNFLF 1z5zA 794 :FQNNPSVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11119 # 1fi4A.102.367 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 102 :IAENPNFLF 1fi4A 348 :QFESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11120 # 2bptA.102.687 read from T0287.t2k.many.frag # found chain 2bptA in template set T0287 102 :IAENPNFLF 2bptA 688 :MISNPNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11121 # 1y1pA.102.117 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 102 :IAENPNFLF 1y1pA 119 :AAATPSVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11122 # 1l9vA.102.116 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 102 :IAENPNFLF 1l9vA 117 :RKENPQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11123 # 1z7xW.102.420 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 102 :IAENPNFLF 1z7xW 420 :SVRQPGCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11124 # 1l0bA.102.25 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1l0bA 1614 :FAEK T0287 108 :FLF 1l0bA 1620 :LAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11126 # 1zl0A.102.74 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)F110 (1zl0A)A81 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IAENPNFL 1zl0A 73 :AFDMPDIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=11127 # 1sbxA.102.55 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1sbxA 142 :VCDE T0287 108 :FLF 1sbxA 148 :IYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=11129 # 1sra.102.46 read from T0287.t2k.many.frag # found chain 1sra in template set Warning: unaligning (T0287)N105 (1sra)N185 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1sra 182 :IHE T0287 106 :PNFLF 1sra 186 :EKRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11131 # 1yt8A.102.452 read from T0287.t2k.many.frag # found chain 1yt8A in template set T0287 102 :IAENPNFLF 1yt8A 453 :LSGKPVFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11132 # 1h80A.102.48 read from T0287.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IAENPNF 1h80A 76 :ISRKPNG T0287 110 :F 1h80A 84 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=11134 # 1musA.102.62 read from T0287.t2k.many.frag # found chain 1musA in template set T0287 102 :IAENPNFLF 1musA 63 :FIRNPNVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11135 # 1ye8A.102.124 read from T0287.t2k.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 T0287 102 :IAENPNFL 1ye8A 125 :IMHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11136 # 1rp0A.102.57 read from T0287.t2k.many.frag # found chain 1rp0A in training set T0287 102 :IAENPNFLF 1rp0A 58 :ISKNPNVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11137 # 1uehA.102.160 read from T0287.t2k.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1uehA 161 :KVQQ T0287 108 :FLF 1uehA 167 :LQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11139 # 1l8aA.102.419 read from T0287.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l8aA)N425 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1l8aA 420 :IRDR T0287 108 :FLF 1l8aA 426 :VPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11141 # 1a4iA.102.87 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 102 :IAENPNFLF 1a4iA 88 :LNEDSTVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11142 # 3nul.103.52 read from T0287.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AENP 3nul 54 :FEEP T0287 108 :FLFS 3nul 59 :FLAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11144 # 1g5aA.103.86 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. T0287 103 :AE 1g5aA 87 :EN T0287 106 :PNFLFS 1g5aA 90 :PDWILS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11146 # 1gvjA.103.83 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :A 1gvjA 379 :K T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FS 1gvjA 386 :YE Number of specific fragments extracted= 3 number of extra gaps= 2 total=11149 # 1n5uA.103.264 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 103 :AENPNFLFS 1n5uA 265 :CENQDSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11150 # 2ffsA.103.32 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 103 :AENPNF 2ffsA 33 :AREPQY T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11152 # 1yw4A.103.239 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 103 :AENPNFLFS 1yw4A 240 :LSNPQANVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11153 # 1kpsB.103.146 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 103 :AENPNFLFS 1kpsB 565 :VTKPNGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11154 # 1z5zA.103.159 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 103 :AENPNFLFS 1z5zA 795 :QNNPSVKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11155 # 1lu4A.103.50 read from T0287.t2k.many.frag # found chain 1lu4A in training set T0287 103 :AENPNFLFS 1lu4A 1051 :AANPAVTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11156 # 1colA.103.66 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AE 1colA 67 :TA T0287 106 :PNFLFS 1colA 70 :PAMKIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11158 # 1q92A.103.64 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AENP 1q92A 96 :WESK T0287 108 :FLFS 1q92A 101 :FFFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11160 # 1f74A.103.154 read from T0287.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)A103 (1f74A)Y155 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1f74A 156 :KNPKVLGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11161 # 1yt8A.103.453 read from T0287.t2k.many.frag # found chain 1yt8A in template set T0287 103 :AENPNFLFS 1yt8A 454 :SGKPVFLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11162 # 1w23A.103.315 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1w23A 316 :AKE T0287 107 :NFLFS 1w23A 320 :GFVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11164 # 1l9vA.103.117 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 103 :AENPNFLFS 1l9vA 118 :KENPQDILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11165 # 1z7xW.103.421 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 103 :AENPNFLFS 1z7xW 421 :VRQPGCLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11166 # 2bptA.103.688 read from T0287.t2k.many.frag # found chain 2bptA in template set Warning: unaligning (T0287)N105 (2bptA)N691 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AE 2bptA 689 :IS T0287 106 :PNFLFS 2bptA 692 :PNARRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11168 # 1fi4A.103.368 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :AENPNFLF 1fi4A 349 :FESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=11169 # 2jdxA.103.201 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AEN 2jdxA 239 :AAQ T0287 107 :NFLFS 2jdxA 243 :KFVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11171 # 1sbxA.103.56 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1sbxA 143 :CDE T0287 108 :FLFS 1sbxA 148 :IYCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11173 # 1l0bA.103.26 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1l0bA 1615 :AEK T0287 107 :NFLFS 1l0bA 1619 :RLALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11175 # 1eokA.103.18 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 103 :AENPNFLFS 1eokA 19 :GRNPTFKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11176 # 1ye8A.103.125 read from T0287.t2k.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N107 (1ye8A)N130 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1ye8A)V134 T0287 103 :AENP 1ye8A 126 :MHDP T0287 108 :FL 1ye8A 131 :VN Number of specific fragments extracted= 2 number of extra gaps= 2 total=11178 # 1musA.103.63 read from T0287.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0287)N107 (1musA)N68 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1musA 64 :IRNP T0287 108 :FLFS 1musA 69 :VSAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11180 # 1rlzA.103.213 read from T0287.t2k.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1rlzA 214 :I T0287 105 :NPNFLFS 1rlzA 216 :NPESVYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=11182 # 1oygA.103.31 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 103 :AENPNFLFS 1oygA 58 :QKNEKYQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11183 # 2f2gA.103.95 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 2f2gA 96 :GSK T0287 107 :NFLFS 2f2gA 100 :DVDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11185 # 1kcfA.103.198 read from T0287.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0287)P106 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1kcfA 199 :IDG T0287 107 :NFLFS 1kcfA 203 :KILFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11187 # 1rp0A.103.58 read from T0287.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0287)N107 (1rp0A)N63 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1rp0A 59 :SKNP T0287 108 :FLFS 1rp0A 64 :VQVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11189 # 1x9iA.103.8 read from T0287.t2k.many.frag # found chain 1x9iA in training set T0287 103 :AENPNFLFS 1x9iA 9 :LNWENYILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11190 # 1gvjA.104.84 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FSK 1gvjA 386 :YEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=11192 # 3nul.104.53 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 104 :ENPNFLFSK 3nul 55 :EEPGFLAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11193 # 1yw4A.104.240 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1yw4A 241 :SNPQANVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11194 # 1n5uA.104.265 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1n5uA)S272 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :E 1n5uA 266 :E T0287 106 :PNFL 1n5uA 268 :QDSI T0287 111 :SK 1n5uA 273 :SK Number of specific fragments extracted= 3 number of extra gaps= 2 total=11197 # 1kpsB.104.147 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 104 :ENPNFLFSK 1kpsB 566 :TKPNGALET Number of specific fragments extracted= 1 number of extra gaps= 0 total=11198 # 1g5aA.104.87 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N107 (1g5aA)D91 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1g5aA)L94 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENP 1g5aA 88 :NNP T0287 108 :FL 1g5aA 92 :WI T0287 111 :SK 1g5aA 95 :SN Number of specific fragments extracted= 3 number of extra gaps= 2 total=11201 # 2ffsA.104.33 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)F108 (2ffsA)Y38 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENPN 2ffsA 34 :REPQ T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=11203 # 1z5zA.104.160 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 104 :ENPNFLFSK 1z5zA 796 :NNPSVKFIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11204 # 1eokA.104.19 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 104 :ENPNFLFSK 1eokA 20 :RNPTFKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11205 # 1x9iA.104.9 read from T0287.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1x9iA 10 :NWENYILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=11206 # 1z7xW.104.422 read from T0287.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :E 1z7xW 422 :R T0287 106 :PNFLFSK 1z7xW 424 :PGCLLEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=11208 # 2jdxA.104.202 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 2jdxA 240 :AQ T0287 107 :NFLFSK 2jdxA 243 :KFVTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11210 # 1oygA.104.32 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 104 :ENPNFLFSK 1oygA 59 :KNEKYQVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11211 # 1q92A.104.65 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENP 1q92A 97 :ESK T0287 108 :FLFSK 1q92A 101 :FFFEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11213 # 1yt8A.104.454 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. T0287 105 :NPNFLFSK 1yt8A 456 :KPVFLLDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=11214 # 1sbxA.104.57 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1sbxA 144 :DE T0287 108 :FLFSK 1sbxA 148 :IYCSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11216 # 1lu4A.104.51 read from T0287.t2k.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N107 (1lu4A)A1055 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1lu4A)G1060 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :ENP 1lu4A 1052 :ANP T0287 108 :FLFS 1lu4A 1056 :VTFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=11218 # 1colA.104.67 read from T0287.t2k.many.frag # found chain 1colA in template set T0287 104 :ENPNFLFSK 1colA 68 :ANPAMKINK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11219 # 1ox0A.104.105 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)K112 (1ox0A)A95 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1ox0A 87 :NHANLDVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11220 # 1rlzA.104.214 read from T0287.t2k.many.frag # found chain 1rlzA in template set T0287 104 :ENPNFLFSK 1rlzA 215 :NNPESVYYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11221 # 1l9vA.104.118 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 104 :ENPNFLFSK 1l9vA 119 :ENPQDILFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11222 # 2f2gA.104.96 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 2f2gA 97 :SK T0287 108 :FLFSK 2f2gA 101 :VDFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=11224 # 1fi4A.104.369 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLF 1fi4A 350 :ESSNFTA T0287 112 :K 1fi4A 358 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=11226 # 1tjvA.104.400 read from T0287.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1tjvA 401 :ET T0287 108 :FLFSK 1tjvA 405 :ITINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11228 # 1qlmA.104.269 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1qlmA 270 :EE T0287 109 :LFSK 1qlmA 275 :DFYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11230 # 1w23A.104.279 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)N105 (1w23A)S281 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 (1w23A)N282 because L (left) conformation "forbidden" or filtered. T0287 104 :E 1w23A 280 :E T0287 107 :NFLFSK 1w23A 283 :GFYVGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=11232 # 1w23A.104.316 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 317 :KE T0287 108 :FL 1w23A 321 :FV T0287 111 :SK 1w23A 324 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=11235 # 1pea.104.301 read from T0287.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1pea 302 :AA T0287 107 :NFLFSK 1pea 305 :NWRVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=11237 # 1musA.104.64 read from T0287.t2k.many.frag # found chain 1musA in template set T0287 104 :ENPNFLFSK 1musA 65 :RNPNVSAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11238 # 1rz4A.104.55 read from T0287.t2k.many.frag # found chain 1rz4A in template set T0287 104 :ENPNFLFSK 1rz4A 56 :FNPAFFQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11239 # 1yw4A.105.241 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1yw4A 242 :NPQANVP T0287 113 :F 1yw4A 250 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=11241 # 1gvjA.105.85 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FSKF 1gvjA 386 :YEKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11243 # 1oygA.105.33 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 105 :NPNFLFSKF 1oygA 60 :NEKYQVPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11244 # 1n5uA.105.266 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 105 :NPNFLFSKF 1n5uA 267 :NQDSISSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11245 # 1ox0A.105.106 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 T0287 105 :NPNFLFSK 1ox0A 88 :HANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=11246 # 1sbxA.105.58 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1sbxA 145 :E T0287 108 :FLFSKF 1sbxA 148 :IYCSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=11248 # 1eokA.105.20 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 105 :NPNFLFSKF 1eokA 21 :NPTFKLKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11249 # 1x9iA.105.10 read from T0287.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)S111 (1x9iA)R17 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLF 1x9iA 11 :WENYIL T0287 113 :F 1x9iA 19 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11251 # 2ffsA.105.34 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 105 :NPNF 2ffsA 35 :EPQY T0287 111 :SKF 2ffsA 41 :VGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11253 # 1qlmA.105.270 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1qlmA 271 :E T0287 107 :N 1qlmA 273 :D T0287 109 :LFSKF 1qlmA 275 :DFYKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=11256 # 2jdxA.105.203 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 2jdxA 241 :Q T0287 107 :NFLFSKF 2jdxA 243 :KFVTTEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11258 # 1tjvA.105.401 read from T0287.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1tjvA 402 :T T0287 107 :NFLFSKF 1tjvA 404 :GITINKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11260 # 2f2gA.105.97 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 2f2gA 98 :K T0287 107 :NFLFSKF 2f2gA 100 :DVDFSTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11262 # 1w23A.105.317 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1w23A 318 :E T0287 107 :NFL 1w23A 320 :GFV T0287 111 :SKF 1w23A 324 :LNG Number of specific fragments extracted= 3 number of extra gaps= 2 total=11265 # 1pea.105.302 read from T0287.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1pea)N305 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :N 1pea 303 :A T0287 108 :FLFSKF 1pea 306 :WRVEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11267 # 1g5aA.105.88 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 105 :NPNFLFSKF 1g5aA 89 :NPDWILSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11268 # 1fi4A.105.370 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NP 1fi4A 351 :SS T0287 108 :FLF 1fi4A 354 :FTA T0287 112 :KF 1fi4A 358 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=11271 # 1zvdA.105.240 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 105 :NPNFLFSKF 1zvdA 609 :IPQHLLKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11272 # 3nul.105.54 read from T0287.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (3nul)T63 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NP 3nul 56 :EP T0287 108 :FLFS 3nul 59 :FLAP T0287 113 :F 3nul 64 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=11275 # 1kpsB.105.148 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 105 :NPNFLFSKF 1kpsB 567 :KPNGALETC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11276 # 1rz4A.105.56 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)N105 (1rz4A)N57 because D (zeta) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1rz4A 58 :PAFFQTTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11277 # 1yt8A.105.455 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)S111 (1yt8A)D462 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 105 :NPNFLF 1yt8A 456 :KPVFLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11278 # 1uehA.105.163 read from T0287.t2k.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1uehA 164 :Q T0287 108 :FLFSKF 1uehA 167 :LQPDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11280 # 2b59B.105.152 read from T0287.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NP 2b59B 153 :HF T0287 108 :FLFSKF 2b59B 156 :ATSSDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=11282 # 1u8xX.105.455 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 T0287 105 :N 1u8xX 433 :A T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=11285 # 1z7xW.105.423 read from T0287.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)K112 (1z7xW)Q430 because E (beta_S) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1z7xW 423 :QPGCLLE T0287 113 :F 1z7xW 431 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=11287 # 1colA.105.68 read from T0287.t2k.many.frag # found chain 1colA in template set T0287 105 :NPNFLFSKF 1colA 69 :NPAMKINKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11288 # 1s4nA.105.203 read from T0287.t2k.many.frag # found chain 1s4nA in template set T0287 105 :NPNFLFSKF 1s4nA 298 :NPEYLDENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11289 # 1wteA.105.97 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1wteA)F106 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NP 1wteA 98 :NE T0287 108 :FLFSK 1wteA 101 :FIHPC Number of specific fragments extracted= 2 number of extra gaps= 2 total=11291 # 1oqjA.105.76 read from T0287.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1oqjA 162 :S T0287 107 :NFLFSKF 1oqjA 164 :QIDFYQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=11293 # 1ox0A.106.107 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)N107 (1ox0A)N90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 106 :P 1ox0A 89 :A T0287 108 :FLFSK 1ox0A 91 :LDVEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=11295 # 1oygA.106.34 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 106 :PNFLFSKFD 1oygA 61 :EKYQVPEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11296 # 1yw4A.106.242 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1yw4A 243 :PQANVP T0287 113 :FD 1yw4A 250 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11298 # 1gvjA.106.86 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNF 1gvjA 382 :PKM T0287 110 :FSKFD 1gvjA 386 :YEKLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11300 # 1n5uA.106.267 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 106 :PNFLFSKFD 1n5uA 268 :QDSISSKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11301 # 1zvdA.106.241 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 106 :PNFLFSKFD 1zvdA 610 :PQHLLKTFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11302 # 1eokA.106.21 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 106 :PNFLFSKFD 1eokA 22 :PTFKLKDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11303 # 1sbxA.106.59 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1sbxA 147 :HIYCSRCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=11304 # 1x9iA.106.11 read from T0287.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLFS 1x9iA 12 :ENYILR T0287 113 :FD 1x9iA 19 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11306 # 1pea.106.303 read from T0287.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1pea)W306 because G (3-10) conformation "forbidden" or filtered. T0287 107 :N 1pea 305 :N T0287 109 :LFSKFD 1pea 307 :RVEDVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=11308 # 2f2gA.106.98 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 2f2gA 101 :VDFSTVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11309 # 1qlmA.106.271 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1qlmA 274 :YDFYKID Number of specific fragments extracted= 1 number of extra gaps= 1 total=11310 # 1tjvA.106.402 read from T0287.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1tjvA 405 :ITINKL Number of specific fragments extracted= 1 number of extra gaps= 2 total=11311 # 2jdxA.106.204 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (2jdxA)T247 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLF 2jdxA 243 :KFVT T0287 112 :KFD 2jdxA 248 :EFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=11313 # 1odmA.106.167 read from T0287.t2k.many.frag # found chain 1odmA in training set T0287 106 :PNFLFSKFD 1odmA 168 :ENFFARHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11314 # 1uehA.106.164 read from T0287.t2k.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1uehA 167 :LQPDQID Number of specific fragments extracted= 1 number of extra gaps= 1 total=11315 # 1t4bA.106.210 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)P106 (1t4bA)G211 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1t4bA)F218 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSK 1t4bA 212 :ELPVDN T0287 114 :D 1t4bA 219 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=11317 # 2ffsA.106.35 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 106 :PNF 2ffsA 36 :PQY T0287 111 :SKFD 2ffsA 41 :VGLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11319 # 1yt8A.106.456 read from T0287.t2k.many.frag # found chain 1yt8A in template set T0287 106 :PNFLFSKFD 1yt8A 457 :PVFLLDGGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11320 # 1pkhA.106.14 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)P106 (1pkhA)K15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FD 1pkhA 22 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=11322 # 2b59B.106.153 read from T0287.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :P 2b59B 154 :F T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11324 # 1fi4A.106.371 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 106 :PNFLFSKFD 1fi4A 352 :SNFTARELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11325 # 1u8xX.106.456 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 3 total=11327 # 1w23A.106.318 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFL 1w23A 320 :GFV T0287 111 :S 1w23A 324 :L T0287 113 :F 1w23A 326 :G Number of specific fragments extracted= 3 number of extra gaps= 4 total=11330 # 1u8xX.106.316 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 106 :P 1u8xX 294 :E T0287 109 :L 1u8xX 297 :I T0287 113 :FD 1u8xX 301 :CD Number of specific fragments extracted= 3 number of extra gaps= 2 total=11333 # 1up8A.106.170 read from T0287.t2k.many.frag # found chain 1up8A in template set T0287 106 :PNFLFSKFD 1up8A 170 :REIEFSEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11334 # 1qw9A.106.11 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 106 :PNFLF 1qw9A 12 :KDFKI T0287 113 :FD 1qw9A 19 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=11336 # 1wteA.106.98 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. T0287 106 :P 1wteA 99 :E T0287 108 :FLFSKFD 1wteA 101 :FIHPCFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11338 # 1s4nA.106.204 read from T0287.t2k.many.frag # found chain 1s4nA in template set T0287 106 :PNFLFSKFD 1s4nA 299 :PEYLDENNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11339 # 1oqjA.106.77 read from T0287.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :FD 1oqjA 170 :HD Number of specific fragments extracted= 2 number of extra gaps= 2 total=11341 # 1oygA.107.35 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 107 :NFLFSKFDR 1oygA 62 :KYQVPEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11342 # 1ox0A.107.108 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)N107 (1ox0A)N90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 108 :FLFSK 1ox0A 91 :LDVEA T0287 115 :R 1ox0A 98 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=11344 # 1zvdA.107.242 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 107 :NFLFSKFDR 1zvdA 611 :QHLLKTFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11345 # 1yw4A.107.243 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 107 :NFLFSKFDR 1yw4A 244 :QANVPDLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11346 # 1pkhA.107.15 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FDR 1pkhA 22 :FNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11348 # 1eokA.107.22 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 107 :NFLFSKFDR 1eokA 23 :TFKLKDIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11349 # 1tjvA.107.403 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 107 :NFLFSKFDR 1tjvA 404 :GITINKLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11350 # 1qlmA.107.272 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 107 :N 1qlmA 273 :D T0287 109 :LFSKFDR 1qlmA 275 :DFYKIDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11352 # 1t4bA.107.211 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1t4bA 212 :ELPVDNF T0287 115 :R 1t4bA 220 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11354 # 1sbxA.107.60 read from T0287.t2k.many.frag # found chain 1sbxA in training set T0287 107 :NFLFSKFDR 1sbxA 147 :HIYCSRCTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11355 # 1pea.107.304 read from T0287.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0287)F108 (1pea)W306 because G (3-10) conformation "forbidden" or filtered. T0287 107 :N 1pea 305 :N T0287 109 :LFSKFDR 1pea 307 :RVEDVQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11357 # 1qw9A.107.12 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 107 :NFLF 1qw9A 13 :DFKI T0287 113 :FDR 1qw9A 19 :IDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11359 # 1n5uA.107.268 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 107 :NFLFSKFDR 1n5uA 269 :DSISSKLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11360 # 1yt8A.107.457 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)S111 (1yt8A)D462 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLF 1yt8A 458 :VFLL T0287 112 :KFDR 1yt8A 463 :GGTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11362 # 1y93A.107.41 read from T0287.t2k.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1y93A 146 :PLKFSKIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11363 # 1up8A.107.171 read from T0287.t2k.many.frag # found chain 1up8A in template set T0287 107 :NFLFSKFDR 1up8A 171 :EIEFSEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11364 # 2f2gA.107.99 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)D114 (2f2gA)V107 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 2f2gA 100 :DVDFSTV T0287 115 :R 2f2gA 108 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=11366 # 1x9iA.107.12 read from T0287.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFS 1x9iA 13 :NYILR T0287 113 :FDR 1x9iA 19 :VDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11368 # 1uehA.107.165 read from T0287.t2k.many.frag # found chain 1uehA in training set T0287 107 :NFLFSKFDR 1uehA 166 :NLQPDQIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11369 # 1gvjA.107.87 read from T0287.t2k.many.frag # found chain 1gvjA in training set T0287 107 :NFLFSKFDR 1gvjA 383 :KMNYEKLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11370 # 2b59B.107.154 read from T0287.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 107 :NFLFSKFD 2b59B 155 :GATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11371 # 1w4sA.107.113 read from T0287.t2k.many.frag # found chain 1w4sA in template set T0287 107 :NFLFSKFDR 1w4sA 1043 :KLCPENFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11372 # 1odmA.107.168 read from T0287.t2k.many.frag # found chain 1odmA in training set Warning: unaligning (T0287)K112 (1odmA)H174 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFS 1odmA 169 :NFFAR T0287 113 :FDR 1odmA 175 :FKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11374 # 1u8xX.107.317 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 109 :L 1u8xX 297 :I T0287 113 :FDR 1u8xX 301 :CDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=11376 # 1srvA.107.114 read from T0287.t2k.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1srvA 306 :GFKLENA T0287 115 :R 1srvA 314 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=11378 # 2jdxA.107.205 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)S111 (2jdxA)T247 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLF 2jdxA 243 :KFVT T0287 112 :KFDR 2jdxA 248 :EFEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11380 # 1e4cP.107.43 read from T0287.t2k.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)N107 (1e4cP)G44 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1e4cP 45 :IPYEKLTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11381 # 1oqjA.107.78 read from T0287.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :FDR 1oqjA 170 :HDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11383 # 1rqpA.107.171 read from T0287.t2k.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1rqpA 172 :GFPLSEV T0287 115 :R 1rqpA 180 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=11385 # 1w23A.107.319 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFL 1w23A 320 :GFV T0287 111 :SKFDR 1w23A 324 :LNGHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11387 # 1ox0A.108.109 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 108 :FLFSK 1ox0A 91 :LDVEA T0287 115 :RS 1ox0A 98 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11389 # 1oygA.108.36 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 108 :FLFSKFDRS 1oygA 63 :YQVPEFDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11390 # 1zvdA.108.243 read from T0287.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1zvdA 612 :HLLKTF T0287 115 :RS 1zvdA 619 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11392 # 1qw9A.108.13 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 108 :FLF 1qw9A 14 :FKI T0287 113 :FDRS 1qw9A 19 :IDKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11394 # 1yw4A.108.244 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFS 1yw4A 245 :ANVP T0287 113 :FDRS 1yw4A 250 :LDED Number of specific fragments extracted= 2 number of extra gaps= 1 total=11396 # 1pkhA.108.16 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. T0287 108 :FLFS 1pkhA 17 :IIIK T0287 113 :F 1pkhA 22 :F T0287 115 :RS 1pkhA 24 :KD Number of specific fragments extracted= 3 number of extra gaps= 2 total=11399 # 1tjvA.108.404 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 108 :FLFSKFDRS 1tjvA 405 :ITINKLSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11400 # 1t4bA.108.212 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 108 :FLFSKFDRS 1t4bA 213 :LPVDNFGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11401 # 1eokA.108.23 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1eokA 24 :FKLKDIPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11402 # 1y93A.108.42 read from T0287.t2k.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)S116 (1y93A)G155 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1y93A 147 :LKFSKINT Number of specific fragments extracted= 1 number of extra gaps= 1 total=11403 # 1qlmA.108.273 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKFDRS 1qlmA 275 :DFYKIDPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=11404 # 1sbxA.108.61 read from T0287.t2k.many.frag # found chain 1sbxA in training set T0287 108 :FLFSKFDRS 1sbxA 148 :IYCSRCTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11405 # 1w4sA.108.114 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFS 1w4sA 1044 :LCPE T0287 113 :FDRS 1w4sA 1049 :FRDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11407 # 1up8A.108.172 read from T0287.t2k.many.frag # found chain 1up8A in template set T0287 108 :FLFSKFDRS 1up8A 172 :IEFSEFDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11408 # 1srvA.108.115 read from T0287.t2k.many.frag # found chain 1srvA in template set T0287 108 :FLFSKFDRS 1srvA 307 :FKLENATLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11409 # 1pe9A.108.286 read from T0287.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFS 1pe9A 287 :FTIA T0287 113 :FDRS 1pe9A 292 :LSAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11411 # 1pea.108.305 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 108 :FLFSKFDRS 1pea 306 :WRVEDVQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11412 # 1e4cP.108.44 read from T0287.t2k.many.frag # found chain 1e4cP in training set T0287 108 :FLFSKFDRS 1e4cP 45 :IPYEKLTES Number of specific fragments extracted= 1 number of extra gaps= 0 total=11413 # 1uehA.108.166 read from T0287.t2k.many.frag # found chain 1uehA in training set T0287 108 :FLFSKFDRS 1uehA 167 :LQPDQIDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11414 # 1rqpA.108.172 read from T0287.t2k.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1rqpA)R180 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1rqpA 173 :FPLSEV T0287 116 :S 1rqpA 181 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=11416 # 1yt8A.108.458 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFS 1yt8A 459 :FLLD T0287 114 :DRS 1yt8A 465 :TSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11418 # 2be1A.108.223 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)K112 (2be1A)D338 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFS 2be1A 334 :LLAS T0287 113 :FDRS 2be1A 339 :LDFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11420 # 1n5uA.108.269 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 108 :FLFSKFDRS 1n5uA 270 :SISSKLKEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11421 # 1tt8A.108.103 read from T0287.t2k.many.frag # found chain 1tt8A in training set T0287 108 :FLFSKFDRS 1tt8A 104 :LALQKLGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11422 # 1odmA.108.169 read from T0287.t2k.many.frag # found chain 1odmA in training set T0287 108 :FLFSKFDRS 1odmA 170 :FFARHFKPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11423 # 1bkrA.108.21 read from T0287.t2k.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFS 1bkrA 22 :VNIH T0287 113 :FDRS 1bkrA 27 :FTTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11425 # 2b59B.108.155 read from T0287.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11426 # 1hs6A.108.481 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1hs6A 481 :DDLNSF T0287 115 :RS 1hs6A 488 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11428 # 1my7A.108.23 read from T0287.t2k.many.frag # found chain 1my7A in training set T0287 108 :FLFSKFDRS 1my7A 214 :LLCDKVQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11429 # 1u8xX.108.458 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 T0287 108 :FL 1u8xX 436 :DF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=11431 # 1ox0A.109.110 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 109 :LFSK 1ox0A 92 :DVEA T0287 115 :RSI 1ox0A 98 :RDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11433 # 1oygA.109.37 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 109 :LFSKFDRSI 1oygA 64 :QVPEFDSST Number of specific fragments extracted= 1 number of extra gaps= 0 total=11434 # 1zvdA.109.244 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 109 :LFSKFDRSI 1zvdA 613 :LLKTFDEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11435 # 1qw9A.109.14 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 109 :LF 1qw9A 15 :KI T0287 113 :FDRSI 1qw9A 19 :IDKRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11437 # 1yw4A.109.245 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 109 :LFSKFDRSI 1yw4A 246 :NVPDLDEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11438 # 1pkhA.109.17 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFS 1pkhA 18 :IIK T0287 113 :F 1pkhA 22 :F T0287 115 :RSI 1pkhA 24 :KDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=11441 # 1tjvA.109.405 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 109 :LFSKFDRSI 1tjvA 406 :TINKLSLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=11442 # 1t4bA.109.213 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1t4bA)P221 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFSKF 1t4bA 214 :PVDNF T0287 115 :R 1t4bA 220 :V T0287 117 :I 1t4bA 222 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=11445 # 1srvA.109.116 read from T0287.t2k.many.frag # found chain 1srvA in template set T0287 109 :LFSKFDRSI 1srvA 308 :KLENATLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11446 # 1qlmA.109.274 read from T0287.t2k.many.frag # found chain 1qlmA in template set T0287 109 :LFSKFDRSI 1qlmA 275 :DFYKIDPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11447 # 1eokA.109.24 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 109 :LFSKFDRSI 1eokA 25 :KLKDIPDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11448 # 1e4cP.109.45 read from T0287.t2k.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)D114 (1e4cP)T51 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFSKF 1e4cP 46 :PYEKL T0287 115 :RSI 1e4cP 52 :ESH Number of specific fragments extracted= 2 number of extra gaps= 1 total=11450 # 1h2wA.109.316 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K112 (1h2wA)D320 because D (zeta) conformation "forbidden" or filtered. T0287 109 :LFS 1h2wA 317 :DFT T0287 113 :FDRSI 1h2wA 321 :PEESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11452 # 1sbxA.109.62 read from T0287.t2k.many.frag # found chain 1sbxA in training set T0287 109 :LFSKFDRSI 1sbxA 149 :YCSRCTADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11453 # 1w4sA.109.115 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 109 :LFS 1w4sA 1045 :CPE T0287 113 :FDRSI 1w4sA 1049 :FRDED Number of specific fragments extracted= 2 number of extra gaps= 1 total=11455 # 1y93A.109.43 read from T0287.t2k.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)S116 (1y93A)G155 because S (epsilon) conformation "forbidden" or filtered. T0287 109 :LFSKFDR 1y93A 148 :KFSKINT T0287 117 :I 1y93A 156 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=11457 # 1tt8A.109.104 read from T0287.t2k.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 109 :LFSKF 1tt8A 105 :ALQKL T0287 115 :RSI 1tt8A 111 :KTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11459 # 1pe9A.109.287 read from T0287.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 109 :LFS 1pe9A 288 :TIA T0287 113 :FDRSI 1pe9A 292 :LSASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11461 # 1uehA.109.167 read from T0287.t2k.many.frag # found chain 1uehA in training set T0287 109 :LFSKFDRSI 1uehA 168 :QPDQIDEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11462 # 1rqpA.109.173 read from T0287.t2k.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 1rqpA 174 :PLSEV T0287 115 :RSI 1rqpA 180 :RPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11464 # 1kg0C.109.54 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L109 (1kg0C)Y140 because Y (epsilon') conformation "forbidden" or filtered. T0287 110 :FSKFDRSI 1kg0C 141 :FYGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11465 # 1g9gA.109.98 read from T0287.t2k.many.frag # found chain 1g9gA in template set T0287 109 :LFSKFDRSI 1g9gA 99 :SMSRYDANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11466 # 1up8A.109.173 read from T0287.t2k.many.frag # found chain 1up8A in template set T0287 109 :LFSKFDRSI 1up8A 173 :EFSEFDSPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11467 # 1hs6A.109.482 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 109 :LFSKFDRSI 1hs6A 482 :DLNSFNATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11468 # 1pea.109.306 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 109 :LFSKFDRSI 1pea 307 :RVEDVQRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11469 # 1ut7A.109.52 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D50 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 Warning: unaligning (T0287)I117 (1ut7A)V58 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RS 1ut7A 56 :PW Number of specific fragments extracted= 2 number of extra gaps= 3 total=11471 # 1qxmA.109.188 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)F113 (1qxmA)F179 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LFSK 1qxmA 175 :LWQW T0287 114 :DRSI 1qxmA 180 :DSSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11473 # 2a3nA.109.260 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 2a3nA 249 :ALELL T0287 115 :RSI 2a3nA 255 :KDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11475 # 1bkrA.109.22 read from T0287.t2k.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFS 1bkrA 23 :NIH T0287 113 :FDRSI 1bkrA 27 :FTTSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=11477 # 1u8xX.109.459 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 Warning: unaligning (T0287)I117 because last residue in template chain is (1u8xX)P445 T0287 109 :L 1u8xX 437 :F T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=11479 # 1ox0A.110.111 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)K112 (1ox0A)A95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 110 :FS 1ox0A 93 :VE T0287 115 :RSIL 1ox0A 98 :RDRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11481 # 1oygA.110.38 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)K112 (1oygA)E67 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FS 1oygA 65 :VP T0287 113 :FDRSIL 1oygA 68 :FDSSTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11483 # 1qw9A.110.15 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 110 :F 1qw9A 16 :I T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=11485 # 1zvdA.110.245 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 110 :FSKFDRSIL 1zvdA 614 :LKTFDEKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11486 # 1yw4A.110.246 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FS 1yw4A 247 :VP T0287 113 :FDRSIL 1yw4A 250 :LDEDKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11488 # 1t4bA.110.214 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 110 :FSKFDRSIL 1t4bA 215 :VDNFGVPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11489 # 1srvA.110.117 read from T0287.t2k.many.frag # found chain 1srvA in template set T0287 110 :FSKFDRSIL 1srvA 309 :LENATLSML Number of specific fragments extracted= 1 number of extra gaps= 0 total=11490 # 1h2wA.110.317 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 110 :FSKFDRSIL 1h2wA 318 :FTDPEESKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11491 # 1pkhA.110.18 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 110 :FS 1pkhA 19 :IK T0287 113 :FDRSIL 1pkhA 22 :FNKDFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11493 # 1tt8A.110.105 read from T0287.t2k.many.frag # found chain 1tt8A in training set T0287 110 :FSKFDRSIL 1tt8A 106 :LQKLGKTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11494 # 1qlmA.110.275 read from T0287.t2k.many.frag # found chain 1qlmA in template set T0287 110 :FSKFDRSIL 1qlmA 276 :FYKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11495 # 1tjvA.110.406 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 110 :FSKFDRSIL 1tjvA 407 :INKLSLEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11496 # 1w4sA.110.116 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)I117 (1w4sA)D1053 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1w4sA 1046 :PENFRDE T0287 118 :L 1w4sA 1054 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11498 # 1e4cP.110.46 read from T0287.t2k.many.frag # found chain 1e4cP in training set T0287 110 :FSKFDRSIL 1e4cP 47 :YEKLTESHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11499 # 1kg0C.110.55 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)I117 (1kg0C)I148 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 T0287 110 :FSKFDRS 1kg0C 141 :FYGPTPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11500 # 1eokA.110.25 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)D114 (1eokA)P30 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKF 1eokA 26 :LKDI T0287 115 :RSIL 1eokA 31 :DKVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11502 # 1xruA.110.41 read from T0287.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. T0287 110 :FSKF 1xruA 39 :YSHI T0287 115 :RSIL 1xruA 44 :RIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11504 # 1pea.110.307 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 110 :FSKFDRSIL 1pea 308 :VEDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11505 # 1qxmA.110.189 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)S111 (1qxmA)Q177 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 110 :F 1qxmA 176 :W T0287 112 :KF 1qxmA 178 :WF T0287 115 :RSIL 1qxmA 181 :SSRQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=11508 # 1l8bA.110.114 read from T0287.t2k.many.frag # found chain 1l8bA in training set T0287 110 :FSKFDRSIL 1l8bA 142 :FDDYSDDVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11509 # 1rqpA.110.174 read from T0287.t2k.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 110 :FSKF 1rqpA 175 :LSEV T0287 115 :RSIL 1rqpA 180 :RPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11511 # 1ut7A.110.53 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RSIL 1ut7A 56 :PWVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11513 # 1g4mA.110.306 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 110 :FS 1g4mA 307 :RE T0287 113 :FDRSIL 1g4mA 310 :ANREIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11515 # 1vefA.110.361 read from T0287.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FSKF 1vefA 362 :ALQA T0287 115 :RSIL 1vefA 367 :PTVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11517 # 1sbxA.110.63 read from T0287.t2k.many.frag # found chain 1sbxA in training set T0287 110 :FSKFDRSIL 1sbxA 150 :CSRCTADQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11518 # 1hs6A.110.483 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)K492 T0287 110 :FSKF 1hs6A 483 :LNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 2 total=11520 # 1uehA.110.168 read from T0287.t2k.many.frag # found chain 1uehA in training set T0287 110 :FSKFDRSIL 1uehA 169 :PDQIDEEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=11521 # 1w23A.110.322 read from T0287.t2k.many.frag # found chain 1w23A in training set T0287 110 :FSKFDRSIL 1w23A 323 :GLNGHRSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11522 # 1g9gA.110.99 read from T0287.t2k.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)D114 (1g9gA)D104 because D (zeta) conformation "forbidden" or filtered. T0287 110 :FSKF 1g9gA 100 :MSRY T0287 115 :RSIL 1g9gA 105 :ANKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11524 # 1nkr.110.66 read from T0287.t2k.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)K112 (1nkr)R68 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1nkr)L73 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FS 1nkr 66 :IS T0287 113 :FDRS 1nkr 69 :MTQD T0287 118 :L 1nkr 74 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=11527 # 1ox0A.111.112 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)K112 (1ox0A)A95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 111 :S 1ox0A 94 :E T0287 115 :RSILG 1ox0A 98 :RDRFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11529 # 1qw9A.111.16 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=11530 # 1oygA.111.39 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)S111 (1oygA)P66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oygA)E67 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 T0287 113 :FDRSIL 1oygA 68 :FDSSTI Number of specific fragments extracted= 1 number of extra gaps= 2 total=11531 # 1yw4A.111.247 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1yw4A 248 :PDLDEDKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11532 # 1zvdA.111.246 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 111 :SKFDRSILG 1zvdA 615 :KTFDEKELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11533 # 1h2wA.111.318 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)D114 (1h2wA)E322 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SKF 1h2wA 319 :TDP T0287 115 :RSILG 1h2wA 323 :ESKWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11535 # 1t4bA.111.215 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKF 1t4bA 216 :DNF T0287 115 :RSILG 1t4bA 220 :VPLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11537 # 1srvA.111.118 read from T0287.t2k.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKF 1srvA 310 :ENA T0287 115 :RSILG 1srvA 314 :LSMLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11539 # 1tt8A.111.106 read from T0287.t2k.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKF 1tt8A 107 :QKL T0287 115 :RSILG 1tt8A 111 :KTPLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11541 # 1xruA.111.42 read from T0287.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1xruA)I45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFD 1xruA 40 :SHID T0287 117 :IL 1xruA 46 :IV Number of specific fragments extracted= 2 number of extra gaps= 2 total=11543 # 1g4mA.111.307 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 111 :S 1g4mA 308 :E T0287 113 :FDRSILG 1g4mA 310 :ANREILG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11545 # 1w4sA.111.117 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)G119 (1w4sA)Y1055 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1w4sA 1047 :ENFRDEDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11546 # 1kg0C.111.56 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 111 :SKFDRSI 1kg0C 142 :YGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11547 # 1vefA.111.362 read from T0287.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKF 1vefA 363 :LQA T0287 115 :RSILG 1vefA 367 :PTVIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11549 # 1l8bA.111.115 read from T0287.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)S111 (1l8bA)D143 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1l8bA)Y145 because G (3-10) conformation "forbidden" or filtered. T0287 112 :K 1l8bA 144 :D T0287 114 :DRSILG 1l8bA 146 :SDDVCG Number of specific fragments extracted= 2 number of extra gaps= 2 total=11551 # 1qxmA.111.190 read from T0287.t2k.many.frag # found chain 1qxmA in training set T0287 111 :SKFDRSILG 1qxmA 177 :QWFDSSRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11552 # 1ut7A.111.54 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 Warning: unaligning (T0287)I117 (1ut7A)V58 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SK 1ut7A 52 :YK T0287 115 :RS 1ut7A 56 :PW T0287 118 :LG 1ut7A 59 :LP Number of specific fragments extracted= 3 number of extra gaps= 2 total=11555 # 1tjvA.111.407 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 111 :SKFDRSILG 1tjvA 408 :NKLSLEDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11556 # 1w23A.111.323 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1w23A)V330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKF 1w23A 324 :LNG T0287 115 :RS 1w23A 328 :RS T0287 119 :G 1w23A 332 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=11559 # 1pkhA.111.19 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 111 :S 1pkhA 20 :K T0287 113 :FDRSILG 1pkhA 22 :FNKDFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11561 # 1qlmA.111.276 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)G119 (1qlmA)A285 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1qlmA 277 :YKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=11562 # 1e4cP.111.47 read from T0287.t2k.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)G119 (1e4cP)V56 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1e4cP 48 :EKLTESHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11563 # 1nkr.111.67 read from T0287.t2k.many.frag # found chain 1nkr in training set T0287 111 :SKFDRSILG 1nkr 67 :SRMTQDLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11564 # 2a3nA.111.262 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKF 2a3nA 251 :ELL T0287 115 :RSILG 2a3nA 255 :KDVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11566 # 1g9gA.111.100 read from T0287.t2k.many.frag # found chain 1g9gA in template set T0287 111 :SKFDRSILG 1g9gA 101 :SRYDANKPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11567 # 1eokA.111.26 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)R115 (1eokA)D31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKFD 1eokA 27 :KDIP T0287 117 :ILG 1eokA 33 :VDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=11569 # 1ogoX.111.139 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKFDR 1ogoX 140 :SQSDD T0287 117 :ILG 1ogoX 146 :GIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11571 # 1ig0A.111.178 read from T0287.t2k.many.frag # found chain 1ig0A in training set T0287 111 :SKFDRSILG 1ig0A 179 :SKVTPISLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11572 # 1pe9A.111.289 read from T0287.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 111 :S 1pe9A 290 :A T0287 113 :FDRSILG 1pe9A 292 :LSASKAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=11574 # 1pea.111.308 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 111 :SKFDRSILG 1pea 309 :EDVQRHLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11575 # 1ox0A.112.113 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)G119 (1ox0A)G102 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :K 1ox0A 95 :A T0287 115 :RSIL 1ox0A 98 :RDRF T0287 120 :I 1ox0A 103 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=11578 # 1qw9A.112.17 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 2 total=11579 # 1yw4A.112.248 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :FDRSILGI 1yw4A 250 :LDEDKLPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11580 # 1h2wA.112.319 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)I117 (1h2wA)K325 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KFDRS 1h2wA 320 :DPEES T0287 118 :LGI 1h2wA 326 :WKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11582 # 1zvdA.112.247 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 112 :KFDRSILGI 1zvdA 616 :TFDEKELEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11583 # 1xruA.112.43 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 112 :KFDRSILGI 1xruA 41 :HIDRIIVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11584 # 1oygA.112.40 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)N75 T0287 112 :KFDRSIL 1oygA 67 :EFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11585 # 1t4bA.112.216 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)S116 (1t4bA)P221 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KFDR 1t4bA 217 :NFGV T0287 117 :ILGI 1t4bA 222 :LAGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11587 # 1g4mA.112.308 read from T0287.t2k.many.frag # found chain 1g4mA in template set T0287 112 :KFDRSILGI 1g4mA 309 :GANREILGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11588 # 1vefA.112.363 read from T0287.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)K112 (1vefA)Q364 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1vefA 365 :AGPTVI T0287 120 :I 1vefA 372 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=11590 # 1srvA.112.119 read from T0287.t2k.many.frag # found chain 1srvA in template set T0287 112 :KFDRSILGI 1srvA 311 :NATLSMLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11591 # 1tt8A.112.107 read from T0287.t2k.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1tt8A)G115 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KF 1tt8A 108 :KL T0287 115 :RSIL 1tt8A 111 :KTPL T0287 120 :I 1tt8A 116 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=11594 # 1l8bA.112.116 read from T0287.t2k.many.frag # found chain 1l8bA in training set T0287 112 :KFDRSILGI 1l8bA 144 :DYSDDVCGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11595 # 3cla.112.132 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 3cla 139 :VTPENHL T0287 120 :I 3cla 147 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=11597 # 1qxmA.112.191 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)F113 (1qxmA)F179 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1qxmA)S181 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :K 1qxmA 178 :W T0287 116 :SILGI 1qxmA 182 :SRQKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=11599 # 1chd.112.123 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1chd)R273 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KF 1chd 270 :HA T0287 116 :SILGI 1chd 274 :NAVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11601 # 1ogoX.112.140 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)R115 (1ogoX)D144 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 112 :KFD 1ogoX 141 :QSD T0287 117 :ILGI 1ogoX 146 :GIVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11603 # 1kg0C.112.57 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)K112 (1kg0C)G143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :FDRSI 1kg0C 144 :PTPDI T0287 120 :I 1kg0C 151 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=11605 # 1w4sA.112.118 read from T0287.t2k.many.frag # found chain 1w4sA in template set T0287 112 :KFDRSILGI 1w4sA 1048 :NFRDEDVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11606 # 2fckA.112.128 read from T0287.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 112 :KFDRSIL 2fckA 126 :RLELTRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11607 # 1w23A.112.324 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :F 1w23A 326 :G T0287 115 :RSILGI 1w23A 328 :RSVGGC Number of specific fragments extracted= 2 number of extra gaps= 2 total=11609 # 2a3nA.112.263 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KF 2a3nA 252 :LL T0287 115 :RSILGI 2a3nA 255 :KDVPLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11611 # 1qs1A.112.198 read from T0287.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)G119 (1qs1A)K206 because D (zeta) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1qs1A 199 :SKERVIL T0287 120 :I 1qs1A 207 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11613 # 2be1A.112.227 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 112 :KFDR 2be1A 338 :DLDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=11614 # 1wl8A.112.69 read from T0287.t2k.many.frag # found chain 1wl8A in template set Warning: unaligning (T0287)G119 (1wl8A)G77 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1wl8A 70 :EFNVPIL T0287 120 :I 1wl8A 78 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=11616 # 1ut7A.112.55 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 112 :K 1ut7A 53 :K T0287 115 :RSILGI 1ut7A 56 :PWVLPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11618 # 1nkr.112.68 read from T0287.t2k.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)D114 (1nkr)T70 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 1nkr 68 :RM T0287 115 :RSILGI 1nkr 71 :QDLAGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11620 # 1wd3A.112.26 read from T0287.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0287)S116 (1wd3A)A48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1wd3A)Y50 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KFDR 1wd3A 44 :SFSG T0287 117 :I 1wd3A 49 :L T0287 119 :GI 1wd3A 51 :QL Number of specific fragments extracted= 3 number of extra gaps= 2 total=11623 # 1as4B.112.7 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1as4B 365 :RFNRPFL T0287 120 :I 1as4B 373 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=11625 # 2bw3A.112.110 read from T0287.t2k.many.frag # found chain 2bw3A in template set Warning: unaligning (T0287)D114 (2bw3A)K188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2bw3A)G193 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KF 2bw3A 186 :YI T0287 115 :RSIL 2bw3A 189 :RNFL T0287 120 :I 2bw3A 194 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=11628 # 1ox0A.113.114 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)I117 (1ox0A)R100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1ox0A)G102 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RS 1ox0A 98 :RD T0287 118 :L 1ox0A 101 :F T0287 120 :IF 1ox0A 103 :VI Number of specific fragments extracted= 3 number of extra gaps= 3 total=11631 # 1qw9A.113.18 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=11632 # 1yw4A.113.249 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1yw4A 250 :LDEDKL T0287 120 :IF 1yw4A 257 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11634 # 1h2wA.113.320 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)D114 (1h2wA)E322 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :F 1h2wA 321 :P T0287 115 :RSIL 1h2wA 323 :ESKW T0287 120 :IF 1h2wA 328 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=11637 # 3cla.113.133 read from T0287.t2k.many.frag # found chain 3cla in training set T0287 113 :FDRSILGIF 3cla 140 :TPENHLNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11638 # 1seiA.113.53 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)F113 (1seiA)N54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1seiA)G57 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :R 1seiA 56 :Q T0287 117 :ILGIF 1seiA 58 :ILRIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=11640 # 1ogoX.113.141 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1ogoX 142 :SDDGGI T0287 120 :IF 1ogoX 149 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11642 # 1chd.113.124 read from T0287.t2k.many.frag # found chain 1chd in training set T0287 113 :FDRSILGIF 1chd 271 :AGRNAVGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11643 # 1g4mA.113.309 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)D114 (1g4mA)N311 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1g4mA)I314 because G (3-10) conformation "forbidden" or filtered. T0287 113 :F 1g4mA 310 :A T0287 115 :RS 1g4mA 312 :RE T0287 118 :LGIF 1g4mA 315 :LGII Number of specific fragments extracted= 3 number of extra gaps= 2 total=11646 # 1vefA.113.364 read from T0287.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :F 1vefA 365 :A T0287 115 :RSIL 1vefA 367 :PTVI T0287 120 :IF 1vefA 372 :FL Number of specific fragments extracted= 3 number of extra gaps= 2 total=11649 # 1xruA.113.44 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 113 :FDRSILGIF 1xruA 42 :IDRIIVGGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11650 # 1qxmA.113.192 read from T0287.t2k.many.frag # found chain 1qxmA in training set T0287 113 :FDRSILGIF 1qxmA 179 :FDSSRQKWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11651 # 1l8bA.113.117 read from T0287.t2k.many.frag # found chain 1l8bA in training set T0287 113 :FDRSILGIF 1l8bA 145 :YSDDVCGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11652 # 1srvA.113.120 read from T0287.t2k.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)G119 (1srvA)G318 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1srvA 312 :ATLSML T0287 120 :IF 1srvA 319 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11654 # 1t4bA.113.217 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 113 :FDRSILGIF 1t4bA 218 :FGVPLAGSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11655 # 1crzA.113.225 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :FD 1crzA 232 :PD T0287 116 :SILGIF 1crzA 235 :SKLAFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11657 # 2fckA.113.129 read from T0287.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)D114 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 113 :F 2fckA 127 :L T0287 115 :RSIL 2fckA 129 :LTRL T0287 121 :F 2fckA 135 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=11660 # 1kg0C.113.58 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :FDRSI 1kg0C 144 :PTPDI T0287 120 :IF 1kg0C 151 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11662 # 1tt8A.113.108 read from T0287.t2k.many.frag # found chain 1tt8A in training set T0287 113 :FDRSILGIF 1tt8A 109 :LGKTPLGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11663 # 2a3nA.113.264 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 113 :F 2a3nA 253 :L T0287 115 :RSILGIF 2a3nA 255 :KDVPLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11665 # 1zvdA.113.248 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 113 :FDRSILGIF 1zvdA 617 :FDEKELELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11666 # 1as4B.113.8 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)S116 (1as4B)P369 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDR 1as4B 366 :FNR T0287 117 :ILGIF 1as4B 370 :FLMII Number of specific fragments extracted= 2 number of extra gaps= 1 total=11668 # 1w23A.113.325 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1w23A)V330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :F 1w23A 326 :G T0287 115 :RS 1w23A 328 :RS T0287 119 :GIF 1w23A 332 :GCR Number of specific fragments extracted= 3 number of extra gaps= 2 total=11671 # 2be1A.113.228 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 113 :FDR 2be1A 339 :LDF T0287 121 :F 2be1A 347 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11673 # 1u7iA.113.46 read from T0287.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0287)D114 (1u7iA)E46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1u7iA)G47 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :F 1u7iA 45 :P T0287 116 :SILGIF 1u7iA 48 :SVLKAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11675 # 1qs1A.113.199 read from T0287.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)G119 (1qs1A)K206 because D (zeta) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1qs1A 200 :KERVIL T0287 120 :IF 1qs1A 207 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11677 # 1n7zA.113.80 read from T0287.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0287)I117 (1n7zA)M85 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FDRS 1n7zA 81 :VLPS T0287 118 :LGIF 1n7zA 86 :LDAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11679 # 1w4sA.113.119 read from T0287.t2k.many.frag # found chain 1w4sA in template set T0287 113 :FDRSILGIF 1w4sA 1049 :FRDEDVYVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11680 # 1lm8V.113.26 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)R115 (1lm8V)R82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FD 1lm8V 80 :SP T0287 116 :SIL 1lm8V 83 :VVL T0287 120 :IF 1lm8V 87 :VW Number of specific fragments extracted= 3 number of extra gaps= 2 total=11683 # 1w66A.113.127 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1w66A)V127 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :ILGIF 1w66A 130 :RSGVW Number of specific fragments extracted= 2 number of extra gaps= 2 total=11685 # 1h2wA.114.321 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 114 :DRSILGIFL 1h2wA 322 :EESKWKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11686 # 1ox0A.114.115 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 115 :RSILGIFL 1ox0A 98 :RDRFGVIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11687 # 1qw9A.114.19 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 114 :DRSILG 1qw9A 20 :DKRIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=11689 # 1seiA.114.54 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1seiA 56 :QGILRIFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11690 # 1w66A.114.128 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 T0287 115 :RSILGIFL 1w66A 128 :DGRSGVWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11691 # 1ogoX.114.142 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)R115 (1ogoX)D144 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1ogoX 143 :D T0287 117 :ILGIFL 1ogoX 146 :GIVIRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11693 # 3cla.114.134 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 3cla 141 :PENHL T0287 120 :IFL 3cla 147 :ISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11695 # 1yw4A.114.250 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :DRSIL 1yw4A 251 :DEDKL T0287 120 :IFL 1yw4A 257 :LFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11697 # 1chd.114.125 read from T0287.t2k.many.frag # found chain 1chd in training set T0287 114 :DRSILGIFL 1chd 272 :GRNAVGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11698 # 1crzA.114.226 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1crzA 233 :D T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11700 # 1g4mA.114.310 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)I117 (1g4mA)I314 because G (3-10) conformation "forbidden" or filtered. T0287 114 :DRS 1g4mA 311 :NRE T0287 118 :LGIFL 1g4mA 315 :LGIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11702 # 1l8bA.114.118 read from T0287.t2k.many.frag # found chain 1l8bA in training set T0287 114 :DRSILGIFL 1l8bA 146 :SDDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11703 # 1t4bA.114.218 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1t4bA 220 :VPLAGSLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11704 # 1xruA.114.45 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 114 :DRSILGIFL 1xruA 43 :DRIIVGGIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11705 # 1vefA.114.365 read from T0287.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1vefA 367 :PTVIRFLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11706 # 1wurA.114.80 read from T0287.t2k.many.frag # found chain 1wurA in template set T0287 114 :DRSILGIFL 1wurA 81 :EEVVGGAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11707 # 1qxmA.114.193 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1qxmA)S181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1qxmA)K185 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1qxmA 182 :SRQ T0287 120 :IFL 1qxmA 186 :WII Number of specific fragments extracted= 2 number of extra gaps= 2 total=11709 # 2be1A.114.129 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)G119 (2be1A)S245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 T0287 114 :DRSIL 2be1A 240 :NGEII T0287 120 :IF 2be1A 246 :AF Number of specific fragments extracted= 2 number of extra gaps= 2 total=11711 # 1kg0C.114.59 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 114 :DRSI 1kg0C 145 :TPDI T0287 120 :IFL 1kg0C 151 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11713 # 2asbA.114.22 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)S116 (2asbA)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DR 2asbA 127 :AR T0287 117 :ILGIF 2asbA 130 :LVVVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=11715 # 1u7iA.114.47 read from T0287.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0287)R115 (1u7iA)G47 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1u7iA 46 :E T0287 116 :SILGIFL 1u7iA 48 :SVLKALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11717 # 1as4B.114.9 read from T0287.t2k.many.frag # found chain 1as4B in template set T0287 114 :DRSILGIFL 1as4B 367 :NRPFLMIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11718 # 1oewA.114.243 read from T0287.t2k.many.frag # found chain 1oewA in training set T0287 114 :DRSILGIFL 1oewA 244 :SSSVGGYVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11719 # 1w23A.114.326 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1w23A)V330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 115 :RS 1w23A 328 :RS T0287 119 :GIFL 1w23A 332 :GCRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=11721 # 2a3nA.114.265 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSILGIFL 2a3nA 255 :KDVPLILV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11722 # 2be1A.114.229 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)R115 (2be1A)F341 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 114 :D 2be1A 340 :D T0287 116 :S 2be1A 342 :R T0287 121 :FL 2be1A 347 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=11725 # 1lm8V.114.27 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)S116 (1lm8V)V83 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :DR 1lm8V 81 :PR T0287 117 :ILGIFL 1lm8V 84 :VLPVWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11727 # 2f6kA.114.114 read from T0287.t2k.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2f6kA)G120 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DR 2f6kA 115 :QD T0287 117 :IL 2f6kA 118 :AL T0287 120 :IFL 2f6kA 121 :VTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=11730 # 1my7A.114.29 read from T0287.t2k.many.frag # found chain 1my7A in training set Warning: unaligning (T0287)G119 (1my7A)E225 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSIL 1my7A 220 :QKEDI T0287 120 :IFL 1my7A 226 :VYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11732 # 1n7zA.114.81 read from T0287.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0287)D114 (1n7zA)L82 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1n7zA 83 :PSMLDAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11733 # 1h2wA.115.322 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 115 :RSILGIFLP 1h2wA 323 :ESKWKVLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11734 # 1w66A.115.129 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :IL 1w66A 130 :RS T0287 120 :IFLP 1w66A 133 :VWLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=11737 # 1qw9A.115.20 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 T0287 115 :RSILG 1qw9A 21 :KRIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=11739 # 1seiA.115.55 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)S116 (1seiA)G57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :R 1seiA 56 :Q T0287 117 :ILGIFL 1seiA 58 :ILRIFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=11741 # 1ogoX.115.143 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :R 1ogoX 144 :D T0287 117 :IL 1ogoX 146 :GI T0287 120 :IFLP 1ogoX 149 :IRVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=11744 # 3cla.115.135 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 3cla 142 :ENHLNISA Number of specific fragments extracted= 1 number of extra gaps= 1 total=11745 # 1t4bA.115.219 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 115 :RSILGIFLP 1t4bA 220 :VPLAGSLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11746 # 1crzA.115.227 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 T0287 115 :RSILGIFL 1crzA 234 :GSKLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11747 # 1ox0A.115.116 read from T0287.t2k.many.frag # found chain 1ox0A in training set T0287 115 :RSILGIFLP 1ox0A 98 :RDRFGVIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11748 # 1oewA.115.244 read from T0287.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :RSI 1oewA 245 :SSV T0287 119 :GIFLP 1oewA 249 :GYVFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11750 # 1wurA.115.81 read from T0287.t2k.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 115 :RSI 1wurA 82 :EVV T0287 119 :GIFLP 1wurA 86 :GAVFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11752 # 1chd.115.126 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1chd 273 :RNAV T0287 120 :IFLP 1chd 278 :VILT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11754 # 1t1uA.115.165 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)R115 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)R167 Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLP 1t1uA 170 :SSYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11755 # 2be1A.115.130 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 T0287 115 :RSILGIF 2be1A 241 :GEIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=11756 # 1g4mA.115.311 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)I117 (1g4mA)I314 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1g4mA)S320 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RS 1g4mA 312 :RE T0287 118 :LGIFL 1g4mA 315 :LGIIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=11758 # 1yw4A.115.251 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSIL 1yw4A 252 :EDKL T0287 120 :IFLP 1yw4A 257 :LFRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11760 # 2asbA.115.23 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)G119 (2asbA)V132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSIL 2asbA 128 :RGLV T0287 120 :IFL 2asbA 133 :VRI Number of specific fragments extracted= 2 number of extra gaps= 2 total=11762 # 1as4B.115.10 read from T0287.t2k.many.frag # found chain 1as4B in template set T0287 115 :RSILGIFLP 1as4B 368 :RPFLMIIVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11763 # 1jo0A.115.78 read from T0287.t2k.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)R115 (1jo0A)G80 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1jo0A 81 :HIL T0287 120 :IFLP 1jo0A 85 :LYRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=11765 # 1wdaA.115.582 read from T0287.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)R115 (1wdaA)F576 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SILGI 1wdaA 577 :SKAEA T0287 123 :P 1wdaA 584 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=11767 # 1l8bA.115.119 read from T0287.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)P123 (1l8bA)N155 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1l8bA 147 :DDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11768 # 1l1dA.115.43 read from T0287.t2k.many.frag # found chain 1l1dA in template set Warning: unaligning (T0287)G119 (1l1dA)G418 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSIL 1l1dA 414 :LFKP T0287 120 :IFLP 1l1dA 419 :IYVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11770 # 1kaeA.115.123 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 115 :RSILGIFLP 1kaeA 124 :VASVGLYIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11771 # 1xruA.115.46 read from T0287.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. T0287 116 :SILGIFLP 1xruA 45 :IIVGGIMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11772 # 1t61A.115.157 read from T0287.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)G119 (1t61A)G162 because H (helix) conformation "forbidden" or filtered. T0287 115 :RSIL 1t61A 158 :LASP T0287 120 :IFLP 1t61A 163 :SCLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11774 # 2bzvA.115.66 read from T0287.t2k.many.frag # found chain 2bzvA in template set T0287 115 :RSILGIFLP 2bzvA 281 :DNALSLKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11775 # 1lm8V.115.28 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSIL 1lm8V 82 :RVVL T0287 120 :IFLP 1lm8V 87 :VWLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11777 # 2be1A.115.230 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 115 :RS 2be1A 341 :FR T0287 121 :FLP 2be1A 347 :VSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11779 # 1vefA.115.366 read from T0287.t2k.many.frag # found chain 1vefA in template set T0287 115 :RSILGIFLP 1vefA 367 :PTVIRFLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11780 # 2f6kA.115.115 read from T0287.t2k.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. T0287 115 :R 2f6kA 116 :D T0287 117 :ILGIFLP 2f6kA 118 :ALGVTVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11782 # 1h2wA.116.323 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 116 :SILGIFLPF 1h2wA 324 :SKWKVLVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11783 # 1w66A.116.130 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 117 :IL 1w66A 130 :RS T0287 120 :IFLPF 1w66A 133 :VWLPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=11785 # 1seiA.116.56 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)S116 (1seiA)G57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1seiA 58 :IL T0287 120 :IFL 1seiA 61 :IFL T0287 124 :F 1seiA 65 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=11788 # 1qw9A.116.21 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 116 :SILG 1qw9A 22 :RIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=11790 # 1ogoX.116.144 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1ogoX 145 :GGI T0287 120 :IFLPF 1ogoX 149 :IRVPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11792 # 1t4bA.116.220 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 116 :SILGIFLPF 1t4bA 221 :PLAGSLIPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11793 # 1wurA.116.82 read from T0287.t2k.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 116 :SI 1wurA 83 :VV T0287 119 :GIFLPF 1wurA 86 :GAVFPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11795 # 3cla.116.136 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 116 :SILGIFL 3cla 143 :NHLNISA T0287 124 :F 3cla 151 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=11797 # 1t1uA.116.166 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLPF 1t1uA 170 :SSYRLPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=11798 # 1crzA.116.228 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 T0287 116 :SIL 1crzA 235 :SKL T0287 120 :IFL 1crzA 239 :FAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=11800 # 1as4B.116.11 read from T0287.t2k.many.frag # found chain 1as4B in template set T0287 116 :SILGIFLPF 1as4B 369 :PFLMIIVPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11801 # 1chd.116.127 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1chd 274 :NAV T0287 120 :IFLPF 1chd 278 :VILTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11803 # 1oewA.116.245 read from T0287.t2k.many.frag # found chain 1oewA in training set T0287 116 :SILGIFLPF 1oewA 246 :SVGGYVFPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11804 # 1kaeA.116.124 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 116 :SILGIFLPF 1kaeA 125 :ASVGLYIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11805 # 2be1A.116.131 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)G119 (2be1A)S245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 T0287 116 :SIL 2be1A 242 :EII T0287 120 :IF 2be1A 246 :AF Number of specific fragments extracted= 2 number of extra gaps= 2 total=11807 # 1jo0A.116.79 read from T0287.t2k.many.frag # found chain 1jo0A in training set T0287 116 :SILGIFLPF 1jo0A 81 :HILVLYRPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11808 # 3eipA.116.52 read from T0287.t2k.many.frag # found chain 3eipA in training set T0287 116 :SILGIFLPF 3eipA 53 :EWVPLLQPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11809 # 1xruA.116.47 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 116 :SILGIFLPF 1xruA 45 :IIVGGIMPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11810 # 1wdaA.116.583 read from T0287.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SILGI 1wdaA 577 :SKAEA T0287 123 :PF 1wdaA 584 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11812 # 1g9gA.116.105 read from T0287.t2k.many.frag # found chain 1g9gA in template set T0287 116 :SILGIFLPF 1g9gA 106 :NKPATYAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11813 # 2be1A.116.231 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPF 2be1A 347 :VSPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=11814 # 1lm8V.116.29 read from T0287.t2k.many.frag # found chain 1lm8V in template set T0287 116 :SILGIFLPF 1lm8V 83 :VVLPVWLNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11815 # 1t61A.116.158 read from T0287.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)G119 (1t61A)G162 because H (helix) conformation "forbidden" or filtered. T0287 116 :SIL 1t61A 159 :ASP T0287 120 :IFLPF 1t61A 163 :SCLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11817 # 1cv8.116.134 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 116 :SIL 1cv8 135 :EVI T0287 120 :IFL 1cv8 139 :IWN Number of specific fragments extracted= 2 number of extra gaps= 2 total=11819 # 2bjqA.116.226 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)G230 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 2bjqA 227 :PVF T0287 120 :IF 2bjqA 231 :RA T0287 123 :PF 2bjqA 234 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=11822 # 2bzvA.116.67 read from T0287.t2k.many.frag # found chain 2bzvA in template set T0287 116 :SILGIFLPF 2bzvA 282 :NALSLKLPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11823 # 1l1dA.116.44 read from T0287.t2k.many.frag # found chain 1l1dA in template set T0287 116 :SILGIFLPF 1l1dA 415 :FKPGIYVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11824 # 1ewfA.116.200 read from T0287.t2k.many.frag # found chain 1ewfA in training set T0287 116 :SILGIFLPF 1ewfA 201 :SVAGINYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11825 # 1repC.116.133 read from T0287.t2k.many.frag # found chain 1repC in template set Warning: unaligning (T0287)I117 (1repC)L135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1repC)L142 because T (delta_L) conformation "forbidden" or filtered. T0287 116 :S 1repC 134 :Y T0287 118 :LGIFLP 1repC 136 :IPFFIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=11827 # 1t62A.116.68 read from T0287.t2k.many.frag # found chain 1t62A in template set T0287 116 :SILGIFLPF 1t62A 1069 :GQYDIILDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11828 # 1h2wA.117.324 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 117 :ILGIFLPFF 1h2wA 325 :KWKVLVPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11829 # 1w66A.117.131 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 117 :IL 1w66A 130 :RS T0287 120 :IFLPFF 1w66A 133 :VWLPGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11831 # 1seiA.117.57 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1seiA 58 :IL T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 3 number of extra gaps= 2 total=11834 # 1ogoX.117.145 read from T0287.t2k.many.frag # found chain 1ogoX in training set T0287 117 :ILGIFLPFF 1ogoX 146 :GIVIRVPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11835 # 1qw9A.117.22 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 117 :ILG 1qw9A 23 :IYG T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=11838 # 1t1uA.117.167 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLPFF 1t1uA 170 :SSYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=11839 # 1as4B.117.12 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1as4B 370 :FL T0287 120 :IFLPFF 1as4B 373 :IIVPTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11841 # 3cla.117.137 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 117 :ILGIFL 3cla 144 :HLNISA T0287 124 :FF 3cla 151 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=11843 # 1crzA.117.229 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 117 :ILGIFL 1crzA 236 :KLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11844 # 1kaeA.117.125 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 117 :ILGIFLPFF 1kaeA 126 :SVGLYIPGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11845 # 3eipA.117.53 read from T0287.t2k.many.frag # found chain 3eipA in training set T0287 117 :ILGIFLPFF 3eipA 54 :WVPLLQPYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11846 # 1jo0A.117.80 read from T0287.t2k.many.frag # found chain 1jo0A in training set T0287 117 :ILGIFLPFF 1jo0A 82 :ILVLYRPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11847 # 1chd.117.128 read from T0287.t2k.many.frag # found chain 1chd in training set T0287 117 :ILGIFLPFF 1chd 275 :AVGVILTGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11848 # 1t4bA.117.221 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)I120 (1t4bA)S225 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :ILG 1t4bA 222 :LAG T0287 121 :FLPFF 1t4bA 226 :LIPWI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11850 # 2be1A.117.132 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 T0287 117 :ILGIF 2be1A 243 :IISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=11851 # 1cv8.117.135 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 117 :IL 1cv8 136 :VI T0287 120 :IFL 1cv8 139 :IWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=11854 # 1g9gA.117.106 read from T0287.t2k.many.frag # found chain 1g9gA in template set T0287 117 :ILGIFLPFF 1g9gA 107 :KPATYAPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11855 # 1oewA.117.246 read from T0287.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1oewA)G249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :I 1oewA 247 :V T0287 120 :IF 1oewA 250 :YV T0287 123 :PFF 1oewA 253 :PCS Number of specific fragments extracted= 3 number of extra gaps= 2 total=11858 # 1f8eA.117.74 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 117 :IL 1f8eA 156 :RA T0287 120 :IF 1f8eA 159 :IS T0287 123 :PF 1f8eA 162 :PL Number of specific fragments extracted= 3 number of extra gaps= 3 total=11861 # 1t61A.117.159 read from T0287.t2k.many.frag # found chain 1t61A in training set T0287 117 :ILGIFLPFF 1t61A 160 :SPGSCLEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11862 # 1wurA.117.83 read from T0287.t2k.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 117 :I 1wurA 84 :V T0287 119 :GIFLPFF 1wurA 86 :GAVFPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11864 # 1wdaA.117.584 read from T0287.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 117 :ILGI 1wdaA 578 :KAEA T0287 123 :PFF 1wdaA 584 :PNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=11866 # 2bjqA.117.227 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :ILGIF 2bjqA 228 :VFGRA T0287 123 :PFF 2bjqA 234 :PDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11868 # 2be1A.117.232 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFF 2be1A 347 :VSPTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=11869 # 1t62A.117.69 read from T0287.t2k.many.frag # found chain 1t62A in template set T0287 117 :ILGIFLPFF 1t62A 1070 :QYDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11870 # 1xruA.117.48 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 117 :ILGIFLPFF 1xruA 46 :IVGGIMPIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11871 # 1lm8V.117.30 read from T0287.t2k.many.frag # found chain 1lm8V in template set T0287 117 :ILGIFLPFF 1lm8V 84 :VLPVWLNFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11872 # 2bzvA.117.68 read from T0287.t2k.many.frag # found chain 2bzvA in template set T0287 117 :ILGIFLPFF 2bzvA 283 :ALSLKLPFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11873 # 1f8eA.117.323 read from T0287.t2k.many.frag # found chain 1f8eA in training set T0287 117 :ILGIFLPFF 1f8eA 406 :YSGSFMDYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11874 # 1ttwA.117.35 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 T0287 117 :ILGIFLP 1ttwA 36 :WVVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11875 # 1h2wA.118.325 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1h2wA 326 :W T0287 120 :IFLPFFS 1h2wA 328 :VLVPEHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11877 # 1w66A.118.132 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1w66A 131 :SGVWLPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=11878 # 1seiA.118.58 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 T0287 118 :LGIFL 1seiA 59 :LRIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 2 total=11880 # 1ogoX.118.146 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1ogoX 147 :I T0287 120 :IFLPFFS 1ogoX 149 :IRVPADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11882 # 3eipA.118.54 read from T0287.t2k.many.frag # found chain 3eipA in training set Warning: unaligning (T0287)F124 (3eipA)Y61 because G (3-10) conformation "forbidden" or filtered. T0287 118 :LGIFLP 3eipA 55 :VPLLQP T0287 125 :FS 3eipA 62 :FN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11884 # 1as4B.118.13 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1as4B 371 :L T0287 120 :IFLPFFS 1as4B 373 :IIVPTDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11886 # 1crzA.118.230 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 118 :LGIFL 1crzA 237 :LAFAL T0287 126 :S 1crzA 245 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=11888 # 1t1uA.118.168 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 T0287 118 :L 1t1uA 170 :S T0287 120 :IFLPFF 1t1uA 172 :YRLPGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=11890 # 1kaeA.118.126 read from T0287.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1kaeA 127 :V T0287 120 :IFLPFFS 1kaeA 129 :LYIPGGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11892 # 1cv8.118.136 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 118 :LGIFL 1cv8 137 :IIIWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11894 # 1jo0A.118.81 read from T0287.t2k.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1jo0A 83 :L T0287 120 :IFLPFFS 1jo0A 85 :LYRPSEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11896 # 1qw9A.118.23 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 Warning: unaligning (T0287)S126 (1qw9A)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :LG 1qw9A 24 :YG T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=11899 # 1g9gA.118.107 read from T0287.t2k.many.frag # found chain 1g9gA in template set T0287 118 :LGIFLPFFS 1g9gA 108 :PATYAPEFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11900 # 3cla.118.138 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 118 :LGIFL 3cla 145 :LNISA T0287 124 :FFS 3cla 151 :PWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11902 # 1chd.118.129 read from T0287.t2k.many.frag # found chain 1chd in training set T0287 118 :LGIFLPFFS 1chd 276 :VGVILTGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11903 # 2be1A.118.133 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)G119 (2be1A)S245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 Warning: unaligning (T0287)S126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2be1A)K252 T0287 118 :L 2be1A 244 :I T0287 120 :IF 2be1A 246 :AF Number of specific fragments extracted= 2 number of extra gaps= 2 total=11905 # 1t4bA.118.222 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)S126 (1t4bA)D231 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1t4bA 223 :AGSLIPWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11906 # 1f8eA.118.75 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIF 1f8eA 158 :LIS T0287 123 :PF 1f8eA 162 :PL T0287 126 :S 1f8eA 165 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=11909 # 1t61A.118.160 read from T0287.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)G119 (1t61A)G162 because H (helix) conformation "forbidden" or filtered. T0287 118 :L 1t61A 161 :P T0287 120 :IFLPFFS 1t61A 163 :SCLEEFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11911 # 1t62A.118.70 read from T0287.t2k.many.frag # found chain 1t62A in template set T0287 118 :LGIFLPFFS 1t62A 1071 :YDIILDGQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11912 # 1y8xB.118.78 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIF 1y8xB 423 :LAVA T0287 123 :PFFS 1y8xB 428 :VTTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11914 # 1lm8V.118.31 read from T0287.t2k.many.frag # found chain 1lm8V in template set T0287 118 :LGIFLPFFS 1lm8V 85 :LPVWLNFDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11915 # 1flmA.118.15 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)G119 (1flmA)A17 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1flmA 16 :V T0287 120 :IFLPFFS 1flmA 18 :IATQGED Number of specific fragments extracted= 2 number of extra gaps= 1 total=11917 # 1sz2A.118.114 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 T0287 118 :LGIFLPFF 1sz2A 104 :VSMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=11918 # 1sqwA.118.85 read from T0287.t2k.many.frag # found chain 1sqwA in template set T0287 118 :LGIFLPFFS 1sqwA 86 :LDYLAPYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11919 # 1ttwA.118.36 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)G119 (1ttwA)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 T0287 118 :L 1ttwA 37 :V T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=11921 # 2be1A.118.233 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFFS 2be1A 347 :VSPTFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11922 # 2fhpA.118.35 read from T0287.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0287)P123 (2fhpA)P38 because C (cis) conformation "forbidden" or filtered. T0287 118 :LGIFL 2fhpA 33 :FNMIG T0287 124 :FFS 2fhpA 39 :YFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11924 # 1repC.118.135 read from T0287.t2k.many.frag # found chain 1repC in template set T0287 118 :LGIFLPFFS 1repC 136 :IPFFIGLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11925 # 2asbA.118.26 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIF 2asbA 131 :VVVR T0287 124 :F 2asbA 137 :T T0287 126 :S 2asbA 139 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=11928 # 1h2wA.119.326 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 119 :GIFLPFFSK 1h2wA 327 :KVLVPEHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11929 # 1w66A.119.133 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1w66A 133 :VWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=11931 # 1ogoX.119.147 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ogoX 149 :IRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11932 # 1crzA.119.231 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 119 :GIFL 1crzA 238 :AFAL T0287 126 :SK 1crzA 245 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11934 # 3eipA.119.55 read from T0287.t2k.many.frag # found chain 3eipA in training set T0287 119 :GIFLPFFSK 3eipA 56 :PLLQPYFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11935 # 1seiA.119.59 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 119 :GIFL 1seiA 60 :RIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 2 total=11937 # 1as4B.119.14 read from T0287.t2k.many.frag # found chain 1as4B in template set T0287 119 :GIFLPFFSK 1as4B 372 :MIIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11938 # 1t1uA.119.169 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 119 :GIFLPFF 1t1uA 171 :SYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=11939 # 1cv8.119.137 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFL 1cv8 138 :IIWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 2 number of extra gaps= 2 total=11941 # 1y8xB.119.79 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIF 1y8xB 424 :AVA T0287 123 :PFFSK 1y8xB 428 :VTTPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=11943 # 1kaeA.119.127 read from T0287.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1kaeA)A136 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFLPF 1kaeA 129 :LYIPG T0287 126 :S 1kaeA 135 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=11945 # 1flmA.119.16 read from T0287.t2k.many.frag # found chain 1flmA in training set T0287 119 :GIFLPFFSK 1flmA 17 :AIATQGEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11946 # 1f8eA.119.76 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1f8eA)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IF 1f8eA 159 :IS T0287 123 :PFFS 1f8eA 162 :PLSS Number of specific fragments extracted= 2 number of extra gaps= 3 total=11948 # 1jo0A.119.82 read from T0287.t2k.many.frag # found chain 1jo0A in training set T0287 119 :GIFLPFFSK 1jo0A 84 :VLYRPSEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11949 # 2asbA.119.27 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)G119 (2asbA)V132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFL 2asbA 133 :VRI T0287 124 :FFSK 2asbA 137 :TETK Number of specific fragments extracted= 2 number of extra gaps= 2 total=11951 # 1t62A.119.71 read from T0287.t2k.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)F125 (1t62A)Q1078 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0287 119 :GIFLPF 1t62A 1072 :DIILDG T0287 127 :K 1t62A 1080 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=11953 # 1sz2A.119.115 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 119 :GIFLPFF 1sz2A 105 :SMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=11954 # 1ttwA.119.37 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)G119 (1ttwA)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 2 total=11955 # 1lm8V.119.32 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1lm8V 87 :VWLNFDGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11956 # 1mpxA.119.461 read from T0287.t2k.many.frag # found chain 1mpxA in template set T0287 119 :GIFLPFFSK 1mpxA 484 :TFVTEPLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11957 # 1hynP.119.230 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)G119 (1hynP)V231 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1hynP 232 :GRADFLE Number of specific fragments extracted= 1 number of extra gaps= 2 total=11958 # 1g9gA.119.108 read from T0287.t2k.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1g9gA 110 :TYAPEFQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11959 # 1chd.119.130 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)S126 (1chd)G284 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1chd 277 :GVILTGM T0287 127 :K 1chd 285 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=11961 # 2bzvA.119.70 read from T0287.t2k.many.frag # found chain 2bzvA in template set T0287 119 :GIFLPFFSK 2bzvA 285 :SLKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11962 # 1qg3A.119.19 read from T0287.t2k.many.frag # found chain 1qg3A in template set Warning: unaligning (T0287)S126 (1qg3A)G1152 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1qg3A 1145 :FNWLPPS T0287 127 :K 1qg3A 1153 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=11964 # 1io0A.119.124 read from T0287.t2k.many.frag # found chain 1io0A in training set Warning: unaligning (T0287)K127 (1io0A)Q292 because E (beta_S) conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1io0A 284 :ELRIDNQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=11965 # 3cla.119.139 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 119 :GIFL 3cla 146 :NISA T0287 124 :FFSK 3cla 151 :PWVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11967 # 2bjqA.119.33 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)V34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :FF 2bjqA 39 :KF T0287 127 :K 2bjqA 42 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=11970 # 1oltA.119.55 read from T0287.t2k.many.frag # found chain 1oltA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)K64 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)K64 T0287 119 :GIFLPFF 1oltA 56 :YVHIPFC Number of specific fragments extracted= 1 number of extra gaps= 1 total=11971 # 1t61A.119.161 read from T0287.t2k.many.frag # found chain 1t61A in training set T0287 119 :GIFLPFFSK 1t61A 162 :GSCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11972 # 1h2wA.120.327 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 120 :IFLPFFSKP 1h2wA 328 :VLVPEHEKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11973 # 1ttwA.120.38 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11974 # 1crzA.120.232 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 121 :FL 1crzA 240 :AL T0287 126 :SKP 1crzA 245 :GSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=11976 # 1flmA.120.17 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1flmA 18 :IATQGED T0287 128 :P 1flmA 26 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=11978 # 1mpxA.120.462 read from T0287.t2k.many.frag # found chain 1mpxA in template set T0287 120 :IFLPFFSKP 1mpxA 485 :FVTEPLTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11979 # 1w66A.120.134 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F124 (1w66A)G137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLP 1w66A 133 :VWLP T0287 125 :F 1w66A 138 :R T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=11982 # 2asbA.120.28 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IF 2asbA 133 :VR T0287 124 :F 2asbA 137 :T T0287 126 :SKP 2asbA 139 :TKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=11985 # 3eipA.120.56 read from T0287.t2k.many.frag # found chain 3eipA in training set Warning: unaligning (T0287)K127 (3eipA)H64 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 3eipA 57 :LLQPYFN T0287 128 :P 3eipA 65 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=11987 # 1ogoX.120.148 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ogoX 149 :IRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11988 # 1t1uA.120.170 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 120 :IFLPFF 1t1uA 172 :YRLPGH T0287 128 :P 1t1uA 180 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=11990 # 1y8xB.120.80 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IF 1y8xB 425 :VA T0287 123 :PFFSKP 1y8xB 428 :VTTPQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11992 # 1as4B.120.15 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1as4B 373 :IIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=11993 # 1sz2A.120.116 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 120 :IFLPFF 1sz2A 106 :MAIPML T0287 128 :P 1sz2A 114 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=11995 # 1seiA.120.60 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG T0287 128 :P 1seiA 69 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=11998 # 2bjqA.120.34 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :FFSKP 2bjqA 39 :KFGKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12000 # 1hynP.120.231 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLP 1hynP 232 :GRAD T0287 125 :FS 1hynP 237 :LE T0287 128 :P 1hynP 240 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=12003 # 1f8eA.120.77 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IF 1f8eA 159 :IS T0287 123 :PFFSKP 1f8eA 162 :PLSSPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12005 # 1kaeA.120.128 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 120 :IFLPFFSKP 1kaeA 129 :LYIPGGSAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12006 # 1cv8.120.138 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12008 # 1te0A.120.296 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 T0287 120 :IF 1te0A 333 :VV T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12010 # 1t62A.120.72 read from T0287.t2k.many.frag # found chain 1t62A in template set T0287 120 :IFLPFFSKP 1t62A 1073 :IILDGQSQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12011 # 1r5mA.120.142 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1r5mA)R261 because G (3-10) conformation "forbidden" or filtered. T0287 120 :IFL 1r5mA 255 :NVL T0287 124 :FF 1r5mA 259 :FH T0287 127 :KP 1r5mA 262 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=12014 # 1ut7A.120.63 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F125 (1ut7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPF 1ut7A 61 :NKALF T0287 126 :SK 1ut7A 67 :EK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12016 # 1wnaA.120.47 read from T0287.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)K127 (1wnaA)K55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1wnaA 48 :LLLHTGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12017 # 1jo0A.120.83 read from T0287.t2k.many.frag # found chain 1jo0A in training set T0287 120 :IFLPFFSKP 1jo0A 85 :LYRPSEEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12018 # 1t61A.120.162 read from T0287.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)I120 (1t61A)S163 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1t61A)A171 because D (zeta) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1t61A 164 :CLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 2 total=12019 # 1l1dA.120.48 read from T0287.t2k.many.frag # found chain 1l1dA in template set T0287 120 :IFLPFFSKP 1l1dA 419 :IYVDVVSGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12020 # 1lm8V.120.33 read from T0287.t2k.many.frag # found chain 1lm8V in template set T0287 120 :IFLPFFSKP 1lm8V 87 :VWLNFDGEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12021 # 2bzvA.120.71 read from T0287.t2k.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)P128 (2bzvA)G294 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 2bzvA 286 :LKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12022 # 3bamA.120.94 read from T0287.t2k.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 3bamA 95 :VYK T0287 124 :FFSK 3bamA 99 :FIEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12024 # 1ttwA.121.39 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 121 :FLP 1ttwA 40 :LAP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12026 # 1flmA.121.18 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1flmA 19 :ATQGED T0287 128 :PI 1flmA 26 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=12028 # 1h2wA.121.328 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 121 :FLPFFSKPI 1h2wA 329 :LVPEHEKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12029 # 2bjqA.121.35 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 2bjqA 36 :LW T0287 124 :F 2bjqA 39 :K T0287 127 :KPI 2bjqA 42 :KPI Number of specific fragments extracted= 3 number of extra gaps= 2 total=12032 # 1hynP.121.232 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 121 :FLPFFSKPI 1hynP 233 :RADFLEQPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12033 # 1mpxA.121.463 read from T0287.t2k.many.frag # found chain 1mpxA in template set T0287 121 :FLPFFSKPI 1mpxA 486 :VTEPLTEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12034 # 1y8xB.121.81 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :F 1y8xB 426 :A T0287 123 :PFFSKPI 1y8xB 428 :VTTPQTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12036 # 2asbA.121.29 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 121 :FL 2asbA 134 :RI T0287 124 :FFSKPI 2asbA 137 :TETKAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12038 # 1crzA.121.233 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 121 :FL 1crzA 240 :AL T0287 126 :SKPI 1crzA 245 :GSLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12040 # 1dkiA.121.193 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)K127 (1dkiA)H82 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFS 1dkiA 76 :NNPYFN T0287 128 :PI 1dkiA 83 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12042 # 1te0A.121.297 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 T0287 121 :F 1te0A 334 :V T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12044 # 1ut7A.121.64 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1ut7A 62 :KALFGEK T0287 129 :I 1ut7A 70 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=12046 # 1t1uA.121.171 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 121 :FLPFF 1t1uA 173 :RLPGH T0287 128 :PI 1t1uA 180 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12048 # 1sz2A.121.117 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 121 :FLPFF 1sz2A 107 :AIPML T0287 128 :PI 1sz2A 114 :EH Number of specific fragments extracted= 2 number of extra gaps= 1 total=12050 # 3eipA.121.57 read from T0287.t2k.many.frag # found chain 3eipA in training set Warning: unaligning (T0287)F124 (3eipA)Y61 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FLP 3eipA 58 :LQP T0287 125 :FSKPI 3eipA 62 :FNHQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12052 # 1f8eA.121.78 read from T0287.t2k.many.frag # found chain 1f8eA in training set T0287 121 :FLPFFSKPI 1f8eA 160 :SWPLSSPPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=12053 # 1oh0A.121.88 read from T0287.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. T0287 121 :F 1oh0A 89 :E T0287 124 :F 1oh0A 92 :W T0287 126 :SKPI 1oh0A 94 :GQPC Number of specific fragments extracted= 3 number of extra gaps= 2 total=12056 # 1ogoX.121.149 read from T0287.t2k.many.frag # found chain 1ogoX in training set T0287 121 :FLPFFSKPI 1ogoX 150 :RVPADANGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=12057 # 1w0pA.121.419 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FLP 1w0pA 420 :NLN T0287 125 :FSKPI 1w0pA 424 :VSAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12059 # 1r5mA.121.143 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1r5mA)F259 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FL 1r5mA 256 :VL T0287 125 :FSKPI 1r5mA 260 :HRAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12061 # 1w66A.121.135 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F124 (1w66A)G137 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLP 1w66A 134 :WLP T0287 125 :F 1w66A 138 :R T0287 127 :K 1w66A 140 :A T0287 129 :I 1w66A 142 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=12065 # 1crzA.121.277 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 284 :TS T0287 124 :FFSKPI 1crzA 287 :QAGRPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=12067 # 1nwzA.121.94 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FL 1nwzA 95 :TF T0287 124 :FF 1nwzA 98 :YQ T0287 127 :KPI 1nwzA 101 :TPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=12070 # 1as4B.121.16 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)K127 (1as4B)Q380 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1as4B 374 :IVPTDT T0287 129 :I 1as4B 382 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=12072 # 1quqB.121.16 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 1quqB 17 :LA T0287 124 :FF 1quqB 20 :FI T0287 127 :KPI 1quqB 23 :KPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12075 # 1cv8.121.139 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1cv8 140 :WN T0287 125 :FS 1cv8 144 :DN T0287 129 :I 1cv8 148 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=12078 # 1wnaA.121.48 read from T0287.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)F125 (1wnaA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPF 1wnaA 49 :LLHT T0287 126 :SK 1wnaA 54 :KK T0287 129 :I 1wnaA 57 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=12081 # 2fbeA.121.56 read from T0287.t2k.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2fbeA 57 :TP T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :I 2fbeA 65 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=12084 # 2axwA.121.82 read from T0287.t2k.many.frag # found chain 2axwA in template set Warning: unaligning (T0287)F125 (2axwA)Q87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2axwA)Q90 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPF 2axwA 83 :SRPG T0287 126 :SK 2axwA 88 :EE T0287 129 :I 2axwA 91 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=12087 # 3bamA.121.95 read from T0287.t2k.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 3bamA 96 :YK T0287 124 :FFSK 3bamA 99 :FIEN T0287 129 :I 3bamA 104 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=12090 # 2bjqA.122.36 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 2bjqA 37 :W T0287 124 :FF 2bjqA 39 :KF T0287 127 :KPIM 2bjqA 42 :KPIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=12093 # 1flmA.122.19 read from T0287.t2k.many.frag # found chain 1flmA in training set T0287 122 :LPFFSKPIM 1flmA 20 :TQGEDGPHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12094 # 1hynP.122.233 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. T0287 122 :LP 1hynP 234 :AD T0287 125 :FSKPIM 1hynP 237 :LEQPVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12096 # 1ttwA.122.40 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 T0287 122 :LP 1ttwA 41 :AP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=12098 # 1y8xB.122.82 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1y8xB 428 :VTTPQTVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12099 # 1mpxA.122.464 read from T0287.t2k.many.frag # found chain 1mpxA in template set T0287 122 :LPFFSKPIM 1mpxA 487 :TEPLTEPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12100 # 1dkiA.122.194 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 122 :LPFFSK 1dkiA 77 :NPYFNH T0287 129 :IM 1dkiA 84 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12102 # 1h2wA.122.329 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 122 :LPFFSKPIM 1h2wA 330 :VPEHEKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12103 # 1te0A.122.298 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K Number of specific fragments extracted= 2 number of extra gaps= 3 total=12105 # 2asbA.122.30 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIM 2asbA 139 :TKASE Number of specific fragments extracted= 2 number of extra gaps= 2 total=12107 # 1quqB.122.17 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. T0287 122 :L 1quqB 18 :A T0287 124 :FFSKPIM 1quqB 20 :FIDKPVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=12109 # 1crzA.122.234 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 1crzA 241 :L T0287 127 :KPIM 1crzA 246 :SLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12111 # 1crzA.122.278 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0287 122 :L 1crzA 285 :S T0287 124 :FF 1crzA 287 :QA T0287 127 :KPIM 1crzA 290 :RPQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12114 # 1w0pA.122.420 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :LP 1w0pA 421 :LN T0287 125 :FSKPIM 1w0pA 424 :VSAPII Number of specific fragments extracted= 2 number of extra gaps= 1 total=12116 # 1nwzA.122.95 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :L 1nwzA 96 :F T0287 124 :FF 1nwzA 98 :YQ T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12119 # 1ut7A.122.65 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F125 (1ut7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPF 1ut7A 63 :ALF T0287 126 :SK 1ut7A 67 :EK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 3 number of extra gaps= 2 total=12122 # 1oh0A.122.89 read from T0287.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSKPIM 1oh0A 92 :WNGQPCA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12123 # 1amx.122.59 read from T0287.t2k.many.frag # found chain 1amx in template set Warning: unaligning (T0287)L122 (1amx)K198 because L (left) conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1amx 199 :SYVSKDIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=12124 # 2bsfA.122.86 read from T0287.t2k.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFFSK 2bsfA 237 :LTVTSN T0287 129 :IM 2bsfA 244 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12126 # 2fbeA.122.57 read from T0287.t2k.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2fbeA 58 :P T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :IM 2fbeA 65 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=12129 # 1sz2A.122.118 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 122 :LPFF 1sz2A 108 :IPML T0287 128 :PIM 1sz2A 114 :EHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12131 # 1j0pA.122.11 read from T0287.t2k.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 122 :L 1j0pA 11 :M T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIM 1j0pA 17 :PVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12134 # 1b12A.122.36 read from T0287.t2k.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 122 :L 1b12A 112 :D T0287 128 :PIM 1b12A 118 :TLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12136 # 1r5mA.122.144 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 1r5mA 257 :L T0287 124 :FFSKPIM 1r5mA 259 :FHRAPIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12138 # 2a25A.122.137 read from T0287.t2k.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2a25A 227 :L T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IM 2a25A 234 :LT Number of specific fragments extracted= 4 number of extra gaps= 3 total=12142 # 4bcl.122.244 read from T0287.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (4bcl)Q247 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)Q247 Warning: unaligning (T0287)K127 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (4bcl)S253 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :L 4bcl 245 :V T0287 125 :FS 4bcl 248 :LN T0287 128 :PI 4bcl 251 :PA Number of specific fragments extracted= 3 number of extra gaps= 3 total=12145 # 1cczA.122.78 read from T0287.t2k.many.frag # found chain 1cczA in training set T0287 122 :LPFFSKPIM 1cczA 79 :SPNITDTMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12146 # 1b7yA.122.257 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 122 :LPFFS 1b7yA 258 :FPFVE T0287 128 :PIM 1b7yA 264 :GAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=12148 # 1zsqA.122.46 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 122 :L 1zsqA 116 :S T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIM 1zsqA 122 :PFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12151 # 1t1uA.122.172 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 122 :LPFF 1t1uA 174 :LPGH T0287 128 :PIM 1t1uA 180 :DTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12153 # 2bjqA.123.37 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 2bjqA 39 :KF T0287 127 :KPIMF 2bjqA 42 :KPIHG Number of specific fragments extracted= 2 number of extra gaps= 2 total=12155 # 1flmA.123.20 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFS 1flmA 21 :QGED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12157 # 1hynP.123.234 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFS 1hynP 235 :DFLE T0287 128 :PIMF 1hynP 240 :PVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12159 # 1y8xB.123.83 read from T0287.t2k.many.frag # found chain 1y8xB in template set T0287 123 :PFFSKPIMF 1y8xB 428 :VTTPQTVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12160 # 1ttwA.123.41 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 123 :P 1ttwA 42 :P T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=12162 # 1te0A.123.299 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK T0287 131 :F 1te0A 344 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=12164 # 1dkiA.123.195 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)K127 (1dkiA)H82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 123 :PFFS 1dkiA 78 :PYFN T0287 129 :IMF 1dkiA 84 :KNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12166 # 1quqB.123.18 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1quqB 20 :FIDKPVCF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12167 # 1h2wA.123.330 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 123 :PFFSKPIMF 1h2wA 331 :PEHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12168 # 1crzA.123.279 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFS 1crzA 287 :QAG T0287 128 :PIMF 1crzA 291 :PQVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=12170 # 1crzA.123.235 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMF 1crzA 245 :GSLNLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=12171 # 1mpxA.123.465 read from T0287.t2k.many.frag # found chain 1mpxA in template set T0287 123 :PFFSKPIMF 1mpxA 488 :EPLTEPLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12172 # 2asbA.123.31 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIMF 2asbA 139 :TKASEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=12174 # 1nwzA.123.96 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 3 total=12176 # 1w0pA.123.421 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 123 :P 1w0pA 422 :N T0287 125 :FSKPIMF 1w0pA 424 :VSAPIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12178 # 1dg6A.123.123 read from T0287.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)P123 (1dg6A)T214 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1dg6A 215 :SYPAPILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12179 # 1zsqA.123.47 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMF 1zsqA 122 :PFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12181 # 2a25A.123.138 read from T0287.t2k.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IMF 2a25A 234 :LTW Number of specific fragments extracted= 3 number of extra gaps= 3 total=12184 # 2bsfA.123.87 read from T0287.t2k.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)S126 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 123 :PFF 2bsfA 238 :TVT T0287 127 :K 2bsfA 242 :N T0287 129 :IMF 2bsfA 244 :VLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=12187 # 1b7yA.123.258 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)F124 (1b7yA)F260 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 123 :P 1b7yA 259 :P T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMF 1b7yA 264 :GAQF Number of specific fragments extracted= 3 number of extra gaps= 2 total=12190 # 1ut7A.123.66 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F125 (1ut7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)F73 T0287 123 :PF 1ut7A 64 :LF T0287 126 :SK 1ut7A 67 :EK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 3 number of extra gaps= 3 total=12193 # 1vchA.123.86 read from T0287.t2k.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)K127 (1vchA)D91 because L (left) conformation "forbidden" or filtered. T0287 123 :PFFS 1vchA 87 :PYME T0287 128 :PIMF 1vchA 92 :PIIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=12195 # 1amx.123.60 read from T0287.t2k.many.frag # found chain 1amx in template set T0287 123 :PFFSKPIMF 1amx 199 :SYVSKDITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12196 # 1oh0A.123.90 read from T0287.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. T0287 124 :F 1oh0A 92 :W T0287 126 :SKPIMF 1oh0A 94 :GQPCAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12198 # 2fbeA.123.58 read from T0287.t2k.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 2fbeA 60 :FTS T0287 129 :IMF 2fbeA 65 :HYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=12200 # 1xubA.123.259 read from T0287.t2k.many.frag # found chain 1xubA in training set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xubA)R244 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xubA)R244 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1xubA)S246 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1xubA)S246 T0287 123 :PFF 1xubA 240 :VEI T0287 130 :MF 1xubA 247 :LM Number of specific fragments extracted= 2 number of extra gaps= 1 total=12202 # 1j0pA.123.12 read from T0287.t2k.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIMF 1j0pA 17 :PVVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=12204 # 1b12A.123.37 read from T0287.t2k.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 128 :PIMF 1b12A 118 :TLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=12205 # 1cczA.123.79 read from T0287.t2k.many.frag # found chain 1cczA in training set T0287 123 :PFFSKPIMF 1cczA 80 :PNITDTMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12206 # 2fojA.123.12 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P123 because first residue in template chain is (2fojA)T63 Warning: unaligning (T0287)K127 (2fojA)S67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFS 2fojA 64 :SWR T0287 129 :IMF 2fojA 69 :ATF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12208 # 2bjqA.124.38 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 2bjqA 39 :KF T0287 128 :PIMFK 2bjqA 43 :PIHGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12210 # 1y8xB.124.84 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 1y8xB 429 :TTP T0287 128 :PIMFK 1y8xB 433 :TVLFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12212 # 1hynP.124.235 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFS 1hynP 236 :FLE T0287 128 :PIMFK 1hynP 240 :PVLGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12214 # 1ttwA.124.42 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 129 :I 1ttwA 48 :L T0287 132 :K 1ttwA 51 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=12216 # 1flmA.124.21 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 T0287 124 :FFS 1flmA 22 :GED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=12218 # 1te0A.124.300 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)K132 (1te0A)Q345 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K T0287 131 :F 1te0A 344 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=12221 # 1quqB.124.19 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)F124 (1quqB)F20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1quqB)V28 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSKPIMF 1quqB 21 :IDKPVCF Number of specific fragments extracted= 1 number of extra gaps= 2 total=12222 # 1dkiA.124.196 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 124 :FFSKPIMFK 1dkiA 79 :YFNHPKNLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12223 # 1crzA.124.280 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 1crzA 287 :QA T0287 128 :PIMFK 1crzA 291 :PQVYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12225 # 1crzA.124.236 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMFK 1crzA 245 :GSLNLYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12226 # 1h2wA.124.331 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K132 (1h2wA)W340 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1h2wA 332 :EHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=12227 # 1dg6A.124.124 read from T0287.t2k.many.frag # found chain 1dg6A in training set T0287 124 :FFSKPIMFK 1dg6A 215 :SYPAPILLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=12228 # 1w0pA.124.422 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1w0pA 424 :VSAPIILQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12229 # 2asbA.124.32 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2asbA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKP 2asbA 139 :TKA T0287 130 :MFK 2asbA 143 :EGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12232 # 1zsqA.124.48 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMFK 1zsqA 122 :PFVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12234 # 1nwzA.124.97 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12236 # 2bsfA.124.88 read from T0287.t2k.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2bsfA 239 :VTSN T0287 129 :IMFK 2bsfA 244 :VLLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12238 # 1gvp.124.37 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)F124 (1gvp)G38 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1gvp)L44 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSKPI 1gvp 39 :NEYPV T0287 131 :FK 1gvp 45 :VK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12240 # 1b7yA.124.259 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1b7yA)A265 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFS 1b7yA 260 :FVE T0287 128 :P 1b7yA 264 :G T0287 130 :MFK 1b7yA 266 :QFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=12243 # 2a25A.124.139 read from T0287.t2k.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)F124 (2a25A)G229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 2a25A 230 :HRR T0287 129 :IMFK 2a25A 234 :LTWE Number of specific fragments extracted= 2 number of extra gaps= 2 total=12245 # 1amx.124.61 read from T0287.t2k.many.frag # found chain 1amx in template set T0287 124 :FFSKPIMFK 1amx 200 :YVSKDITIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12246 # 1vchA.124.87 read from T0287.t2k.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)K132 (1vchA)E96 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1vchA 88 :YMEDPIIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12247 # 1gnyA.124.100 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFS 1gnyA 191 :TAD T0287 128 :PIMFK 1gnyA 195 :DLTLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12249 # 2fojA.124.13 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)K127 (2fojA)S67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2fojA)Q72 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 2fojA 64 :SWR T0287 129 :IMF 2fojA 69 :ATF Number of specific fragments extracted= 2 number of extra gaps= 2 total=12251 # 1mpxA.124.466 read from T0287.t2k.many.frag # found chain 1mpxA in template set T0287 124 :FFSKPIMFK 1mpxA 489 :PLTEPLQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12252 # 1uh4A.124.584 read from T0287.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)K132 (1uh4A)N593 because N (gamma') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1uh4A 585 :NDSVSHTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12253 # 2fbeA.124.59 read from T0287.t2k.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)S126 (2fbeA)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2fbeA 60 :FT T0287 129 :IMFK 2fbeA 65 :HYWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12255 # 1wnaA.124.51 read from T0287.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 1wnaA 52 :TGKK T0287 129 :IMFK 1wnaA 57 :LLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12257 # 1y1oA.124.70 read from T0287.t2k.many.frag # found chain 1y1oA in template set T0287 124 :FFSKPIMFK 1y1oA 68 :KRSAAVITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12258 # 1l6pA.124.75 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFSK 1l6pA 76 :IYRD T0287 129 :IMF 1l6pA 81 :LTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12260 # 1quqB.125.20 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKP 1quqB 21 :IDKP T0287 130 :MFK 1quqB 26 :CFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=12262 # 1dkiA.125.197 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 125 :FSKPIMFKM 1dkiA 80 :FNHPKNLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12263 # 1y8xB.125.85 read from T0287.t2k.many.frag # found chain 1y8xB in template set T0287 125 :FSKPIMFKM 1y8xB 430 :TPQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12264 # 2bjqA.125.39 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :F 2bjqA 40 :F T0287 127 :KPIMFKM 2bjqA 42 :KPIHGRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12266 # 1te0A.125.301 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)K132 (1te0A)Q345 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 1te0A 338 :DDK T0287 131 :F 1te0A 344 :L T0287 133 :M 1te0A 346 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=12269 # 1hynP.125.236 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1hynP 237 :LE T0287 128 :PIMFKM 1hynP 240 :PVLGFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12271 # 1flmA.125.22 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 125 :FS 1flmA 23 :ED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=12273 # 1ttwA.125.43 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :M 1ttwA 52 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=12275 # 1crzA.125.281 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 125 :FSKPIMFKM 1crzA 288 :AGRPQVYKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12276 # 1crzA.125.237 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)K132 (1crzA)V251 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1crzA 245 :GSLNLY T0287 133 :M 1crzA 252 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=12278 # 1dg6A.125.125 read from T0287.t2k.many.frag # found chain 1dg6A in training set T0287 125 :FSKPIMFKM 1dg6A 216 :YPAPILLMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12279 # 1gnyA.125.101 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)F125 (1gnyA)A192 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1gnyA)T199 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1gnyA 193 :DTDLTL T0287 133 :M 1gnyA 200 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=12281 # 1w0pA.125.423 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)M130 (1w0pA)I429 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSKPI 1w0pA 424 :VSAPI T0287 131 :FKM 1w0pA 430 :LQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12283 # 1zsqA.125.49 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 125 :F 1zsqA 119 :R T0287 128 :PIMFKM 1zsqA 122 :PFVLDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12285 # 1gvp.125.38 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K132 (1gvp)K46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 T0287 125 :FSKPIMF 1gvp 39 :NEYPVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12286 # 2asbA.125.33 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 126 :SKPIMFKM 2asbA 139 :TKASEGVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12287 # 1nwzA.125.98 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 127 :KPIM 1nwzA 101 :TPTK T0287 133 :M 1nwzA 107 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=12289 # 1h2wA.125.332 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K132 (1h2wA)W340 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKPIMF 1h2wA 333 :HEKDVLE T0287 133 :M 1h2wA 341 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=12291 # 1ikoP.125.77 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1ikoP)T114 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FS 1ikoP 107 :PD T0287 128 :PIMF 1ikoP 110 :DVKF T0287 133 :M 1ikoP 115 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=12294 # 1b7yA.125.260 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1b7yA)A265 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1b7yA)A268 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :P 1b7yA 264 :G T0287 130 :MF 1b7yA 266 :QF T0287 133 :M 1b7yA 269 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=12298 # 1ddlA.125.123 read from T0287.t2k.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ddlA)S124 T0287 126 :SKPIMFKM 1ddlA 125 :VKPIDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12299 # 1pgl2.125.290 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)F125 (1pgl2)I291 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 1pgl2 292 :QE T0287 129 :IMFKM 1pgl2 295 :VVLKF Number of specific fragments extracted= 2 number of extra gaps= 2 total=12301 # 2awgA.125.9 read from T0287.t2k.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)S126 (2awgA)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2awgA)L101 because G (3-10) conformation "forbidden" or filtered. T0287 125 :F 2awgA 97 :L T0287 127 :K 2awgA 99 :N T0287 130 :MFKM 2awgA 102 :LRKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12304 # 2bsfA.125.89 read from T0287.t2k.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 2bsfA 240 :TSN T0287 129 :IMFKM 2bsfA 244 :VLLTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12306 # 1vcaA.125.104 read from T0287.t2k.many.frag # found chain 1vcaA in training set T0287 125 :FSKPIMFKM 1vcaA 105 :AGKPITVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=12307 # 1v05A.125.20 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 125 :FSKP 1v05A 2650 :VGQK T0287 131 :FKM 1v05A 2656 :FTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12309 # 2fojA.125.14 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSK 2fojA 65 :WRS T0287 129 :IMFKM 2fojA 69 :ATFQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12311 # 1uh4A.125.585 read from T0287.t2k.many.frag # found chain 1uh4A in template set T0287 125 :FSKPIMFKM 1uh4A 586 :DSVSHTVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12312 # 1l6pA.125.76 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSK 1l6pA 77 :YRD T0287 129 :IMFKM 1l6pA 81 :LTLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12314 # 2bbdA.125.126 read from T0287.t2k.many.frag # found chain 2bbdA in template set Warning: unaligning (T0287)P128 (2bbdA)N131 because L (left) conformation "forbidden" or filtered. T0287 125 :FSK 2bbdA 128 :MVQ T0287 129 :IMFKM 2bbdA 132 :IILSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12316 # 1te0A.126.302 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 126 :SK 1te0A 339 :DK T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12318 # 1dkiA.126.198 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 126 :SKPIMFKMS 1dkiA 81 :NHPKNLFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12319 # 2bjqA.126.40 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMFKM 2bjqA 42 :KPIHGRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=12320 # 1quqB.126.21 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1quqB 23 :KPVCFVGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=12321 # 1y8xB.126.86 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1y8xB)L438 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 T0287 126 :S 1y8xB 431 :P T0287 128 :PIMFK 1y8xB 433 :TVLFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12323 # 1gnyA.126.102 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1gnyA 193 :D T0287 128 :PIMFKMS 1gnyA 195 :DLTLTCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12325 # 1flmA.126.23 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 126 :S 1flmA 24 :D T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :S 1flmA 32 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=12328 # 1dg6A.126.126 read from T0287.t2k.many.frag # found chain 1dg6A in training set T0287 126 :SKPIMFKMS 1dg6A 217 :PAPILLMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12329 # 1crzA.126.282 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1crzA 290 :RPQVYKVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=12330 # 1hynP.126.237 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1hynP 238 :E T0287 128 :PIMFKMS 1hynP 240 :PVLGFVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12332 # 1crzA.126.238 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1crzA 246 :SLNLYVMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=12333 # 1ttwA.126.44 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :MS 1ttwA 52 :MR Number of specific fragments extracted= 2 number of extra gaps= 2 total=12335 # 1pgl2.126.291 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)K127 (1pgl2)E293 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :S 1pgl2 292 :Q T0287 129 :IMFKMS 1pgl2 295 :VVLKFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12337 # 1gvp.126.39 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K132 (1gvp)K46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 126 :SKPIMF 1gvp 40 :EYPVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12338 # 1ikoP.126.78 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1ikoP 108 :D T0287 128 :PIMFKMS 1ikoP 110 :DVKFTIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12340 # 1v05A.126.21 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 126 :SKP 1v05A 2651 :GQK T0287 131 :FKMS 1v05A 2656 :FTVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12342 # 1b7yA.126.261 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 126 :S 1b7yA 262 :E T0287 128 :PIMFKMS 1b7yA 264 :GAQFAVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=12344 # 1l6pA.126.77 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 1l6pA 78 :RD T0287 129 :IMFKMS 1l6pA 81 :LTLPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12346 # 1ddlA.126.124 read from T0287.t2k.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1ddlA 125 :VKPIDV T0287 133 :MS 1ddlA 132 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12348 # 1zsqA.126.50 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMS 1zsqA 122 :PFVLDAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=12349 # 1wmxA.126.130 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)S126 (1wmxA)T131 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MS 1wmxA 138 :IP Number of specific fragments extracted= 2 number of extra gaps= 2 total=12351 # 1ogoX.126.154 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)K132 (1ogoX)S161 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1ogoX 155 :ANGRKF T0287 133 :MS 1ogoX 162 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12353 # 2fojA.126.15 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 2fojA 66 :RS T0287 129 :IMFKMS 2fojA 69 :ATFQFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12355 # 1vcaA.126.105 read from T0287.t2k.many.frag # found chain 1vcaA in training set Warning: unaligning (T0287)S126 (1vcaA)G106 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1vcaA 107 :KPITVKCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=12356 # 2awgA.126.10 read from T0287.t2k.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 126 :SK 2awgA 98 :GN T0287 129 :IMFKMS 2awgA 101 :LLRKKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12358 # 1w0pA.126.424 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1w0pA)Q431 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1w0pA)S432 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1w0pA)E433 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :S 1w0pA 425 :S T0287 128 :PIMF 1w0pA 427 :PIIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12360 # 2d9rA.126.18 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MS 2d9rA 26 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12362 # 1mspA.126.64 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)S126 (1mspA)K65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1mspA 66 :E T0287 129 :IMFKMS 1mspA 68 :VLMAVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12364 # 1mwpA.126.61 read from T0287.t2k.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 126 :SKPIMFK 1mwpA 89 :NQPVTIQ T0287 134 :S 1mwpA 97 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=12366 # 1nwzA.126.99 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)K127 (1nwzA)T101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 126 :S 1nwzA 100 :M T0287 128 :PIM 1nwzA 102 :PTK T0287 133 :MS 1nwzA 107 :VH Number of specific fragments extracted= 3 number of extra gaps= 2 total=12369 # 1te0A.127.303 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 T0287 127 :K 1te0A 340 :K T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=12371 # 1quqB.127.22 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMFK 1quqB 23 :KPVCFV T0287 134 :SI 1quqB 30 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12373 # 1gnyA.127.103 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1gnyA)T201 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFKM 1gnyA 195 :DLTLTC T0287 135 :I 1gnyA 202 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=12375 # 1dkiA.127.199 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 127 :K 1dkiA 82 :H T0287 129 :IMFKMSI 1dkiA 84 :KNLFAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12377 # 2bjqA.127.41 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)F131 (2bjqA)G46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 T0287 127 :KPIM 2bjqA 42 :KPIH T0287 132 :KM 2bjqA 47 :RA Number of specific fragments extracted= 2 number of extra gaps= 2 total=12379 # 1y8xB.127.87 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 127 :KPIMFKM 1y8xB 432 :QTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12380 # 1dg6A.127.127 read from T0287.t2k.many.frag # found chain 1dg6A in training set T0287 127 :KPIMFKMSI 1dg6A 218 :APILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12381 # 1pgl2.127.292 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)K127 (1pgl2)E293 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1pgl2 295 :VVLKFSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12382 # 1wmxA.127.131 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSI 1wmxA 138 :IPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12384 # 1l6pA.127.78 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 1l6pA 79 :D T0287 129 :IMFKMSI 1l6pA 81 :LTLPVTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12386 # 1flmA.127.24 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SI 1flmA 32 :WN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12388 # 1ddlA.127.125 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 127 :KPIMFKMSI 1ddlA 126 :KPIDVEANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12389 # 1gvp.127.40 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 127 :KPIMFK 1gvp 41 :YPVLVK T0287 135 :I 1gvp 49 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12391 # 1crzA.127.283 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 290 :RPQVYKVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12392 # 1ikoP.127.79 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1ikoP)T114 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ikoP)I115 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PI 1ikoP 110 :DV T0287 131 :F 1ikoP 113 :F T0287 134 :SI 1ikoP 116 :KF Number of specific fragments extracted= 3 number of extra gaps= 3 total=12395 # 1v05A.127.22 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 127 :KP 1v05A 2652 :QK T0287 131 :FKMSI 1v05A 2656 :FTVDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=12397 # 2d9rA.127.19 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSI 2d9rA 26 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=12399 # 1b7yA.127.262 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1b7yA)W270 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFKM 1b7yA 264 :GAQFAV T0287 135 :I 1b7yA 271 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=12401 # 1ogoX.127.155 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 127 :K 1ogoX 156 :N T0287 129 :IMFKMSI 1ogoX 158 :RKFSVEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12403 # 1zsqA.127.51 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 128 :PIMF 1zsqA 122 :PFVL T0287 133 :MSI 1zsqA 127 :ASL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12405 # 1qexA.127.155 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)K132 (1qexA)N161 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMF 1qexA 156 :STSVW T0287 134 :SI 1qexA 163 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12407 # 2fojA.127.16 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 2fojA 67 :S T0287 129 :IMFKMSI 2fojA 69 :ATFQFTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12409 # 1ttwA.127.45 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1ttwA)R53 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :M 1ttwA 52 :M T0287 135 :I 1ttwA 54 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=12412 # 1mspA.127.65 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)K127 (1mspA)E66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1mspA 68 :VLMAVSC Number of specific fragments extracted= 1 number of extra gaps= 1 total=12413 # 1crzA.127.239 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 246 :SLNLYVMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12414 # 1mwpA.127.62 read from T0287.t2k.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M130 (1mwpA)T93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 127 :KPI 1mwpA 90 :QPV T0287 131 :FK 1mwpA 94 :IQ T0287 134 :SI 1mwpA 97 :WC Number of specific fragments extracted= 3 number of extra gaps= 2 total=12417 # 1w0pA.127.425 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1w0pA 427 :PIILQSEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=12418 # 1vcaA.127.106 read from T0287.t2k.many.frag # found chain 1vcaA in training set T0287 127 :KPIMFKMSI 1vcaA 107 :KPITVKCSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12419 # 2awgA.127.11 read from T0287.t2k.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :K 2awgA 99 :N T0287 129 :IMFKMSI 2awgA 101 :LLRKKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12421 # 1iq4A.127.123 read from T0287.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0287)P128 (1iq4A)R125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1iq4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :K 1iq4A 124 :G T0287 130 :MFKMSI 1iq4A 127 :NYTLGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12423 # 1te0A.128.304 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=12424 # 1gnyA.128.104 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)R136 (1gnyA)D203 because D (zeta) conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1gnyA 195 :DLTLTCTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12425 # 1quqB.128.23 read from T0287.t2k.many.frag # found chain 1quqB in template set T0287 128 :PIMFKMSIR 1quqB 24 :PVCFVGRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12426 # 1pgl2.128.293 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1pgl2 295 :VVLKFSQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=12427 # 1dkiA.128.200 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 128 :PIMFKMSIR 1dkiA 83 :PKNLFAAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12428 # 1l6pA.128.79 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1l6pA 81 :LTLPVTIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=12429 # 1dg6A.128.128 read from T0287.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 T0287 128 :PIMFKMSI 1dg6A 219 :PILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12430 # 1ddlA.128.126 read from T0287.t2k.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMF 1ddlA 127 :PIDV T0287 133 :MSIR 1ddlA 132 :ANLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12432 # 1y8xB.128.88 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 128 :PIMFKM 1y8xB 433 :TVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12433 # 1gvp.128.41 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 128 :PIMFK 1gvp 42 :PVLVK T0287 135 :IR 1gvp 49 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12435 # 1ikoP.128.80 read from T0287.t2k.many.frag # found chain 1ikoP in template set T0287 128 :PIMFKMSIR 1ikoP 110 :DVKFTIKFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12436 # 1wmxA.128.132 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIR 1wmxA 138 :IPLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=12438 # 2d9rA.128.20 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSIR 2d9rA 26 :AIIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12440 # 1qexA.128.156 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1qexA 157 :TSVWNYSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12441 # 2bjqA.128.42 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 T0287 128 :PIMFKMS 2bjqA 43 :PIHGRAW Number of specific fragments extracted= 1 number of extra gaps= 1 total=12442 # 1flmA.128.25 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SIR 1flmA 32 :WNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12444 # 1v05A.128.23 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :P 1v05A 2653 :K T0287 132 :KMSIR 1v05A 2657 :TVDCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12446 # 1crzA.128.284 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 128 :PIMFKMSIR 1crzA 291 :PQVYKVNIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12447 # 1b7yA.128.263 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K132 (1b7yA)A268 because E (beta_S) conformation "forbidden" or filtered. T0287 128 :PIMF 1b7yA 264 :GAQF T0287 133 :MSIR 1b7yA 269 :VWWP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12449 # 2fojA.128.17 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2fojA 69 :ATFQFTVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=12450 # 1mspA.128.66 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1mspA 68 :VLMAVSCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=12451 # 2bzgA.128.114 read from T0287.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)P128 (2bzgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2bzgA 129 :SLYCCSIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12452 # 1ttwA.128.46 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)I135 (1ttwA)A54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 132 :KMS 1ttwA 51 :FMR Number of specific fragments extracted= 2 number of extra gaps= 3 total=12454 # 1zsqA.128.52 read from T0287.t2k.many.frag # found chain 1zsqA in template set T0287 128 :PIMFKMSIR 1zsqA 122 :PFVLDASLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12455 # 1ogoX.128.156 read from T0287.t2k.many.frag # found chain 1ogoX in training set T0287 128 :PIMFKMSIR 1ogoX 157 :GRKFSVEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12456 # 1mwpA.128.63 read from T0287.t2k.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 128 :PIMFK 1mwpA 91 :PVTIQ T0287 134 :SIR 1mwpA 97 :WCK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12458 # 2f15A.128.21 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)P128 (2f15A)E89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 T0287 129 :IM 2f15A 90 :VF T0287 133 :MSIR 2f15A 94 :GSFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12460 # 1uh4A.128.588 read from T0287.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)K132 (1uh4A)N593 because N (gamma') conformation "forbidden" or filtered. T0287 128 :PIMF 1uh4A 589 :SHTV T0287 133 :MSIR 1uh4A 594 :VPVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=12462 # 2cy7A.128.305 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 128 :PIMFKMSIR 2cy7A 303 :HPPCRMSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12463 # 1vajA.128.113 read from T0287.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 128 :PIMFK 1vajA 114 :PELIE T0287 134 :SIR 1vajA 120 :PPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12465 # 1te0A.129.305 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :E 1te0A 350 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=12467 # 1pgl2.129.294 read from T0287.t2k.many.frag # found chain 1pgl2 in template set T0287 129 :IMFKMSIRE 1pgl2 295 :VVLKFSQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12468 # 1gnyA.129.105 read from T0287.t2k.many.frag # found chain 1gnyA in training set T0287 129 :IMFKMSIRE 1gnyA 196 :LTLTCTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12469 # 1l6pA.129.80 read from T0287.t2k.many.frag # found chain 1l6pA in training set T0287 129 :IMFKMSIRE 1l6pA 81 :LTLPVTINQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12470 # 1dkiA.129.201 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 129 :IMFKMSIRE 1dkiA 84 :KNLFAAIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=12471 # 1quqB.129.24 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1quqB 26 :CFV T0287 134 :SIRE 1quqB 30 :RLEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12473 # 1ddlA.129.127 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 129 :IMFKMSIRE 1ddlA 128 :IDVEANLTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12474 # 1qexA.129.157 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1qexA)S166 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFK 1qexA 158 :SVWN T0287 134 :SI 1qexA 163 :SI Number of specific fragments extracted= 2 number of extra gaps= 2 total=12476 # 2d9rA.129.21 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 129 :IM 2d9rA 22 :IE T0287 133 :MSIRE 2d9rA 26 :AIIRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=12478 # 1v05A.129.24 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 131 :FKMSIRE 1v05A 2656 :FTVDCSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12479 # 2cy7A.129.306 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 129 :IMFKMSIRE 2cy7A 304 :PPCRMSIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12480 # 1gvp.129.42 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K132 (1gvp)K46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 129 :IMF 1gvp 43 :VLV T0287 135 :IRE 1gvp 49 :LDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12482 # 1ikoP.129.81 read from T0287.t2k.many.frag # found chain 1ikoP in template set T0287 129 :IMFKMSIRE 1ikoP 111 :VKFTIKFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12483 # 1mspA.129.67 read from T0287.t2k.many.frag # found chain 1mspA in template set T0287 129 :IMFKMSIRE 1mspA 68 :VLMAVSCDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=12484 # 1dg6A.129.129 read from T0287.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1dg6A)N228 T0287 129 :IMFKMSI 1dg6A 220 :ILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12485 # 1b7yA.129.264 read from T0287.t2k.many.frag # found chain 1b7yA in template set T0287 129 :IMFKMSIRE 1b7yA 265 :AQFAVWWPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12486 # 1wmxA.129.133 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIRE 1wmxA 138 :IPLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12488 # 2fojA.129.18 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)I129 (2fojA)A69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 2fojA 70 :TFQFTVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=12489 # 2f15A.129.22 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 134 :SIRE 2f15A 95 :SFNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12491 # 1ng0A.129.179 read from T0287.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)M133 (1ng0A)L184 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFK 1ng0A 180 :VTSA T0287 134 :SIRE 1ng0A 185 :PCDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12493 # 1vajA.129.114 read from T0287.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M130 (1vajA)L116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 129 :I 1vajA 115 :E T0287 131 :FK 1vajA 117 :IE T0287 134 :SIRE 1vajA 120 :PPEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=12496 # 1ttwA.129.47 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 133 :MSI 1ttwA 52 :MRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=12498 # 1ntvA.129.81 read from T0287.t2k.many.frag # found chain 1ntvA in training set T0287 129 :IMFKMSIRE 1ntvA 104 :LQHHHAVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12499 # 1wyzA.129.206 read from T0287.t2k.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)K132 (1wyzA)T210 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMF 1wyzA 207 :FIQ T0287 134 :SIRE 1wyzA 212 :TVKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12501 # 1wthD.129.83 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1wthD 84 :KTRIYGCK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12502 # 2bzgA.129.115 read from T0287.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)K132 (2bzgA)C132 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (2bzgA)C133 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMF 2bzgA 129 :SLY T0287 134 :SIRE 2bzgA 134 :SIFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12504 # 2bjqA.129.43 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 Warning: unaligning (T0287)E137 (2bjqA)N52 because L (left) conformation "forbidden" or filtered. T0287 129 :IMFKM 2bjqA 44 :IHGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12505 # 1crzA.129.285 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 129 :IMFKMSIRE 1crzA 292 :QVYKVNING Number of specific fragments extracted= 1 number of extra gaps= 0 total=12506 # 2bvcA.129.40 read from T0287.t2k.many.frag # found chain 2bvcA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (2bvcA)F35 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (2bvcA)F35 T0287 129 :I 2bvcA 33 :Q T0287 132 :KMSIRE 2bvcA 36 :TIPASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12508 # 1c8nA.129.202 read from T0287.t2k.many.frag # found chain 1c8nA in template set T0287 129 :IMFKMSIRE 1c8nA 203 :IYVDVDVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=12509 # 1te0A.130.306 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=12511 # 1pgl2.130.295 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1pgl2)E302 because G (3-10) conformation "forbidden" or filtered. T0287 130 :MFKMS 1pgl2 296 :VLKFS T0287 137 :EM 1pgl2 303 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12513 # 1l6pA.130.81 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)E137 (1l6pA)Q89 because E (beta_S) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1l6pA 82 :TLPVTIN T0287 138 :M 1l6pA 90 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=12515 # 1gnyA.130.106 read from T0287.t2k.many.frag # found chain 1gnyA in training set T0287 130 :MFKMSIREM 1gnyA 197 :TLTCTIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=12516 # 1dkiA.130.202 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 130 :MFKMSIREM 1dkiA 85 :NLFAAISTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=12517 # 1ddlA.130.128 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 130 :MFKMSIREM 1ddlA 129 :DVEANLTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12518 # 2cy7A.130.307 read from T0287.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)K132 (2cy7A)R307 because E (beta_S) conformation "forbidden" or filtered. T0287 130 :MF 2cy7A 305 :PC T0287 133 :MSIREM 2cy7A 308 :MSIAEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12520 # 1quqB.130.25 read from T0287.t2k.many.frag # found chain 1quqB in template set T0287 130 :MFKMSIREM 1quqB 26 :CFVGRLEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12521 # 1vajA.130.115 read from T0287.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 130 :MFK 1vajA 116 :LIE T0287 134 :SIREM 1vajA 120 :PPEER Number of specific fragments extracted= 2 number of extra gaps= 1 total=12523 # 2f15A.130.23 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 130 :M 2f15A 91 :F T0287 133 :MSIRE 2f15A 94 :GSFNN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12525 # 1qexA.130.158 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1qexA 159 :VWN T0287 134 :SI 1qexA 163 :SI T0287 137 :EM 1qexA 166 :SM Number of specific fragments extracted= 3 number of extra gaps= 2 total=12528 # 1b7yA.130.265 read from T0287.t2k.many.frag # found chain 1b7yA in template set T0287 130 :MFKMSIREM 1b7yA 266 :QFAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12529 # 1ng0A.130.180 read from T0287.t2k.many.frag # found chain 1ng0A in template set T0287 130 :MFKMSIREM 1ng0A 181 :TSALPCDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12530 # 1mspA.130.68 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)K132 (1mspA)A71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MF 1mspA 69 :LM T0287 133 :MSIRE 1mspA 72 :VSCDT Number of specific fragments extracted= 2 number of extra gaps= 2 total=12532 # 1v05A.130.25 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)I135 (1v05A)C2660 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMS 1v05A 2656 :FTVD T0287 136 :REM 1v05A 2661 :SKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=12534 # 1gvp.130.43 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)E137 (1gvp)E51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1gvp)G52 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFK 1gvp 44 :LVK T0287 135 :IR 1gvp 49 :LD Number of specific fragments extracted= 2 number of extra gaps= 2 total=12536 # 1wthD.130.84 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1wthD 85 :TRIYGCK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=12538 # 1ikoP.130.82 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1ikoP 113 :FTIKFQEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12539 # 2fojA.130.19 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 2fojA 70 :TFQFTVE T0287 138 :M 2fojA 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=12541 # 1c8nA.130.203 read from T0287.t2k.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)M130 (1c8nA)Y204 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1c8nA 205 :VDVDVTRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12542 # 1wmxA.130.134 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 130 :M 1wmxA 135 :H T0287 133 :MSIREM 1wmxA 138 :IPLRDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12544 # 2d9rA.130.22 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 130 :M 2d9rA 23 :E T0287 133 :MSIREM 2d9rA 26 :AIIRQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12546 # 1wyzA.130.207 read from T0287.t2k.many.frag # found chain 1wyzA in template set T0287 130 :MFKMSIREM 1wyzA 208 :IQTRTVKDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=12547 # 1ntvA.130.82 read from T0287.t2k.many.frag # found chain 1ntvA in training set T0287 130 :MFKMSIREM 1ntvA 105 :QHHHAVHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12548 # 1ttwA.130.48 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)T58 T0287 133 :MSI 1ttwA 52 :MRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=12549 # 1nls.130.61 read from T0287.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 Warning: unaligning (T0287)E137 (1nls)N69 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFKM 1nls 62 :SAVV T0287 136 :R 1nls 68 :P T0287 138 :M 1nls 70 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=12552 # 1msc.130.42 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 130 :MFKMSI 1msc 43 :KVTCSV T0287 138 :M 1msc 51 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=12554 # 1gmeA.130.55 read from T0287.t2k.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1gmeA 56 :VFKADLP T0287 138 :M 1gmeA 64 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=12556 # 1ve2A.130.194 read from T0287.t2k.many.frag # found chain 1ve2A in template set T0287 130 :MFKMSIREM 1ve2A 195 :VRLGRVEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12557 # 1e2wA.130.190 read from T0287.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)M130 (1e2wA)G191 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1e2wA)E193 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1e2wA)K198 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :F 1e2wA 192 :F T0287 133 :MSIR 1e2wA 194 :VSIE T0287 138 :M 1e2wA 199 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=12560 # 1l6pA.131.82 read from T0287.t2k.many.frag # found chain 1l6pA in training set T0287 131 :FKMSIREMD 1l6pA 83 :LPVTINQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12561 # 1pgl2.131.296 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMS 1pgl2 297 :LKFS T0287 136 :REMD 1pgl2 302 :EEFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12563 # 1te0A.131.307 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=12565 # 1gnyA.131.107 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)E137 (1gnyA)E204 because E (beta_S) conformation "forbidden" or filtered. T0287 131 :FKMSIR 1gnyA 198 :LTCTID T0287 138 :MD 1gnyA 205 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12567 # 2cy7A.131.308 read from T0287.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)M138 (2cy7A)L313 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIRE 2cy7A 306 :CRMSIAE T0287 139 :D 2cy7A 314 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=12569 # 2f15A.131.24 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIR 2f15A 94 :GSFN T0287 139 :D 2f15A 100 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=12571 # 1ng0A.131.181 read from T0287.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)I135 (1ng0A)C186 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMS 1ng0A 182 :SALP T0287 136 :REMD 1ng0A 187 :DEFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12573 # 1vajA.131.116 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 131 :FKMSIREMD 1vajA 117 :IEGPPEERP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12574 # 1bco.131.285 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1bco 533 :VR T0287 134 :SIREMD 1bco 536 :DPQQLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=12576 # 1qexA.131.159 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1qexA)S166 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FK 1qexA 160 :WN T0287 134 :SI 1qexA 163 :SI T0287 138 :MD 1qexA 167 :MF Number of specific fragments extracted= 3 number of extra gaps= 2 total=12579 # 1ddlA.131.129 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 131 :FKMSIREMD 1ddlA 130 :VEANLTNLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12580 # 1mspA.131.69 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)K132 (1mspA)A71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1mspA)D75 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1mspA)T76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :F 1mspA 70 :M T0287 133 :MSI 1mspA 72 :VSC T0287 139 :D 1mspA 78 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=12583 # 1c8nA.131.204 read from T0287.t2k.many.frag # found chain 1c8nA in template set T0287 131 :FKMSIREMD 1c8nA 205 :VDVDVTRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12584 # 1dkiA.131.203 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 131 :FKMSIREMD 1dkiA 86 :LFAAISTRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12585 # 1c96A.131.309 read from T0287.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 T0287 131 :FKMSIREM 1c96A 311 :IEINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12586 # 1e2wA.131.191 read from T0287.t2k.many.frag # found chain 1e2wA in training set T0287 131 :FKMSIREMD 1e2wA 192 :FEVSIEKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12587 # 1wthD.131.85 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1wthD 86 :RIYGCKHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12588 # 1msc.131.43 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)M138 (1msc)S51 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSI 1msc 44 :VTCSV T0287 139 :D 1msc 52 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=12590 # 1b7yA.131.266 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)D139 (1b7yA)G275 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1b7yA 267 :FAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=12591 # 1wyzA.131.208 read from T0287.t2k.many.frag # found chain 1wyzA in template set T0287 131 :FKMSIREMD 1wyzA 209 :QTRTVKDWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12592 # 1xt5A.131.72 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1xt5A)Y73 Warning: unaligning (T0287)D139 (1xt5A)L81 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1xt5A 74 :KESFGDF Number of specific fragments extracted= 1 number of extra gaps= 2 total=12593 # 1nls.131.62 read from T0287.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 Warning: unaligning (T0287)E137 (1nls)N69 because T (delta_L) conformation "forbidden" or filtered. T0287 131 :FKM 1nls 63 :AVV T0287 136 :R 1nls 68 :P T0287 138 :MD 1nls 70 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=12596 # 1gvp.131.44 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K132 (1gvp)K46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)M138 (1gvp)G52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1gvp)Q53 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :F 1gvp 45 :V T0287 135 :IRE 1gvp 49 :LDE Number of specific fragments extracted= 2 number of extra gaps= 2 total=12598 # 1gmeA.131.56 read from T0287.t2k.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1gmeA)V64 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIR 1gmeA 57 :FKADLP T0287 139 :D 1gmeA 65 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=12600 # 1wmxA.131.135 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 133 :MSIREMD 1wmxA 138 :IPLRDLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=12601 # 1v05A.131.26 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1v05A)A2663 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1v05A)G2664 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSIRE 1v05A 2657 :TVDCSK Number of specific fragments extracted= 1 number of extra gaps= 2 total=12602 # 1s28A.131.53 read from T0287.t2k.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1s28A)V60 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSI 1s28A 54 :FLSDI T0287 138 :MD 1s28A 61 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=12604 # 1quqB.131.26 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1quqB 27 :FV T0287 134 :SIREMD 1quqB 30 :RLEKIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=12606 # 1kq1A.131.31 read from T0287.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1kq1A)E38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1kq1A 32 :MK T0287 134 :SIR 1kq1A 35 :VIE T0287 139 :D 1kq1A 40 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=12609 # 1gpqA.131.80 read from T0287.t2k.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)K132 (1gpqA)F82 because E (beta_S) conformation "forbidden" or filtered. T0287 131 :F 1gpqA 81 :L T0287 133 :MSIREMD 1gpqA 83 :STIDEKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12611 # 1l6pA.132.83 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)S140 (1l6pA)A92 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1l6pA 84 :PVTINQAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=12612 # 1bco.132.286 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1bco 534 :R T0287 134 :SIREMDS 1bco 536 :DPQQLHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12614 # 2cy7A.132.309 read from T0287.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)M138 (2cy7A)L313 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIRE 2cy7A 307 :RMSIAE T0287 139 :DS 2cy7A 314 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12616 # 2f15A.132.25 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 139 :DS 2f15A 100 :ST Number of specific fragments extracted= 2 number of extra gaps= 2 total=12618 # 1gnyA.132.108 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)R136 (1gnyA)D203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSI 1gnyA 199 :TCTI T0287 137 :EMD 1gnyA 204 :EDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=12620 # 1te0A.132.308 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 T0287 132 :KMS 1te0A 345 :QVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=12622 # 1vajA.132.117 read from T0287.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1vajA)P120 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :K 1vajA 118 :E T0287 135 :IREMDS 1vajA 121 :PEERPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12624 # 1ng0A.132.182 read from T0287.t2k.many.frag # found chain 1ng0A in template set T0287 132 :KMSIREMDS 1ng0A 183 :ALPCDEFSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12625 # 1pgl2.132.297 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. T0287 132 :KMS 1pgl2 298 :KFS T0287 136 :REMDS 1pgl2 302 :EEFLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12627 # 1e2wA.132.192 read from T0287.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)E137 (1e2wA)K198 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIR 1e2wA 193 :EVSIE T0287 138 :MDS 1e2wA 199 :ANG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12629 # 1xt5A.132.73 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xt5A)L81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :EM 1xt5A 79 :DF Number of specific fragments extracted= 2 number of extra gaps= 2 total=12631 # 1h6lA.132.171 read from T0287.t2k.many.frag # found chain 1h6lA in training set T0287 132 :KMSIREMDS 1h6lA 200 :KVRAFKMNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12632 # 1luzA.132.15 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1luzA)E21 because E (beta_S) conformation "forbidden" or filtered. T0287 132 :KMSI 1luzA 16 :KGRV T0287 138 :MDS 1luzA 22 :KDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=12634 # 1c96A.132.310 read from T0287.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 132 :KMSIREM 1c96A 312 :EINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12635 # 1qexA.132.160 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)K132 (1qexA)N161 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SI 1qexA 163 :SI T0287 137 :EMD 1qexA 166 :SMF Number of specific fragments extracted= 2 number of extra gaps= 3 total=12637 # 1hx6A.132.359 read from T0287.t2k.many.frag # found chain 1hx6A in training set T0287 132 :KMSIREMDS 1hx6A 361 :VVNPKTVNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12638 # 1kq1A.132.32 read from T0287.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1kq1A)E38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1kq1A 33 :K T0287 134 :SIR 1kq1A 35 :VIE T0287 139 :DS 1kq1A 40 :DK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12641 # 1wyzA.132.209 read from T0287.t2k.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)K132 (1wyzA)T210 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1wyzA)T212 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IREMDS 1wyzA 213 :VKDWKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=12642 # 1y4wA.132.335 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 132 :KM 1y4wA 355 :HM T0287 135 :IREM 1y4wA 358 :LKTI Number of specific fragments extracted= 2 number of extra gaps= 2 total=12644 # 2airB.132.123 read from T0287.t2k.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2airB)A131 because E (beta_S) conformation "forbidden" or filtered. T0287 132 :KMSIRE 2airB 124 :SFAVRK T0287 140 :S 2airB 132 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=12646 # 1s28A.132.54 read from T0287.t2k.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1s28A)V60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s28A)N63 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1s28A 55 :LSDI T0287 138 :MD 1s28A 61 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=12648 # 1wthD.132.86 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIR 1wthD 87 :IYGCK T0287 138 :M 1wthD 93 :F T0287 140 :S 1wthD 95 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=12651 # 1msc.132.44 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 T0287 132 :KMSI 1msc 45 :TCSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12653 # 1gpqA.132.81 read from T0287.t2k.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1gpqA 82 :FSTIDEKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=12654 # 1ddlA.132.130 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 132 :KMSIREMDS 1ddlA 131 :EANLTNLNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12655 # 1c8nA.132.205 read from T0287.t2k.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)R136 (1c8nA)T210 because G (3-10) conformation "forbidden" or filtered. T0287 132 :KMSI 1c8nA 206 :DVDV T0287 137 :EMDS 1c8nA 211 :RFDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12657 # 1mspA.132.70 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1mspA)N78 because D (zeta) conformation "forbidden" or filtered. T0287 132 :KMSIRE 1mspA 71 :AVSCDT T0287 140 :S 1mspA 79 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=12659 # 1s3rA.132.261 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)K132 (1s3rA)T259 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIREMD 1s3rA 260 :ASVDSPN Number of specific fragments extracted= 1 number of extra gaps= 2 total=12660 # 1ve2A.132.196 read from T0287.t2k.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)M133 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1ve2A)P204 because C (cis) conformation "forbidden" or filtered. T0287 132 :K 1ve2A 197 :L T0287 134 :SIREM 1ve2A 199 :RVEDL T0287 140 :S 1ve2A 205 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=12663 # 2ayh.132.120 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSI 2ayh 121 :NYYT T0287 138 :MD 2ayh 127 :VG Number of specific fragments extracted= 2 number of extra gaps= 2 total=12665 # 1bco.133.287 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 133 :MSIREMDSQ 1bco 535 :FDPQQLHST Number of specific fragments extracted= 1 number of extra gaps= 0 total=12666 # 1l6pA.133.84 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1l6pA 85 :VTINQASA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12667 # 2f15A.133.26 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIR 2f15A 94 :GSFN T0287 138 :MDSQ 2f15A 99 :WSTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12669 # 1luzA.133.16 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1luzA)E21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIR 1luzA 18 :RVY T0287 138 :M 1luzA 22 :K T0287 140 :S 1luzA 24 :Y Number of specific fragments extracted= 3 number of extra gaps= 4 total=12672 # 1h6lA.133.172 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSI 1h6lA 201 :VRA T0287 137 :EMDS 1h6lA 205 :KMNS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12674 # 2cy7A.133.310 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 133 :MSIREMDSQ 2cy7A 308 :MSIAELDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12675 # 1xt5A.133.74 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1xt5A 75 :ESFGDFL T0287 141 :Q 1xt5A 83 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=12677 # 1vajA.133.118 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 133 :MSIREMDSQ 1vajA 119 :GPPEERPRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12678 # 1y4wA.133.336 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 133 :M 1y4wA 356 :M T0287 135 :IREM 1y4wA 358 :LKTI T0287 141 :Q 1y4wA 364 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=12681 # 1hx6A.133.360 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1hx6A 362 :VNPKTVNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12682 # 1s3rA.133.262 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 133 :MSIREMDSQ 1s3rA 260 :ASVDSPNSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12683 # 1te0A.133.309 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0287)Q141 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0287 133 :MS 1te0A 346 :VT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=12685 # 1gnyA.133.109 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S134 (1gnyA)T201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1gnyA)E204 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 133 :M 1gnyA 200 :C T0287 135 :IR 1gnyA 202 :ID T0287 138 :MD 1gnyA 205 :DD T0287 141 :Q 1gnyA 208 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=12689 # 1kq1A.133.33 read from T0287.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 139 :DSQ 1kq1A 40 :DKY Number of specific fragments extracted= 2 number of extra gaps= 2 total=12691 # 1c96A.133.311 read from T0287.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 133 :MSIREM 1c96A 313 :INLSEL T0287 141 :Q 1c96A 321 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=12693 # 2airB.133.124 read from T0287.t2k.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIRE 2airB 125 :FAVRK T0287 139 :DS 2airB 131 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12695 # 1oygA.133.170 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 T0287 133 :MSIRE 1oygA 197 :VNVSA T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12697 # 1e2wA.133.193 read from T0287.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)E137 (1e2wA)K198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1e2wA)G201 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1e2wA)E202 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIR 1e2wA 194 :VSIE T0287 138 :MD 1e2wA 199 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12699 # 1zpwX.133.63 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1zpwX 64 :LRIYPVA T0287 141 :Q 1zpwX 72 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=12701 # 1ng0A.133.183 read from T0287.t2k.many.frag # found chain 1ng0A in template set T0287 133 :MSIREMDSQ 1ng0A 184 :LPCDEFSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12702 # 1pgl2.133.298 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)R136 (1pgl2)E302 because G (3-10) conformation "forbidden" or filtered. T0287 133 :MSI 1pgl2 299 :FSQ T0287 137 :EMDSQ 1pgl2 303 :EFLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12704 # 1b66A.133.124 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIRE 1b66A 129 :VKVYE T0287 139 :DSQ 1b66A 135 :DNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12706 # 1msc.133.45 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 T0287 133 :MSI 1msc 46 :CSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12708 # 1mkfA.133.319 read from T0287.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)E137 (1mkfA)S324 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1mkfA)D326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIR 1mkfA 320 :LQMT T0287 138 :M 1mkfA 325 :H T0287 141 :Q 1mkfA 328 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=12711 # 1obdA.133.219 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1obdA 220 :FGIDEKT T0287 141 :Q 1obdA 228 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=12713 # 1gpqA.133.82 read from T0287.t2k.many.frag # found chain 1gpqA in template set T0287 133 :MSIREMDSQ 1gpqA 83 :STIDEKTSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12714 # 2ayh.133.121 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIREM 2ayh 122 :YYTNGV T0287 140 :SQ 2ayh 129 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=12716 # 1qexA.133.161 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1qexA 163 :SI T0287 137 :EMDSQ 1qexA 166 :SMFGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=12718 # 1wthD.133.87 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wthD)I104 T0287 133 :MSIR 1wthD 88 :YGCK T0287 138 :MDS 1wthD 93 :FSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12720 # 1s28A.133.55 read from T0287.t2k.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s28A)N63 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSI 1s28A 56 :SDI T0287 137 :EMD 1s28A 60 :VID T0287 141 :Q 1s28A 64 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=12723 # 1bco.134.288 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 134 :SIREMDSQI 1bco 536 :DPQQLHSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12724 # 1luzA.134.17 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)E137 (1luzA)E21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIR 1luzA 18 :RVY T0287 138 :MD 1luzA 22 :KD T0287 142 :I 1luzA 26 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=12727 # 1h6lA.134.173 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1h6lA 202 :RA T0287 137 :EMDSQI 1h6lA 205 :KMNSQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12729 # 2f15A.134.27 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2f15A)K102 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 138 :MDS 2f15A 99 :WST T0287 142 :I 2f15A 103 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=12732 # 1xt5A.134.75 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREMD 1xt5A 76 :SFGDFL T0287 141 :QI 1xt5A 83 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12734 # 1oygA.134.171 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 134 :SIRE 1oygA 198 :NVSA T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12736 # 1zpwX.134.64 read from T0287.t2k.many.frag # found chain 1zpwX in template set T0287 134 :SIREMDSQI 1zpwX 65 :RIYPVAGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12737 # 1vajA.134.119 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 134 :SIREMDSQI 1vajA 120 :PPEERPRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12738 # 1hx6A.134.361 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1hx6A 363 :NPKTVNQ T0287 142 :I 1hx6A 371 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=12740 # 1y4wA.134.337 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1y4wA 358 :LKTI T0287 141 :QI 1y4wA 364 :KA Number of specific fragments extracted= 2 number of extra gaps= 2 total=12742 # 1s3rA.134.263 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMD 1s3rA 261 :SVDSPN T0287 141 :QI 1s3rA 268 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12744 # 2cy7A.134.311 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 134 :SIREMDSQI 2cy7A 309 :SIAELDPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12745 # 1l6pA.134.85 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREM 1l6pA 86 :TINQA T0287 140 :S 1l6pA 92 :A T0287 142 :I 1l6pA 94 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=12748 # 1b66A.134.125 read from T0287.t2k.many.frag # found chain 1b66A in template set T0287 134 :SIREMDSQI 1b66A 130 :KVYETDNNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12749 # 1obdA.134.220 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMD 1obdA 221 :GIDEKT T0287 141 :QI 1obdA 228 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12751 # 2airB.134.125 read from T0287.t2k.many.frag # found chain 2airB in template set Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMDS 2airB 126 :AVRKRAN T0287 142 :I 2airB 134 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=12753 # 1mkfA.134.320 read from T0287.t2k.many.frag # found chain 1mkfA in template set T0287 134 :SIREMDSQI 1mkfA 321 :QMTSHDGVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=12754 # 1f00I.134.95 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)S140 (1f00I)G759 because G (3-10) conformation "forbidden" or filtered. T0287 134 :SIREMD 1f00I 753 :TLTIDD T0287 141 :QI 1f00I 760 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12756 # 1l4dB.134.73 read from T0287.t2k.many.frag # found chain 1l4dB in template set T0287 134 :SIREMDSQI 1l4dB 99 :EVIDFASDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12757 # 1gpqA.134.83 read from T0287.t2k.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)Q141 (1gpqA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1gpqA 84 :TIDEKTS T0287 142 :I 1gpqA 92 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=12759 # 1msc.134.46 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1msc)N55 T0287 134 :SI 1msc 47 :SV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12761 # 1kq1A.134.34 read from T0287.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)E137 (1kq1A)E38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIR 1kq1A 35 :VIE T0287 139 :DSQI 1kq1A 40 :DKYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12763 # 1thtA.134.156 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)S134 (1thtA)P157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 135 :IRE 1thtA 158 :IDE T0287 140 :SQI 1thtA 163 :NDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12765 # 1olzA.134.325 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)S134 (1olzA)T326 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 135 :I 1olzA 327 :V T0287 137 :EM 1olzA 329 :QS T0287 140 :SQI 1olzA 332 :TKW Number of specific fragments extracted= 3 number of extra gaps= 3 total=12768 # 1c96A.134.312 read from T0287.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 134 :SIREM 1c96A 314 :NLSEL T0287 141 :QI 1c96A 321 :HI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12770 # 1hjrA.134.16 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :S 1hjrA 17 :V T0287 140 :S 1hjrA 23 :R T0287 142 :I 1hjrA 25 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=12773 # 1k3bA.134.81 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)S134 (1k3bA)K82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1k3bA 83 :YKEE T0287 140 :SQI 1k3bA 88 :SKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=12775 # 1tzlA.134.285 read from T0287.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :S 1tzlA 287 :V T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :I 1tzlA 295 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=12779 # 1gnyA.134.110 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)R136 (1gnyA)D203 because D (zeta) conformation "forbidden" or filtered. T0287 134 :SI 1gnyA 201 :TI T0287 137 :EMDSQI 1gnyA 204 :EDDDKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12781 # 2ayh.134.122 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 2ayh 123 :YT T0287 138 :M 2ayh 127 :V T0287 140 :SQI 2ayh 129 :GHE Number of specific fragments extracted= 3 number of extra gaps= 2 total=12784 # 1bco.135.289 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 135 :IREMDSQIE 1bco 537 :PQQLHSTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=12785 # 1xt5A.135.76 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :I 1xt5A 77 :F T0287 137 :EMD 1xt5A 79 :DFL T0287 141 :QIE 1xt5A 83 :RAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=12788 # 1h6lA.135.174 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IREMDS 1h6lA 203 :AFKMNS T0287 142 :IE 1h6lA 210 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12790 # 2f15A.135.28 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2f15A)K102 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IR 2f15A 96 :FN T0287 139 :DS 2f15A 100 :ST T0287 142 :IE 2f15A 103 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=12793 # 1luzA.135.18 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :I 1luzA 19 :V T0287 137 :EMDSQIE 1luzA 21 :EKDYALY Number of specific fragments extracted= 2 number of extra gaps= 1 total=12795 # 1oygA.135.172 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)E143 (1oygA)N207 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IRE 1oygA 199 :VSA T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12797 # 1zpwX.135.65 read from T0287.t2k.many.frag # found chain 1zpwX in template set T0287 135 :IREMDSQIE 1zpwX 66 :IYPVAGQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12798 # 1hx6A.135.362 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)D139 (1hx6A)N368 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREM 1hx6A 364 :PKTV T0287 140 :S 1hx6A 369 :Q T0287 142 :I 1hx6A 371 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=12801 # 1hjrA.135.17 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=12802 # 1vajA.135.120 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 135 :IREMDSQIE 1vajA 121 :PEERPRKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12803 # 1f00I.135.96 read from T0287.t2k.many.frag # found chain 1f00I in template set T0287 135 :IREMDSQIE 1f00I 754 :LTIDDGNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12804 # 1olzA.135.326 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)Q141 (1olzA)K333 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREMDS 1olzA 327 :VEQSHT T0287 142 :IE 1olzA 334 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12806 # 1s3rA.135.264 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMD 1s3rA 262 :VDSPN T0287 141 :QIE 1s3rA 268 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12808 # 2d0oA.135.474 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)E137 (2d0oA)H477 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IR 2d0oA 475 :LR T0287 138 :MD 2d0oA 478 :ED T0287 141 :QIE 2d0oA 481 :SVQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=12811 # 1l4dB.135.74 read from T0287.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E143 (1l4dB)T108 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1l4dB 100 :VIDFASDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12812 # 1y4wA.135.338 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1y4wA 358 :LKTI T0287 141 :QIE 1y4wA 364 :KAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12814 # 1mkfA.135.321 read from T0287.t2k.many.frag # found chain 1mkfA in template set T0287 135 :IREMDSQIE 1mkfA 322 :MTSHDGVWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=12815 # 1obdA.135.221 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 135 :IREMD 1obdA 222 :IDEKT T0287 141 :QIE 1obdA 228 :EII Number of specific fragments extracted= 2 number of extra gaps= 1 total=12817 # 1b66A.135.126 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)S140 (1b66A)N136 because G (3-10) conformation "forbidden" or filtered. T0287 135 :IREMD 1b66A 131 :VYETD T0287 141 :QIE 1b66A 137 :NIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12819 # 1tzlA.135.286 read from T0287.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :IE 1tzlA 295 :IE Number of specific fragments extracted= 3 number of extra gaps= 3 total=12822 # 1obfO.135.221 read from T0287.t2k.many.frag # found chain 1obfO in training set T0287 135 :IREMDSQIE 1obfO 222 :LPELDGKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12823 # 1k3bA.135.82 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1k3bA 83 :YKEE T0287 140 :SQIE 1k3bA 88 :SKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12825 # 1thtA.135.157 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 135 :IRE 1thtA 158 :IDE T0287 140 :SQIE 1thtA 163 :NDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12827 # 2c5qA.135.140 read from T0287.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)I135 (2c5qA)S141 because G (3-10) conformation "forbidden" or filtered. T0287 136 :REMDSQIE 2c5qA 142 :CAPKAVVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12828 # 2ayh.135.123 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :I 2ayh 124 :T T0287 137 :EMD 2ayh 126 :GVG T0287 141 :QIE 2ayh 130 :HEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12831 # 2airB.135.126 read from T0287.t2k.many.frag # found chain 2airB in template set Warning: unaligning (T0287)E137 (2airB)K129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IR 2airB 127 :VR T0287 138 :MD 2airB 130 :RA T0287 142 :IE 2airB 134 :IA Number of specific fragments extracted= 3 number of extra gaps= 2 total=12834 # 2cy7A.135.312 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 135 :IREMDSQIE 2cy7A 310 :IAELDPSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12835 # 1d3yA.135.98 read from T0287.t2k.many.frag # found chain 1d3yA in template set T0287 135 :IREMDSQIE 1d3yA 167 :CTKLGTGAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=12836 # 1xmtA.135.29 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IRE 1xmtA 30 :MRN T0287 140 :SQI 1xmtA 35 :KVM Number of specific fragments extracted= 2 number of extra gaps= 2 total=12838 # 1l6pA.135.86 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)E137 (1l6pA)Q89 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IR 1l6pA 87 :IN T0287 138 :MDSQIE 1l6pA 90 :ASAGAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12840 # 1bco.136.290 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 136 :REMDSQIEL 1bco 538 :QQLHSTVYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=12841 # 1xt5A.136.77 read from T0287.t2k.many.frag # found chain 1xt5A in template set T0287 136 :REMDSQIEL 1xt5A 78 :GDFLGRASV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12842 # 1oygA.136.173 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 136 :REMDS 1oygA 200 :SASDS T0287 143 :EL 1oygA 207 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12844 # 1h6lA.136.175 read from T0287.t2k.many.frag # found chain 1h6lA in training set T0287 136 :REMDSQIEL 1h6lA 204 :FKMNSQTEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12845 # 1hjrA.136.18 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1hjrA)R23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 141 :QI 1hjrA 24 :QL Number of specific fragments extracted= 1 number of extra gaps= 2 total=12846 # 2f15A.136.29 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E143 (2f15A)P104 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMDSQI 2f15A 97 :NNWSTKI T0287 144 :L 2f15A 105 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12848 # 1luzA.136.19 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EM 1luzA 21 :EK T0287 141 :QIEL 1luzA 25 :ALYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=12850 # 1zpwX.136.66 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 136 :REMD 1zpwX 67 :YPVA T0287 141 :QIEL 1zpwX 72 :QVEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12852 # 1f00I.136.97 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1f00I 755 :TIDDGNI T0287 144 :L 1f00I 763 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=12854 # 1olzA.136.327 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1olzA)K333 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REM 1olzA 328 :EQS T0287 140 :S 1olzA 332 :T T0287 142 :IEL 1olzA 334 :WVR Number of specific fragments extracted= 3 number of extra gaps= 2 total=12857 # 2d0oA.136.475 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 136 :REMDSQIEL 2d0oA 476 :RHEDGSVQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12858 # 1obdA.136.222 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)Q141 (1obdA)E228 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDS 1obdA 223 :DEKTN T0287 142 :IEL 1obdA 229 :IIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12860 # 2c5qA.136.141 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 136 :REMDSQIEL 2c5qA 142 :CAPKAVVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12861 # 1hx6A.136.363 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :REMDSQI 1hx6A 365 :KTVNQNA T0287 144 :L 1hx6A 373 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12863 # 1mkfA.136.322 read from T0287.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :REMD 1mkfA 323 :TSHD T0287 141 :QIEL 1mkfA 328 :VWTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12865 # 1vajA.136.121 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 136 :REMDSQIEL 1vajA 122 :EERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12866 # 1s3rA.136.265 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :R 1s3rA 263 :D T0287 138 :MD 1s3rA 265 :PN T0287 141 :QIEL 1s3rA 268 :PSAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=12869 # 1l4dB.136.75 read from T0287.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1l4dB)T108 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :R 1l4dB 101 :I T0287 138 :MDSQI 1l4dB 103 :FASDA T0287 144 :L 1l4dB 109 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=12872 # 1r6wA.136.12 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 136 :REMDS 1r6wA 11 :IPMDA T0287 142 :IE 1r6wA 17 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12874 # 1b66A.136.127 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :RE 1b66A 132 :YE T0287 139 :DSQIEL 1b66A 135 :DNNIVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12876 # 1k3bA.136.83 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1k3bA)K89 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REM 1k3bA 84 :KEE T0287 140 :S 1k3bA 88 :S T0287 142 :IEL 1k3bA 90 :VTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=12879 # 1ru3A.136.336 read from T0287.t2k.many.frag # found chain 1ru3A in template set T0287 136 :REMDSQIEL 1ru3A 337 :RKGDMHVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12880 # 2ayh.136.124 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 2ayh 126 :GV T0287 140 :SQIEL 2ayh 129 :GHEKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=12882 # 1rv9A.136.187 read from T0287.t2k.many.frag # found chain 1rv9A in training set T0287 136 :REMDSQIEL 1rv9A 188 :PEAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12883 # 1tzlA.136.287 read from T0287.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1tzlA)S297 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :IE 1tzlA 295 :IE Number of specific fragments extracted= 3 number of extra gaps= 4 total=12886 # 1q67A.136.184 read from T0287.t2k.many.frag # found chain 1q67A in template set Warning: unaligning (T0287)R136 (1q67A)E185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1q67A)D188 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1q67A)I192 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EM 1q67A 186 :VK T0287 140 :SQI 1q67A 189 :ELV T0287 144 :L 1q67A 193 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=12889 # 1xmtA.136.30 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :R 1xmtA 31 :R T0287 140 :SQIEL 1xmtA 35 :KVMDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12891 # 1y4wA.136.339 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 136 :REM 1y4wA 359 :KTI T0287 140 :SQIEL 1y4wA 363 :SKATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12893 # 1uekA.136.41 read from T0287.t2k.many.frag # found chain 1uekA in training set Warning: unaligning (T0287)M138 (1uekA)V44 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :RE 1uekA 42 :EP T0287 139 :DSQIEL 1uekA 45 :SSGLHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12895 # 1d3yA.136.99 read from T0287.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)D139 (1d3yA)G171 because S (epsilon) conformation "forbidden" or filtered. T0287 136 :REM 1d3yA 168 :TKL T0287 140 :SQIEL 1d3yA 172 :TGAYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12897 # 1bco.137.291 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 137 :EMDSQIELY 1bco 539 :QLHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=12898 # 1hjrA.137.19 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :Y 1hjrA 28 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=12900 # 1xt5A.137.78 read from T0287.t2k.many.frag # found chain 1xt5A in template set T0287 137 :EMDSQIELY 1xt5A 79 :DFLGRASVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12901 # 2c5qA.137.142 read from T0287.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)E137 (2c5qA)A143 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 2c5qA 144 :PKAVVKAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12902 # 1f00I.137.98 read from T0287.t2k.many.frag # found chain 1f00I in template set T0287 137 :EMDSQIELY 1f00I 756 :IDDGNIEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12903 # 2d0oA.137.476 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)E137 (2d0oA)H477 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 2d0oA 478 :EDGSVQFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12904 # 1h6lA.137.176 read from T0287.t2k.many.frag # found chain 1h6lA in training set T0287 137 :EMDSQIELY 1h6lA 205 :KMNSQTEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=12905 # 1oygA.137.174 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)E137 (1oygA)A201 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 139 :DS 1oygA 203 :DS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12907 # 1r6wA.137.13 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 137 :EMDS 1r6wA 12 :PMDA T0287 142 :IE 1r6wA 17 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12909 # 1olzA.137.328 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EM 1olzA 329 :QS T0287 140 :SQIELY 1olzA 332 :TKWVRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=12911 # 1zpwX.137.67 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)D139 (1zpwX)A70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EM 1zpwX 68 :PV T0287 141 :QIELY 1zpwX 72 :QVEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12913 # 2f15A.137.30 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f15A 100 :STKIPLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12914 # 1obdA.137.223 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 137 :EMD 1obdA 224 :EKT T0287 141 :QIELY 1obdA 228 :EIILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12916 # 1rv9A.137.188 read from T0287.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)E143 (1rv9A)E195 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMDSQI 1rv9A 189 :EAATAF T0287 144 :LY 1rv9A 196 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12918 # 1luzA.137.20 read from T0287.t2k.many.frag # found chain 1luzA in training set T0287 137 :EMDSQIELY 1luzA 21 :EKDYALYIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=12919 # 1l4dB.137.76 read from T0287.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1l4dB 103 :FASDATIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=12920 # 1s3rA.137.266 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1s3rA 265 :PNSPSALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12921 # 1hx6A.137.364 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)S140 (1hx6A)Q369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMD 1hx6A 366 :TVN T0287 141 :QI 1hx6A 370 :NA T0287 144 :LY 1hx6A 373 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=12924 # 1ru3A.137.337 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1ru3A 338 :KGDMHVEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12925 # 1mkfA.137.323 read from T0287.t2k.many.frag # found chain 1mkfA in template set T0287 137 :EMDSQIELY 1mkfA 324 :SHDGVWTST Number of specific fragments extracted= 1 number of extra gaps= 0 total=12926 # 1b66A.137.128 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :E 1b66A 133 :E T0287 139 :DSQIELY 1b66A 135 :DNNIVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=12928 # 1xmtA.137.31 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELY 1xmtA 35 :KVMDLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12929 # 1k3bA.137.84 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EM 1k3bA 85 :EE T0287 141 :QIELY 1k3bA 89 :KVTTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=12931 # 2ayh.137.125 read from T0287.t2k.many.frag # found chain 2ayh in training set T0287 137 :EMDSQIELY 2ayh 126 :GVGGHEKVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12932 # 1d3yA.137.100 read from T0287.t2k.many.frag # found chain 1d3yA in template set T0287 137 :EMDSQIELY 1d3yA 169 :KLGTGAYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12933 # 1wubA.137.81 read from T0287.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)D139 (1wubA)S84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EM 1wubA 82 :FV T0287 140 :S 1wubA 85 :T T0287 142 :IELY 1wubA 87 :IEPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=12936 # 1jiwI.137.62 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1jiwI 63 :PTPA T0287 142 :IELY 1jiwI 68 :IALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12938 # 1tzlA.137.288 read from T0287.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)L144 (1tzlA)S297 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDSQIE 1tzlA 290 :ALNSEIE T0287 145 :Y 1tzlA 298 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12940 # 1vajA.137.122 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 137 :EMDSQIELY 1vajA 123 :ERPRKIKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12941 # 1jiwI.137.9 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMD 1jiwI 10 :DLA T0287 141 :QIELY 1jiwI 14 :QWTLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=12943 # 1bco.138.292 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1bco 540 :LHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 1 total=12944 # 2c5qA.138.143 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 138 :MDSQIELYG 2c5qA 144 :PKAVVKAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12945 # 1hjrA.138.20 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :YG 1hjrA 28 :LG Number of specific fragments extracted= 2 number of extra gaps= 2 total=12947 # 2d0oA.138.477 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 138 :MDSQIELYG 2d0oA 478 :EDGSVQFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12948 # 1r6wA.138.14 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 138 :MDS 1r6wA 13 :MDA T0287 142 :IE 1r6wA 17 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12950 # 1xt5A.138.79 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)M138 (1xt5A)F80 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1xt5A 81 :LGRASVAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=12951 # 1f00I.138.99 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)Q141 (1f00I)N760 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1f00I)G765 because H (helix) conformation "forbidden" or filtered. T0287 138 :MDS 1f00I 757 :DDG T0287 142 :IELY 1f00I 761 :IEIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=12953 # 1olzA.138.329 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :M 1olzA 330 :S T0287 140 :SQIELYG 1olzA 332 :TKWVRYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12955 # 1oygA.138.175 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)G146 (1oygA)G210 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DS 1oygA 203 :DS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 2 number of extra gaps= 3 total=12957 # 2f15A.138.31 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 2f15A 99 :WSTKIPLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12958 # 1rv9A.138.189 read from T0287.t2k.many.frag # found chain 1rv9A in training set T0287 138 :MDSQIELYG 1rv9A 190 :AATAFEGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12959 # 1zpwX.138.68 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1zpwX)E74 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MD 1zpwX 69 :VA T0287 141 :QI 1zpwX 72 :QV T0287 144 :LYG 1zpwX 75 :VLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=12962 # 1h6lA.138.177 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1h6lA)A214 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MD 1h6lA 206 :MN T0287 142 :IELY 1h6lA 210 :TEGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=12964 # 1obdA.138.224 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1obdA)D233 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MD 1obdA 225 :KT T0287 141 :QIELY 1obdA 228 :EIILV Number of specific fragments extracted= 2 number of extra gaps= 2 total=12966 # 1s3rA.138.267 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 138 :MDSQIELYG 1s3rA 265 :PNSPSALFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12967 # 1ru3A.138.338 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDSQIEL 1ru3A 339 :GDMHVEF T0287 146 :G 1ru3A 347 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=12969 # 1luzA.138.21 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 1luzA 22 :KD T0287 141 :QIELYG 1luzA 25 :ALYIYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12971 # 1l4dB.138.77 read from T0287.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)G146 (1l4dB)D111 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1l4dB 103 :FASDATIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=12972 # 1ok7A.138.37 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)Q141 (1ok7A)T41 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDS 1ok7A 38 :ADG T0287 142 :IELYG 1ok7A 42 :LSLTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12974 # 1jiwI.138.63 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 1jiwI 64 :TPA T0287 142 :IELYG 1jiwI 68 :IALLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12976 # 1xmtA.138.32 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELYG 1xmtA 35 :KVMDLVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=12977 # 2ayh.138.126 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :M 2ayh 127 :V T0287 140 :SQIELYG 2ayh 129 :GHEKVIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12979 # 2bjfA.138.158 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 2bjfA 159 :TKEKLNVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12980 # 1hx6A.138.365 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)D139 (1hx6A)N368 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :M 1hx6A 367 :V T0287 140 :SQI 1hx6A 369 :QNA T0287 144 :LYG 1hx6A 373 :LLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=12983 # 1b66A.138.129 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1b66A)K142 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1b66A 135 :DNNIVVY Number of specific fragments extracted= 1 number of extra gaps= 2 total=12984 # 1wubA.138.82 read from T0287.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)S140 (1wubA)T85 because G (3-10) conformation "forbidden" or filtered. T0287 138 :MD 1wubA 83 :VS T0287 141 :QIELYG 1wubA 86 :QIEPLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12986 # 2f6eA.138.16 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2f6eA)K21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MD 2f6eA 18 :ID T0287 142 :IELY 2f6eA 22 :NFYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=12988 # 1jiwI.138.10 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1jiwI)Q14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MD 1jiwI 11 :LA T0287 142 :IELY 1jiwI 15 :WTLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=12990 # 1ijqA.138.237 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)M138 (1ijqA)T614 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1ijqA)G615 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL Number of specific fragments extracted= 2 number of extra gaps= 3 total=12992 # 1k3bA.138.85 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1k3bA)K89 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :M 1k3bA 86 :E T0287 142 :IELYG 1k3bA 90 :VTTYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=12994 # 2c5qA.139.144 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 139 :DSQIELYGT 2c5qA 145 :KAVVKAVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=12995 # 1bco.139.293 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1bco 541 :HSTVYCY T0287 147 :T 1bco 549 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12997 # 2d0oA.139.478 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 139 :DSQIELYGT 2d0oA 479 :DGSVQFFST Number of specific fragments extracted= 1 number of extra gaps= 0 total=12998 # 1hjrA.139.21 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL T0287 145 :YGT 1hjrA 28 :LGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13000 # 1olzA.139.330 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1olzA 332 :TKWVRYNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13001 # 1r6wA.139.15 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 139 :DSQIE 1r6wA 14 :DAGVV T0287 147 :T 1r6wA 22 :R Number of specific fragments extracted= 2 number of extra gaps= 0 total=13003 Number of alignments=1031 # 1f00I.139.100 read from T0287.t2k.many.frag # found chain 1f00I in template set T0287 139 :DSQIELYGT 1f00I 758 :DGNIEIVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13004 # 1rv9A.139.190 read from T0287.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1rv9A 191 :ATAFEGIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13005 # 1ru3A.139.339 read from T0287.t2k.many.frag # found chain 1ru3A in template set T0287 139 :DSQIELYGT 1ru3A 340 :DMHVEFGGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13006 # 1ok7A.139.38 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. T0287 139 :D 1ok7A 39 :D T0287 141 :QIELYGT 1ok7A 41 :TLSLTGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13008 # 1s3rA.139.268 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 139 :DSQIELYGT 1s3rA 266 :NSPSALFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13009 # 1xt5A.139.80 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)L144 (1xt5A)V86 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. T0287 139 :DSQIE 1xt5A 81 :LGRAS T0287 145 :Y 1xt5A 87 :A T0287 147 :T 1xt5A 89 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=13012 # 1jiwI.139.64 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E143 (1jiwI)A69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 1jiwI 65 :PAGI T0287 144 :LY 1jiwI 70 :LL T0287 147 :T 1jiwI 73 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=13015 # 1oygA.139.176 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 139 :DS 1oygA 203 :DS T0287 143 :ELYGT 1oygA 207 :NINGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13017 # 2f15A.139.32 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f15A 100 :STKIPLI T0287 147 :T 2f15A 108 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=13019 # 1zpwX.139.69 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1zpwX 70 :A T0287 141 :QIELYGT 1zpwX 72 :QVEVLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13021 # 1wubA.139.83 read from T0287.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)T147 (1wubA)G92 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1wubA 84 :STQIEPLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13022 # 1ijqA.139.238 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)D139 (1ijqA)G615 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL T0287 147 :T 1ijqA 623 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=13025 # 1xmtA.139.33 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xmtA)K35 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1xmtA 36 :VMDLVHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=13026 # 1l4dB.139.78 read from T0287.t2k.many.frag # found chain 1l4dB in template set T0287 139 :DSQIELYGT 1l4dB 104 :ASDATITDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13027 # 1hbnB.139.3 read from T0287.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)S140 (1hbnB)D6 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :D 1hbnB 5 :E T0287 141 :QIELYGT 1hbnB 7 :KVDLYDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13029 # 2bjfA.139.159 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 2bjfA 160 :KE T0287 142 :IELY 2bjfA 163 :LNVF T0287 147 :T 2bjfA 168 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=13032 # 1obdA.139.225 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1obdA)D233 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1obdA 226 :T T0287 141 :QIELY 1obdA 228 :EIILV T0287 147 :T 1obdA 234 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=13035 # 1luzA.139.22 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1luzA)L30 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :D 1luzA 23 :D T0287 141 :QIELY 1luzA 25 :ALYIY T0287 147 :T 1luzA 31 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=13038 # 1gd0A.139.43 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)D139 (1gd0A)D44 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 1gd0A 45 :QLMAF T0287 146 :GT 1gd0A 51 :GS Number of specific fragments extracted= 2 number of extra gaps= 2 total=13040 # 1h6lA.139.178 read from T0287.t2k.many.frag # found chain 1h6lA in training set T0287 139 :DSQIELYGT 1h6lA 207 :NSQTEGMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13041 # 2f6eA.139.17 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2f6eA)F23 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :D 2f6eA 19 :D T0287 141 :QI 2f6eA 21 :KN T0287 144 :LYGT 2f6eA 24 :YFRN Number of specific fragments extracted= 3 number of extra gaps= 2 total=13044 # 1jiwI.139.11 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)D139 (1jiwI)A12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELYG 1jiwI 14 :QWTLQQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=13045 # 1n9eA.139.742 read from T0287.t2k.many.frag # found chain 1n9eA in training set T0287 139 :DSQIELYGT 1n9eA 743 :ESNWEFYGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13046 # 2ayh.139.127 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2ayh 128 :GGHEKVI T0287 147 :T 2ayh 136 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=13048 # 2c5qA.140.145 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 140 :SQIELYGTN 2c5qA 146 :AVVKAVGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13049 # 2d0oA.140.479 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 2d0oA 481 :SVQFFSTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=13050 # 1ru3A.140.340 read from T0287.t2k.many.frag # found chain 1ru3A in template set T0287 140 :SQIELYGTN 1ru3A 341 :MHVEFGGGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13051 # 1bco.140.294 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1bco)D550 because G (3-10) conformation "forbidden" or filtered. T0287 140 :SQI 1bco 542 :STV T0287 144 :LY 1bco 546 :CY T0287 147 :T 1bco 549 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=13054 # 1olzA.140.331 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1olzA)P340 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 1olzA 332 :TKWVRY T0287 147 :T 1olzA 339 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=13056 # 1rv9A.140.191 read from T0287.t2k.many.frag # found chain 1rv9A in training set T0287 140 :SQIELYGTN 1rv9A 192 :TAFEGIGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13057 # 1hjrA.140.22 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :YGT 1hjrA 28 :LGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=13059 # 1jiwI.140.65 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :S 1jiwI 66 :A T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG Number of specific fragments extracted= 3 number of extra gaps= 2 total=13062 # 1r6wA.140.16 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 140 :S 1r6wA 15 :A T0287 142 :IE 1r6wA 17 :VV T0287 147 :TN 1r6wA 22 :RR Number of specific fragments extracted= 3 number of extra gaps= 1 total=13065 Number of alignments=1032 # 1ok7A.140.39 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1ok7A 41 :TLSLTGTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13066 # 1f00I.140.101 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)S140 (1f00I)G759 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1f00I)T766 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1f00I)G767 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYG 1f00I 760 :NIEIVG Number of specific fragments extracted= 1 number of extra gaps= 2 total=13067 # 1s3rA.140.269 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELY 1s3rA 267 :SPSALF T0287 147 :T 1s3rA 274 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=13069 # 1xt5A.140.81 read from T0287.t2k.many.frag # found chain 1xt5A in template set T0287 140 :SQIELYGTN 1xt5A 82 :GRASVANLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13070 # 1xmtA.140.34 read from T0287.t2k.many.frag # found chain 1xmtA in training set T0287 140 :SQIELYGTN 1xmtA 35 :KVMDLVHTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=13071 # 2f15A.140.33 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)Q141 (2f15A)K102 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :S 2f15A 101 :T T0287 142 :IELYGTN 2f15A 103 :IPLIKSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13073 # 1gd0A.140.44 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 1gd0A 45 :QLMAF T0287 146 :GTN 1gd0A 51 :GSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13075 # 1hbnB.140.4 read from T0287.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)Q141 (1hbnB)K7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :S 1hbnB 6 :D T0287 142 :I 1hbnB 8 :V T0287 144 :LY 1hbnB 10 :LY T0287 147 :TN 1hbnB 13 :DR Number of specific fragments extracted= 4 number of extra gaps= 3 total=13079 # 1wubA.140.84 read from T0287.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)S140 (1wubA)T85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1wubA)L90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1wubA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1wubA)N93 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIEL 1wubA 86 :QIEP Number of specific fragments extracted= 1 number of extra gaps= 2 total=13080 # 2bjfA.140.160 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 2bjfA 161 :E T0287 142 :IELYGTN 2bjfA 163 :LNVFDNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13082 # 1xmkA.140.53 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)S140 (1xmkA)G341 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 T0287 141 :QIELYG 1xmkA 342 :DVYRQG Number of specific fragments extracted= 1 number of extra gaps= 2 total=13083 # 1oygA.140.177 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)E143 (1oygA)N207 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1oygA)E212 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1oygA 204 :S T0287 144 :LYGT 1oygA 208 :INGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13085 # 1ijqA.140.239 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL T0287 147 :TN 1ijqA 623 :EN Number of specific fragments extracted= 3 number of extra gaps= 2 total=13088 # 1acc.140.537 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 140 :SQI 1acc 538 :GNL T0287 144 :L 1acc 542 :Y T0287 146 :GTN 1acc 544 :GKD Number of specific fragments extracted= 3 number of extra gaps= 2 total=13091 # 1zpwX.140.70 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1zpwX)G79 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :S 1zpwX 71 :G T0287 142 :IELYGT 1zpwX 73 :VEVLGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13093 # 1lpbA.140.24 read from T0287.t2k.many.frag # found chain 1lpbA in template set T0287 140 :SQIELYGTN 1lpbA 25 :SNCCQHDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13094 # 1jiwI.140.12 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1jiwI)Q14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 15 :WTLQ T0287 148 :N 1jiwI 21 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=13096 # 1w8kA.140.311 read from T0287.t2k.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)S140 (1w8kA)K352 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1w8kA)N358 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELY 1w8kA 353 :KCYIF T0287 147 :TN 1w8kA 359 :TK Number of specific fragments extracted= 2 number of extra gaps= 2 total=13098 # 1n9eA.140.743 read from T0287.t2k.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)Y145 (1n9eA)Y749 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 1n9eA 744 :SNWEF T0287 146 :GTN 1n9eA 750 :GND Number of specific fragments extracted= 2 number of extra gaps= 1 total=13100 # 2f6eA.140.18 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2f6eA)F23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QI 2f6eA 21 :KN T0287 144 :LYG 2f6eA 24 :YFR Number of specific fragments extracted= 2 number of extra gaps= 3 total=13102 # 1ir6A.140.346 read from T0287.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0287)L144 (1ir6A)R390 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ir6A)G392 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ir6A)H394 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQIE 1ir6A 386 :DLLL T0287 145 :Y 1ir6A 391 :Y T0287 147 :T 1ir6A 393 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=13105 # 2c5qA.141.146 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 141 :QIELYGTNL 2c5qA 147 :VVKAVGTNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13106 # 2d0oA.141.480 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)Q141 (2d0oA)S481 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 2d0oA 482 :VQFFSTPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13107 # 1ru3A.141.341 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIEL 1ru3A 342 :HVEF T0287 146 :GTNL 1ru3A 347 :GGKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13109 # 1bco.141.295 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QI 1bco 543 :TV T0287 144 :LY 1bco 546 :CY T0287 147 :TN 1bco 549 :LD Number of specific fragments extracted= 3 number of extra gaps= 3 total=13112 # 1jiwI.141.66 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1jiwI 68 :IALLERG Number of specific fragments extracted= 1 number of extra gaps= 2 total=13113 # 1ok7A.141.40 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. T0287 141 :QIELY 1ok7A 41 :TLSLT T0287 147 :TNL 1ok7A 47 :TDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13115 # 1olzA.141.332 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)Q141 (1olzA)K333 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1olzA)P340 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1olzA 334 :WVRY T0287 147 :T 1olzA 339 :G T0287 149 :L 1olzA 341 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=13118 # 1xmkA.141.54 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)E143 (1xmkA)Y344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xmkA)G347 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 141 :QI 1xmkA 342 :DV T0287 144 :LY 1xmkA 345 :RQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=13120 # 1gd0A.141.45 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 141 :QIEL 1gd0A 46 :LMAF T0287 146 :GTNL 1gd0A 51 :GSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13122 # 2bjfA.141.161 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 2bjfA 162 :KLNVF T0287 147 :TNL 2bjfA 168 :NNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13124 # 1lpbA.141.25 read from T0287.t2k.many.frag # found chain 1lpbA in template set T0287 141 :QIELYGTNL 1lpbA 26 :NCCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13125 # 1s3rA.141.270 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 141 :QIELYGTNL 1s3rA 268 :PSALFGSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13126 # 1r6wA.141.17 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 142 :IE 1r6wA 17 :VV T0287 147 :TNL 1r6wA 22 :RRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13128 # 1xmtA.141.35 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)G146 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. T0287 141 :QIELY 1xmtA 36 :VMDLV T0287 147 :TNL 1xmtA 42 :TYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13130 # 1pjxA.141.247 read from T0287.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1pjxA)I249 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)G146 (1pjxA)G253 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0287 143 :ELY 1pjxA 250 :EVF T0287 149 :L 1pjxA 256 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=13132 # 1acc.141.538 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Q141 (1acc)N539 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :I 1acc 540 :L T0287 144 :LYGTNL 1acc 542 :YQGKDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=13134 # 2f15A.141.34 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 T0287 141 :QIELYGT 2f15A 102 :KIPLIKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=13135 # 1hbnB.141.5 read from T0287.t2k.many.frag # found chain 1hbnB in training set T0287 141 :QIELYGTNL 1hbnB 7 :KVDLYDDRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13136 # 1se8A.141.104 read from T0287.t2k.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)N148 (1se8A)Q112 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1se8A 105 :RMEQLGT T0287 149 :L 1se8A 113 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=13138 # 1jiwI.141.13 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1jiwI 14 :QWTLQ T0287 147 :TNL 1jiwI 20 :DEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13140 # 1f00I.141.102 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)N148 (1f00I)G767 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1f00I 760 :NIEIVGT T0287 149 :L 1f00I 768 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=13142 # 1rv9A.141.192 read from T0287.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)E143 (1rv9A)E195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1rv9A)G198 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1rv9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QI 1rv9A 193 :AF T0287 144 :LY 1rv9A 196 :GI T0287 149 :L 1rv9A 201 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=13145 # 1xt5A.141.82 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)E143 (1xt5A)S85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xt5A)P92 T0287 141 :QI 1xt5A 83 :RA T0287 144 :LY 1xt5A 86 :VA T0287 147 :TN 1xt5A 89 :LA Number of specific fragments extracted= 3 number of extra gaps= 3 total=13148 # 1w8kA.141.312 read from T0287.t2k.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)Y145 (1w8kA)F357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1w8kA)N358 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIEL 1w8kA 353 :KCYI T0287 147 :TNL 1w8kA 359 :TKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13150 # 1hjrA.141.23 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1hjrA 24 :QL T0287 145 :YGT 1hjrA 28 :LGS T0287 149 :L 1hjrA 32 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=13153 # 1ijqA.141.240 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ijqA)N624 because L (left) conformation "forbidden" or filtered. T0287 142 :IELYGT 1ijqA 618 :VNLLAE T0287 149 :L 1ijqA 625 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=13155 # 1v05A.141.39 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 141 :QIELYGTNL 1v05A 2669 :MVGVHGPKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13156 # 1gxrA.141.246 read from T0287.t2k.many.frag # found chain 1gxrA in training set Warning: unaligning (T0287)G146 (1gxrA)H685 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1gxrA)N687 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELY 1gxrA 680 :NVEVL T0287 147 :T 1gxrA 686 :V T0287 149 :L 1gxrA 688 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=13159 # 1ttuA.141.227 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1ttuA 414 :AF T0287 144 :LYGTNL 1ttuA 417 :ASSTKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=13161 # 1txvA.141.265 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1txvA 266 :AVEILDSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=13162 # 1bco.142.296 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1bco)D550 because G (3-10) conformation "forbidden" or filtered. T0287 142 :IELY 1bco 544 :VYCY T0287 147 :T 1bco 549 :L T0287 149 :LP 1bco 551 :GR Number of specific fragments extracted= 3 number of extra gaps= 2 total=13165 # 2c5qA.142.147 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 142 :IELYGTNLP 2c5qA 148 :VKAVGTNVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13166 # 1ok7A.142.41 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)E143 (1ok7A)S43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :I 1ok7A 42 :L T0287 144 :LYGTN 1ok7A 44 :LTGTD T0287 150 :P 1ok7A 50 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=13169 # 1ru3A.142.342 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IELY 1ru3A 343 :VEFG T0287 147 :TNLP 1ru3A 348 :GKTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13171 # 1jiwI.142.67 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)N148 (1jiwI)G74 because G (3-10) conformation "forbidden" or filtered. T0287 142 :IELYGT 1jiwI 68 :IALLER T0287 149 :LP 1jiwI 75 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13173 # 1xmkA.142.55 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 142 :IELYG 1xmkA 343 :VYRQG T0287 150 :P 1xmkA 351 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=13175 # 2d0oA.142.481 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)E143 (2d0oA)Q483 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 2d0oA 482 :V T0287 144 :LYGTNLP 2d0oA 484 :FFSTPLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13177 # 1gttA.142.188 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)E143 (1gttA)R190 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :I 1gttA 189 :V T0287 144 :LY 1gttA 191 :VL T0287 147 :TNLP 1gttA 194 :EGFP Number of specific fragments extracted= 3 number of extra gaps= 2 total=13180 # 1lpbA.142.26 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1lpbA 27 :CCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13181 # 1gd0A.142.46 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 142 :IEL 1gd0A 47 :MAF T0287 146 :GTNLP 1gd0A 51 :GSSEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13183 # 1jiwI.142.14 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E143 (1jiwI)T16 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :I 1jiwI 15 :W T0287 144 :LY 1jiwI 17 :LQ T0287 147 :TNLP 1jiwI 20 :DEAP Number of specific fragments extracted= 3 number of extra gaps= 2 total=13186 # 1pjxA.142.248 read from T0287.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG T0287 149 :L 1pjxA 256 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=13188 # 1txvA.142.266 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1txvA 267 :VEILDSY T0287 150 :P 1txvA 275 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=13190 # 2f15A.142.35 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 142 :IELY 2f15A 103 :IPLI T0287 147 :TN 2f15A 108 :SH Number of specific fragments extracted= 2 number of extra gaps= 2 total=13192 # 1v05A.142.40 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)N148 (1v05A)K2676 because G (3-10) conformation "forbidden" or filtered. T0287 142 :IELYGT 1v05A 2670 :VGVHGP T0287 149 :LP 1v05A 2677 :TP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13194 # 1acc.142.539 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1acc)D546 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IEL 1acc 540 :LQY T0287 146 :GT 1acc 544 :GK T0287 149 :LP 1acc 547 :IT Number of specific fragments extracted= 3 number of extra gaps= 2 total=13197 # 2bjfA.142.162 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2bjfA)G171 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 2bjfA 163 :LNVF T0287 147 :TNL 2bjfA 168 :NNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=13199 # 1nqeA.142.549 read from T0287.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)G146 (1nqeA)P554 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1nqeA)T556 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELY 1nqeA 550 :AVAY T0287 147 :T 1nqeA 555 :V T0287 149 :LP 1nqeA 557 :SH Number of specific fragments extracted= 3 number of extra gaps= 2 total=13202 # 1ijqA.142.241 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)N148 (1ijqA)N624 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ijqA)L626 because D (zeta) conformation "forbidden" or filtered. T0287 142 :IELYGT 1ijqA 618 :VNLLAE T0287 149 :L 1ijqA 625 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=13204 # 1olzA.142.333 read from T0287.t2k.many.frag # found chain 1olzA in template set T0287 142 :IELYGTNLP 1olzA 334 :WVRYNGPVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13205 # 1k3sA.142.69 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)E143 (1k3sA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1k3sA 70 :I T0287 144 :LYGTNL 1k3sA 72 :ADADNT Number of specific fragments extracted= 2 number of extra gaps= 2 total=13207 # 1gxrA.142.247 read from T0287.t2k.many.frag # found chain 1gxrA in training set Warning: unaligning (T0287)G146 (1gxrA)H685 because N (gamma') conformation "forbidden" or filtered. T0287 142 :IELY 1gxrA 681 :VEVL T0287 147 :TNLP 1gxrA 686 :VNKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13209 # 1s3rA.142.271 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1s3rA)T277 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELY 1s3rA 269 :SALF T0287 147 :T 1s3rA 274 :S T0287 149 :L 1s3rA 276 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=13212 # 1ttuA.142.228 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1ttuA 415 :F T0287 144 :LY 1ttuA 417 :AS T0287 147 :TNL 1ttuA 420 :TKW Number of specific fragments extracted= 3 number of extra gaps= 3 total=13215 # 1hbnB.142.6 read from T0287.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)L149 (1hbnB)G15 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1hbnB 8 :VDLYDDR T0287 150 :P 1hbnB 16 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=13217 # 1vh5A.142.117 read from T0287.t2k.many.frag # found chain 1vh5A in training set T0287 142 :IELYGTNLP 1vh5A 116 :IEIFDEKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13218 # 1se8A.142.105 read from T0287.t2k.many.frag # found chain 1se8A in training set T0287 142 :IELYGTNLP 1se8A 106 :MEQLGTQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13219 # 1vgjA.142.77 read from T0287.t2k.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)I78 Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1vgjA)N83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1vgjA 79 :GVF Number of specific fragments extracted= 1 number of extra gaps= 2 total=13220 # 1yn3A.142.7 read from T0287.t2k.many.frag # found chain 1yn3A in training set Warning: unaligning (T0287)E143 (1yn3A)T165 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1yn3A)G168 because G (3-10) conformation "forbidden" or filtered. T0287 142 :I 1yn3A 164 :I T0287 144 :LY 1yn3A 166 :VN T0287 147 :TNLP 1yn3A 169 :TSQN Number of specific fragments extracted= 3 number of extra gaps= 2 total=13223 # 1xi1A.142.291 read from T0287.t2k.many.frag # found chain 1xi1A in template set Warning: unaligning (T0287)G146 (1xi1A)E296 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1xi1A 292 :FELK T0287 147 :TNLP 1xi1A 297 :GYIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13225 # 1ru3A.143.343 read from T0287.t2k.many.frag # found chain 1ru3A in template set T0287 143 :ELYGTNLPL 1ru3A 344 :EFGGGKTPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13226 # 1xmkA.143.56 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYG 1xmkA 344 :YRQG T0287 150 :PL 1xmkA 351 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13228 # 1ok7A.143.42 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ok7A)D48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELY 1ok7A 43 :SLT T0287 147 :T 1ok7A 47 :T T0287 150 :P 1ok7A 50 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=13231 # 1bco.143.297 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 143 :ELYGTNLPL 1bco 545 :YCYTLDGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13232 # 2c5qA.143.148 read from T0287.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. T0287 143 :EL 2c5qA 149 :KA T0287 146 :GTNLPL 2c5qA 152 :GTNVQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13234 # 1gd0A.143.47 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :EL 1gd0A 48 :AF T0287 146 :GTNLP 1gd0A 51 :GSSEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=13236 # 1gttA.143.189 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGT 1gttA 190 :RVLAE T0287 149 :LPL 1gttA 196 :FPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13238 # 1lpbA.143.27 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)E143 (1lpbA)C28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1lpbA 29 :QHDTIL T0287 151 :L 1lpbA 36 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=13240 # 1v05A.143.41 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 143 :ELYGTNLPL 1v05A 2671 :GVHGPKTPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=13241 # 1jiwI.143.15 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1jiwI 16 :TLQQ T0287 148 :NLPL 1jiwI 21 :EAPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13243 # 1jiwI.143.68 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 143 :ELYGTNLPL 1jiwI 69 :ALLERGGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13244 # 2f15A.143.36 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 143 :ELYGT 2f15A 104 :PLIKS T0287 151 :L 2f15A 112 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=13246 # 2d0oA.143.482 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 143 :ELYGTNLPL 2d0oA 483 :QFFSTPLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13247 # 1acc.143.540 read from T0287.t2k.many.frag # found chain 1acc in template set T0287 143 :ELYGTNLPL 1acc 541 :QYQGKDITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13248 # 1ttuA.143.229 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)N148 (1ttuA)K421 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGT 1ttuA 416 :HASST T0287 149 :L 1ttuA 422 :W T0287 151 :L 1ttuA 424 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=13251 # 1k3sA.143.70 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1k3sA 71 :GADADNT T0287 151 :L 1k3sA 79 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=13253 # 1vgjA.143.78 read from T0287.t2k.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1vgjA 79 :GVF T0287 147 :T 1vgjA 83 :N T0287 151 :L 1vgjA 87 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=13256 # 2evrA.143.177 read from T0287.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 2evrA 166 :VFFGTSQ T0287 151 :L 2evrA 174 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=13258 # 1nqeA.143.550 read from T0287.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)G146 (1nqeA)P554 because N (gamma') conformation "forbidden" or filtered. T0287 143 :ELY 1nqeA 551 :VAY T0287 147 :TNLPL 1nqeA 555 :VTSHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13260 # 1txvA.143.267 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1txvA 268 :EIL T0287 147 :TN 1txvA 272 :SY T0287 150 :PL 1txvA 275 :QR Number of specific fragments extracted= 3 number of extra gaps= 2 total=13263 # 1pjxA.143.249 read from T0287.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)E143 (1pjxA)E250 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1pjxA 251 :VFG T0287 150 :PL 1pjxA 257 :GQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=13265 # 2fj8A.143.72 read from T0287.t2k.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2fj8A)N78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 T0287 143 :ELY 2fj8A 73 :ICT T0287 147 :T 2fj8A 77 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=13267 # 1hbnB.143.7 read from T0287.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1hbnB 10 :LY T0287 147 :TNLPL 1hbnB 13 :DRGNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13269 # 1yn3A.143.8 read from T0287.t2k.many.frag # found chain 1yn3A in training set Warning: unaligning (T0287)G146 (1yn3A)G168 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELY 1yn3A 165 :TVN T0287 147 :TNLPL 1yn3A 169 :TSQNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13271 # 1ejfA.143.64 read from T0287.t2k.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)E143 (1ejfA)K65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LY 1ejfA 66 :HK T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :L 1ejfA 73 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=13274 # 2f6eA.143.21 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 2f6eA 23 :FYF T0287 148 :NLPL 2f6eA 28 :GLPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13276 # 1r5mA.143.132 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)G146 (1r5mA)N248 because P (beta_P) conformation "forbidden" or filtered. T0287 143 :ELY 1r5mA 245 :RLW T0287 147 :TNLPL 1r5mA 249 :KTGAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13278 # 1cfb.143.111 read from T0287.t2k.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)P150 (1cfb)N728 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1cfb 721 :VGQGTEP T0287 151 :L 1cfb 729 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=13280 # 1i0vA.143.77 read from T0287.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)G146 (1i0vA)N81 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1i0vA 78 :VVF T0287 147 :TN 1i0vA 82 :EN T0287 150 :PL 1i0vA 85 :QL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13283 # 1tif.143.45 read from T0287.t2k.many.frag # found chain 1tif in training set Warning: unaligning (T0287)P150 (1tif)K53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1tif)P54 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1tif 46 :VLVAPNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13284 # 1gttA.144.190 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGT 1gttA 191 :VLAE T0287 149 :LPLL 1gttA 196 :FPPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13286 # 1xmkA.144.57 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 144 :LYG 1xmkA 345 :RQG T0287 150 :PLL 1xmkA 351 :PIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=13288 # 1ru3A.144.344 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :L 1ru3A 345 :F T0287 147 :TNLPLL 1ru3A 348 :GKTPSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=13290 # 1gd0A.144.48 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :L 1gd0A 49 :F T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :L 1gd0A 57 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=13293 # 1lpbA.144.28 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1lpbA 29 :QHDTIL T0287 151 :LL 1lpbA 36 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13295 # 1v05A.144.42 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 144 :LYGTNLPLL 1v05A 2672 :VHGPKTPCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13296 # 1jiwI.144.16 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1jiwI 17 :LQQ T0287 148 :NLPLL 1jiwI 21 :EAPAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13298 # 1k3sA.144.71 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGT 1k3sA 72 :ADAD T0287 149 :L 1k3sA 77 :T T0287 151 :LL 1k3sA 79 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=13301 # 1ok7A.144.43 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGTN 1ok7A 44 :LTGTD T0287 150 :PLL 1ok7A 50 :EME Number of specific fragments extracted= 2 number of extra gaps= 1 total=13303 # 1bco.144.298 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LY 1bco 546 :CY T0287 147 :TN 1bco 549 :LD T0287 150 :PLL 1bco 552 :RFI Number of specific fragments extracted= 3 number of extra gaps= 2 total=13306 # 1ttuA.144.230 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)L144 (1ttuA)A417 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ttuA)T420 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YG 1ttuA 418 :SS T0287 148 :NL 1ttuA 421 :KW T0287 151 :LL 1ttuA 424 :AF Number of specific fragments extracted= 3 number of extra gaps= 3 total=13309 # 2c5qA.144.149 read from T0287.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)G146 (2c5qA)G152 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 2c5qA 150 :AV T0287 147 :T 2c5qA 153 :T T0287 149 :LPLL 2c5qA 155 :VQLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=13312 # 1jiwI.144.69 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGTN 1jiwI 70 :LLERG T0287 150 :PLL 1jiwI 76 :LTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13314 # 1acc.144.541 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1acc 542 :Y T0287 146 :GTNLPLL 1acc 544 :GKDITEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=13316 # 2fj8A.144.73 read from T0287.t2k.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 T0287 144 :LY 2fj8A 74 :CT T0287 147 :TN 2fj8A 77 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=13318 # 1wnyA.144.68 read from T0287.t2k.many.frag # found chain 1wnyA in template set T0287 144 :LYGTNLPLL 1wnyA 268 :LLGEGTPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13319 # 2f15A.144.37 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 144 :LYGTN 2f15A 105 :LIKSH T0287 151 :LL 2f15A 112 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13321 # 2d0oA.144.483 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)N148 (2d0oA)P488 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LYGT 2d0oA 484 :FFST T0287 149 :LPLL 2d0oA 489 :LPPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13323 # 1nh1A.144.167 read from T0287.t2k.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)Y145 (1nh1A)H169 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1nh1A 168 :L T0287 146 :GTNLPLL 1nh1A 170 :GNVIPLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13325 # 2evrA.144.178 read from T0287.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 2evrA 167 :FFGTSQ T0287 151 :LL 2evrA 174 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13327 # 2jdxA.144.30 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 144 :LYGTNLPLL 2jdxA 68 :SYNEWDPLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13328 # 1txvA.144.268 read from T0287.t2k.many.frag # found chain 1txvA in template set T0287 144 :LYGTNLPLL 1txvA 269 :ILDSYYQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13329 # 1dmgA.144.167 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 144 :LYGTNLPLL 1dmgA 169 :LSGRNLPDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13330 # 1i0vA.144.78 read from T0287.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)N148 (1i0vA)N83 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LYGT 1i0vA 79 :VFNE T0287 149 :LPLL 1i0vA 84 :NQLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13332 # 1ejfA.144.65 read from T0287.t2k.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LY 1ejfA 66 :HK T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :LL 1ejfA 73 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13335 # 2f6eA.144.22 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LY 2f6eA 24 :YF T0287 149 :LPLL 2f6eA 29 :LPQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13337 # 1pjxA.144.250 read from T0287.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0287 144 :LYG 1pjxA 251 :VFG T0287 149 :LPLL 1pjxA 256 :GGQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13339 # 1h4aX.144.155 read from T0287.t2k.many.frag # found chain 1h4aX in training set T0287 144 :LYGTNLPLL 1h4aX 157 :WGATNARVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13340 # 1yn3A.144.9 read from T0287.t2k.many.frag # found chain 1yn3A in training set Warning: unaligning (T0287)G146 (1yn3A)G168 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LY 1yn3A 166 :VN T0287 147 :TNLPLL 1yn3A 169 :TSQNIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13342 # 1r5mA.144.133 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)G146 (1r5mA)N248 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1r5mA 246 :LW T0287 147 :TNLPLL 1r5mA 249 :KTGALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13344 # 1gttA.145.191 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 1gttA 192 :L T0287 147 :TNLPLLK 1gttA 194 :EGFPPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13346 # 1k3sA.145.72 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1k3sA 73 :DADNT T0287 151 :LLK 1k3sA 79 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13348 # 1xmkA.145.58 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)G146 (1xmkA)G347 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 145 :Y 1xmkA 346 :Q T0287 150 :PLLK 1xmkA 351 :PIWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13350 # 1ru3A.145.345 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :K 1ru3A 354 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=13352 # 1gd0A.145.49 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1gd0A 51 :GSSEPCAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13353 # 1lpbA.145.29 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1lpbA 30 :HDTIL T0287 151 :LLK 1lpbA 36 :LSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13355 # 1nh1A.145.168 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 145 :YGTNLPLLK 1nh1A 169 :HGNVIPLNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13356 # 1jiwI.145.17 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1jiwI)C26 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1jiwI 18 :Q T0287 148 :NLPLL 1jiwI 21 :EAPAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=13358 # 1wnyA.145.69 read from T0287.t2k.many.frag # found chain 1wnyA in template set T0287 145 :YGTNLPLLK 1wnyA 269 :LGEGTPVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13359 # 1jiwI.145.70 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :YGTN 1jiwI 71 :LERG T0287 150 :PLLK 1jiwI 76 :LTLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=13361 # 1bco.145.299 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 1bco 547 :Y T0287 147 :TN 1bco 549 :LD T0287 150 :PLL 1bco 552 :RFI Number of specific fragments extracted= 3 number of extra gaps= 3 total=13364 # 1v05A.145.43 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 145 :YGTNLPLLK 1v05A 2673 :HGPKTPCEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13365 # 2fj8A.145.74 read from T0287.t2k.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 145 :YGTN 2fj8A 75 :TRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13366 # 2jdxA.145.31 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)Y145 (2jdxA)Y69 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 2jdxA 70 :NEWDPLEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13367 # 1ttuA.145.231 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ttuA)K421 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1ttuA 418 :S T0287 147 :T 1ttuA 420 :T T0287 149 :L 1ttuA 422 :W T0287 151 :LLK 1ttuA 424 :AFT Number of specific fragments extracted= 4 number of extra gaps= 3 total=13371 # 2f15A.145.38 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 145 :YGTN 2f15A 106 :IKSH T0287 151 :LLK 2f15A 112 :FVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13373 # 1tul.145.75 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1tul)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 145 :YGT 1tul 76 :VQN T0287 151 :LL 1tul 82 :DL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13375 # 1ow1A.145.147 read from T0287.t2k.many.frag # found chain 1ow1A in training set T0287 145 :YGTNLPLLK 1ow1A 3617 :PGSNQPAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13376 # 1gsa.145.214 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)Y145 (1gsa)D215 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gsa)L223 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1gsa 216 :GEPVPYC Number of specific fragments extracted= 1 number of extra gaps= 2 total=13377 # 1t6aA.145.61 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLP 1t6aA 61 :DGRLYK T0287 153 :K 1t6aA 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=13379 # 1acc.145.542 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1acc)D551 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1acc 544 :GKDITEF Number of specific fragments extracted= 1 number of extra gaps= 2 total=13380 # 1ok7A.145.44 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1ok7A 45 :T T0287 147 :TNLPLLK 1ok7A 47 :TDLEMEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=13382 # 1cfb.145.133 read from T0287.t2k.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)Y145 (1cfb)N743 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1cfb)A744 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1cfb)H748 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 1cfb 745 :PNF T0287 151 :LLK 1cfb 749 :YYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13384 # 1txvA.145.269 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1txvA 270 :LDSYYQRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13385 # 1i0vA.145.79 read from T0287.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 145 :YGTN 1i0vA 80 :FNEN T0287 150 :PLLK 1i0vA 85 :QLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13387 # 1l9vA.145.179 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)G146 (1l9vA)D181 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1l9vA 180 :L T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLK 1l9vA 186 :EYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=13390 # 1ejfA.145.66 read from T0287.t2k.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 1ejfA 67 :K T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :LLK 1ejfA 73 :ILC Number of specific fragments extracted= 3 number of extra gaps= 2 total=13393 # 1yq2A.145.936 read from T0287.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)T147 (1yq2A)A938 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :YG 1yq2A 936 :DR T0287 149 :LPLLK 1yq2A 940 :APWLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13395 # 2biqA.145.151 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)Y145 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2biqA)G245 Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 148 :NLPLLK 2biqA 248 :RSPILT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13397 # 2evrA.145.179 read from T0287.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 2evrA 168 :FGTSQ T0287 151 :LLK 2evrA 174 :ATH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13399 # 1k3sA.146.73 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNL 1k3sA 74 :ADNT T0287 151 :LLKL 1k3sA 79 :LVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13401 # 1gttA.146.192 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1gttA 194 :E T0287 149 :LPLLKL 1gttA 196 :FPPLEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=13403 # 1l9vA.146.180 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)G146 (1l9vA)D181 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKL 1l9vA 186 :EYKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13405 # 1xmkA.146.59 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1xmkA)H354 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :G 1xmkA 347 :G T0287 150 :PLL 1xmkA 351 :PIW T0287 154 :L 1xmkA 355 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=13408 # 1gd0A.146.50 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :LKL 1gd0A 57 :ALC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13410 # 1ru3A.146.346 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :KL 1ru3A 354 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13412 # 1ow1A.146.148 read from T0287.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)N148 (1ow1A)N3620 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1ow1A 3618 :GS T0287 149 :LPLLKL 1ow1A 3621 :QPAYVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13414 # 1kjlA.146.34 read from T0287.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)G146 (1kjlA)K139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1kjlA)N141 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :T 1kjlA 140 :P T0287 149 :LP 1kjlA 142 :AN T0287 152 :LKL 1kjlA 145 :IAL Number of specific fragments extracted= 3 number of extra gaps= 3 total=13417 # 2b8mA.146.87 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N87 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=13418 # 1lpbA.146.30 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1lpbA 31 :DTIL T0287 151 :LLKL 1lpbA 36 :LSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13420 # 2biqA.146.152 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 148 :NLPLLKL 2biqA 248 :RSPILTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13422 # 1k8wA.146.298 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)G146 (1k8wA)G286 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0287 147 :TN 1k8wA 287 :EN T0287 150 :PLLKL 1k8wA 290 :KFIGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=13424 # 1nh1A.146.169 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 146 :GTNLPLLKL 1nh1A 170 :GNVIPLNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13425 # 1gsa.146.215 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 146 :GTNLPLLKL 1gsa 216 :GEPVPYCLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13426 # 1jiwI.146.71 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :TN 1jiwI 73 :RG T0287 150 :PLLKL 1jiwI 76 :LTLML Number of specific fragments extracted= 2 number of extra gaps= 2 total=13428 # 1jiwI.146.18 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 146 :G 1jiwI 19 :Q T0287 148 :NLPLLKL 1jiwI 21 :EAPAICH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13430 # 1ospO.146.74 read from T0287.t2k.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)G146 (1ospO)S91 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :TNLPLLKL 1ospO 92 :DDLGQTTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13431 # 1uv4A.146.30 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 146 :GTNLP 1uv4A 31 :LTEER T0287 152 :LKL 1uv4A 37 :LRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13433 # 1bco.146.300 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPLL 1bco 549 :LDGRFI T0287 154 :L 1bco 556 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=13435 # 1tul.146.76 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1tul 77 :QN T0287 151 :LLKL 1tul 82 :DLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13437 # 1o59A.146.118 read from T0287.t2k.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 146 :GTNLPL 1o59A 107 :GNHAPF T0287 154 :L 1o59A 115 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=13439 # 1yq2A.146.937 read from T0287.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1yq2A 938 :A T0287 149 :LPLLKL 1yq2A 940 :APWLRI Number of specific fragments extracted= 2 number of extra gaps= 2 total=13441 # 2fj8A.146.75 read from T0287.t2k.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 146 :GTN 2fj8A 76 :RSN T0287 154 :L 2fj8A 84 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=13443 # 1t6aA.146.62 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)G146 (1t6aA)G62 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1t6aA 63 :RLYK T0287 153 :KL 1t6aA 69 :AI Number of specific fragments extracted= 2 number of extra gaps= 2 total=13445 # 1wnyA.146.70 read from T0287.t2k.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)K153 (1wnyA)K277 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1wnyA 270 :GEGTPVL T0287 154 :L 1wnyA 278 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=13447 # 1jl0A.146.233 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 146 :GTNLPLLKL 1jl0A 234 :KSDGTYWTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13448 # 1txvA.146.270 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1txvA 271 :DSYYQRL T0287 154 :L 1txvA 279 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=13450 # 1p90A.146.23 read from T0287.t2k.many.frag # found chain 1p90A in training set T0287 146 :GTNLPLLKL 1p90A 122 :FGSCLRFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13451 # 1ejfA.146.67 read from T0287.t2k.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1ejfA 68 :RTDR T0287 151 :LLKL 1ejfA 73 :ILCC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13453 # 1v4pA.146.96 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)G146 (1v4pA)P97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKL 1v4pA 102 :ILKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13455 # 1gttA.147.193 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1gttA 194 :E T0287 149 :LPLLKLF 1gttA 196 :FPPLENP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13457 # 2b8mA.147.88 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=13458 # 1nh1A.147.170 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 147 :TNLPLLKLF 1nh1A 171 :NVIPLNTFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13459 # 1l9vA.147.181 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKLF 1l9vA 186 :EYKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13461 # 2biqA.147.153 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 2biqA 247 :N T0287 149 :LPLLKLF 2biqA 249 :SPILTII Number of specific fragments extracted= 2 number of extra gaps= 1 total=13463 # 1k3sA.147.74 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 1k3sA 75 :DNT T0287 151 :LLK 1k3sA 79 :LVA T0287 155 :F 1k3sA 83 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=13466 # 1ow1A.147.149 read from T0287.t2k.many.frag # found chain 1ow1A in training set T0287 147 :TNLPLLKLF 1ow1A 3619 :SNQPAYVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13467 # 1uv4A.147.31 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 147 :TNLP 1uv4A 32 :TEER T0287 152 :LKLF 1uv4A 37 :LRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13469 # 1k8wA.147.299 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0287 147 :TN 1k8wA 287 :EN T0287 150 :PLLKLF 1k8wA 290 :KFIGMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13471 # 1kjlA.147.35 read from T0287.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1kjlA 140 :PNAN T0287 152 :LKLF 1kjlA 145 :IALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13473 # 1v4pA.147.97 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKLF 1v4pA 102 :ILKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13475 # 1ospO.147.75 read from T0287.t2k.many.frag # found chain 1ospO in template set T0287 147 :TNLPLLKLF 1ospO 92 :DDLGQTTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13476 # 1jl0A.147.234 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 147 :TNLPLLKLF 1jl0A 235 :SDGTYWTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13477 # 2czrA.147.66 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)N148 (2czrA)D60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. T0287 147 :T 2czrA 59 :K T0287 149 :L 2czrA 61 :V T0287 151 :LLKLF 2czrA 63 :GIHIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=13480 # 1gsa.147.216 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)N148 (1gsa)P218 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gsa)L223 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :T 1gsa 217 :E T0287 149 :LPLL 1gsa 219 :VPYC T0287 154 :LF 1gsa 224 :AR Number of specific fragments extracted= 3 number of extra gaps= 2 total=13483 # 1fjgP.147.11 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)N148 (1fjgP)H13 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1fjgP 12 :K T0287 149 :LPLLKLF 1fjgP 14 :NPHYRIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13485 # 1jiwI.147.19 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 147 :TNLPLLKLF 1jiwI 20 :DEAPAICHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13486 # 1gd0A.147.51 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1gd0A 52 :SSEP T0287 152 :LKLF 1gd0A 57 :ALCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13488 # 1t6aA.147.63 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1t6aA 63 :RLYK T0287 153 :KLF 1t6aA 69 :AIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13490 # 1cid.147.123 read from T0287.t2k.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)K153 (1cid)R130 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1cid 124 :PTS T0287 154 :LF 1cid 131 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13492 # 1y12A.147.79 read from T0287.t2k.many.frag # found chain 1y12A in template set Warning: unaligning (T0287)N148 (1y12A)H78 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :T 1y12A 77 :K T0287 149 :LPLLKLF 1y12A 79 :YPQAKLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13494 # 1tul.147.77 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 147 :T 1tul 78 :N T0287 151 :LLKLF 1tul 82 :DLNAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13496 # 1o59A.147.119 read from T0287.t2k.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)N148 (1o59A)H109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 147 :T 1o59A 108 :N T0287 149 :LPL 1o59A 110 :APF T0287 154 :LF 1o59A 115 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=13499 # 2a2cA.147.421 read from T0287.t2k.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2a2cA)G403 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 T0287 149 :LPLLKLF 2a2cA 404 :WGGCTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=13500 # 2a8eA.147.164 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 2a8eA 165 :KKA T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :F 2a8eA 173 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=13503 # 1p90A.147.24 read from T0287.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1p90A)L129 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :TNLP 1p90A 123 :GSCL T0287 152 :L 1p90A 128 :F T0287 154 :LF 1p90A 130 :VY Number of specific fragments extracted= 3 number of extra gaps= 2 total=13506 # 1ysqA.147.141 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)K153 (1ysqA)V146 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPLL 1ysqA 140 :GRVPYA T0287 154 :LF 1ysqA 147 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13508 # 1i4wA.147.248 read from T0287.t2k.many.frag # found chain 1i4wA in template set T0287 147 :TNLPLLKLF 1i4wA 237 :TKGKPIALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13509 # 1ru3A.147.347 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPL 1ru3A 348 :GKTPS T0287 153 :KLF 1ru3A 354 :ELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13511 # 1yq2A.147.938 read from T0287.t2k.many.frag # found chain 1yq2A in template set T0287 147 :TNLPLLKLF 1yq2A 938 :AGAPWLRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=13512 # 2b8mA.148.89 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :V 2b8mA 97 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=13514 # 1nh1A.148.171 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 148 :NLPLLKLFV 1nh1A 172 :VIPLNTFRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13515 # 1gttA.148.194 read from T0287.t2k.many.frag # found chain 1gttA in training set T0287 148 :NLPLLKLFV 1gttA 195 :GFPPLENPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13516 # 1l9vA.148.182 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NL 1l9vA 183 :NF T0287 151 :LLKLFV 1l9vA 186 :EYKVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13518 # 2biqA.148.154 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 2biqA 249 :SPILTIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=13519 # 1uv4A.148.32 read from T0287.t2k.many.frag # found chain 1uv4A in training set T0287 148 :NLPLLKLFV 1uv4A 33 :EERGLRVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13520 # 1ow1A.148.150 read from T0287.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)N148 (1ow1A)N3620 because G (3-10) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1ow1A 3621 :QPAYVLQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=13521 # 1jl0A.148.235 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 148 :NLPLLKLFV 1jl0A 236 :DGTYWTIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13522 # 1k8wA.148.300 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPLL 1k8wA 288 :NGKFI T0287 154 :LFV 1k8wA 294 :MGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13524 # 2a2cA.148.422 read from T0287.t2k.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)P150 (2a2cA)G405 because S (epsilon) conformation "forbidden" or filtered. T0287 149 :L 2a2cA 404 :W T0287 151 :LLKLFV 2a2cA 406 :GCTVSM Number of specific fragments extracted= 2 number of extra gaps= 2 total=13526 # 1gsa.148.217 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 148 :NLPLLKLFV 1gsa 218 :PVPYCLARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13527 # 1k3sA.148.75 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k3sA)A81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 1k3sA 76 :NT T0287 151 :LL 1k3sA 79 :LV T0287 155 :FV 1k3sA 83 :YR Number of specific fragments extracted= 3 number of extra gaps= 2 total=13530 # 1kjlA.148.36 read from T0287.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)N148 (1kjlA)N141 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1kjlA 142 :AN T0287 152 :LKLFV 1kjlA 145 :IALDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=13532 # 1fjgP.148.12 read from T0287.t2k.many.frag # found chain 1fjgP in template set T0287 148 :NLPLLKLFV 1fjgP 13 :HNPHYRIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13533 # 1vr8A.148.56 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)P150 (1vr8A)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 148 :NL 1vr8A 69 :EY T0287 151 :LLKLFV 1vr8A 72 :PVFLYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13535 # 1v4pA.148.98 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 148 :NL 1v4pA 99 :DV T0287 151 :LLKLFV 1v4pA 102 :ILKVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13537 # 1cid.148.124 read from T0287.t2k.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 T0287 148 :NL 1cid 125 :TS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=13539 # 1tul.148.78 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1tul 82 :DLNAIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=13540 # 2btiA.148.27 read from T0287.t2k.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)L149 (2btiA)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2btiA)R31 because P (beta_P) conformation "forbidden" or filtered. T0287 148 :N 2btiA 26 :K T0287 151 :LL 2btiA 29 :QV T0287 154 :LFV 2btiA 32 :IGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=13543 # 1i4wA.148.249 read from T0287.t2k.many.frag # found chain 1i4wA in template set T0287 148 :NLPLLKLFV 1i4wA 238 :KGKPIALVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13544 # 2czrA.148.67 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2czrA)G63 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 2czrA 60 :DV T0287 152 :LKLFV 2czrA 64 :IHIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13546 # 1ospO.148.76 read from T0287.t2k.many.frag # found chain 1ospO in template set T0287 148 :NLPLLKLFV 1ospO 93 :DLGQTTLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13547 # 1gd0A.148.52 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLP 1gd0A 53 :SEP T0287 152 :LKLFV 1gd0A 57 :ALCSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13549 # 1y12A.148.80 read from T0287.t2k.many.frag # found chain 1y12A in template set T0287 148 :NLPLLKLFV 1y12A 78 :HYPQAKLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13550 # 2a8eA.148.165 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 2a8eA 166 :KA T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FV 2a8eA 173 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=13553 # 1f8eA.148.105 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)P150 (1f8eA)T188 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 1f8eA 186 :GK T0287 151 :LLKLFV 1f8eA 189 :RMSICI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13555 # 1jiwI.148.20 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 148 :NLPLLKLFV 1jiwI 21 :EAPAICHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13556 # 1sqwA.148.136 read from T0287.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0287)L149 (1sqwA)D138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1sqwA)G142 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :N 1sqwA 137 :A T0287 150 :PLL 1sqwA 139 :IPL T0287 154 :LFV 1sqwA 143 :FGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=13559 # 1vs0A.148.209 read from T0287.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1vs0A 662 :SLLMGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13560 # 1ysqA.148.142 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ysqA)V146 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLPL 1ysqA 141 :RVPY T0287 154 :LFV 1ysqA 147 :SIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13562 # 1nh1A.149.172 read from T0287.t2k.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)M157 (1nh1A)A181 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1nh1A 173 :IPLNTFRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=13563 # 1l9vA.149.183 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFVM 1l9vA 186 :EYKVTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13565 # 2b8mA.149.90 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :VM 2b8mA 97 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13567 # 1uv4A.149.33 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLL 1uv4A 34 :ERGL T0287 154 :LFVM 1uv4A 39 :VLKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13569 # 2biqA.149.155 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 149 :LPLLKLFVM 2biqA 249 :SPILTIITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13570 # 1vr8A.149.57 read from T0287.t2k.many.frag # found chain 1vr8A in training set T0287 149 :LPLLKLFVM 1vr8A 70 :YGPVFLYVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=13571 # 1ow1A.149.151 read from T0287.t2k.many.frag # found chain 1ow1A in training set T0287 149 :LPLLKLFVM 1ow1A 3621 :QPAYVLQIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13572 # 1k3sA.149.76 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k3sA)A81 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :L 1k3sA 77 :T T0287 151 :LL 1k3sA 79 :LV T0287 154 :LFVM 1k3sA 82 :LYRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13575 # 1jl0A.149.236 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 149 :LPLLKLFVM 1jl0A 237 :GTYWTIAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13576 # 1fjgP.149.13 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1fjgP 14 :NPHYRIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=13577 # 1gsa.149.218 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 149 :LPLLKLFVM 1gsa 219 :VPYCLARIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13578 # 1gttA.149.195 read from T0287.t2k.many.frag # found chain 1gttA in training set T0287 149 :LPLLKLFVM 1gttA 196 :FPPLENPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13579 # 2a8eA.149.166 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2a8eA)C171 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 2a8eA 167 :A T0287 151 :LL 2a8eA 169 :LL T0287 154 :LFVM 2a8eA 172 :GIQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13582 # 1no5A.149.43 read from T0287.t2k.many.frag # found chain 1no5A in training set T0287 149 :LPLLKLFVM 1no5A 44 :YSDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=13583 # 1v4pA.149.99 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 1v4pA 100 :V T0287 151 :LLKLFVM 1v4pA 102 :ILKVVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13585 # 2btiA.149.28 read from T0287.t2k.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 2btiA 27 :G T0287 151 :LLKLFVM 2btiA 29 :QVRIGVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13587 # 1p90A.149.26 read from T0287.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1p90A 125 :CL T0287 152 :LKLFVM 1p90A 128 :FLVYQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13589 # 1jiwI.149.21 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 149 :LPLLKLFVM 1jiwI 22 :APAICHLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13590 # 1tul.149.79 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1tul)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1tul 82 :DL T0287 154 :LFVM 1tul 85 :AIMF Number of specific fragments extracted= 2 number of extra gaps= 2 total=13592 # 1i4wA.149.250 read from T0287.t2k.many.frag # found chain 1i4wA in template set T0287 149 :LPLLKLFVM 1i4wA 239 :GKPIALVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=13593 # 1k8wA.149.301 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLL 1k8wA 289 :GKFI T0287 154 :LFVM 1k8wA 294 :MGEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13595 # 2a2cA.149.423 read from T0287.t2k.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2a2cA)T408 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 2a2cA 405 :GGC T0287 154 :LFVM 2a2cA 409 :VSMV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13597 # 1vl7A.149.75 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 149 :LPLLKLFVM 1vl7A 64 :NPLVNVLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13598 # 1cid.149.125 read from T0287.t2k.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K134 T0287 149 :L 1cid 126 :S T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=13600 # 1vs0A.149.210 read from T0287.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVM 1vs0A 663 :LLMGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13601 # 1ftrA.149.69 read from T0287.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1ftrA 70 :RP T0287 152 :LKLFVM 1ftrA 73 :VTIMIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13603 # 1ry9A.149.107 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1ry9A 96 :E T0287 151 :LLKLFVM 1ry9A 98 :LQLRVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13605 # 1k2xA.149.77 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 1k2xA 79 :T T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVM 1k2xA 85 :CVM Number of specific fragments extracted= 3 number of extra gaps= 2 total=13608 # 1kjlA.149.37 read from T0287.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1kjlA 142 :AN T0287 152 :LKLFVM 1kjlA 145 :IALDFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13610 # 1vqoS.149.59 read from T0287.t2k.many.frag # found chain 1vqoS in template set Warning: unaligning (T0287)P150 (1vqoS)G60 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :L 1vqoS 59 :D T0287 151 :LLKLFVM 1vqoS 61 :EKKAVVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13612 # 1nh1A.150.173 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 150 :PLLKLFVMT 1nh1A 174 :PLNTFRVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13613 # 1l9vA.150.184 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1l9vA 186 :EYKVTLNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13614 # 2biqA.150.156 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 150 :PLLKLFVMT 2biqA 250 :PILTIITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13615 # 1uv4A.150.34 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLLKLFV 1uv4A 35 :RGLRVLK T0287 158 :T 1uv4A 43 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=13617 # 1vr8A.150.58 read from T0287.t2k.many.frag # found chain 1vr8A in training set T0287 150 :PLLKLFVMT 1vr8A 71 :GPVFLYVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13618 # 2b8mA.150.91 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 150 :PLLK 2b8mA 91 :DILE T0287 156 :VMT 2b8mA 97 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13620 # 1k3sA.150.77 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1k3sA 79 :LVALYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=13621 # 1ry9A.150.108 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ry9A)L100 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1ry9A 98 :LQ T0287 154 :LFVMT 1ry9A 101 :RVVIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=13623 # 2a8eA.150.167 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVMT 2a8eA 173 :IQLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=13625 # 1ow1A.150.152 read from T0287.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)K153 (1ow1A)V3625 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 1ow1A 3622 :PAY T0287 154 :LFVMT 1ow1A 3626 :LQIFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13627 # 1fjgP.150.14 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLLKLFV 1fjgP 15 :PHYRIVV T0287 158 :T 1fjgP 23 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=13629 # 1gsa.150.219 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 150 :PLLKLFVMT 1gsa 220 :PYCLARIPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13630 # 1no5A.150.44 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 T0287 150 :PLLKLFVM 1no5A 45 :SDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=13631 # 1p90A.150.27 read from T0287.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1p90A 126 :L T0287 152 :LKLFVMT 1p90A 128 :FLVYQVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13633 # 1vl7A.150.76 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 150 :PLLKLFVMT 1vl7A 65 :PLVNVLFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13634 # 1g60A.150.115 read from T0287.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1g60A)Q116 T0287 151 :LLKLFVMT 1g60A 117 :ETILFFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13635 # 1v4pA.150.100 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1v4pA 102 :ILKVVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13636 # 1jl0A.150.237 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 150 :PLLKLFVMT 1jl0A 238 :TYWTIAITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13637 # 1k8wA.150.302 read from T0287.t2k.many.frag # found chain 1k8wA in template set T0287 150 :PLLKLFVMT 1k8wA 290 :KFIGMGEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=13638 # 1ftrA.150.70 read from T0287.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1ftrA 71 :P T0287 152 :LKLFVMT 1ftrA 73 :VTIMIGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13640 # 1jiwI.150.22 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 150 :PLLKLFVMT 1jiwI 23 :PAICHLELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13641 # 1t6aA.150.66 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PL 1t6aA 66 :KG T0287 153 :KLFVMT 1t6aA 69 :AISVRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13643 # 1vs0A.150.211 read from T0287.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1vs0A 663 :LLMGIPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13644 # 2btiA.150.29 read from T0287.t2k.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2btiA)R31 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 2btiA 29 :QV T0287 154 :LFVMT 2btiA 32 :IGVNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13646 # 1k2xA.150.78 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVMT 1k2xA 85 :CVMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=13648 # 1wvhA.150.107 read from T0287.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)P150 (1wvhA)N1712 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1wvhA)H1715 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LL 1wvhA 1713 :VC T0287 154 :LFVMT 1wvhA 1716 :LFAEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13650 # 1w0pA.150.712 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)P150 (1w0pA)Q713 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1w0pA 714 :NLGLWFSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=13651 # 2jdxA.150.36 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)M157 (2jdxA)G81 because P (beta_P) conformation "forbidden" or filtered. T0287 150 :PLLKLFV 2jdxA 74 :PLEEVIV T0287 158 :T 2jdxA 82 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=13653 # 1ysqA.150.144 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PL 1ysqA 143 :PY T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :T 1ysqA 151 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=13656 # 1i4wA.150.251 read from T0287.t2k.many.frag # found chain 1i4wA in template set T0287 150 :PLLKLFVMT 1i4wA 240 :KPIALVEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13657 # 1nh1A.151.174 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 151 :LLKLFVMTD 1nh1A 175 :LNTFRVATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13658 # 1l9vA.151.185 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 151 :LLKLFVMTD 1l9vA 186 :EYKVTLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=13659 # 2biqA.151.157 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 151 :LLKLFVMTD 2biqA 251 :ILTIITLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=13660 # 1ry9A.151.109 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ry9A 98 :LQLRVV T0287 158 :TD 1ry9A 105 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13662 # 1vr8A.151.59 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1vr8A 72 :PVFLYVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13663 # 1uv4A.151.35 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1uv4A 37 :LRVLKSSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13664 # 1vl7A.151.77 read from T0287.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0287)K153 (1vl7A)N68 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1vl7A 66 :LV T0287 154 :LFVMTD 1vl7A 69 :VLFVDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13666 # 1no5A.151.45 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 T0287 151 :LLKLFVM 1no5A 46 :DLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=13667 # 2a8eA.151.168 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)K153 (2a8eA)C171 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LL 2a8eA 169 :LL T0287 154 :LFVMTD 2a8eA 172 :GIQLQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13669 # 1k3sA.151.78 read from T0287.t2k.many.frag # found chain 1k3sA in template set T0287 151 :LLKLFVMTD 1k3sA 79 :LVALYRLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13670 # 1gsa.151.220 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1gsa 221 :YCLARIPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=13671 # 2b8mA.151.92 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)K153 (2b8mA)E94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 151 :LL 2b8mA 92 :IL T0287 156 :VMTD 2b8mA 97 :VVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13673 # 1jl0A.151.238 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 151 :LLKLFVMTD 1jl0A 239 :YWTIAITPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13674 # 1fjgP.151.15 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1fjgP 16 :HYRIVV T0287 158 :TD 1fjgP 23 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13676 # 1k8wA.151.303 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LL 1k8wA 291 :FI T0287 154 :LFVMTD 1k8wA 294 :MGEIDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13678 # 1ow1A.151.153 read from T0287.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)M157 (1ow1A)F3629 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1ow1A)P3631 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ow1A 3623 :AYVLQI T0287 158 :T 1ow1A 3630 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=13680 # 1wd6A.151.66 read from T0287.t2k.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)L151 (1wd6A)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1wd6A)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1wd6A 53 :IYLFT Number of specific fragments extracted= 1 number of extra gaps= 2 total=13681 # 1g60A.151.116 read from T0287.t2k.many.frag # found chain 1g60A in training set T0287 151 :LLKLFVMTD 1g60A 117 :ETILFFSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13682 # 1p90A.151.28 read from T0287.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1p90A 128 :FLVYQVSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13683 # 1wvhA.151.108 read from T0287.t2k.many.frag # found chain 1wvhA in template set T0287 151 :LLKLFVMTD 1wvhA 1713 :VCHLFAELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13684 # 1ysqA.151.145 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :L 1ysqA 144 :Y T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :TD 1ysqA 151 :ST Number of specific fragments extracted= 3 number of extra gaps= 2 total=13687 # 1k2xA.151.79 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVMTD 1k2xA 85 :CVMDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13689 # 1ifrA.151.19 read from T0287.t2k.many.frag # found chain 1ifrA in training set Warning: unaligning (T0287)L151 (1ifrA)F451 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ifrA 452 :VRLRNKSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13690 # 1ftrA.151.71 read from T0287.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ftrA 73 :VTIMIGHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13691 # 1v4pA.151.101 read from T0287.t2k.many.frag # found chain 1v4pA in training set T0287 151 :LLKLFVMTD 1v4pA 102 :ILKVVVIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=13692 # 2cxhA.151.98 read from T0287.t2k.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)L151 (2cxhA)I79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 2cxhA 80 :IRVYAVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=13693 # 1vetA.151.87 read from T0287.t2k.many.frag # found chain 1vetA in template set T0287 151 :LLKLFVMTD 1vetA 88 :LVVSFIASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13694 # 1ikoP.151.48 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M157 (1ikoP)V84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ikoP 78 :YYKVYM T0287 158 :TD 1ikoP 85 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13696 # 2acaA.151.135 read from T0287.t2k.many.frag # found chain 2acaA in template set T0287 151 :LLKLFVMTD 2acaA 136 :FAEFAIMTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13697 # 1yu0A.151.107 read from T0287.t2k.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 151 :LLKL 1yu0A 108 :DYAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13699 # 1l9vA.152.186 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 152 :LKLFVMTDE 1l9vA 187 :YKVTLNEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13700 # 1nh1A.152.175 read from T0287.t2k.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)K153 (1nh1A)T177 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 1nh1A 176 :N T0287 154 :LFVMTDE 1nh1A 178 :FRVATDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13702 # 1no5A.152.46 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 T0287 152 :LKLFVM 1no5A 47 :LDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=13703 # 1vl7A.152.78 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 152 :LKLFVMTDE 1vl7A 67 :VNVLFVDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13704 # 1ry9A.152.110 read from T0287.t2k.many.frag # found chain 1ry9A in template set T0287 152 :LKLFVMTDE 1ry9A 99 :QLRVVIKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13705 # 1jl0A.152.239 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 152 :LKLFVMTDE 1jl0A 240 :WTIAITPEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13706 # 1vr8A.152.60 read from T0287.t2k.many.frag # found chain 1vr8A in training set T0287 152 :LKLFVMTDE 1vr8A 73 :VFLYVYKGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13707 # 1uv4A.152.36 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1uv4A 37 :LRVLK T0287 158 :TDE 1uv4A 43 :SDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13709 # 1ifrA.152.20 read from T0287.t2k.many.frag # found chain 1ifrA in training set Warning: unaligning (T0287)E160 (1ifrA)E460 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ifrA 452 :VRLRNKSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13710 # 1fjgP.152.16 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1fjgP 17 :YRIVV T0287 158 :TDE 1fjgP 23 :DAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13712 # 2a8eA.152.169 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 2a8eA 170 :LC T0287 155 :FVMTDE 2a8eA 173 :IQLQKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13714 # 2biqA.152.158 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)M157 (2biqA)L257 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :LKLFV 2biqA 252 :LTIIT T0287 158 :TDE 2biqA 258 :EDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13716 # 1wd6A.152.67 read from T0287.t2k.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)L152 (1wd6A)G51 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 1wd6A 52 :GIYLFTDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13717 # 1wvhA.152.109 read from T0287.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)D159 (1wvhA)D1721 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1wvhA 1714 :CHLFAEL T0287 160 :E 1wvhA 1722 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=13719 # 1gsa.152.221 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1gsa 222 :CLARIPQ T0287 160 :E 1gsa 230 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=13721 # 1k8wA.152.304 read from T0287.t2k.many.frag # found chain 1k8wA in template set T0287 152 :LKLFVMTDE 1k8wA 292 :IGMGEIDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13722 # 2c60A.152.67 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 T0287 152 :LKLFV 2c60A 81 :LDLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13724 # 1yu0A.152.108 read from T0287.t2k.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 Warning: unaligning (T0287)E160 (1yu0A)G117 because T (delta_L) conformation "forbidden" or filtered. T0287 152 :LKL 1yu0A 109 :YAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=13726 # 2cy5A.152.94 read from T0287.t2k.many.frag # found chain 2cy5A in template set T0287 152 :LKLFVMTDE 2cy5A 120 :LLLVCQEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13727 # 1vetA.152.88 read from T0287.t2k.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1vetA 89 :VVSFI T0287 158 :TDE 1vetA 95 :SSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13729 # 1g60A.152.117 read from T0287.t2k.many.frag # found chain 1g60A in training set T0287 152 :LKLFVMTDE 1g60A 118 :TILFFSKSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13730 # 1f8eA.152.109 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. T0287 152 :LKLFV 1f8eA 190 :MSICI T0287 159 :DE 1f8eA 197 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13732 # 1k2xA.152.80 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 1k2xA 82 :LD T0287 155 :FVMTDE 1k2xA 85 :CVMDGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13734 # 1yb3A.152.83 read from T0287.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1yb3A)F77 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1yb3A)F77 T0287 154 :LFVMTDE 1yb3A 78 :VFAFPKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13735 # 2cxhA.152.99 read from T0287.t2k.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 2cxhA 80 :IRVYAVE T0287 160 :E 2cxhA 88 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=13737 # 1k3sA.152.79 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 1k3sA 80 :VA T0287 155 :FVMTDE 1k3sA 83 :YRLPQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13739 # 1dp4A.152.375 read from T0287.t2k.many.frag # found chain 1dp4A in template set T0287 152 :LKLFVMTDE 1dp4A 376 :FSLWDMDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13740 # 1o4yA.152.118 read from T0287.t2k.many.frag # found chain 1o4yA in training set T0287 152 :LKLFVMTDE 1o4yA 135 :NAFWTLTDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13741 # 1ysqA.152.146 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1ysqA 145 :AVSIS T0287 158 :TDE 1ysqA 151 :STS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13743 # 1tvgA.152.81 read from T0287.t2k.many.frag # found chain 1tvgA in training set Warning: unaligning (T0287)D159 (1tvgA)S79 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1tvgA 72 :LKIEKST T0287 160 :E 1tvgA 80 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=13745 # 1no5A.153.47 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 T0287 153 :KLFVM 1no5A 48 :DLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=13746 # 1ry9A.153.111 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)K153 (1ry9A)L100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFV 1ry9A 101 :RVV T0287 158 :TDEE 1ry9A 105 :KDDY Number of specific fragments extracted= 2 number of extra gaps= 2 total=13748 # 1jl0A.153.240 read from T0287.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)D159 (1jl0A)E247 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFVMT 1jl0A 241 :TIAITP T0287 160 :EE 1jl0A 248 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13750 # 1l9vA.153.187 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 153 :KLFVMTDEE 1l9vA 188 :KVTLNEDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13751 # 1vl7A.153.79 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 153 :KLFVMTDEE 1vl7A 68 :NVLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13752 # 2biqA.153.159 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 153 :KLFVMTDEE 2biqA 253 :TIITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13753 # 1wd6A.153.68 read from T0287.t2k.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1wd6A 53 :IYLFTDEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13754 # 1g60A.153.118 read from T0287.t2k.many.frag # found chain 1g60A in training set T0287 153 :KLFVMTDEE 1g60A 119 :ILFFSKSKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13755 # 2c60A.153.68 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 T0287 153 :KLFV 2c60A 82 :DLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=13757 # 2czrA.153.72 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 153 :KLFVMTDEE 2czrA 65 :HIVAIPDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13758 # 2a8eA.153.170 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :K 2a8eA 171 :C T0287 155 :FVMTDEE 2a8eA 173 :IQLQKEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13760 # 1dp4A.153.376 read from T0287.t2k.many.frag # found chain 1dp4A in template set Warning: unaligning (T0287)K153 (1dp4A)S377 because E (beta_S) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1dp4A 378 :LWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 1 total=13761 # 1nh1A.153.176 read from T0287.t2k.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)T158 (1nh1A)T182 because G (3-10) conformation "forbidden" or filtered. T0287 153 :KLFVM 1nh1A 177 :TFRVA T0287 159 :DEE 1nh1A 183 :DTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13763 # 3sil.153.139 read from T0287.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0287)K153 (3sil)V143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (3sil)D150 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (3sil)G151 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMTD 3sil 144 :LYKSTD Number of specific fragments extracted= 1 number of extra gaps= 2 total=13764 # 1o4yA.153.119 read from T0287.t2k.many.frag # found chain 1o4yA in training set T0287 153 :KLFVMTDEE 1o4yA 136 :AFWTLTDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13765 # 1h5rA.153.174 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 153 :KLFVMTDEE 1h5rA 175 :GLYFYDNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13766 # 1wvhA.153.110 read from T0287.t2k.many.frag # found chain 1wvhA in template set T0287 153 :KLFVMTDEE 1wvhA 1715 :HLFAELDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13767 # 1vr8A.153.61 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1vr8A 74 :FLYVYK T0287 160 :EE 1vr8A 81 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13769 # 1ysqA.153.147 read from T0287.t2k.many.frag # found chain 1ysqA in training set T0287 153 :KLFVMTDEE 1ysqA 146 :VSISLSTSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13770 # 1k2xA.153.81 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :K 1k2xA 83 :D T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13772 # 1ftrA.153.73 read from T0287.t2k.many.frag # found chain 1ftrA in training set T0287 153 :KLFVMTDEE 1ftrA 74 :TIMIGHNDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13773 # 1gsa.153.222 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1gsa)T232 T0287 153 :KLFVMT 1gsa 223 :LARIPQ T0287 160 :E 1gsa 230 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=13775 # 1fjgP.153.17 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1fjgP 18 :RIVV T0287 158 :TDEE 1fjgP 23 :DARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13777 # 1gycA.153.121 read from T0287.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)K153 (1gycA)G122 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1gycA 123 :PFVVYDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13778 # 1f8eA.153.110 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1f8eA)P197 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFV 1f8eA 191 :SICI T0287 158 :T 1f8eA 196 :G T0287 160 :EE 1f8eA 198 :NN Number of specific fragments extracted= 3 number of extra gaps= 2 total=13781 # 1yu0A.153.109 read from T0287.t2k.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 153 :KL 1yu0A 110 :AI T0287 157 :MTDEE 1yu0A 114 :CDDGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13783 # 2b4vA.153.79 read from T0287.t2k.many.frag # found chain 2b4vA in template set Warning: unaligning (T0287)K153 (2b4vA)D99 because E (beta_S) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 2b4vA 100 :LACMFDDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=13784 # 1vetA.153.89 read from T0287.t2k.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1vetA)A98 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFV 1vetA 90 :VSFI T0287 158 :TDE 1vetA 95 :SSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=13786 # 1k8wA.153.305 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1k8wA)I297 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1k8wA)G301 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFV 1k8wA 294 :MGE T0287 158 :TDE 1k8wA 298 :DDE Number of specific fragments extracted= 2 number of extra gaps= 3 total=13788 # 1yrkA.153.72 read from T0287.t2k.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)E161 (1yrkA)E78 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 1yrkA 70 :QIVLMRAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13789 # 1no5A.154.48 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 T0287 154 :LFVM 1no5A 49 :LAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=13790 # 1zpvA.154.48 read from T0287.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFV 1zpvA 46 :AVV T0287 158 :TDEEV 1zpvA 50 :SDEKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13792 # 2a8eA.154.171 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 2a8eA 173 :IQLQKEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=13793 # 2biqA.154.160 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)V162 (2biqA)G262 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 2biqA 254 :IITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=13794 # 1ry9A.154.112 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFV 1ry9A 101 :RVV T0287 158 :TDEEV 1ry9A 105 :KDDYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13796 # 2c60A.154.69 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 154 :LFV 2c60A 83 :LHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=13798 # 1g60A.154.119 read from T0287.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1g60A 120 :LFFSK T0287 160 :EEV 1g60A 126 :KNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13800 # 1wd6A.154.69 read from T0287.t2k.many.frag # found chain 1wd6A in template set T0287 154 :LFVMTDEEV 1wd6A 53 :IYLFTDEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13801 # 2czrA.154.73 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 154 :LFVMTDEEV 2czrA 66 :IVAIPDNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13802 # 1o4yA.154.120 read from T0287.t2k.many.frag # found chain 1o4yA in training set T0287 154 :LFVMTDEEV 1o4yA 137 :FWTLTDDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=13803 # 1yrkA.154.73 read from T0287.t2k.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1yrkA)A77 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFVMT 1yrkA 71 :IVLMR T0287 161 :EV 1yrkA 78 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13805 # 1ysqA.154.148 read from T0287.t2k.many.frag # found chain 1ysqA in training set T0287 154 :LFVMTDEEV 1ysqA 147 :SISLSTSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13806 # 1gycA.154.122 read from T0287.t2k.many.frag # found chain 1gycA in template set T0287 154 :LFVMTDEEV 1gycA 123 :PFVVYDPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13807 # 1f60B.154.58 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 154 :LFVMTDEEV 1f60B 1171 :NCVVEDDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13808 # 1h5rA.154.175 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 154 :LFVMTDEEV 1h5rA 176 :LYFYDNDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13809 # 1vr8A.154.62 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1vr8A 75 :LYVYK T0287 160 :EEV 1vr8A 81 :EEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13811 # 12asA.154.119 read from T0287.t2k.many.frag # found chain 12asA in template set T0287 154 :LFVMTDEEV 12asA 120 :ERVMGDGER Number of specific fragments extracted= 1 number of extra gaps= 0 total=13812 # 1gw5S.154.66 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 154 :LFVMTDEEV 1gw5S 67 :FCICVDVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=13813 # 1dp4A.154.377 read from T0287.t2k.many.frag # found chain 1dp4A in template set T0287 154 :LFVMTDEEV 1dp4A 378 :LWDMDPETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13814 # 2ajfE.154.63 read from T0287.t2k.many.frag # found chain 2ajfE in template set T0287 154 :LFVMTDEEV 2ajfE 386 :SFVVKGDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13815 # 1k2xA.154.82 read from T0287.t2k.many.frag # found chain 1k2xA in training set T0287 154 :LFVMTDEEV 1k2xA 84 :ACVMDGNTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13816 # 1cfzA.154.73 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 154 :LFVMTDE 1cfzA 74 :MMILRDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13817 # 1wnaA.154.90 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 154 :LFVMTDEEV 1wnaA 91 :EAVVSPGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=13818 # 1vl7A.154.80 read from T0287.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0287)V162 (1vl7A)K77 because G (3-10) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1vl7A 69 :VLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13819 # 1t9fA.154.158 read from T0287.t2k.many.frag # found chain 1t9fA in template set Warning: unaligning (T0287)E161 (1t9fA)I185 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFVMTDE 1t9fA 178 :EVVGTDS T0287 162 :V 1t9fA 186 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=13821 # 1ftrA.154.74 read from T0287.t2k.many.frag # found chain 1ftrA in training set T0287 154 :LFVMTDEEV 1ftrA 75 :IMIGHNDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=13822 # 1vr7A.154.90 read from T0287.t2k.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 154 :LFVMT 1vr7A 79 :DLFTC T0287 162 :V 1vr7A 87 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=13824 # 2a2cA.154.428 read from T0287.t2k.many.frag # found chain 2a2cA in template set T0287 154 :LFVMTDEEV 2a2cA 409 :VSMVPADKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13825 # 1yj7A.154.125 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 154 :LFVMTDEEV 1yj7A 145 :VLVISSPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13826 # 1jl0A.154.241 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 154 :LFVMTDEEV 1jl0A 242 :IAITPEPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13827 # 2a8eA.155.172 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 155 :FVMTDEEVN 2a8eA 173 :IQLQKEEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13828 # 1zpvA.155.49 read from T0287.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)E160 (1zpvA)E52 because E (beta_S) conformation "forbidden" or filtered. T0287 155 :FVMTD 1zpvA 47 :VVSSD T0287 161 :EVN 1zpvA 53 :KQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13830 # 1no5A.155.49 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 T0287 155 :FVM 1no5A 50 :AII Number of specific fragments extracted= 1 number of extra gaps= 1 total=13831 # 1cfzA.155.74 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 155 :FVMTDE 1cfzA 75 :MILRDE T0287 163 :N 1cfzA 83 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=13833 # 2c60A.155.70 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N163 (2c60A)I92 because E (beta_S) conformation "forbidden" or filtered. T0287 155 :FV 2c60A 84 :HY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=13835 # 1xkpC.155.94 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 155 :FVMTDEEVN 1xkpC 95 :ARLRLQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13836 # 1wnaA.155.91 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 155 :FVMTDEEVN 1wnaA 92 :AVVSPGEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13837 # 2biqA.155.161 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)V162 (2biqA)G262 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 2biqA 255 :ITLEDSS T0287 163 :N 2biqA 263 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=13839 # 1yb3A.155.86 read from T0287.t2k.many.frag # found chain 1yb3A in training set T0287 155 :FVMTDEEVN 1yb3A 79 :FAFPKEELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13840 # 1gw5S.155.67 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 155 :FVMTDEEVN 1gw5S 68 :CICVDVNDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13841 # 1h5rA.155.176 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 155 :FVMTDEEVN 1h5rA 177 :YFYDNDVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13842 # 1ysqA.155.149 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FV 1ysqA 148 :IS T0287 158 :TDEEVN 1ysqA 151 :STSRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13844 # 2b5iC.155.59 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 155 :FVMTDEEVN 2b5iC 93 :CQLQKKEIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=13845 # 1ry9A.155.113 read from T0287.t2k.many.frag # found chain 1ry9A in template set T0287 155 :FVMTDEEVN 1ry9A 102 :VVIKDDYVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=13846 # 1f60B.155.59 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 155 :FVMTDEEVN 1f60B 1172 :CVVEDDKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13847 # 1g60A.155.120 read from T0287.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)N163 (1g60A)T129 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1g60A 121 :FFSKSKNH Number of specific fragments extracted= 1 number of extra gaps= 1 total=13848 # 1vr8A.155.63 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1vr8A 76 :YVYK T0287 160 :EEVN 1vr8A 81 :EEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13850 # 12asA.155.120 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTD 12asA 121 :RVMGD T0287 161 :EV 12asA 127 :ER Number of specific fragments extracted= 2 number of extra gaps= 2 total=13852 # 1t6aA.155.71 read from T0287.t2k.many.frag # found chain 1t6aA in template set T0287 155 :FVMTDEEVN 1t6aA 71 :SVRTAGEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=13853 # 1yj7A.155.126 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 155 :FVMTDEEVN 1yj7A 146 :LVISSPEVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13854 # 1wd6A.155.70 read from T0287.t2k.many.frag # found chain 1wd6A in template set T0287 155 :FVMTDEEVN 1wd6A 54 :YLFTDEKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13855 # 1gycA.155.123 read from T0287.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)D159 (1gycA)D128 because E (beta_S) conformation "forbidden" or filtered. T0287 155 :FVMT 1gycA 124 :FVVY T0287 160 :EEVN 1gycA 129 :PKDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13857 # 2a90A.155.27 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMTD 2a90A 49 :WEFES T0287 162 :VN 2a90A 56 :KW Number of specific fragments extracted= 2 number of extra gaps= 1 total=13859 # 1uylA.155.186 read from T0287.t2k.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)V162 (1uylA)Q194 because G (3-10) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 1uylA 187 :ILHLKED T0287 163 :N 1uylA 195 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=13861 # 2czrA.155.74 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E160 (2czrA)N72 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FVMTD 2czrA 67 :VAIPD T0287 161 :EVN 2czrA 73 :GVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=13863 # 1pv5A.155.222 read from T0287.t2k.many.frag # found chain 1pv5A in training set T0287 155 :FVMTDEEVN 1pv5A 220 :QIDSDDDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=13864 # 1ln1A.155.41 read from T0287.t2k.many.frag # found chain 1ln1A in template set Warning: unaligning (T0287)N163 (1ln1A)G50 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1ln1A 42 :YRLLDKKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=13865 # 1yrkA.155.74 read from T0287.t2k.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1yrkA 72 :VLMR T0287 160 :EEVN 1yrkA 77 :AEEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13867 # 2ajfE.155.64 read from T0287.t2k.many.frag # found chain 2ajfE in template set T0287 155 :FVMTDEEVN 2ajfE 387 :FVVKGDDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13868 # 1t9fA.155.159 read from T0287.t2k.many.frag # found chain 1t9fA in template set Warning: unaligning (T0287)N163 (1t9fA)G187 because G (3-10) conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1t9fA 179 :VVGTDSIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=13869 # 1cfzA.156.75 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 156 :VMTDE 1cfzA 76 :ILRDE T0287 163 :NF 1cfzA 83 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13871 # 1zpvA.156.50 read from T0287.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1zpvA 48 :V T0287 158 :TDEEVNF 1zpvA 50 :SDEKQDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=13873 # 1no5A.156.50 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 156 :VM 1no5A 51 :II Number of specific fragments extracted= 1 number of extra gaps= 1 total=13874 # 2a8eA.156.173 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 156 :VMTDEEVNF 2a8eA 174 :QLQKEEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13875 # 2c60A.156.71 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 156 :V 2c60A 85 :Y T0287 159 :DE 2c60A 88 :NE T0287 163 :NF 2c60A 92 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13878 # 1wnaA.156.92 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 156 :VMTDEEVNF 1wnaA 93 :VVSPGEMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13879 # 1h5rA.156.177 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 156 :VMTDEEVNF 1h5rA 178 :FYDNDVVQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=13880 # 12asA.156.121 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTD 12asA 122 :VMGD T0287 161 :EVNF 12asA 127 :ERQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=13882 # 1xkpC.156.95 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 156 :VMTDEEVNF 1xkpC 96 :RLRLQELDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13883 # 2b5iC.156.60 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 156 :VMTDEEVNF 2b5iC 94 :QLQKKEIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13884 # 1yb3A.156.87 read from T0287.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1yb3A 80 :AFPKEEL T0287 164 :F 1yb3A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=13886 # 1t6aA.156.72 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 T0287 156 :VMTDEEVN 1t6aA 72 :VRTAGEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=13887 # 1f60B.156.60 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 156 :VMTDEEVNF 1f60B 1173 :VVEDDKVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13888 # 1gw5S.156.68 read from T0287.t2k.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)T158 (1gw5S)V71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1gw5S)N76 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :VM 1gw5S 69 :IC T0287 159 :DEEV 1gw5S 72 :DVND T0287 164 :F 1gw5S 77 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=13891 # 1vr8A.156.64 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMT 1vr8A 77 :VYK T0287 160 :EEVNF 1vr8A 81 :EEAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13893 # 1zn6A.156.183 read from T0287.t2k.many.frag # found chain 1zn6A in template set T0287 156 :VMTDEEVNF 1zn6A 184 :ILPDGAYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13894 # 1yj7A.156.127 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)D159 (1yj7A)S150 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :VMT 1yj7A 147 :VIS T0287 160 :EEVNF 1yj7A 151 :PEVNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13896 # 2a90A.156.28 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTD 2a90A 50 :EFES T0287 161 :EVNF 2a90A 55 :GKWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13898 # 1ysqA.156.150 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1ysqA 149 :S T0287 158 :TDEEVNF 1ysqA 151 :STSRLKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13900 # 1zh1A.156.96 read from T0287.t2k.many.frag # found chain 1zh1A in template set T0287 156 :VMTDEEVNF 1zh1A 132 :GMTTDNVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=13901 # 1uwcA.156.225 read from T0287.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 156 :VMT 1uwcA 226 :VCT T0287 160 :EEV 1uwcA 230 :DEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13903 # 2czrA.156.75 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTDE 2czrA 68 :AIPDN T0287 162 :VNF 2czrA 74 :VFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=13905 # 1ry9A.156.114 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)V162 (1ry9A)V109 because G (3-10) conformation "forbidden" or filtered. T0287 156 :VMTDEE 1ry9A 103 :VIKDDY T0287 163 :NF 1ry9A 110 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13907 # 1yymG.156.84 read from T0287.t2k.many.frag # found chain 1yymG in template set Warning: unaligning (T0287)E161 (1yymG)K232 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTDE 1yymG 227 :KCNDK T0287 162 :VNF 1yymG 233 :FNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13909 # 1pv5A.156.223 read from T0287.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0287)M157 (1pv5A)D222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1pv5A)I227 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1pv5A)D228 because L (left) conformation "forbidden" or filtered. T0287 156 :V 1pv5A 221 :I T0287 158 :TDEE 1pv5A 223 :SDDD T0287 164 :F 1pv5A 229 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=13912 # 1dmgA.156.16 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 156 :VMTDEEVNF 1dmgA 18 :EISDFVFNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13913 # 1xg8A.156.12 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)M157 (1xg8A)G5 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1xg8A 4 :Y T0287 158 :TDEEVNF 1xg8A 6 :ADVICAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13915 # 1uylA.156.187 read from T0287.t2k.many.frag # found chain 1uylA in training set T0287 156 :VMTDEEVNF 1uylA 188 :LHLKEDQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13916 # 1yreA.156.177 read from T0287.t2k.many.frag # found chain 1yreA in template set Warning: unaligning (T0287)V156 (1yreA)S176 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEVNF 1yreA 177 :ITDHEWPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=13917 # 1jiwI.156.28 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 156 :VMTDEEVNF 1jiwI 29 :ELRDSEVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13918 # 1cfzA.157.76 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 157 :MTDE 1cfzA 77 :LRDE T0287 163 :NFY 1cfzA 83 :PAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13920 # 1zpvA.157.51 read from T0287.t2k.many.frag # found chain 1zpvA in template set T0287 157 :MTDEEVNFY 1zpvA 49 :SSDEKQDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13921 # 2c60A.157.72 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N163 (2c60A)I92 because E (beta_S) conformation "forbidden" or filtered. T0287 159 :DE 2c60A 88 :NE T0287 164 :FY 2c60A 93 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13923 # 1no5A.157.51 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 157 :M 1no5A 52 :I T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=13925 # 1wnaA.157.93 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 157 :MTDEEVNFY 1wnaA 94 :VSPGEMTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13926 # 1h5rA.157.178 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 157 :MTDEEVNFY 1h5rA 179 :YDNDVVQMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13927 # 12asA.157.122 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 157 :MTD 12asA 123 :MGD T0287 161 :EVNFY 12asA 127 :ERQFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13929 # 2b5iC.157.61 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 157 :MTDEEVNFY 2b5iC 95 :LQKKEIHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=13930 # 1xkpC.157.96 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 157 :MTDEEVNFY 1xkpC 97 :LRLQELDTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=13931 # 1f60B.157.61 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 157 :MTDEEVNFY 1f60B 1174 :VEDDKVSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13932 # 2a8eA.157.174 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)F164 (2a8eA)N182 because G (3-10) conformation "forbidden" or filtered. T0287 157 :MTDEEVN 2a8eA 175 :LQKEEVL T0287 165 :Y 2a8eA 183 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=13934 # 1t6aA.157.73 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 157 :MTD 1t6aA 73 :RTA T0287 161 :EVN 1t6aA 77 :EET Number of specific fragments extracted= 2 number of extra gaps= 2 total=13936 # 1gw5S.157.69 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 157 :MTDEEVNFY 1gw5S 70 :CVDVNDNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13937 # 1yj7A.157.128 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)F164 (1yj7A)L155 because G (3-10) conformation "forbidden" or filtered. T0287 157 :MTDEEVN 1yj7A 148 :ISSPEVN T0287 165 :Y 1yj7A 156 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=13939 # 1yb3A.157.88 read from T0287.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEV 1yb3A 81 :FPKEEL T0287 164 :FY 1yb3A 88 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13941 # 1zh1A.157.97 read from T0287.t2k.many.frag # found chain 1zh1A in template set T0287 157 :MTDEEVNFY 1zh1A 133 :MTTDNVKCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13942 # 2a90A.157.29 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTDE 2a90A 51 :FESR T0287 162 :VNFY 2a90A 56 :KWLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13944 # 1uwcA.157.226 read from T0287.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 157 :MT 1uwcA 227 :CT T0287 160 :EEV 1uwcA 230 :DEV T0287 165 :Y 1uwcA 235 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=13947 # 1h70A.157.194 read from T0287.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)D159 (1h70A)P196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1h70A)A202 because G (3-10) conformation "forbidden" or filtered. T0287 157 :MT 1h70A 194 :EI T0287 160 :EEVNF 1h70A 197 :EEESY Number of specific fragments extracted= 2 number of extra gaps= 2 total=13949 # 1xg8A.157.13 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)M157 (1xg8A)G5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1xg8A)A6 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEVNFY 1xg8A 7 :DVICASC Number of specific fragments extracted= 1 number of extra gaps= 1 total=13950 # 1zn6A.157.184 read from T0287.t2k.many.frag # found chain 1zn6A in template set T0287 157 :MTDEEVNFY 1zn6A 185 :LPDGAYGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=13951 # 1pbjA.157.101 read from T0287.t2k.many.frag # found chain 1pbjA in training set T0287 157 :MTDEEVNFY 1pbjA 102 :EEDDEIIGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13952 # 2czrA.157.76 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (2czrA)Y76 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDE 2czrA 69 :IPDN T0287 162 :VN 2czrA 74 :VF T0287 165 :Y 2czrA 77 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=13955 # 1vr8A.157.65 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MT 1vr8A 78 :YK T0287 160 :EEVNFY 1vr8A 81 :EEAKKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13957 # 1n9pA.157.151 read from T0287.t2k.many.frag # found chain 1n9pA in training set Warning: unaligning (T0287)Y165 (1n9pA)G324 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTDEEVNF 1n9pA 316 :YTEDEVLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=13958 # 1o97D.157.287 read from T0287.t2k.many.frag # found chain 1o97D in training set T0287 157 :MTDEEVNFY 1o97D 288 :NTDPGASIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13959 # 1t3gA.157.19 read from T0287.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFY 1t3gA 424 :GEEERFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13960 # 1m9zA.157.41 read from T0287.t2k.many.frag # found chain 1m9zA in training set Warning: unaligning (T0287)E161 (1m9zA)N71 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDE 1m9zA 67 :KNDE T0287 162 :VNFY 1m9zA 72 :ITLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13962 # 1vr7A.157.93 read from T0287.t2k.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 157 :MT 1vr7A 82 :TC T0287 162 :VNFY 1vr7A 87 :VDPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=13964 # 1kzfA.157.184 read from T0287.t2k.many.frag # found chain 1kzfA in training set Warning: unaligning (T0287)E161 (1kzfA)E169 because N (gamma') conformation "forbidden" or filtered. T0287 157 :MTDE 1kzfA 165 :LTEK T0287 162 :VNFY 1kzfA 170 :RIYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13966 # 1cfzA.158.77 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)D159 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 158 :T 1cfzA 78 :R T0287 160 :E 1cfzA 80 :E T0287 163 :NFYA 1cfzA 83 :PALF Number of specific fragments extracted= 3 number of extra gaps= 2 total=13969 # 2c60A.158.73 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYA 2c60A 92 :ILLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=13971 # 1zpvA.158.52 read from T0287.t2k.many.frag # found chain 1zpvA in template set T0287 158 :TDEEVNFYA 1zpvA 50 :SDEKQDFTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=13972 # 1wnaA.158.94 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 158 :TDEEVNFYA 1wnaA 95 :SPGEMTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13973 # 1h5rA.158.179 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 158 :TDEEVNFYA 1h5rA 180 :DNDVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13974 # 1gw5S.158.70 read from T0287.t2k.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)T158 (1gw5S)V71 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEVNFYA 1gw5S 72 :DVNDNNLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13975 # 12asA.158.123 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TD 12asA 124 :GD T0287 161 :EV 12asA 127 :ER T0287 164 :FYA 12asA 130 :FST Number of specific fragments extracted= 3 number of extra gaps= 2 total=13978 # 1no5A.158.52 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=13979 # 1uwcA.158.227 read from T0287.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :T 1uwcA 228 :T T0287 160 :EEV 1uwcA 230 :DEV T0287 165 :YA 1uwcA 235 :CE Number of specific fragments extracted= 3 number of extra gaps= 2 total=13982 # 1t6aA.158.74 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 158 :TD 1t6aA 74 :TA T0287 161 :EVN 1t6aA 77 :EET T0287 166 :A 1t6aA 82 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=13985 # 1h70A.158.195 read from T0287.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)Y165 (1h70A)A202 because G (3-10) conformation "forbidden" or filtered. T0287 158 :TDEEVNF 1h70A 195 :IPEEESY T0287 166 :A 1h70A 203 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=13987 # 2a90A.158.30 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TD 2a90A 52 :ES T0287 162 :VNFYA 2a90A 56 :KWLPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=13989 # 1xkpC.158.97 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 158 :TDEEVNFYA 1xkpC 98 :RLQELDTHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13990 # 1yj7A.158.129 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 158 :TDEEVNFYA 1yj7A 149 :SSPEVNLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13991 # 1f60B.158.62 read from T0287.t2k.many.frag # found chain 1f60B in training set Warning: unaligning (T0287)N163 (1f60B)S1180 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDEEV 1f60B 1175 :EDDKV T0287 164 :FYA 1f60B 1181 :LDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13993 # 2b5iC.158.62 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 158 :TDEEVNFYA 2b5iC 96 :QKKEIHLYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13994 # 1zh1A.158.98 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E160 (1zh1A)D136 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TD 1zh1A 134 :TT T0287 161 :EVNFYA 1zh1A 137 :NVKCPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13996 # 1xg8A.158.14 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E161 (1xg8A)I9 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDE 1xg8A 6 :ADV T0287 162 :VNFYA 1xg8A 10 :CASCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13998 # 1pbjA.158.102 read from T0287.t2k.many.frag # found chain 1pbjA in training set T0287 158 :TDEEVNFYA 1pbjA 103 :EDDEIIGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13999 # 2btiA.158.37 read from T0287.t2k.many.frag # found chain 2btiA in template set T0287 158 :TDEEVNFYA 2btiA 36 :APKEVSVHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14000 # 1t3gA.158.20 read from T0287.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFYA 1t3gA 424 :GEEERFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14001 # 1l3lA.158.138 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)E160 (1l3lA)R141 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TD 1l3lA 139 :LD T0287 161 :EVNFYA 1l3lA 142 :EIDAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14003 # 1zn6A.158.185 read from T0287.t2k.many.frag # found chain 1zn6A in template set T0287 158 :TDEEVNFYA 1zn6A 186 :PDGAYGDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14004 # 1o97D.158.288 read from T0287.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)T158 (1o97D)T289 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEEVNFYA 1o97D 290 :DPGASIFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=14005 # 1uylA.158.189 read from T0287.t2k.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)V162 (1uylA)Q194 because G (3-10) conformation "forbidden" or filtered. T0287 158 :TDEE 1uylA 190 :LKED T0287 163 :NFYA 1uylA 195 :TEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14007 # 1mkaA.158.59 read from T0287.t2k.many.frag # found chain 1mkaA in template set T0287 158 :TDEEVNFYA 1mkaA 60 :INPDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14008 # 2a8eA.158.175 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)A166 (2a8eA)N184 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 2a8eA 176 :QKEEVLNM Number of specific fragments extracted= 1 number of extra gaps= 1 total=14009 # 1ngmB.158.31 read from T0287.t2k.many.frag # found chain 1ngmB in template set T0287 158 :TDEEVNFYA 1ngmB 466 :DDEELNAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14010 # 1lbu.158.162 read from T0287.t2k.many.frag # found chain 1lbu in training set T0287 158 :TDEEVNFYA 1lbu 163 :GAGSQGFCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14011 # 1yzxA.158.189 read from T0287.t2k.many.frag # found chain 1yzxA in template set Warning: unaligning (T0287)D159 (1yzxA)D191 because L (left) conformation "forbidden" or filtered. T0287 158 :T 1yzxA 190 :V T0287 160 :EEVNFYA 1yzxA 192 :GQTHMLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=14013 # 1gw5S.159.71 read from T0287.t2k.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)N163 (1gw5S)N76 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DEEV 1gw5S 72 :DVND T0287 164 :FYAN 1gw5S 77 :NLAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14015 # 1cfzA.159.78 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)D159 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 160 :E 1cfzA 80 :E T0287 163 :NFYAN 1cfzA 83 :PALFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=14017 # 1wnaA.159.95 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 159 :DEEVNFYAN 1wnaA 96 :PGEMTALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14018 # 1l3lA.159.139 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 159 :DEEVNFYAN 1l3lA 140 :DREIDAVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14019 # 1h5rA.159.180 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 159 :DEEVNFYAN 1h5rA 181 :NDVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14020 # 2c60A.159.74 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)A166 (2c60A)K95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DE 2c60A 88 :NE T0287 163 :NFY 2c60A 92 :ILL Number of specific fragments extracted= 2 number of extra gaps= 2 total=14022 # 1xkpC.159.98 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 159 :DEEVNFYAN 1xkpC 99 :LQELDTHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14023 # 1xg8A.159.15 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 159 :DEEVNFYAN 1xg8A 7 :DVICASCVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14024 # 12asA.159.124 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEV 12asA 125 :DGER T0287 164 :FYAN 12asA 130 :FSTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14026 # 1h70A.159.196 read from T0287.t2k.many.frag # found chain 1h70A in training set T0287 159 :DEEVNFYAN 1h70A 196 :PEEESYAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14027 # 1zh1A.159.99 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)N163 (1zh1A)K139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1zh1A)C142 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEEV 1zh1A 135 :TDNV T0287 164 :FY 1zh1A 140 :CP T0287 167 :N 1zh1A 143 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=14030 # 1xdnA.159.68 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1xdnA)D116 Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 167 :N 1xdnA 124 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=14032 # 1zpvA.159.53 read from T0287.t2k.many.frag # found chain 1zpvA in template set T0287 159 :DEEVNFYAN 1zpvA 51 :DEKQDFTYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14033 # 1f60B.159.63 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 159 :DEEVNFYAN 1f60B 1176 :DDKVSLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14034 # 2a90A.159.31 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2a90A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :D 2a90A 53 :S T0287 162 :VNFYA 2a90A 56 :KWLPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=14036 # 1yj7A.159.130 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 159 :DEEVNFYAN 1yj7A 150 :SPEVNLAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14037 # 1mkaA.159.60 read from T0287.t2k.many.frag # found chain 1mkaA in template set T0287 159 :DEEVNFYAN 1mkaA 61 :NPDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=14038 # 1ngmB.159.32 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)D159 (1ngmB)D467 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 160 :EEVNFY 1ngmB 468 :EELNAH T0287 167 :N 1ngmB 475 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=14040 # 1lbu.159.163 read from T0287.t2k.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :DEEV 1lbu 164 :AGSQ T0287 164 :FYAN 1lbu 169 :FCAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14042 # 1t0tV.159.150 read from T0287.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)D159 (1t0tV)Q151 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1t0tV)Y157 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EVNF 1t0tV 153 :NDNW T0287 166 :AN 1t0tV 158 :ML Number of specific fragments extracted= 2 number of extra gaps= 2 total=14044 # 1uylA.159.190 read from T0287.t2k.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)D159 (1uylA)K191 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1uylA 192 :EDQTEYLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14045 # 1uwcA.159.228 read from T0287.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)E161 (1uwcA)E231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :DE 1uwcA 229 :GD T0287 162 :V 1uwcA 232 :V T0287 165 :YAN 1uwcA 235 :CEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=14048 # 1o97D.159.289 read from T0287.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)N167 (1o97D)I298 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEEVNFYA 1o97D 290 :DPGASIFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=14049 # 2b5iC.159.63 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 159 :DEEVNFYAN 2b5iC 97 :KKEIHLYQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14050 # 1qo7A.159.366 read from T0287.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0287)N163 (1qo7A)G373 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEV 1qo7A 369 :HAEG T0287 164 :FYAN 1qo7A 374 :HFAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14052 # 1t6aA.159.75 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)D159 (1t6aA)A75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 160 :EEVN 1t6aA 76 :GEET T0287 166 :AN 1t6aA 82 :DI Number of specific fragments extracted= 2 number of extra gaps= 2 total=14054 # 1rcwA.159.102 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 159 :DEEVNFYAN 1rcwA 103 :PEELEAHEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14055 # 1no5A.159.53 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=14056 # 2a8eA.159.176 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 159 :DEEVNFYAN 2a8eA 177 :KEEVLNMNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14057 # 1i60A.159.248 read from T0287.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)D159 (1i60A)R249 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1i60A 250 :PEYYKLTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14058 # 1gw5S.160.72 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 160 :EEVNFYANL 1gw5S 73 :VNDNNLAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14059 # 1h5rA.160.181 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)N167 (1h5rA)N189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 T0287 160 :EEVNFYA 1h5rA 182 :DVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14060 # 1xg8A.160.16 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E161 (1xg8A)I9 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :E 1xg8A 8 :V T0287 162 :VNFYANL 1xg8A 10 :CASCVNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14062 # 1l3lA.160.140 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 160 :EEVNFYANL 1l3lA 141 :REIDAVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14063 # 2c60A.160.75 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 160 :E 2c60A 89 :E T0287 163 :NFYANL 2c60A 92 :ILLKNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14065 # 1xkpC.160.99 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 160 :EEVNFYANL 1xkpC 100 :QELDTHGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14066 # 1xdnA.160.69 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)F164 (1xdnA)F121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 160 :EEVN 1xdnA 117 :PNEN T0287 166 :ANL 1xdnA 123 :GYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=14068 # 1t0tV.160.151 read from T0287.t2k.many.frag # found chain 1t0tV in training set T0287 160 :EEVNFYANL 1t0tV 152 :GNDNWYMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14069 # 1zh1A.160.100 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1zh1A)C142 because G (3-10) conformation "forbidden" or filtered. T0287 160 :E 1zh1A 136 :D T0287 162 :VNFY 1zh1A 138 :VKCP T0287 167 :NL 1zh1A 143 :QV Number of specific fragments extracted= 3 number of extra gaps= 2 total=14072 # 1f60B.160.64 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 160 :EEVNFYANL 1f60B 1177 :DKVSLDDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14073 # 1lbu.160.164 read from T0287.t2k.many.frag # found chain 1lbu in training set T0287 160 :EEVNFYANL 1lbu 165 :GSQGFCALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14074 # 1rcwA.160.103 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1rcwA 104 :EELEAHE T0287 168 :L 1rcwA 112 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=14076 # 1mkaA.160.61 read from T0287.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 T0287 160 :EEVNFYAN 1mkaA 62 :PDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=14077 # 1qnrA.160.129 read from T0287.t2k.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)E160 (1qnrA)N130 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1qnrA 131 :ATTWYTNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=14078 # 12asA.160.125 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EV 12asA 127 :ER T0287 164 :FYANL 12asA 130 :FSTLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=14080 # 1h70A.160.197 read from T0287.t2k.many.frag # found chain 1h70A in training set T0287 160 :EEVNFYANL 1h70A 197 :EEESYAANC Number of specific fragments extracted= 1 number of extra gaps= 0 total=14081 # 1ngmB.160.33 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)N163 (1ngmB)N471 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 160 :EEV 1ngmB 468 :EEL T0287 164 :FY 1ngmB 472 :AH T0287 167 :NL 1ngmB 475 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=14084 # 1zgkA.160.240 read from T0287.t2k.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 Warning: unaligning (T0287)N167 (1zgkA)P549 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :E 1zgkA 542 :E T0287 163 :NFYA 1zgkA 545 :TFVA T0287 168 :L 1zgkA 550 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=14087 # 1yj7A.160.131 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)N167 (1yj7A)S158 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1yj7A 151 :PEVNLAP T0287 168 :L 1yj7A 159 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=14089 # 2ex0A.160.376 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 160 :EEVNFYANL 2ex0A 401 :SQVIFWDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14090 # 1fo8A.160.72 read from T0287.t2k.many.frag # found chain 1fo8A in training set T0287 160 :EEVNFYANL 1fo8A 177 :DHRKFQGYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14091 # 2b5iC.160.64 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 160 :EEVNFYANL 2b5iC 98 :KEIHLYQTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14092 # 1wnaA.160.96 read from T0287.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)N167 (1wnaA)D104 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1wnaA 97 :GEMTALL T0287 168 :L 1wnaA 105 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=14094 # 1o97D.160.290 read from T0287.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1o97D)K300 T0287 160 :EEVNFYAN 1o97D 291 :PGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14095 # 1dmgA.160.20 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 160 :EEVNFYANL 1dmgA 22 :FVFNIDPNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14096 # 1zavA.160.126 read from T0287.t2k.many.frag # found chain 1zavA in template set T0287 160 :EEVNFYANL 1zavA 126 :EEVENIAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14097 # 1i60A.160.249 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 160 :EEVNFYANL 1i60A 250 :PEYYKLTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14098 # 1dqzA.160.42 read from T0287.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)N167 (1dqzA)N52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1dqzA 45 :DYNGWDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14099 # 1vk4A.160.186 read from T0287.t2k.many.frag # found chain 1vk4A in template set T0287 160 :EEVNFYANL 1vk4A 175 :REAETLTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14100 # 1h8eG.160.187 read from T0287.t2k.many.frag # found chain 1h8eG in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h8eG)D197 T0287 160 :EEVNFYAN 1h8eG 188 :ESMSIYDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14101 # 1gw5S.161.73 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 161 :EVNFYANLK 1gw5S 74 :NDNNLAYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14102 # 1xg8A.161.17 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 161 :EVNFYANLK 1xg8A 9 :ICASCVNAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14103 # 1h5rA.161.182 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 161 :EVNFYAN 1h5rA 183 :VVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=14104 # 2c60A.161.76 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 163 :NFYANLK 2c60A 92 :ILLKNQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14105 # 1l3lA.161.141 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)E161 (1l3lA)E142 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANLK 1l3lA 143 :IDAVAAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14106 # 1t0tV.161.152 read from T0287.t2k.many.frag # found chain 1t0tV in training set T0287 161 :EVNFYANLK 1t0tV 153 :NDNWYMLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14107 # 1qnrA.161.130 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 161 :EVNFYANLK 1qnrA 131 :ATTWYTNTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14108 # 1xdnA.161.70 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)N163 (1xdnA)N120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EV 1xdnA 118 :NE T0287 164 :FY 1xdnA 121 :FF T0287 167 :NLK 1xdnA 124 :YHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=14111 # 1dmgA.161.21 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 161 :EVNFYANLK 1dmgA 23 :VFNIDPNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14112 # 1rcwA.161.104 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 161 :EVNFYANLK 1rcwA 105 :ELEAHEPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14113 # 2ex0A.161.377 read from T0287.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)N163 (2ex0A)I404 because E (beta_S) conformation "forbidden" or filtered. T0287 161 :EV 2ex0A 402 :QV T0287 164 :FYANLK 2ex0A 405 :FWDSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14115 # 1fo8A.161.73 read from T0287.t2k.many.frag # found chain 1fo8A in training set T0287 161 :EVNFYANLK 1fo8A 178 :HRKFQGYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14116 # 1lbu.161.165 read from T0287.t2k.many.frag # found chain 1lbu in training set T0287 161 :EVNFYANLK 1lbu 166 :SQGFCALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14117 # 1josA.161.60 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 161 :EVNFYANLK 1josA 61 :EMAIEQGMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14118 # 1ngmB.161.34 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 161 :EVNFY 1ngmB 469 :ELNAH T0287 167 :NLK 1ngmB 475 :LNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14120 # 1mkaA.161.62 read from T0287.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1mkaA)F71 T0287 161 :EVNFYAN 1mkaA 63 :DLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=14121 # 1vk4A.161.187 read from T0287.t2k.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1vk4A 176 :EAETLT T0287 168 :LK 1vk4A 183 :TN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14123 # 1hp1A.161.297 read from T0287.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1hp1A)R332 Warning: unaligning (T0287)Y165 (1hp1A)T336 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNF 1hp1A 333 :VLY T0287 166 :ANLK 1hp1A 337 :PEIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=14125 # 1xkpC.161.100 read from T0287.t2k.many.frag # found chain 1xkpC in training set Warning: unaligning (T0287)N163 (1xkpC)D103 because E (beta_S) conformation "forbidden" or filtered. T0287 161 :EV 1xkpC 101 :EL T0287 164 :FYANLK 1xkpC 104 :THGLQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14127 # 1e0tA.161.314 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LK 1e0tA 322 :LE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14128 # 1dqzA.161.43 read from T0287.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYAN 1dqzA 46 :YNGWDIN T0287 169 :K 1dqzA 54 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=14130 # 1rz2A.161.143 read from T0287.t2k.many.frag # found chain 1rz2A in training set T0287 161 :EVNFYANLK 1rz2A 144 :DGSMFGSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14131 # 1zdyA.161.127 read from T0287.t2k.many.frag # found chain 1zdyA in template set T0287 161 :EVNFYANLK 1zdyA 128 :NMPGVAELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14132 # 1t0hB.161.87 read from T0287.t2k.many.frag # found chain 1t0hB in template set T0287 161 :EVNFYANLK 1t0hB 289 :RSNTRSSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14133 # 1thtA.161.239 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)E161 (1thtA)S240 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFYANLK 1thtA 241 :HDLGENLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=14134 # 1zh1A.161.101 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :VNFYANLK 1zh1A 138 :VKCPCQVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=14135 # 1i60A.161.250 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 161 :EVNFYANLK 1i60A 251 :EYYKLTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14136 # 1zgkA.161.241 read from T0287.t2k.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 T0287 163 :NFYANLK 1zgkA 545 :TFVAPMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14137 # 1zavA.161.127 read from T0287.t2k.many.frag # found chain 1zavA in template set T0287 161 :EVNFYANLK 1zavA 127 :EVENIAKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14138 # 12asA.161.126 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EV 12asA 127 :ER T0287 164 :FYANLK 12asA 130 :FSTLKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14140 # 1xg8A.162.18 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 1xg8A 10 :CASCVNA T0287 170 :T 1xg8A 18 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=14142 # 1gw5S.162.74 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 162 :VNFYANLKT 1gw5S 75 :DNNLAYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14143 # 2c60A.162.77 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 2c60A 92 :ILLK T0287 168 :LKT 2c60A 97 :QDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=14145 # 1h5rA.162.183 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 162 :VNFYAN 1h5rA 184 :VQMAKN T0287 170 :T 1h5rA 192 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=14147 # 2bgcA.162.205 read from T0287.t2k.many.frag # found chain 2bgcA in template set T0287 162 :VNFYANLKT 2bgcA 205 :CFYVQNLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14148 # 1dmgA.162.22 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 162 :VNFYANLKT 1dmgA 24 :FNIDPNYDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14149 # 1e0tA.162.315 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKT 1e0tA 322 :LEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14150 # 1josA.162.61 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 162 :VNFYANLKT 1josA 62 :MAIEQGMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14151 # 1l3lA.162.142 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 162 :VNFYANLKT 1l3lA 143 :IDAVAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14152 # 1vk4A.162.188 read from T0287.t2k.many.frag # found chain 1vk4A in template set T0287 162 :VNFYANLKT 1vk4A 177 :AETLTGTND Number of specific fragments extracted= 1 number of extra gaps= 0 total=14153 # 1qnrA.162.131 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 162 :VNFYANLKT 1qnrA 132 :TTWYTNTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14154 # 1rcwA.162.105 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 162 :VNFYANLKT 1rcwA 106 :LEAHEPSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14155 # 1thtA.162.240 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)F164 (1thtA)L243 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1thtA)N246 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VN 1thtA 241 :HD T0287 165 :YA 1thtA 244 :GE T0287 168 :LKT 1thtA 247 :LVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=14158 # 2ex0A.162.378 read from T0287.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)K169 (2ex0A)K410 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 2ex0A 403 :VIFWDSL T0287 170 :T 2ex0A 411 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=14160 # 1t0tV.162.153 read from T0287.t2k.many.frag # found chain 1t0tV in training set T0287 162 :VNFYANLKT 1t0tV 154 :DNWYMLSME Number of specific fragments extracted= 1 number of extra gaps= 0 total=14161 # 1t0hB.162.88 read from T0287.t2k.many.frag # found chain 1t0hB in template set T0287 162 :VNFYANLKT 1t0hB 290 :SNTRSSLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14162 # 1rz2A.162.144 read from T0287.t2k.many.frag # found chain 1rz2A in training set T0287 162 :VNFYANLKT 1rz2A 145 :GSMFGSLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14163 # 1zavA.162.128 read from T0287.t2k.many.frag # found chain 1zavA in template set T0287 162 :VNFYANLKT 1zavA 128 :VENIAKLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14164 # 1hp1A.162.298 read from T0287.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)N163 (1hp1A)L334 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1hp1A)P337 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 1hp1A 333 :V T0287 164 :FY 1hp1A 335 :YT T0287 167 :NLKT 1hp1A 338 :EIAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=14167 # 1xdnA.162.71 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 162 :VNF 1xdnA 119 :ENF T0287 166 :ANLKT 1xdnA 123 :GYHIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14169 # 1g5aA.162.105 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFYA 1g5aA 106 :DLFAG T0287 168 :LKT 1g5aA 112 :LKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=14171 # 1zdyA.162.128 read from T0287.t2k.many.frag # found chain 1zdyA in template set T0287 162 :VNFYANLKT 1zdyA 129 :MPGVAELSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14172 # 1dqzA.162.44 read from T0287.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K169 (1dqzA)P54 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VNFYAN 1dqzA 47 :NGWDIN T0287 170 :T 1dqzA 55 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=14174 # 1fo8A.162.74 read from T0287.t2k.many.frag # found chain 1fo8A in training set T0287 162 :VNFYANLKT 1fo8A 179 :RKFQGYYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14175 # 2ex0A.162.177 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 162 :VNFYANLKT 2ex0A 202 :TDYFEKAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14176 # 1ngmB.162.35 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 162 :VNFY 1ngmB 470 :LNAH T0287 167 :NLKT 1ngmB 475 :LNEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14178 # 1i60A.162.251 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 162 :VNFYANLKT 1i60A 252 :YYKLTAEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14179 # 1txoA.162.198 read from T0287.t2k.many.frag # found chain 1txoA in template set Warning: unaligning (T0287)N167 (1txoA)Q207 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VNFYA 1txoA 202 :ILEAL T0287 168 :LKT 1txoA 208 :IPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14181 # 1qgiA.162.120 read from T0287.t2k.many.frag # found chain 1qgiA in training set T0287 162 :VNFYANLKT 1qgiA 121 :KVFCGKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14182 # 2ar0A.162.485 read from T0287.t2k.many.frag # found chain 2ar0A in template set T0287 162 :VNFYANLKT 2ar0A 486 :VLAAEAMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14183 # 1gw5S.163.75 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 163 :NFYANLKTI 1gw5S 76 :NNLAYLEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14184 # 1xg8A.163.19 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 163 :NFYANLKTI 1xg8A 11 :ASCVNAPTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14185 # 1josA.163.62 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 163 :NFYANLKTI 1josA 63 :AIEQGMKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14186 # 1e0tA.163.316 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTI 1e0tA 322 :LEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14187 # 2c60A.163.78 read from T0287.t2k.many.frag # found chain 2c60A in template set T0287 163 :NFYANLKTI 2c60A 92 :ILLKNQDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14188 # 2bgcA.163.206 read from T0287.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)A166 (2bgcA)Q209 because G (3-10) conformation "forbidden" or filtered. T0287 163 :NFY 2bgcA 206 :FYV T0287 167 :NLKTI 2bgcA 210 :NLDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14190 # 1dmgA.163.23 read from T0287.t2k.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1dmgA 26 :IDPNYDVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=14191 # 1h5rA.163.184 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 163 :NFYAN 1h5rA 185 :QMAKN T0287 170 :TI 1h5rA 192 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14193 # 1g5aA.163.106 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFY 1g5aA 107 :LFA T0287 168 :LKTI 1g5aA 112 :LKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14195 # 1uf3A.163.12 read from T0287.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)N163 (1uf3A)N13 because L (left) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1uf3A 14 :PMGDLEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14196 # 2ex0A.163.178 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 163 :NFYANLKTI 2ex0A 203 :DYFEKAEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14197 # 1rcwA.163.106 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 163 :NFYANLKTI 1rcwA 107 :EAHEPSEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14198 # 1l3lA.163.143 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 163 :NFYANLKTI 1l3lA 144 :DAVAAAATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14199 # 1thtA.163.241 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)Y165 (1thtA)G244 because G (3-10) conformation "forbidden" or filtered. T0287 163 :NF 1thtA 242 :DL T0287 166 :ANLKTI 1thtA 245 :ENLVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14201 # 1xdnA.163.72 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 163 :NFYANLKTI 1xdnA 120 :NFFGYHILI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14202 # 1vk4A.163.189 read from T0287.t2k.many.frag # found chain 1vk4A in template set T0287 163 :NFYANLKTI 1vk4A 178 :ETLTGTNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14203 # 1vliA.163.260 read from T0287.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE at template residue (1vliA)S249 Warning: unaligning (T0287)F164 (1vliA)F250 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1vliA)L252 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 1vliA 251 :A T0287 167 :NLKTI 1vliA 253 :NPDEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=14205 # 1fm0D.163.19 read from T0287.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0287)N167 (1fm0D)D24 because G (3-10) conformation "forbidden" or filtered. T0287 163 :NFYA 1fm0D 20 :EVAA T0287 168 :LKTI 1fm0D 25 :FPTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14207 # 1rz2A.163.145 read from T0287.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 163 :N 1rz2A 146 :S T0287 165 :YANLKTI 1rz2A 148 :FGSLKKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=14209 # 1wo8A.163.104 read from T0287.t2k.many.frag # found chain 1wo8A in template set T0287 163 :NFYANLKTI 1wo8A 105 :PLATNLVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14210 # 1uhvA.163.73 read from T0287.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)A166 (1uhvA)Y77 because D (zeta) conformation "forbidden" or filtered. T0287 163 :NFY 1uhvA 74 :KPF T0287 167 :NLKTI 1uhvA 78 :NFTYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14212 # 1t0hB.163.89 read from T0287.t2k.many.frag # found chain 1t0hB in template set Warning: unaligning (T0287)N167 (1t0hB)S295 because P (beta_P) conformation "forbidden" or filtered. T0287 163 :NFYA 1t0hB 291 :NTRS T0287 168 :LKTI 1t0hB 296 :LAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14214 # 1qnrA.163.132 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 163 :NFYANLKTI 1qnrA 133 :TWYTNTAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14215 # 1rkuA.163.62 read from T0287.t2k.many.frag # found chain 1rkuA in training set T0287 163 :NFYANLKTI 1rkuA 62 :EVIATLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14216 # 1eokA.163.56 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N163 (1eokA)G57 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1eokA)M59 because G (3-10) conformation "forbidden" or filtered. T0287 164 :F 1eokA 58 :M T0287 166 :ANLKTI 1eokA 60 :GSFKSY Number of specific fragments extracted= 2 number of extra gaps= 2 total=14218 # 1txoA.163.199 read from T0287.t2k.many.frag # found chain 1txoA in template set T0287 163 :NFYANLKTI 1txoA 203 :LEALQIPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14219 # 1fo8A.163.75 read from T0287.t2k.many.frag # found chain 1fo8A in training set T0287 163 :NFYANLKTI 1fo8A 180 :KFQGYYKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14220 # 1t77A.163.316 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 163 :NFYANLKTI 1t77A 2392 :ELPPWAKTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14221 # 2bw4A.163.190 read from T0287.t2k.many.frag # found chain 2bw4A in template set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bw4A)Y196 T0287 163 :NFYA 2bw4A 191 :GNYK T0287 169 :KTI 2bw4A 197 :ETP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14223 # 1f06A.163.86 read from T0287.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0287)F164 (1f06A)T88 because G (3-10) conformation "forbidden" or filtered. T0287 163 :N 1f06A 87 :D T0287 165 :YANLKTI 1f06A 89 :YDNHRDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14225 # 1xg8A.164.20 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 164 :FYANLKTIE 1xg8A 12 :SCVNAPTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14226 # 1josA.164.63 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 164 :FYANLKTIE 1josA 64 :IEQGMKGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14227 # 1gw5S.164.76 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 164 :FYANLKTIE 1gw5S 77 :NLAYLEAIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14228 # 1e0tA.164.317 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIE 1e0tA 322 :LEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14229 # 1dmgA.164.24 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 164 :FYANLKTIE 1dmgA 26 :IDPNYDVMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=14230 # 1xdnA.164.73 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :FY 1xdnA 121 :FF T0287 167 :NLKTIE 1xdnA 124 :YHILID Number of specific fragments extracted= 2 number of extra gaps= 1 total=14232 # 1uf3A.164.13 read from T0287.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. T0287 164 :F 1uf3A 14 :P T0287 166 :ANLKTIE 1uf3A 16 :GDLEALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14234 # 2c60A.164.79 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 164 :FYA 2c60A 93 :LLK T0287 168 :LKTIE 2c60A 97 :QDDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14236 # 1t77A.164.317 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 164 :FYANLKTIE 1t77A 2393 :LPPWAKTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14237 # 2bgcA.164.207 read from T0287.t2k.many.frag # found chain 2bgcA in template set T0287 164 :FYANLKTIE 2bgcA 207 :YVQNLDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14238 # 1g5aA.164.107 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :FY 1g5aA 108 :FA T0287 167 :NLKTIE 1g5aA 111 :DLKGLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14240 # 1eokA.164.57 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 164 :FYANLKTIE 1eokA 58 :MMGSFKSYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14241 # 2ex0A.164.179 read from T0287.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)I171 (2ex0A)L211 because G (3-10) conformation "forbidden" or filtered. T0287 164 :FYANLKT 2ex0A 204 :YFEKAEF T0287 172 :E 2ex0A 212 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=14243 # 1wo8A.164.105 read from T0287.t2k.many.frag # found chain 1wo8A in template set T0287 164 :FYANLKTIE 1wo8A 106 :LATNLVAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14244 # 1vliA.164.261 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 164 :FYANLKTIE 1vliA 250 :FALNPDELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14245 # 1thtA.164.242 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)N167 (1thtA)N246 because Y (epsilon') conformation "forbidden" or filtered. T0287 164 :FYA 1thtA 243 :LGE T0287 168 :LKTIE 1thtA 247 :LVVLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14247 # 1f06A.164.87 read from T0287.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0287)F164 (1f06A)T88 because G (3-10) conformation "forbidden" or filtered. T0287 165 :YANLKTIE 1f06A 89 :YDNHRDIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=14248 # 1wa5C.164.75 read from T0287.t2k.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)N167 (1wa5C)P79 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYA 1wa5C 76 :HLL T0287 168 :LKTIE 1wa5C 80 :ANNVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14250 # 1rcwA.164.107 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYA 1rcwA 108 :AHE T0287 168 :LKTIE 1rcwA 112 :SEAAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14252 # 2ak3A.164.164 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 164 :FYANLKTIE 2ak3A 164 :PETVVKRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14253 # 2exrA.164.447 read from T0287.t2k.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)A166 (2exrA)A450 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FY 2exrA 448 :PC T0287 167 :NLKTIE 2exrA 451 :KVSSVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14255 # 1t0hB.164.90 read from T0287.t2k.many.frag # found chain 1t0hB in template set T0287 164 :FYANLKTIE 1t0hB 292 :TRSSLAEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14256 # 1xrjA.164.210 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 164 :FYANLKTIE 1xrjA 211 :GADNLVAIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14257 # 1vjuA.164.142 read from T0287.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1vjuA)Y143 T0287 165 :YANLKTIE 1vjuA 144 :YAVEEDCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=14258 # 1uhvA.164.74 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 164 :FYANLKTIE 1uhvA 75 :PFYNFTYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=14259 # 1l3lA.164.144 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 164 :FYANLKTIE 1l3lA 145 :AVAAAATIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14260 # 1f35A.164.113 read from T0287.t2k.many.frag # found chain 1f35A in template set T0287 164 :FYANLKTIE 1f35A 115 :MDWNEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14261 # 2fb5A.164.42 read from T0287.t2k.many.frag # found chain 2fb5A in template set T0287 164 :FYANLKTIE 2fb5A 43 :ILCKMEDIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14262 # 1h5rA.164.185 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 164 :FYAN 1h5rA 186 :MAKN T0287 170 :TIE 1h5rA 192 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14264 # 2al2A.164.213 read from T0287.t2k.many.frag # found chain 2al2A in template set T0287 164 :FYANLKTIE 2al2A 214 :VAPNIQTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14265 # 1xg8A.165.21 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 165 :YANLKTIEQ 1xg8A 13 :CVNAPTSKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14266 # 1josA.165.64 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 165 :YANLKTIEQ 1josA 65 :EQGMKGLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14267 # 1gw5S.165.77 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 165 :YANLKTIEQ 1gw5S 78 :LAYLEAIHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14268 # 1e0tA.165.318 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14269 # 1t77A.165.318 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 165 :YANLKTIEQ 1t77A 2394 :PPWAKTSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14270 # 1eokA.165.58 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 165 :YANLKTIEQ 1eokA 59 :MGSFKSYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14271 # 1uf3A.165.14 read from T0287.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQ 1uf3A 17 :DLEALEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14272 # 1vliA.165.262 read from T0287.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N167 (1vliA)N253 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YA 1vliA 251 :AL T0287 168 :LKTIEQ 1vliA 254 :PDELKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14274 # 2ex0A.165.180 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 165 :YANLKTIEQ 2ex0A 205 :FEKAEFLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14275 # 1dmgA.165.25 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 165 :YANLKTIEQ 1dmgA 27 :DPNYDVMWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14276 # 1g5aA.165.108 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 165 :YANLKTIEQ 1g5aA 109 :AGDLKGLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14277 # 2exrA.165.448 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 165 :YANLKTIEQ 2exrA 449 :CAKVSSVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14278 # 2c60A.165.80 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)A166 (2c60A)K95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 2c60A 94 :L T0287 168 :LKTIEQ 2c60A 97 :QDDLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14280 # 1wa5C.165.76 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 165 :YANLKTIEQ 1wa5C 77 :LLPANNVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14281 # 1xdnA.165.74 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQ 1xdnA 124 :YHILIDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14282 # 2ak3A.165.165 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 165 :YANLKTIEQ 2ak3A 165 :ETVVKRLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14283 # 2bgcA.165.208 read from T0287.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)N167 (2bgcA)N210 because D (zeta) conformation "forbidden" or filtered. T0287 165 :YA 2bgcA 208 :VQ T0287 168 :LKTIEQ 2bgcA 211 :LDYLKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14285 # 1e4fT.165.163 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 165 :YANLKTIEQ 1e4fT 164 :VVPLKVYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14286 # 1wo8A.165.106 read from T0287.t2k.many.frag # found chain 1wo8A in template set T0287 165 :YANLKTIEQ 1wo8A 107 :ATNLVAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14287 # 1f06A.165.88 read from T0287.t2k.many.frag # found chain 1f06A in template set T0287 165 :YANLKTIEQ 1f06A 89 :YDNHRDIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14288 # 1vjuA.165.143 read from T0287.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)A166 (1vjuA)A145 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 1vjuA 144 :Y T0287 167 :NLKTIEQ 1vjuA 146 :VEEDCRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14290 # 1xrjA.165.211 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 165 :YANLKTIEQ 1xrjA 212 :ADNLVAINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14291 # 1auoA.165.77 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 165 :YANLKTIEQ 1auoA 78 :SISLEELEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14292 # 2fb5A.165.43 read from T0287.t2k.many.frag # found chain 2fb5A in template set T0287 165 :YANLKTIEQ 2fb5A 44 :LCKMEDIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14293 # 1rcwA.165.108 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YA 1rcwA 109 :HE T0287 168 :LKTIEQ 1rcwA 112 :SEAAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14295 # 1ryiA.165.281 read from T0287.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1ryiA)D271 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 165 :Y 1ryiA 269 :T T0287 168 :LKTIEQ 1ryiA 272 :LGGLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=14297 # 1wdaA.165.535 read from T0287.t2k.many.frag # found chain 1wdaA in template set T0287 165 :YANLKTIEQ 1wdaA 529 :ILSNKTLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14298 # 2al2A.165.214 read from T0287.t2k.many.frag # found chain 2al2A in template set T0287 165 :YANLKTIEQ 2al2A 215 :APNIQTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14299 # 1i60A.165.254 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 165 :YANLKTIEQ 1i60A 255 :LTAEEAIQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14300 # 1f35A.165.114 read from T0287.t2k.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1f35A 116 :D T0287 167 :NLKTIEQ 1f35A 118 :NEADALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14302 # 1gw5S.166.78 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 166 :ANLKTIEQY 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14303 # 1josA.166.65 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 166 :ANLKTIEQY 1josA 66 :QGMKGLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14304 # 1xg8A.166.22 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 166 :ANLKTIEQY 1xg8A 14 :VNAPTSKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14305 # 1e0tA.166.319 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14306 # 1t77A.166.319 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 166 :ANLKTIEQY 1t77A 2395 :PWAKTSEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14307 # 1eokA.166.59 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N167 (1eokA)S61 because G (3-10) conformation "forbidden" or filtered. T0287 166 :A 1eokA 60 :G T0287 168 :LKTIEQY 1eokA 62 :FKSYKDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14309 # 1rttA.166.57 read from T0287.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0287)A166 (1rttA)G58 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1rttA)F59 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQY 1rttA 60 :PPAVERF Number of specific fragments extracted= 1 number of extra gaps= 1 total=14310 # 1uf3A.166.15 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 166 :ANLKTIEQY 1uf3A 16 :GDLEALEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14311 # 2ak3A.166.166 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 166 :ANLKTIEQY 2ak3A 166 :TVVKRLKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14312 # 1ynbA.166.110 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 166 :ANLKTIEQY 1ynbA 111 :PDFSDVEVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14313 # 1xrjA.166.212 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 166 :ANLKTIEQY 1xrjA 213 :DNLVAINLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14314 # 2ex0A.166.181 read from T0287.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)I171 (2ex0A)L211 because G (3-10) conformation "forbidden" or filtered. T0287 166 :ANLKT 2ex0A 206 :EKAEF T0287 172 :EQY 2ex0A 212 :QPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14316 # 1wa5C.166.77 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 166 :ANLKTIEQY 1wa5C 78 :LPANNVELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14317 # 1auoA.166.78 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 166 :ANLKTIEQY 1auoA 79 :ISLEELEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14318 # 1vjuA.166.144 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 166 :ANLKTIEQY 1vjuA 145 :AVEEDCRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14319 # 1ro7A.166.106 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 166 :ANLKTIEQY 1ro7A 107 :DFFKQLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14320 # 2exrA.166.449 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 166 :ANLKTIEQY 2exrA 450 :AKVSSVEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14321 # 1vliA.166.263 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 166 :ANLKTIEQY 1vliA 252 :LNPDELKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14322 # 1xdnA.166.75 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1xdnA 124 :YHILIDEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=14323 # 2a2mA.166.144 read from T0287.t2k.many.frag # found chain 2a2mA in template set Warning: unaligning (T0287)A166 (2a2mA)I133 because D (zeta) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 2a2mA 134 :PGTDIKDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=14324 # 1g5aA.166.109 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LKTIEQY 1g5aA 112 :LKGLKDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14325 # 1v0wA.166.383 read from T0287.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)S391 T0287 167 :NLKTIEQY 1v0wA 392 :QIKSLSEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14326 # 1e4fT.166.164 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 166 :ANLKTIEQY 1e4fT 165 :VPLKVYEMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14327 # 1i60A.166.255 read from T0287.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)A166 (1i60A)T256 because P (beta_P) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1i60A 257 :AEEAIQTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14328 # 2fb5A.166.44 read from T0287.t2k.many.frag # found chain 2fb5A in template set T0287 166 :ANLKTIEQY 2fb5A 45 :CKMEDIHHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14329 # 1dmgA.166.26 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 166 :ANLKTIEQY 1dmgA 28 :PNYDVMWRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14330 # 1rcwA.166.109 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 166 :A 1rcwA 110 :E T0287 168 :LKTIEQY 1rcwA 112 :SEAAKAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14332 # 2fb0A.166.68 read from T0287.t2k.many.frag # found chain 2fb0A in template set T0287 166 :ANLKTIEQY 2fb0A 66 :EKTAHFAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14333 # 1t8kA.166.59 read from T0287.t2k.many.frag # found chain 1t8kA in training set T0287 166 :ANLKTIEQY 1t8kA 60 :EKITTVQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14334 # 1wwpA.166.97 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 166 :ANLKTIEQY 1wwpA 98 :AIFRRLPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14335 # 1josA.167.66 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 167 :NLKTIEQYN 1josA 67 :GMKGLEKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14336 # 1gw5S.167.79 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 167 :NLKTIEQYN 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14337 # 1xg8A.167.23 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 167 :NLKTIEQYN 1xg8A 15 :NAPTSKDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14338 # 1t77A.167.320 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 167 :NLKTIEQYN 1t77A 2396 :WAKTSEEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14339 # 1vjuA.167.145 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 167 :NLKTIEQYN 1vjuA 146 :VEEDCRDFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14340 # 1rttA.167.58 read from T0287.t2k.many.frag # found chain 1rttA in training set T0287 167 :NLKTIEQYN 1rttA 59 :FPPAVERFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14341 # 1ifqA.167.36 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 167 :NLKTIEQYN 1ifqA 26 :SGRDLQQYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14342 # 1auoA.167.79 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 167 :NLKTIEQYN 1auoA 80 :SLEELEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14343 # 1e0tA.167.320 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14344 # 2ak3A.167.167 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 167 :NLKTIEQYN 2ak3A 167 :VVKRLKAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14345 # 1uf3A.167.16 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 167 :NLKTIEQYN 1uf3A 17 :DLEALEKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14346 # 2exrA.167.450 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 167 :NLKTIEQYN 2exrA 451 :KVSSVEKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14347 # 1wa5C.167.78 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 167 :NLKTIEQYN 1wa5C 79 :PANNVELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14348 # 1eokA.167.60 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 167 :NLKTIEQYN 1eokA 61 :SFKSYKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14349 # 1vliA.167.264 read from T0287.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N167 (1vliA)N253 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 1vliA 254 :PDELKEMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=14350 # 1ynbA.167.111 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 167 :NLKTIEQYN 1ynbA 112 :DFSDVEVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14351 # 1xrjA.167.213 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 167 :NLKTIEQYN 1xrjA 214 :NLVAINLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14352 # 2a2mA.167.145 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 167 :NLKTIEQYN 2a2mA 134 :PGTDIKDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14353 # 1e4fT.167.165 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 167 :NLKTIEQYN 1e4fT 166 :PLKVYEMFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14354 # 1xdnA.167.76 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 167 :NLKTIEQYN 1xdnA 124 :YHILIDEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14355 # 1i60A.167.256 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 167 :NLKTIEQYN 1i60A 257 :AEEAIQTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14356 # 1tr9A.167.310 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 167 :NLKTIEQYN 1tr9A 310 :RLERWQQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14357 # 1ryiA.167.283 read from T0287.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 168 :LKTIEQYN 1ryiA 272 :LGGLESVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=14358 # 1wwpA.167.98 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 167 :NLKTIEQYN 1wwpA 99 :IFRRLPDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14359 # 2cxaA.167.216 read from T0287.t2k.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)N167 (2cxaA)C200 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2cxaA 201 :EIPRRDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14360 # 1ro7A.167.107 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 167 :NLKTIEQYN 1ro7A 108 :FFKQLKDFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14361 # 1itxA.167.143 read from T0287.t2k.many.frag # found chain 1itxA in training set Warning: unaligning (T0287)N167 (1itxA)T176 because E (beta_S) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 1itxA 177 :AATREVFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14362 # 7a3hA.167.240 read from T0287.t2k.many.frag # found chain 7a3hA in training set T0287 167 :NLKTIEQYN 7a3hA 241 :FLDEAQVWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14363 # 1wzdA.167.164 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 167 :NLKTIEQYN 1wzdA 165 :GIAKLKVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14364 # 2fb5A.167.45 read from T0287.t2k.many.frag # found chain 2fb5A in template set T0287 167 :NLKTIEQYN 2fb5A 46 :KMEDIHHML Number of specific fragments extracted= 1 number of extra gaps= 0 total=14365 # 1ifqA.168.37 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 168 :LKTIEQYND 1ifqA 27 :GRDLQQYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14366 # 1josA.168.67 read from T0287.t2k.many.frag # found chain 1josA in training set Warning: unaligning (T0287)Y174 (1josA)A74 because G (3-10) conformation "forbidden" or filtered. T0287 168 :LKTIEQ 1josA 68 :MKGLEK T0287 175 :ND 1josA 75 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14368 # 1ro7A.168.108 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 168 :LKTIEQYND 1ro7A 109 :FKQLKDFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14369 # 1xg8A.168.24 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 168 :LKTIEQYND 1xg8A 16 :APTSKDIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14370 # 1gw5S.168.80 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 168 :LKTIEQYND 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14371 # 1vjuA.168.146 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 168 :LKTIEQYND 1vjuA 147 :EEDCRDFHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14372 # 1vliA.168.265 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 168 :LKTIEQYND 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14373 # 2a2mA.168.146 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 168 :LKTIEQYND 2a2mA 135 :GTDIKDYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14374 # 1wwpA.168.99 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 168 :LKTIEQYND 1wwpA 100 :FRRLPDYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14375 # 1rttA.168.59 read from T0287.t2k.many.frag # found chain 1rttA in training set T0287 168 :LKTIEQYND 1rttA 60 :PPAVERFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14376 # 1auoA.168.80 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 168 :LKTIEQYND 1auoA 81 :LEELEVSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14377 # 1t77A.168.321 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 168 :LKTIEQYND 1t77A 2397 :AKTSEEFVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14378 # 1ynbA.168.112 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 168 :LKTIEQYND 1ynbA 113 :FSDVEVYVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14379 # 2exrA.168.451 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 168 :LKTIEQYND 2exrA 452 :VSSVEKMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14380 # 1tr9A.168.311 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 168 :LKTIEQYND 1tr9A 311 :LERWQQASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14381 # 1uf3A.168.17 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 168 :LKTIEQYND 1uf3A 18 :LEALEKFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14382 # 1xdnA.168.77 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 168 :LKTIEQYND 1xdnA 125 :HILIDEFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14383 # 1f5qB.168.225 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 168 :LKTIEQYND 1f5qB 226 :KEELHQCCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14384 # 1e0tA.168.321 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI T0287 176 :D 1e0tA 330 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=14386 # 1eokA.168.61 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 168 :LKTIEQYND 1eokA 62 :FKSYKDLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14387 # 2cxaA.168.217 read from T0287.t2k.many.frag # found chain 2cxaA in template set T0287 168 :LKTIEQYND 2cxaA 201 :EIPRRDYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14388 # 2ak3A.168.168 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 168 :LKTIEQYND 2ak3A 168 :VKRLKAYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14389 # 1xrjA.168.214 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 168 :LKTIEQYND 1xrjA 215 :LVAINLIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14390 # 1wa5C.168.79 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 168 :LKTIEQYND 1wa5C 80 :ANNVELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14391 # 1wzdA.168.165 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 168 :LKTIEQYND 1wzdA 166 :IAKLKVYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14392 # 2fb0A.168.70 read from T0287.t2k.many.frag # found chain 2fb0A in template set T0287 168 :LKTIEQYND 2fb0A 68 :TAHFAQYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14393 # 1e4fT.168.166 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 168 :LKTIEQYND 1e4fT 167 :LKVYEMFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14394 # 1i60A.168.257 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 168 :LKTIEQYND 1i60A 258 :EEAIQTAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14395 # 1xqwA.168.274 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 168 :LKTIEQYND 1xqwA 275 :WEDREGYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14396 # 2bgcA.168.211 read from T0287.t2k.many.frag # found chain 2bgcA in template set T0287 168 :LKTIEQYND 2bgcA 211 :LDYLKRYAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14397 # 1ifqA.169.38 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 169 :KTIEQYNDY 1ifqA 28 :RDLQQYQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14398 # 1ro7A.169.109 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 169 :KTIEQYNDY 1ro7A 110 :KQLKDFNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14399 # 1vjuA.169.147 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 169 :KTIEQYNDY 1vjuA 148 :EDCRDFHQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14400 # 1josA.169.68 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 169 :KTIEQYNDY 1josA 69 :KGLEKASPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14401 # 2a2mA.169.147 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 169 :KTIEQYNDY 2a2mA 136 :TDIKDYADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14402 # 1xdnA.169.78 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 169 :KTIEQYNDY 1xdnA 126 :ILIDEFTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14403 # 1wwpA.169.100 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 169 :KTIEQYNDY 1wwpA 101 :RRLPDYARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14404 # 1auoA.169.81 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 169 :KTIEQYNDY 1auoA 82 :EELEVSAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14405 # 1vliA.169.266 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 169 :KTIEQYNDY 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14406 # 1f5qB.169.226 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 169 :KTIEQYNDY 1f5qB 227 :EELHQCCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14407 # 1xqwA.169.275 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 169 :KTIEQYNDY 1xqwA 276 :EDREGYNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14408 # 1xg8A.169.25 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 170 :TIEQYNDY 1xg8A 18 :TSKDIYDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=14409 # 1rttA.169.60 read from T0287.t2k.many.frag # found chain 1rttA in training set T0287 169 :KTIEQYNDY 1rttA 61 :PAVERFREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14410 # 1gw5S.169.81 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 169 :KTIEQYNDY 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14411 # 1qwtA.169.230 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 169 :KTIEQYNDY 1qwtA 403 :LTSDQYKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14412 # 1tr9A.169.312 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 169 :KTIEQYNDY 1tr9A 312 :ERWQQASAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14413 # 1t77A.169.322 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 169 :KTIEQYNDY 1t77A 2398 :KTSEEFVHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14414 # 1uf3A.169.18 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 169 :KTIEQYNDY 1uf3A 19 :EALEKFVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14415 # 1wzdA.169.166 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 169 :KTIEQYNDY 1wzdA 167 :AKLKVYKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14416 # 2f1rA.169.146 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 169 :KTIEQYNDY 2f1rA 147 :DEVERIAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14417 # 1ynbA.169.113 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 169 :KTIEQYNDY 1ynbA 114 :SDVEVYVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14418 # 2exrA.169.452 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 169 :KTIEQYNDY 2exrA 453 :SSVEKMVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14419 # 1xrjA.169.215 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 169 :KTIEQYNDY 1xrjA 216 :VAINLIVQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14420 # 1lvaA.169.198 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 169 :KTIEQYNDY 1lvaA 575 :QALGEAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14421 # 1e4fT.169.167 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 169 :KTIEQYNDY 1e4fT 168 :KVYEMFYNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14422 # 1wduA.169.127 read from T0287.t2k.many.frag # found chain 1wduA in template set T0287 169 :KTIEQYNDY 1wduA 131 :KPIESYLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14423 # 1eokA.169.62 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 169 :KTIEQYNDY 1eokA 63 :KSYKDLDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14424 # 1qnrA.169.138 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 169 :KTIEQYNDY 1qnrA 139 :AAQTQYRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14425 # 1z7aA.169.226 read from T0287.t2k.many.frag # found chain 1z7aA in template set T0287 169 :KTIEQYNDY 1z7aA 227 :NNGEQFFQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14426 # 2cxaA.169.218 read from T0287.t2k.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)K169 (2cxaA)I202 because E (beta_S) conformation "forbidden" or filtered. T0287 170 :TIEQYNDY 2cxaA 203 :PRRDYLNY Number of specific fragments extracted= 1 number of extra gaps= 1 total=14427 # 1ifqA.170.39 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 170 :TIEQYNDYV 1ifqA 29 :DLQQYQSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14428 # 1f5qB.170.227 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 170 :TIEQYNDYV 1f5qB 228 :ELHQCCDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14429 # 1vjuA.170.148 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 170 :TIEQYNDYV 1vjuA 149 :DCRDFHQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14430 # 1ro7A.170.110 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 170 :TIEQYNDYV 1ro7A 111 :QLKDFNAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14431 # 2a2mA.170.148 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 170 :TIEQYNDYV 2a2mA 137 :DIKDYADYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14432 # 1xqwA.170.276 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 170 :TIEQYNDYV 1xqwA 277 :DREGYNKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14433 # 1wwpA.170.101 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 170 :TIEQYNDYV 1wwpA 102 :RLPDYARLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14434 # 1josA.170.69 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 170 :TIEQYNDYV 1josA 70 :GLEKASPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14435 # 1qwtA.170.231 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 170 :TIEQYNDYV 1qwtA 404 :TSDQYKAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14436 # 1xdnA.170.79 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 170 :TIEQYNDYV 1xdnA 127 :LIDEFTAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14437 # 1auoA.170.82 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 170 :TIEQYNDYV 1auoA 83 :ELEVSAKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14438 # 1vliA.170.267 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 170 :TIEQYNDYV 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14439 # 1wzdA.170.167 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 170 :TIEQYNDYV 1wzdA 168 :KLKVYKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14440 # 1wduA.170.128 read from T0287.t2k.many.frag # found chain 1wduA in template set T0287 170 :TIEQYNDYV 1wduA 132 :PIESYLEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14441 # 1xg8A.170.26 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 170 :TIEQYNDYV 1xg8A 18 :TSKDIYDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14442 # 1tr9A.170.313 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 170 :TIEQYNDYV 1tr9A 313 :RWQQASANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14443 # 1qnrA.170.139 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 170 :TIEQYNDYV 1qnrA 140 :AQTQYRKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14444 # 1lvaA.170.199 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 170 :TIEQYNDYV 1lvaA 576 :ALGEAREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14445 # 1wdaA.170.540 read from T0287.t2k.many.frag # found chain 1wdaA in template set T0287 170 :TIEQYNDYV 1wdaA 534 :TLREHNSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14446 # 1rttA.170.61 read from T0287.t2k.many.frag # found chain 1rttA in training set T0287 170 :TIEQYNDYV 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14447 # 1jl1A.170.128 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 170 :TIEQYNDYV 1jl1A 129 :ENERADELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14448 # 1ynbA.170.114 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 170 :TIEQYNDYV 1ynbA 115 :DVEVYVSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14449 # 1wouA.170.44 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 170 :TIEQYNDYV 1wouA 45 :DCVQAEPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14450 # 2f1rA.170.147 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 170 :TIEQYNDYV 2f1rA 148 :EVERIAEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14451 # 1ntyA.170.294 read from T0287.t2k.many.frag # found chain 1ntyA in training set T0287 170 :TIEQYNDYV 1ntyA 1519 :NKQDWIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14452 # 1tqhA.170.229 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 170 :TIEQYNDYV 1tqhA 230 :EKDQLHEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14453 # 1nznA.170.88 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 170 :TIEQYNDYV 1nznA 89 :EYEKALKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14454 # 1oltA.170.80 read from T0287.t2k.many.frag # found chain 1oltA in template set T0287 170 :TIEQYNDYV 1oltA 81 :KADQYLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14455 # 1xrjA.170.216 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 170 :TIEQYNDYV 1xrjA 217 :AINLIVQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14456 # 2cxaA.170.219 read from T0287.t2k.many.frag # found chain 2cxaA in template set T0287 170 :TIEQYNDYV 2cxaA 203 :PRRDYLNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14457 # 1f5qB.171.228 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 171 :IEQYNDYVR 1f5qB 229 :LHQCCDLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14458 # 1ifqA.171.40 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 171 :IEQYNDYVR 1ifqA 30 :LQQYQSQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14459 # 1vjuA.171.149 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 171 :IEQYNDYVR 1vjuA 150 :CRDFHQVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14460 # 2a2mA.171.149 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 171 :IEQYNDYVR 2a2mA 138 :IKDYADYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14461 # 1ro7A.171.111 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 171 :IEQYNDYVR 1ro7A 112 :LKDFNAYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14462 # 1xqwA.171.277 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 171 :IEQYNDYVR 1xqwA 278 :REGYNKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14463 # 1wwpA.171.102 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 171 :IEQYNDYVR 1wwpA 103 :LPDYARLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=14464 # 1qwtA.171.232 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 171 :IEQYNDYVR 1qwtA 405 :SDQYKAYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14465 # 1auoA.171.83 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 171 :IEQYNDYVR 1auoA 84 :LEVSAKMVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14466 # 1wzdA.171.168 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 171 :IEQYNDYVR 1wzdA 169 :LKVYKDEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14467 # 1xdnA.171.80 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 171 :IEQYNDYVR 1xdnA 128 :IDEFTAQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14468 # 1josA.171.70 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 171 :IEQYNDYVR 1josA 71 :LEKASPYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14469 # 1lvaA.171.200 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 171 :IEQYNDYVR 1lvaA 577 :LGEAREVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14470 # 1jl1A.171.129 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 171 :IEQYNDYVR 1jl1A 130 :NERADELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14471 # 1vliA.171.268 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 171 :IEQYNDYVR 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14472 # 1b3tA.171.111 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 171 :IEQYNDYVR 1b3tA 572 :AEVLKDAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14473 # 1wduA.171.129 read from T0287.t2k.many.frag # found chain 1wduA in template set T0287 171 :IEQYNDYVR 1wduA 133 :IESYLEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14474 # 1nznA.171.89 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 171 :IEQYNDYVR 1nznA 90 :YEKALKYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14475 # 1xodA.171.100 read from T0287.t2k.many.frag # found chain 1xodA in training set T0287 171 :IEQYNDYVR 1xodA 106 :ARAFDRGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14476 # 2f1rA.171.148 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 171 :IEQYNDYVR 2f1rA 149 :VERIAEFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14477 # 1ntyA.171.295 read from T0287.t2k.many.frag # found chain 1ntyA in training set T0287 171 :IEQYNDYVR 1ntyA 1520 :KQDWIKHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14478 # 2b61A.171.362 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 171 :IEQYNDYVR 2b61A 344 :YDQFEKRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14479 # 1xrjA.171.217 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 171 :IEQYNDYVR 1xrjA 218 :INLIVQHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14480 # 1qnrA.171.140 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 171 :IEQYNDYVR 1qnrA 141 :QTQYRKYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14481 # 1oltA.171.81 read from T0287.t2k.many.frag # found chain 1oltA in template set T0287 171 :IEQYNDYVR 1oltA 82 :ADQYLDALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14482 # 1wouA.171.45 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 171 :IEQYNDYVR 1wouA 46 :CVQAEPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14483 # 1ynbA.171.115 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 171 :IEQYNDYVR 1ynbA 116 :VEVYVSDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14484 # 1tqhA.171.230 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 171 :IEQYNDYVR 1tqhA 231 :KDQLHEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14485 # 1w9cA.171.301 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 171 :IEQYNDYVR 1w9cA 1008 :IPAFKEHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14486 # 1l5oA.171.209 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 171 :IEQYNDYVR 1l5oA 210 :IDNKVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14487 # 1f5qB.172.229 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 172 :EQYNDYVRD 1f5qB 230 :HQCCDLVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14488 # 1ifqA.172.41 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 172 :EQYNDYVRD 1ifqA 31 :QQYQSQAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14489 # 1xqwA.172.278 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 172 :EQYNDYVRD 1xqwA 279 :EGYNKLLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14490 # 2a2mA.172.150 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 172 :EQYNDYVRD 2a2mA 139 :KDYADYEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14491 # 1vjuA.172.150 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 172 :EQYNDYVRD 1vjuA 151 :RDFHQVAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14492 # 1qwtA.172.233 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 172 :EQYNDYVRD 1qwtA 406 :DQYKAYLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14493 # 1wzdA.172.169 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 172 :EQYNDYVRD 1wzdA 170 :KVYKDEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14494 # 1jl1A.172.130 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 172 :EQYNDYVRD 1jl1A 131 :ERADELARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14495 # 1auoA.172.84 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 172 :EQYNDYVRD 1auoA 85 :EVSAKMVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14496 # 1b3tA.172.112 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 172 :EQYNDYVRD 1b3tA 573 :EVLKDAIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14497 # 1nznA.172.90 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 172 :EQYNDYVRD 1nznA 91 :EKALKYVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14498 # 1ro7A.172.112 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 172 :EQYNDYVRD 1ro7A 113 :KDFNAYFKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14499 # 1wwpA.172.103 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 172 :EQYNDYVRD 1wwpA 104 :PDYARLMEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14500 # 1lvaA.172.201 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 172 :EQYNDYVRD 1lvaA 578 :GEAREVIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14501 # 1uddA.172.110 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 172 :EQYNDYVRD 1uddA 111 :SAYMDFMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14502 # 1xdnA.172.81 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 172 :EQYNDYVRD 1xdnA 129 :DEFTAQIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14503 # 1l5oA.172.210 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 172 :EQYNDYVRD 1l5oA 211 :DNKVDVVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14504 # 2f1rA.172.149 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 172 :EQYNDYVRD 2f1rA 150 :ERIAEFILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14505 # 1josA.172.71 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 172 :EQYNDYVRD 1josA 72 :EKASPYIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14506 # 1z77A.172.125 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 172 :EQYNDYVRD 1z77A 126 :RVFFDFVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14507 # 1w9cA.172.302 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 172 :EQYNDYVRD 1w9cA 1009 :PAFKEHLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14508 # 2b61A.172.363 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 172 :EQYNDYVRD 2b61A 345 :DQFEKRIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14509 # 1o6dA.172.80 read from T0287.t2k.many.frag # found chain 1o6dA in training set T0287 172 :EQYNDYVRD 1o6dA 79 :EEFADFLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14510 # 1xodA.172.101 read from T0287.t2k.many.frag # found chain 1xodA in training set T0287 172 :EQYNDYVRD 1xodA 107 :RAFDRGIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14511 # 1wdaA.172.542 read from T0287.t2k.many.frag # found chain 1wdaA in template set T0287 172 :EQYNDYVRD 1wdaA 536 :REHNSFVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=14512 # 2gmfA.172.103 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 172 :EQYNDYVRD 2gmfA 104 :ESFKENLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14513 # 1qnrA.172.141 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 172 :EQYNDYVRD 1qnrA 142 :TQYRKYVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14514 # 1vliA.172.269 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 172 :EQYNDYVRD 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14515 # 1tqhA.172.231 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 172 :EQYNDYVRD 1tqhA 232 :DQLHEDIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14516 # 1wouA.172.46 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 172 :EQYNDYVRD 1wouA 47 :VQAEPVVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14517 # 1f5qB.173.230 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 173 :QYNDYVRDL 1f5qB 231 :QCCDLVDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14518 # 1ifqA.173.42 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 173 :QYNDYVRDL 1ifqA 32 :QYQSQAKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14519 # 1qwtA.173.234 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 173 :QYNDYVRDL 1qwtA 407 :QYKAYLQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14520 # 1xqwA.173.279 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 173 :QYNDYVRDL 1xqwA 280 :GYNKLLSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14521 # 1b3tA.173.113 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 173 :QYNDYVRDL 1b3tA 574 :VLKDAIKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14522 # 1vjuA.173.151 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 173 :QYNDYVRDL 1vjuA 152 :DFHQVAQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14523 # 1jl1A.173.131 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 173 :QYNDYVRDL 1jl1A 132 :RADELARAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14524 # 1auoA.173.85 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 173 :QYNDYVRDL 1auoA 86 :VSAKMVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14525 # 2a2mA.173.151 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 173 :QYNDYVRDL 2a2mA 140 :DYADYEAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14526 # 1wzdA.173.170 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 173 :QYNDYVRDL 1wzdA 171 :VYKDEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14527 # 1lvaA.173.202 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 173 :QYNDYVRDL 1lvaA 579 :EAREVIKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14528 # 1z77A.173.126 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 173 :QYNDYVRDL 1z77A 127 :VFFDFVREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14529 # 2b61A.173.364 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 173 :QYNDYVRDL 2b61A 346 :QFEKRIRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14530 # 1nznA.173.91 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 173 :QYNDYVRDL 1nznA 92 :KALKYVRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14531 # 2gmfA.173.104 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 173 :QYNDYVRDL 2gmfA 105 :SFKENLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14532 # 2f1rA.173.150 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 173 :QYNDYVRDL 2f1rA 151 :RIAEFILSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14533 # 1wwpA.173.104 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 173 :QYNDYVRDL 1wwpA 105 :DYARLMEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14534 # 1ro7A.173.113 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 173 :QYNDYVRDL 1ro7A 114 :DFNAYFKFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14535 # 1l5oA.173.211 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 173 :QYNDYVRDL 1l5oA 212 :NKVDVVRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14536 # 1w9cA.173.303 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 173 :QYNDYVRDL 1w9cA 1010 :AFKEHLRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14537 # 1xdnA.173.82 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 173 :QYNDYVRDL 1xdnA 130 :EFTAQIRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14538 # 1wouA.173.47 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 173 :QYNDYVRDL 1wouA 48 :QAEPVVREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14539 # 1xodA.173.102 read from T0287.t2k.many.frag # found chain 1xodA in training set T0287 173 :QYNDYVRDL 1xodA 108 :AFDRGIRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14540 # 1izmA.173.155 read from T0287.t2k.many.frag # found chain 1izmA in template set T0287 173 :QYNDYVRDL 1izmA 154 :EIIEYVRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14541 # 2d0tA.173.304 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 173 :QYNDY 2d0tA 302 :AHRNF T0287 180 :DL 2d0tA 309 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14543 # 1josA.173.72 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 173 :QYNDYVRDL 1josA 73 :KASPYIRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14544 # 1tqhA.173.232 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 173 :QYNDYVRDL 1tqhA 233 :QLHEDIYAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14545 # 1xrjA.173.219 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 173 :QYNDYVRDL 1xrjA 220 :LIVQHIQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14546 # 1jl0A.173.262 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 173 :QYNDYVRDL 1jl0A 263 :SYDDLIRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14547 # 1vliA.173.270 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 173 :QYNDYVRDL 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14548 # 1f5qB.174.231 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 174 :YNDYVRDLL 1f5qB 232 :CCDLVDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14549 # 1ifqA.174.43 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 174 :YNDYVRDLL 1ifqA 33 :YQSQAKQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14550 # 1qwtA.174.235 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 174 :YNDYVRDLL 1qwtA 408 :YKAYLQDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14551 # 1b3tA.174.114 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 174 :YNDYVRDLL 1b3tA 575 :LKDAIKDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14552 # 1jl1A.174.132 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 174 :YNDYVRDLL 1jl1A 133 :ADELARAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14553 # 1z77A.174.127 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 174 :YNDYVRDLL 1z77A 128 :FFDFVREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14554 # 1xqwA.174.280 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 174 :YNDYVRDLL 1xqwA 281 :YNKLLSDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14555 # 1nznA.174.92 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 174 :YNDYVRDLL 1nznA 93 :ALKYVRGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14556 # 1vjuA.174.152 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 174 :YNDYVRDLL 1vjuA 153 :FHQVAQDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=14557 # 2b61A.174.365 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 174 :YNDYVRDLL 2b61A 347 :FEKRIRDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14558 # 2gmfA.174.105 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 174 :YNDYVRDLL 2gmfA 106 :FKENLKDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14559 # 1wzdA.174.171 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 174 :YNDYVRDLL 1wzdA 172 :YKDEYREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14560 # 1lvaA.174.203 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 174 :YNDYVRDLL 1lvaA 580 :AREVIKNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14561 # 1auoA.174.86 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 174 :YNDYVRDLL 1auoA 87 :SAKMVTDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14562 # 2f1rA.174.151 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 174 :YNDYVRDLL 2f1rA 152 :IAEFILSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14563 # 1l5oA.174.212 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 174 :YNDYVRDLL 1l5oA 213 :KVDVVRRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14564 # 1w9cA.174.304 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 174 :YNDYVRDLL 1w9cA 1011 :FKEHLRDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14565 # 1wouA.174.48 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 174 :YNDYVRDLL 1wouA 49 :AEPVVREGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14566 # 1l5aA.174.297 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 174 :YNDYVRDLL 1l5aA 298 :SGQAIRSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14567 # 2a2mA.174.152 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 174 :YNDYVRDLL 2a2mA 141 :YADYEAYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14568 # 1uddA.174.112 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 174 :YNDYVRDLL 1uddA 113 :YMDFMLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14569 # 1qw9A.174.263 read from T0287.t2k.many.frag # found chain 1qw9A in training set T0287 174 :YNDYVRDLL 1qw9A 264 :MDDFIRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14570 # 2d0tA.174.305 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 174 :YNDY 2d0tA 303 :HRNF T0287 180 :DLL 2d0tA 309 :SLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14572 # 1xdnA.174.83 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 174 :YNDYVRDLL 1xdnA 131 :FTAQIRILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14573 # 1o6dA.174.82 read from T0287.t2k.many.frag # found chain 1o6dA in training set T0287 174 :YNDYVRDLL 1o6dA 81 :FADFLKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14574 # 1izmA.174.156 read from T0287.t2k.many.frag # found chain 1izmA in template set T0287 174 :YNDYVRDLL 1izmA 155 :IIEYVRTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14575 # 1uh4A.174.444 read from T0287.t2k.many.frag # found chain 1uh4A in template set T0287 174 :YNDYVRDLL 1uh4A 445 :FDSWLRGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14576 # 1ro7A.174.114 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 174 :YNDYVRDLL 1ro7A 115 :FNAYFKFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14577 # 1x38A.174.11 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 174 :YNDYVRDLL 1x38A 12 :VEDRVADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14578 # 1jl0A.174.263 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 174 :YNDYVRDLL 1jl0A 264 :YDDLIRKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14579 # 1f5qB.175.232 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 175 :NDYVRDLLM 1f5qB 233 :CDLVDIAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14580 # 1ifqA.175.44 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 175 :NDYVRDLLM 1ifqA 34 :QSQAKQLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14581 # 1b3tA.175.115 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 175 :NDYVRDLLM 1b3tA 576 :KDAIKDLVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14582 # 1xqwA.175.281 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 175 :NDYVRDLLM 1xqwA 282 :NKLLSDFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14583 # 2gmfA.175.106 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 175 :NDYVRDLLM 2gmfA 107 :KENLKDFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14584 # 1qwtA.175.236 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 175 :NDYVRDLLM 1qwtA 409 :KAYLQDLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14585 # 1z77A.175.128 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 175 :NDYVRDLLM 1z77A 129 :FDFVREKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14586 # 1jl1A.175.133 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 175 :NDYVRDLLM 1jl1A 134 :DELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14587 # 1vjuA.175.153 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 175 :NDYVRDLLM 1vjuA 154 :HQVAQDLCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14588 # 1nznA.175.93 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 175 :NDYVRDLLM 1nznA 94 :LKYVRGLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14589 # 1wzdA.175.172 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 175 :NDYVRDLLM 1wzdA 173 :KDEYREKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14590 # 2b61A.175.366 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 175 :NDYVRDLLM 2b61A 348 :EKRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14591 # 1lvaA.175.204 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 175 :NDYVRDLLM 1lvaA 581 :REVIKNLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14592 # 1wouA.175.49 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 175 :NDYVRDLLM 1wouA 50 :EPVVREGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14593 # 1x38A.175.12 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 175 :NDYVRDLLM 1x38A 13 :EDRVADLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14594 # 1auoA.175.87 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 175 :NDYVRDLLM 1auoA 88 :AKMVTDLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14595 # 1w9cA.175.305 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 175 :NDYVRDLLM 1w9cA 1012 :KEHLRDFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14596 # 1l5aA.175.298 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 175 :NDYVRDLLM 1l5aA 299 :GQAIRSLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14597 # 1l5oA.175.213 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 175 :NDYVRDLLM 1l5oA 214 :VDVVRRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14598 # 2f1rA.175.152 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 175 :NDYVRDLLM 2f1rA 153 :AEFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14599 # 1izmA.175.157 read from T0287.t2k.many.frag # found chain 1izmA in template set T0287 175 :NDYVRDLLM 1izmA 156 :IEYVRTIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14600 # 1xrjA.175.221 read from T0287.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0287)M183 because last residue in template chain is (1xrjA)N230 T0287 175 :NDYVRDLL 1xrjA 222 :VQHIQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14601 # 1tqhA.175.234 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 175 :NDYVRDLLM 1tqhA 235 :HEDIYAFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14602 # 2d0tA.175.306 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 175 :NDY 2d0tA 304 :RNF T0287 180 :DLLM 2d0tA 309 :SLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=14604 # 1tr9A.175.318 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 175 :NDYVRDLLM 1tr9A 318 :SANMQRLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14605 # 1i60A.175.264 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 175 :NDYVRDLLM 1i60A 265 :KKTTVDVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14606 # 1uddA.175.113 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 175 :NDYVRDLLM 1uddA 114 :MDFMLATAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14607 # 1o6dA.175.83 read from T0287.t2k.many.frag # found chain 1o6dA in training set T0287 175 :NDYVRDLLM 1o6dA 82 :ADFLKDLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14608 # 1llfA.175.358 read from T0287.t2k.many.frag # found chain 1llfA in training set T0287 175 :NDYVRDLLM 1llfA 359 :RAYFKQSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14609 # 1qw9A.175.264 read from T0287.t2k.many.frag # found chain 1qw9A in training set T0287 175 :NDYVRDLLM 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14610 # 1ifqA.176.45 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 176 :DYVRDLLMK 1ifqA 35 :SQAKQLFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14611 # 1f5qB.176.233 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 176 :DYVRDLLMK 1f5qB 234 :DLVDIAIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14612 # 1b3tA.176.116 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 176 :DYVRDLLMK 1b3tA 577 :DAIKDLVMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14613 # 2gmfA.176.107 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 176 :DYVRDLLMK 2gmfA 108 :ENLKDFLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14614 # 1x38A.176.13 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 176 :DYVRDLLMK 1x38A 14 :DRVADLLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14615 # 1nznA.176.94 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 176 :DYVRDLLMK 1nznA 95 :KYVRGLLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14616 # 1wzdA.176.173 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 176 :DYVRDLLMK 1wzdA 174 :DEYREKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14617 # 1xqwA.176.282 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 176 :DYVRDLLMK 1xqwA 283 :KLLSDFILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14618 # 1qwtA.176.237 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 176 :DYVRDLLMK 1qwtA 410 :AYLQDLVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14619 # 1jl1A.176.134 read from T0287.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0287)K184 (1jl1A)N143 because D (zeta) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 1jl1A 135 :ELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=14620 # 1z77A.176.129 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 176 :DYVRDLLMK 1z77A 130 :DFVREKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14621 # 1vjuA.176.154 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 176 :DYVRDLLMK 1vjuA 155 :QVAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14622 # 2b61A.176.367 read from T0287.t2k.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 2b61A 349 :KRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14623 # 1lvaA.176.205 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 176 :DYVRDLLMK 1lvaA 582 :EVIKNLAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=14624 # 1wouA.176.50 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 176 :DYVRDLLMK 1wouA 51 :PVVREGLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14625 # 1tr9A.176.319 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 176 :DYVRDLLMK 1tr9A 319 :ANMQRLIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14626 # 1l5aA.176.299 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 176 :DYVRDLLMK 1l5aA 300 :QAIRSLYLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14627 # 1o6dA.176.84 read from T0287.t2k.many.frag # found chain 1o6dA in training set T0287 176 :DYVRDLLMK 1o6dA 83 :DFLKDLEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14628 # 2d0tA.176.307 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 176 :DY 2d0tA 305 :NF T0287 180 :DLLMK 2d0tA 309 :SLESN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14630 # 1w9cA.176.306 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 176 :DYVRDLLMK 1w9cA 1013 :EHLRDFLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14631 # 1uddA.176.114 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 176 :DYVRDLLMK 1uddA 115 :DFMLATAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14632 # 1tqhA.176.235 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 176 :DYVRDLLMK 1tqhA 236 :EDIYAFLES Number of specific fragments extracted= 1 number of extra gaps= 0 total=14633 # 1i60A.176.265 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 176 :DYVRDLLMK 1i60A 266 :KTTVDVVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14634 # 1auoA.176.88 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 176 :DYVRDLLMK 1auoA 89 :KMVTDLIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14635 # 1l5oA.176.214 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 176 :DYVRDLLMK 1l5oA 215 :DVVRRAIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14636 # 2f1rA.176.153 read from T0287.t2k.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 176 :DYVRDLLM 2f1rA 154 :EFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14637 # 1llfA.176.359 read from T0287.t2k.many.frag # found chain 1llfA in training set T0287 176 :DYVRDLLMK 1llfA 360 :AYFKQSFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14638 # 2arhA.176.171 read from T0287.t2k.many.frag # found chain 2arhA in template set T0287 176 :DYVRDLLMK 2arhA 170 :KEFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14639 # 1ursA.176.216 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 176 :DYVRDLLMK 1ursA 217 :TLMRDMVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14640 # 1yjsA.176.377 read from T0287.t2k.many.frag # found chain 1yjsA in template set T0287 176 :DYVRDLLMK 1yjsA 378 :AIIGLVLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14641 # 1ifqA.177.46 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 177 :YVRDLLMKF 1ifqA 36 :QAKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14642 # 1f5qB.177.234 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 177 :YVRDLLMKF 1f5qB 235 :LVDIAIVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14643 # 1b3tA.177.117 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 177 :YVRDLLMKF 1b3tA 578 :AIKDLVMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14644 # 1wzdA.177.174 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 177 :YVRDLLMKF 1wzdA 175 :EYREKLNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14645 # 2gmfA.177.108 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 177 :YVRDLLMKF 2gmfA 109 :NLKDFLLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14646 # 1xqwA.177.283 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 177 :YVRDLLMKF 1xqwA 284 :LLSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14647 # 1x38A.177.14 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 177 :YVRDLLMKF 1x38A 15 :RVADLLGRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14648 # 1qwtA.177.238 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 177 :YVRDLLMKF 1qwtA 411 :YLQDLVEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14649 # 1vjuA.177.155 read from T0287.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)F185 (1vjuA)F164 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLMK 1vjuA 156 :VAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=14650 # 1z77A.177.130 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 177 :YVRDLLMKF 1z77A 131 :FVREKLKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14651 # 1jl1A.177.135 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 177 :YVRDLLMKF 1jl1A 136 :LARAAAMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14652 # 2b61A.177.368 read from T0287.t2k.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)F185 because last residue in template chain is (2b61A)N358 T0287 177 :YVRDLLMK 2b61A 350 :RIRDGLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14653 # 1tqhA.177.236 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 177 :YVRDLLMKF 1tqhA 237 :DIYAFLESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14654 # 1n69A.177.58 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 177 :YVRDLLMKF 1n69A 57 :IAIQMMMHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14655 # 1nznA.177.95 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 177 :YVRDLLMKF 1nznA 96 :YVRGLLQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14656 # 1lvaA.177.206 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 177 :YVRDLLMKF 1lvaA 583 :VIKNLASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14657 # 1tr9A.177.320 read from T0287.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)F185 (1tr9A)F328 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLMK 1tr9A 320 :NMQRLIEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=14658 # 1wouA.177.51 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 177 :YVRDLLMKF 1wouA 52 :VVREGLKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14659 # 2b6cA.177.192 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 177 :YVRDLLMKF 2b6cA 190 :WVEELMKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14660 # 1q7eA.177.312 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 177 :YVRDLLMKF 1q7eA 313 :EIEKYTVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14661 # 1llfA.177.360 read from T0287.t2k.many.frag # found chain 1llfA in training set T0287 177 :YVRDLLMKF 1llfA 361 :YFKQSFIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14662 # 1yjsA.177.378 read from T0287.t2k.many.frag # found chain 1yjsA in template set T0287 177 :YVRDLLMKF 1yjsA 379 :IIGLVLKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14663 # 2arhA.177.172 read from T0287.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 T0287 177 :YVRDLLMK 2arhA 171 :EFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14664 # 1uddA.177.115 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 177 :YVRDLLMKF 1uddA 116 :FMLATAYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14665 # 1uteA.177.167 read from T0287.t2k.many.frag # found chain 1uteA in training set T0287 177 :YVRDLLMKF 1uteA 168 :WIKKQLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14666 # 2d0tA.177.308 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 177 :Y 2d0tA 306 :F T0287 180 :DLLMKF 2d0tA 309 :SLESNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14668 # 1i60A.177.266 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 177 :YVRDLLMKF 1i60A 267 :TTVDVVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14669 # 1ursA.177.217 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 177 :YVRDLLMKF 1ursA 218 :LMRDMVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14670 # 1colA.177.80 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 T0287 177 :YV 1colA 81 :AL T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=14672 # 2f1rA.177.154 read from T0287.t2k.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 177 :YVRDLLM 2f1rA 155 :FILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14673 # 1f5qB.178.235 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 178 :VRDLLMKFD 1f5qB 236 :VDIAIVSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14674 # 1ifqA.178.47 read from T0287.t2k.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1ifqA 37 :AKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14675 # 1x38A.178.15 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 178 :VRDLLMKFD 1x38A 16 :VADLLGRMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14676 # 1wzdA.178.175 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 178 :VRDLLMKFD 1wzdA 176 :YREKLNNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14677 # 1n69A.178.59 read from T0287.t2k.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1n69A 58 :AIQMMMHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=14678 # 1b3tA.178.118 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 178 :VRDLLMKFD 1b3tA 579 :IKDLVMTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14679 # 2gmfA.178.109 read from T0287.t2k.many.frag # found chain 2gmfA in template set Warning: unaligning (T0287)K184 (2gmfA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLLM 2gmfA 110 :LKDFLL T0287 185 :FD 2gmfA 117 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14681 # 1nznA.178.96 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 178 :VRDLLMKFD 1nznA 97 :VRGLLQTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14682 # 2b6cA.178.193 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 178 :VRDLLMKFD 2b6cA 191 :VEELMKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14683 # 1qwtA.178.239 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 178 :VRDLLMKFD 1qwtA 412 :LQDLVEGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14684 # 1z77A.178.131 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 178 :VRDLLMKFD 1z77A 132 :VREKLKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14685 # 1jl1A.178.136 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 178 :VRDLLMKFD 1jl1A 137 :ARAAAMNPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14686 # 2d0tA.178.309 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 2d0tA 309 :SLESNP Number of specific fragments extracted= 1 number of extra gaps= 2 total=14687 # 1orc.178.6 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)F185 (1orc)F14 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLLMK 1orc 7 :LKDYAMR T0287 186 :D 1orc 15 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=14689 # 1vjuA.178.156 read from T0287.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)D186 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1vjuA 157 :AQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=14690 # 1tr9A.178.321 read from T0287.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 178 :VRDLLMKF 1tr9A 321 :MQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14691 # 1tqhA.178.237 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 178 :VRDLLMKFD 1tqhA 238 :IYAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14692 # 1yjsA.178.379 read from T0287.t2k.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)M183 (1yjsA)K385 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLL 1yjsA 380 :IGLVL T0287 184 :KFD 1yjsA 386 :NVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=14694 # 1colA.178.81 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 178 :V 1colA 82 :L T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=14696 # 1xqwA.178.284 read from T0287.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)F185 (1xqwA)H292 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 because last residue in template chain is (1xqwA)L293 T0287 178 :VRDLLMK 1xqwA 285 :LSDFILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14697 # 1uddA.178.116 read from T0287.t2k.many.frag # found chain 1uddA in template set Warning: unaligning (T0287)D186 (1uddA)N125 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1uddA 117 :MLATAYKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=14698 # 2arhA.178.173 read from T0287.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 Warning: unaligning (T0287)D186 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arhA)E180 T0287 178 :VRDLLMK 2arhA 172 :FEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14699 # 1yvrA.178.268 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 178 :VRDLLMKFD 1yvrA 269 :WKSLLQDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14700 # 1q7eA.178.313 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 178 :VRDLLMKFD 1q7eA 314 :IEKYTVTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=14701 # 1vpjA.178.102 read from T0287.t2k.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1vpjA)T91 T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14702 # 1j9lA.178.142 read from T0287.t2k.many.frag # found chain 1j9lA in template set T0287 178 :VRDLLMKFD 1j9lA 143 :LIDFLKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14703 # 1bm8.178.79 read from T0287.t2k.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1bm8 83 :AKQLAEKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=14704 # 1fo8A.178.90 read from T0287.t2k.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)D186 (1fo8A)N203 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1fo8A 195 :LGQIFHNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=14705 # 1wouA.178.52 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 178 :VRDLLMKFD 1wouA 53 :VREGLKHIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14706 # 1ursA.178.218 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 178 :VRDLLMKFD 1ursA 219 :MRDMVSKYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14707 # 1n69A.179.60 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 179 :RDLLMKFDL 1n69A 59 :IQMMMHMQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14708 # 1f5qB.179.236 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 179 :RDLLMKFDL 1f5qB 237 :DIAIVSFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14709 # 2b6cA.179.194 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)D186 (2b6cA)V199 because N (gamma') conformation "forbidden" or filtered. T0287 179 :RDLLMKF 2b6cA 192 :EELMKEL T0287 187 :L 2b6cA 200 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=14711 # 1x38A.179.16 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 179 :RDLLMKFDL 1x38A 17 :ADLLGRMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14712 # 1orc.179.7 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1orc 8 :KDYAMRF T0287 187 :L 1orc 16 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=14714 # 1wzdA.179.176 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 179 :RDLLMKFDL 1wzdA 177 :REKLNNLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14715 # 1uddA.179.117 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 179 :RDLLMKFDL 1uddA 118 :LATAYKGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14716 # 1ifqA.179.48 read from T0287.t2k.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ifqA 38 :KQLFRKL T0287 187 :L 1ifqA 46 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=14718 # 1b3tA.179.119 read from T0287.t2k.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)K184 (1b3tA)T585 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLLM 1b3tA 580 :KDLVM T0287 185 :FDL 1b3tA 586 :KPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14720 # 1ucdA.179.105 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 179 :RDLLMKFDL 1ucdA 106 :VDMRNNYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14721 # 1colA.179.82 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :L 1colA 91 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=14723 # 1yvrA.179.269 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 179 :RDLLMKFDL 1yvrA 270 :KSLLQDMPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14724 # 1j9lA.179.143 read from T0287.t2k.many.frag # found chain 1j9lA in template set T0287 179 :RDLLMKFDL 1j9lA 144 :IDFLKEFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14725 # 1bm8.179.80 read from T0287.t2k.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1bm8 84 :KQLAEKF T0287 187 :L 1bm8 92 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=14727 # 2gmfA.179.110 read from T0287.t2k.many.frag # found chain 2gmfA in template set Warning: unaligning (T0287)K184 (2gmfA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLLM 2gmfA 111 :KDFLL T0287 185 :FDL 2gmfA 117 :IPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=14729 # 1zbxB.179.46 read from T0287.t2k.many.frag # found chain 1zbxB in template set T0287 179 :RDLLMKFDL 1zbxB 526 :RAMIDQMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14730 # 1wkcA.179.10 read from T0287.t2k.many.frag # found chain 1wkcA in training set T0287 179 :RDLLMKFDL 1wkcA 11 :RAAWRRLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14731 # 1ursA.179.219 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 179 :RDLLMKFDL 1ursA 220 :RDMVSKYHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=14732 # 1ty9A.179.132 read from T0287.t2k.many.frag # found chain 1ty9A in training set T0287 179 :RDLLMKFDL 1ty9A 133 :DDAWLKRPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14733 # 1z77A.179.132 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 179 :RDLLMKFDL 1z77A 133 :REKLKDLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14734 # 1q7eA.179.314 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 179 :RDLLMKFDL 1q7eA 315 :EKYTVTIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14735 # 1jl1A.179.137 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 179 :RDLLMKFDL 1jl1A 138 :RAAAMNPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14736 # 1tqhA.179.238 read from T0287.t2k.many.frag # found chain 1tqhA in training set Warning: unaligning (T0287)L187 because last residue in template chain is (1tqhA)W247 T0287 179 :RDLLMKFD 1tqhA 239 :YAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14737 # 1wusA.179.110 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1wusA 186 :RLALMQ T0287 186 :DL 1wusA 193 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14739 # 1vpjA.179.103 read from T0287.t2k.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14740 # 1tr9A.179.322 read from T0287.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 179 :RDLLMKF 1tr9A 322 :QRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14741 # 2d0tA.179.310 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)M183 (2d0tA)S312 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLL 2d0tA 309 :SLE T0287 184 :KFDL 2d0tA 313 :NPSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=14743 # 2lisA.179.89 read from T0287.t2k.many.frag # found chain 2lisA in training set T0287 179 :RDLLMKFDL 2lisA 90 :AEIGRRIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14744 # 1t71A.179.141 read from T0287.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0287)F185 (1t71A)R148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1t71A)D149 because D (zeta) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1t71A 142 :KELILK T0287 187 :L 1t71A 150 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=14746 # 1yjsA.179.380 read from T0287.t2k.many.frag # found chain 1yjsA in template set T0287 179 :RDLLMKFDL 1yjsA 381 :GLVLKNVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14747 # 1n69A.180.61 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 180 :DLLMKFDLE 1n69A 60 :QMMMHMQPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14748 # 1orc.180.8 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 180 :DLLMKFDLE 1orc 9 :DYAMRFGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14749 # 1ucdA.180.106 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 180 :DLLMKFDLE 1ucdA 107 :DMRNNYDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=14750 # 1colA.180.83 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LE 1colA 91 :AQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=14752 # 2b6cA.180.195 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)D186 (2b6cA)V199 because N (gamma') conformation "forbidden" or filtered. T0287 180 :DLLMKF 2b6cA 193 :ELMKEL T0287 187 :LE 2b6cA 200 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14754 # 1x38A.180.17 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 180 :DLLMKFDLE 1x38A 18 :DLLGRMTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14755 # 1uddA.180.118 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 180 :DLLMKFDLE 1uddA 119 :ATAYKGNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=14756 # 1f5qB.180.237 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 180 :DLLMKFDLE 1f5qB 238 :IAIVSFDEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14757 # 1q7eA.180.315 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 180 :DLLMKFDLE 1q7eA 316 :KYTVTIDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14758 # 1j9lA.180.144 read from T0287.t2k.many.frag # found chain 1j9lA in template set T0287 180 :DLLMKFDLE 1j9lA 145 :DFLKEFDFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14759 # 1zbxB.180.47 read from T0287.t2k.many.frag # found chain 1zbxB in template set T0287 180 :DLLMKFDLE 1zbxB 527 :AMIDQMNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14760 # 1wzdA.180.177 read from T0287.t2k.many.frag # found chain 1wzdA in template set Warning: unaligning (T0287)K184 (1wzdA)N182 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E188 (1wzdA)S186 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLM 1wzdA 178 :EKLN T0287 185 :FDL 1wzdA 183 :LEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=14762 # 1wusA.180.111 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 180 :DLLMK 1wusA 187 :LALMQ T0287 186 :DLE 1wusA 193 :KLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14764 # 1yvrA.180.270 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 180 :DLLMKFDLE 1yvrA 271 :SLLQDMPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14765 # 1zi8A.180.85 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 180 :DLLMKFDLE 1zi8A 86 :KLWQAFDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=14766 # 1wkcA.180.11 read from T0287.t2k.many.frag # found chain 1wkcA in training set T0287 180 :DLLMKFDLE 1wkcA 12 :AAWRRLDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14767 # 1ty9A.180.133 read from T0287.t2k.many.frag # found chain 1ty9A in training set T0287 180 :DLLMKFDLE 1ty9A 134 :DAWLKRPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14768 # 1bm8.180.81 read from T0287.t2k.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1bm8 85 :QLAEKF T0287 187 :LE 1bm8 92 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14770 # 1ifqA.180.49 read from T0287.t2k.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKF 1ifqA 39 :QLFRKL T0287 187 :LE 1ifqA 46 :EQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14772 # 1mzgA.180.94 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 180 :DLLMKFDLE 1mzgA 95 :QDIVNFDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14773 # 1b3tA.180.120 read from T0287.t2k.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)E188 (1b3tA)P589 because C (cis) conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 1b3tA 581 :DLVMTKPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14774 # 1ursA.180.220 read from T0287.t2k.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E188 (1ursA)M229 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKF 1ursA 221 :DMVSKY T0287 187 :L 1ursA 228 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=14776 # 1j5sA.180.140 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 180 :DL 1j5sA 129 :KK T0287 184 :KFDLE 1j5sA 133 :EMTPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14778 # 2lisA.180.90 read from T0287.t2k.many.frag # found chain 2lisA in training set T0287 180 :DLLMKFDLE 2lisA 91 :EIGRRIDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14779 # 1t77A.180.128 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 180 :DLLMKFDLE 1t77A 2204 :QLFKASNMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14780 # 1vpjA.180.104 read from T0287.t2k.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E188 (1vpjA)M101 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKFD 1vpjA 93 :KILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14781 # 1rkxA.180.334 read from T0287.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 180 :DLLM 1rkxA 335 :NWLS T0287 185 :FDLE 1rkxA 340 :TDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=14783 # 1pyaB.180.200 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 180 :DLLMKFDLE 1pyaB 283 :EIMENLTMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14784 # 1yo3A.180.39 read from T0287.t2k.many.frag # found chain 1yo3A in training set T0287 180 :DLLMKFDLE 1yo3A 21 :QALQKYNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14785 # 2gmfA.180.111 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 180 :DLLMKFDLE 2gmfA 112 :DFLLVIPFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14786 # 1n69A.181.62 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 181 :LLMKFDLEK 1n69A 61 :MMMHMQPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14787 # 1ucdA.181.107 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 181 :LLMKFDLEK 1ucdA 108 :MRNNYDIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14788 # 1orc.181.9 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 181 :LLMKF 1orc 10 :YAMRF T0287 187 :LEK 1orc 16 :QTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14790 # 1colA.181.84 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LEK 1colA 91 :AQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14792 # 1q7eA.181.316 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 181 :LLMKFDLEK 1q7eA 317 :YTVTIDKHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14793 # 1x38A.181.18 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 181 :LLMKFDLEK 1x38A 19 :LLGRMTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14794 # 2b6cA.181.196 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 181 :LLMKFDLEK 2b6cA 194 :LMKELVLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14795 # 1wusA.181.112 read from T0287.t2k.many.frag # found chain 1wusA in template set T0287 181 :LLMKFDLEK 1wusA 188 :ALMQKKLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14796 # 1zi8A.181.86 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 181 :LLMKFDLEK 1zi8A 87 :LWQAFDMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14797 # 1uddA.181.119 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 181 :LLMKFDLEK 1uddA 120 :TAYKGNIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14798 # 1mzgA.181.95 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 181 :LLMKFDLEK 1mzgA 96 :DIVNFDVRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14799 # 1j9lA.181.145 read from T0287.t2k.many.frag # found chain 1j9lA in template set T0287 181 :LLMKFDLEK 1j9lA 146 :FLKEFDFSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14800 # 1yvrA.181.271 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 181 :LLMKFDLEK 1yvrA 272 :LLQDMPLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14801 # 1wkcA.181.12 read from T0287.t2k.many.frag # found chain 1wkcA in training set T0287 181 :LLMKFDLEK 1wkcA 13 :AWRRLDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14802 # 1pyaB.181.201 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 181 :LLMKFDLEK 1pyaB 284 :IMENLTMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14803 # 2b8nA.181.393 read from T0287.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 2b8nA 382 :YLKN T0287 186 :DLEK 2b8nA 387 :DSYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14805 # 1zbxB.181.48 read from T0287.t2k.many.frag # found chain 1zbxB in template set Warning: unaligning (T0287)D186 (1zbxB)N533 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1zbxB 528 :MIDQM T0287 187 :LEK 1zbxB 534 :LVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14807 # 1bm8.181.82 read from T0287.t2k.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)F185 (1bm8)F90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1bm8 86 :LAEK T0287 187 :LEK 1bm8 92 :VYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14809 # 1fs1A.181.19 read from T0287.t2k.many.frag # found chain 1fs1A in training set T0287 181 :LLMKFDLEK 1fs1A 120 :IFSCLCLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14810 # 1rz4A.181.107 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1rz4A 108 :LLET T0287 186 :DLEK 1rz4A 113 :HFQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14812 # 2d0tA.181.312 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 181 :LLMKFDLEK 2d0tA 310 :LESNPSVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14813 # 1rkxA.181.335 read from T0287.t2k.many.frag # found chain 1rkxA in template set T0287 181 :LLMKFDLEK 1rkxA 336 :WLSGTDMHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14814 # 2c1lA.181.146 read from T0287.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 181 :LLM 2c1lA 147 :QSM T0287 185 :FDLEK 2c1lA 151 :FSWND Number of specific fragments extracted= 2 number of extra gaps= 1 total=14816 # 1t77A.181.129 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 181 :LLMKFDLEK 1t77A 2205 :LFKASNMTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14817 # 1r5yA.181.363 read from T0287.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1r5yA 364 :SISE T0287 186 :DLEK 1r5yA 369 :RFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14819 # 1j5sA.181.141 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 181 :L 1j5sA 130 :K T0287 184 :KF 1j5sA 133 :EM T0287 187 :LEK 1j5sA 136 :PQK Number of specific fragments extracted= 3 number of extra gaps= 2 total=14822 # 1ty9A.181.134 read from T0287.t2k.many.frag # found chain 1ty9A in training set T0287 181 :LLMKFDLEK 1ty9A 135 :AWLKRPYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14823 # 1wzdA.181.178 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 181 :LLMKFDLEK 1wzdA 179 :KLNNLELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14824 # 1vk9A.181.130 read from T0287.t2k.many.frag # found chain 1vk9A in template set T0287 181 :LLMKFDLEK 1vk9A 119 :VLEMDDPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14825 # 1yo3A.181.40 read from T0287.t2k.many.frag # found chain 1yo3A in training set T0287 181 :LLMKFDLEK 1yo3A 22 :ALQKYNVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14826 # 1n69A.182.63 read from T0287.t2k.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1n69A 62 :MMHM T0287 187 :LEKY 1n69A 67 :PKEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14828 # 1ucdA.182.108 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 182 :LMKFDLEKY 1ucdA 109 :RNNYDIIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14829 # 1orc.182.10 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 182 :LMKFDLEKY 1orc 11 :AMRFGQTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14830 # 1colA.182.85 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 182 :LMK 1colA 86 :WKH T0287 187 :LEKY 1colA 91 :AQDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=14832 # 1q7eA.182.317 read from T0287.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0287)K184 (1q7eA)T320 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LM 1q7eA 318 :TV T0287 185 :FDLEKY 1q7eA 321 :IDKHEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14834 # 1wusA.182.113 read from T0287.t2k.many.frag # found chain 1wusA in template set T0287 182 :LMKFDLEKY 1wusA 189 :LMQKKLSEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14835 # 1j2rA.182.117 read from T0287.t2k.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)K184 (1j2rA)G120 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 1j2rA 118 :FY T0287 185 :FDLEKY 1j2rA 121 :TDLELQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14837 # 2c1lA.182.147 read from T0287.t2k.many.frag # found chain 2c1lA in template set T0287 182 :LMKFDLEKY 2c1lA 148 :SMGFSWNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14838 # 1zi8A.182.87 read from T0287.t2k.many.frag # found chain 1zi8A in template set Warning: unaligning (T0287)K184 (1zi8A)A90 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LM 1zi8A 88 :WQ T0287 185 :FDLEKY 1zi8A 91 :FDMEAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=14840 # 1mzgA.182.96 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 182 :LMKFDLEKY 1mzgA 97 :IVNFDVRPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=14841 # 1pyaB.182.202 read from T0287.t2k.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1pyaB 285 :MENL T0287 187 :LEKY 1pyaB 290 :MPEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=14843 # 1x38A.182.19 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 182 :LMKFDLEKY 1x38A 20 :LGRMTLAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14844 # 2b8nA.182.394 read from T0287.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)K184 (2b8nA)N385 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 182 :LM 2b8nA 383 :LK T0287 186 :DLEKY 2b8nA 387 :DSYNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14846 # 1rz4A.182.108 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1rz4A 109 :LET T0287 186 :DLEKY 1rz4A 113 :HFQAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=14848 # 2d0tA.182.313 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 182 :LMKFDLEKY 2d0tA 311 :ESNPSVREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14849 # 1yvrA.182.272 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 182 :LMKFDLEKY 1yvrA 273 :LQDMPLTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14850 # 1xcrA.182.75 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 182 :LMKFDLEKY 1xcrA 75 :KKVYDLNKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14851 # 1rkxA.182.336 read from T0287.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 1rkxA 337 :LS T0287 185 :FDLEKY 1rkxA 340 :TDMHEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14853 # 1qouA.182.146 read from T0287.t2k.many.frag # found chain 1qouA in template set T0287 182 :LMKFDLEKY 1qouA 146 :RDGFNTRKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14854 # 1uddA.182.120 read from T0287.t2k.many.frag # found chain 1uddA in template set Warning: unaligning (T0287)D186 (1uddA)N125 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1uddA 121 :AYKG T0287 187 :LEKY 1uddA 126 :IIEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=14856 # 1wkcA.182.13 read from T0287.t2k.many.frag # found chain 1wkcA in training set T0287 182 :LMKFDLEKY 1wkcA 14 :WRRLDLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14857 # 1ujpA.182.236 read from T0287.t2k.many.frag # found chain 1ujpA in training set T0287 182 :LMKFDLEKY 1ujpA 237 :EEGRSLAPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14858 # 1j5sA.182.142 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1j5sA 133 :EM T0287 187 :LEKY 1j5sA 136 :PQKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=14860 # 1sa3A.182.127 read from T0287.t2k.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)M183 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. T0287 182 :L 1sa3A 128 :I T0287 184 :KFDLEKY 1sa3A 130 :EYDVETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14862 # 1r5yA.182.364 read from T0287.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1r5yA 365 :ISE T0287 186 :DLEKY 1r5yA 369 :RFSQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=14864 # 1vk9A.182.131 read from T0287.t2k.many.frag # found chain 1vk9A in template set T0287 182 :LMKFDLEKY 1vk9A 120 :LEMDDPEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14865 # 1fs1A.182.20 read from T0287.t2k.many.frag # found chain 1fs1A in training set T0287 182 :LMKFDLEKY 1fs1A 121 :FSCLCLPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14866 # 1fs7A.182.431 read from T0287.t2k.many.frag # found chain 1fs7A in training set T0287 182 :LMKFDLEKY 1fs7A 454 :LAKVDMEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14867 # 2cwcA.182.178 read from T0287.t2k.many.frag # found chain 2cwcA in template set T0287 182 :LMKFDLEKY 2cwcA 179 :LRGAPKEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14868 # 1j1jA.182.87 read from T0287.t2k.many.frag # found chain 1j1jA in template set Warning: unaligning (T0287)D186 (1j1jA)P80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K189 (1j1jA)Q83 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LMKF 1j1jA 76 :KTKF T0287 187 :LE 1j1jA 81 :AE T0287 190 :Y 1j1jA 84 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=14871 # 1n69A.183.64 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 183 :MKFDLEKYM 1n69A 63 :MHMQPKEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=14872 # 1orc.183.11 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 183 :MKFDLEKYM 1orc 12 :MRFGQTKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14873 # 1ucdA.183.109 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 183 :MKFDLEKYM 1ucdA 110 :NNYDIIGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14874 # 1qouA.183.147 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)M183 (1qouA)D147 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KFDLEKYM 1qouA 148 :GFNTRKFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=14875 # 1colA.183.86 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 183 :MK 1colA 87 :KH T0287 187 :LEKYM 1colA 91 :AQDMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14877 # 1oz2A.183.223 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 183 :MKFDLEKYM 1oz2A 420 :DNFCWEKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14878 # 1j2rA.183.118 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 183 :MKFDLEKYM 1j2rA 119 :YGTDLELQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14879 # 1pyaB.183.203 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 183 :MKFDLEKYM 1pyaB 286 :ENLTMPEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14880 # 2c1lA.183.148 read from T0287.t2k.many.frag # found chain 2c1lA in template set T0287 183 :MKFDLEKYM 2c1lA 149 :MGFSWNDMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14881 # 1xcrA.183.76 read from T0287.t2k.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)K184 (1xcrA)V77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 183 :M 1xcrA 76 :K T0287 185 :F 1xcrA 78 :Y T0287 187 :LEKYM 1xcrA 80 :LNKIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=14884 # 1q7eA.183.318 read from T0287.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0287)K184 (1q7eA)T320 because G (3-10) conformation "forbidden" or filtered. T0287 183 :M 1q7eA 319 :V T0287 185 :FDLEKYM 1q7eA 321 :IDKHEAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14886 # 1wusA.183.114 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1wusA 190 :MQ T0287 186 :DLEKYM 1wusA 193 :KLSEYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=14888 # 2b8nA.183.395 read from T0287.t2k.many.frag # found chain 2b8nA in template set T0287 183 :MKFDLEKYM 2b8nA 384 :KNNDSYNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14889 # 2d0tA.183.314 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 183 :MKFDLEKYM 2d0tA 312 :SNPSVREFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14890 # 1mzgA.183.97 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 183 :MKFDLEKYM 1mzgA 98 :VNFDVRPWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14891 # 1sa3A.183.128 read from T0287.t2k.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)M183 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. T0287 184 :KFDLEKYM 1sa3A 130 :EYDVETIC Number of specific fragments extracted= 1 number of extra gaps= 1 total=14892 # 1l3lA.183.186 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)K184 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1l3lA)T190 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :M 1l3lA 187 :V T0287 185 :F 1l3lA 189 :K T0287 187 :LEKYM 1l3lA 191 :MEEIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=14895 # 1rz4A.183.109 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1rz4A)H113 because N (gamma') conformation "forbidden" or filtered. T0287 183 :MK 1rz4A 110 :ET T0287 187 :LEKYM 1rz4A 114 :FQAFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=14897 # 1zi8A.183.88 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 183 :MKFDLEKYM 1zi8A 89 :QAFDMEAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14898 # 1l5aA.183.308 read from T0287.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)D186 (1l5aA)R312 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :MKF 1l5aA 309 :GRY T0287 187 :LEKYM 1l5aA 313 :IEQIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14900 # 1x38A.183.20 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 183 :MKFDLEKYM 1x38A 21 :GRMTLAEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14901 # 1ujpA.183.237 read from T0287.t2k.many.frag # found chain 1ujpA in training set T0287 183 :MKFDLEKYM 1ujpA 238 :EGRSLAPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14902 # 1uocA.183.224 read from T0287.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 T0287 185 :FDLEKYM 1uocA 227 :YSLTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14903 # 1rkxA.183.337 read from T0287.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 1rkxA 338 :S T0287 185 :FDLEKYM 1rkxA 340 :TDMHEYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14905 # 1r5yA.183.365 read from T0287.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1r5yA 366 :SE T0287 186 :DLEKYM 1r5yA 369 :RFSQFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14907 # 1yvrA.183.273 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 183 :MKFDLEKYM 1yvrA 274 :QDMPLTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14908 # 1o2dA.183.311 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1o2dA)S303 because E (beta_S) conformation "forbidden" or filtered. T0287 183 :MK 1o2dA 300 :FG T0287 187 :LEKYM 1o2dA 304 :LLKFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14910 # 1oz2A.183.115 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 183 :MKFDLEKYM 1oz2A 312 :EEFSWSQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14911 # 1j5sA.183.143 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 184 :KFDLEKYM 1j5sA 133 :EMTPQKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14912 # 1vk4A.183.258 read from T0287.t2k.many.frag # found chain 1vk4A in template set T0287 183 :MKFDLEKYM 1vk4A 247 :KKMSIEKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14913 # 1n69A.184.65 read from T0287.t2k.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1n69A 64 :HM T0287 187 :LEKYMK 1n69A 67 :PKEICA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14915 # 1qouA.184.148 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1qouA 149 :FNTRKFTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=14916 # 1oz2A.184.224 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 421 :NFCWEKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14917 # 1orc.184.12 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)F185 (1orc)F14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 184 :K 1orc 13 :R T0287 187 :LEKYMK 1orc 16 :QTKTAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14919 # 1j2rA.184.119 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 184 :KFDLEKYMK 1j2rA 120 :GTDLELQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14920 # 2c1lA.184.149 read from T0287.t2k.many.frag # found chain 2c1lA in template set T0287 184 :KFDLEKYMK 2c1lA 150 :GFSWNDMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14921 # 1pyaB.184.204 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 184 :KFDLEKYMK 1pyaB 287 :NLTMPEWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14922 # 1xcrA.184.77 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 184 :KFDLEKYMK 1xcrA 77 :VYDLNKIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14923 # 1ucdA.184.110 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 184 :KFDLEKYMK 1ucdA 111 :NYDIIGALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14924 # 1o2dA.184.312 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K184 (1o2dA)G301 because T (delta_L) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1o2dA 302 :GSLLKFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14925 # 1wusA.184.115 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1wusA 191 :Q T0287 186 :DLEKYMK 1wusA 193 :KLSEYMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14927 # 2d0tA.184.315 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 184 :KFDLEKYMK 2d0tA 313 :NPSVREFVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14928 # 1colA.184.87 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 184 :K 1colA 88 :H T0287 187 :LEKYMK 1colA 91 :AQDMAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14930 # 1l5aA.184.309 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 184 :KFDLEKYMK 1l5aA 310 :RYRIEQIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14931 # 1l3lA.184.187 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)K184 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1l3lA 189 :KTMEEIAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14932 # 1oz2A.184.116 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 313 :EFSWSQYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14933 # 2b8nA.184.396 read from T0287.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 184 :K 2b8nA 385 :N T0287 186 :DLEKYMK 2b8nA 387 :DSYNALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14935 # 1mzgA.184.98 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 184 :KFDLEKYMK 1mzgA 99 :NFDVRPWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14936 # 1f86A.184.62 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 184 :KFDLEKYMK 1f86A 72 :EIDTKSYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14937 # 1ywfA.184.269 read from T0287.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)F185 (1ywfA)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 184 :K 1ywfA 250 :Y T0287 187 :LEKYMK 1ywfA 253 :LGGYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14939 # 1j54A.184.141 read from T0287.t2k.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)D186 (1j54A)S144 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1j54A 142 :RN T0287 187 :LEKYMK 1j54A 145 :LDALCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14941 # 1ujpA.184.238 read from T0287.t2k.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1ujpA 240 :RSLAPLLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=14942 # 1sa3A.184.129 read from T0287.t2k.many.frag # found chain 1sa3A in template set T0287 184 :KFDLEKYMK 1sa3A 130 :EYDVETICT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14943 # 1uocA.184.225 read from T0287.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 Warning: unaligning (T0287)D186 (1uocA)S228 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1uocA 227 :Y T0287 187 :LEKYMK 1uocA 229 :LTTLAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14945 # 1r5yA.184.366 read from T0287.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1r5yA 367 :E T0287 186 :DLEKYMK 1r5yA 369 :RFSQFAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14947 # 1rz4A.184.110 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1rz4A 111 :T T0287 186 :DLEKYMK 1rz4A 113 :HFQAFWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14949 # 1mtyG.184.145 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 184 :KFDLEKYMK 1mtyG 149 :DTPLEELRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14950 # 1zi8A.184.89 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 184 :KFDLEKYMK 1zi8A 90 :AFDMEAGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14951 # 1j5sA.184.144 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 184 :KFDLEKYMK 1j5sA 133 :EMTPQKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14952 # 1q7eA.184.319 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 184 :KFDLEKYMK 1q7eA 320 :TIDKHEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14953 # 1oz2A.185.225 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 422 :FCWEKYLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14954 # 1qouA.185.149 read from T0287.t2k.many.frag # found chain 1qouA in template set T0287 185 :FDLEKYMKE 1qouA 149 :FNTRKFTQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14955 # 1pyaB.185.205 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 185 :FDLEKYMKE 1pyaB 288 :LTMPEWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14956 # 1n69A.185.66 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 185 :FDLEKYMKE 1n69A 65 :MQPKEICAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14957 # 1j2rA.185.120 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 185 :FDLEKYMKE 1j2rA 121 :TDLELQLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14958 # 1orc.185.13 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 185 :FDLEKYMKE 1orc 14 :FGQTKTAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14959 # 2c1lA.185.150 read from T0287.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)D186 (2c1lA)S152 because E (beta_S) conformation "forbidden" or filtered. T0287 185 :F 2c1lA 151 :F T0287 187 :LEKYMKE 2c1lA 153 :WNDMISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14961 # 1ywfA.185.270 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 185 :FDLEKYMKE 1ywfA 251 :GSLGGYLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14962 # 1o2dA.185.313 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 185 :FDLEKYMKE 1o2dA 302 :GSLLKFLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14963 # 1oz2A.185.117 read from T0287.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)S315 because E (beta_S) conformation "forbidden" or filtered. T0287 185 :F 1oz2A 314 :F T0287 187 :LEKYMKE 1oz2A 316 :WSQYLRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14965 # 1l5aA.185.310 read from T0287.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)D186 (1l5aA)R312 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1l5aA 311 :Y T0287 187 :LEKYMKE 1l5aA 313 :IEQIEQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14967 # 1xcrA.185.78 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 185 :FDLEKYMKE 1xcrA 78 :YDLNKIAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14968 # 1f86A.185.63 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 185 :FDLEKYMKE 1f86A 73 :IDTKSYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14969 # 1wusA.185.116 read from T0287.t2k.many.frag # found chain 1wusA in template set T0287 185 :FDLEKYMKE 1wusA 192 :KKLSEYMKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14970 # 1j54A.185.142 read from T0287.t2k.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)D186 (1j54A)S144 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1j54A 143 :N T0287 187 :LEKYMKE 1j54A 145 :LDALCAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14972 # 1mtyG.185.146 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 185 :FDLEKYMKE 1mtyG 150 :TPLEELRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14973 # 1uocA.185.226 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 185 :FDLEKYMKE 1uocA 227 :YSLTTLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14974 # 2d0tA.185.316 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 2d0tA 314 :P T0287 187 :LEKYMKE 2d0tA 316 :VREFVLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14976 # 1ucdA.185.111 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 185 :FDLEKYMKE 1ucdA 112 :YDIIGALRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14977 # 2c71A.185.182 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 185 :FDLEKYMKE 2c71A 658 :VTLTELFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14978 # 1l3lA.185.188 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 185 :FDLEKYMKE 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14979 # 1wkqA.185.119 read from T0287.t2k.many.frag # found chain 1wkqA in training set T0287 185 :FDLEKYMKE 1wkqA 112 :FDDSFIYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14980 # 1sa3A.185.130 read from T0287.t2k.many.frag # found chain 1sa3A in template set T0287 185 :FDLEKYMKE 1sa3A 131 :YDVETICTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14981 # 1ujpA.185.239 read from T0287.t2k.many.frag # found chain 1ujpA in training set T0287 185 :FDLEKYMKE 1ujpA 240 :RSLAPLLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14982 # 1um0A.185.103 read from T0287.t2k.many.frag # found chain 1um0A in template set T0287 185 :FDLEKYMKE 1um0A 104 :HADFTYFHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14983 # 1w5rA.185.5 read from T0287.t2k.many.frag # found chain 1w5rA in template set Warning: unaligning (T0287)F185 because first residue in template chain is (1w5rA)M3 T0287 186 :DLEKYMKE 1w5rA 4 :DLGGYLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14984 # 1rz4A.185.111 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1rz4A 113 :HFQAFWQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14985 # 1colA.185.88 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 187 :LEKYMKE 1colA 91 :AQDMANK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14986 # 1mzgA.185.99 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 185 :FDLEKYMKE 1mzgA 100 :FDVRPWFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14987 # 1ifc.185.12 read from T0287.t2k.many.frag # found chain 1ifc in training set T0287 185 :FDLEKYMKE 1ifc 12 :ENYEKFMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14988 # 1oz2A.186.226 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 423 :CWEKYLEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=14989 # 1qouA.186.150 read from T0287.t2k.many.frag # found chain 1qouA in template set T0287 186 :DLEKYMKEK 1qouA 150 :NTRKFTQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14990 # 1pyaB.186.206 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 186 :DLEKYMKEK 1pyaB 289 :TMPEWLEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14991 # 1o2dA.186.314 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K194 (1o2dA)L311 because G (3-10) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1o2dA 303 :SLLKFLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14992 # 1j2rA.186.121 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 186 :DLEKYMKEK 1j2rA 122 :DLELQLRRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14993 # 1ywfA.186.271 read from T0287.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ywfA 253 :LGGYLRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14994 # 1orc.186.14 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 186 :DLEKYMKEK 1orc 15 :GQTKTAKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14995 # 1n69A.186.67 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 186 :DLEKYMKEK 1n69A 66 :QPKEICALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14996 # 2c1lA.186.151 read from T0287.t2k.many.frag # found chain 2c1lA in template set T0287 186 :DLEKYMKEK 2c1lA 152 :SWNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14997 # 1oz2A.186.118 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 315 :SWSQYLRST Number of specific fragments extracted= 1 number of extra gaps= 0 total=14998 # 1xcrA.186.79 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 186 :DLEKYMKEK 1xcrA 79 :DLNKIAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14999 # 1l5aA.186.311 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 186 :DLEKYMKEK 1l5aA 312 :RIEQIEQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15000 # 1f86A.186.64 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 186 :DLEKYMKEK 1f86A 74 :DTKSYWKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15001 # 1j54A.186.143 read from T0287.t2k.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)K194 (1j54A)Y152 because G (3-10) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1j54A 144 :SLDALCAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15002 # 1mtyG.186.147 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 186 :DLEKYMKEK 1mtyG 151 :PLEELRKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15003 # 2d0tA.186.317 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 186 :DLEKYMKEK 2d0tA 315 :SVREFVLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15004 # 2c71A.186.183 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 186 :DLEKYMKEK 2c71A 659 :TLTELFTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15005 # 1jr2A.186.170 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 186 :DLEKYMKEK 1jr2A 150 :ILPKALKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15006 # 1wusA.186.117 read from T0287.t2k.many.frag # found chain 1wusA in template set T0287 186 :DLEKYMKEK 1wusA 193 :KLSEYMKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15007 # 1uocA.186.227 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 186 :DLEKYMKEK 1uocA 228 :SLTTLADEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15008 # 1jubA.186.287 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 186 :DLEKYMKEK 1jubA 288 :ELEEIMNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15009 # 1vbkA.186.245 read from T0287.t2k.many.frag # found chain 1vbkA in template set T0287 186 :DLEKYMKEK 1vbkA 246 :RVLKLIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15010 # 1ucdA.186.112 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 186 :DLEKYMKEK 1ucdA 113 :DIIGALRPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15011 # 1ifc.186.13 read from T0287.t2k.many.frag # found chain 1ifc in training set T0287 186 :DLEKYMKEK 1ifc 13 :NYEKFMEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15012 # 1um0A.186.104 read from T0287.t2k.many.frag # found chain 1um0A in template set T0287 186 :DLEKYMKEK 1um0A 105 :ADFTYFHKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15013 # 1mtpA.186.263 read from T0287.t2k.many.frag # found chain 1mtpA in training set T0287 186 :DLEKYMKEK 1mtpA 266 :QLVEVLAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15014 # 1zsqA.186.140 read from T0287.t2k.many.frag # found chain 1zsqA in template set T0287 186 :DLEKYMKEK 1zsqA 210 :DPLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15015 # 1od6A.186.72 read from T0287.t2k.many.frag # found chain 1od6A in training set T0287 186 :DLEKYMKEK 1od6A 73 :LLVDFVRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15016 # 2b8nA.186.398 read from T0287.t2k.many.frag # found chain 2b8nA in template set T0287 186 :DLEKYMKEK 2b8nA 387 :DSYNALKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15017 # 1ko6A.186.157 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 186 :DLEKYMKEK 1ko6A 834 :RLEAVSRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15018 # 1oz2A.187.227 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 424 :WEKYLEETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15019 # 1o2dA.187.315 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 187 :LEKYMKEKG 1o2dA 304 :LLKFLKELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15020 # 1ywfA.187.272 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 187 :LEKYMKEKG 1ywfA 253 :LGGYLRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15021 # 1qouA.187.151 read from T0287.t2k.many.frag # found chain 1qouA in template set T0287 187 :LEKYMKEKG 1qouA 151 :TRKFTQENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15022 # 1pyaB.187.207 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 187 :LEKYMKEKG 1pyaB 290 :MPEWLEKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15023 # 1j2rA.187.122 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 187 :LEKYMKEKG 1j2rA 123 :LELQLRRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15024 # 1l5aA.187.312 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 187 :LEKYMKEKG 1l5aA 313 :IEQIEQDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15025 # 1f86A.187.65 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 187 :LEKYMKEKG 1f86A 75 :TKSYWKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15026 # 1n69A.187.68 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 187 :LEKYMKEKG 1n69A 67 :PKEICALVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15027 # 1orc.187.15 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 187 :LEKYMKEKG 1orc 16 :QTKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15028 # 1j54A.187.144 read from T0287.t2k.many.frag # found chain 1j54A in training set T0287 187 :LEKYMKEKG 1j54A 145 :LDALCARYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15029 # 1mtyG.187.148 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 187 :LEKYMKEKG 1mtyG 152 :LEELRKQRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15030 # 1oz2A.187.119 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 316 :WSQYLRSTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15031 # 2c71A.187.184 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 187 :LEKYMKEKG 2c71A 660 :LTELFTLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15032 # 1jr2A.187.171 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 187 :LEKYMKEKG 1jr2A 151 :LPKALKDKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15033 # 1vbkA.187.246 read from T0287.t2k.many.frag # found chain 1vbkA in template set T0287 187 :LEKYMKEKG 1vbkA 247 :VLKLIRDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15034 # 1xcrA.187.80 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 187 :LEKYMKEKG 1xcrA 80 :LNKIAKEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15035 # 1jubA.187.288 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 187 :LEKYMKEKG 1jubA 289 :LEEIMNQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15036 # 2c1lA.187.152 read from T0287.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)G195 (2c1lA)L161 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 2c1lA 153 :WNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15037 # 1zsqA.187.141 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 T0287 187 :LEKYMKEK 1zsqA 211 :PLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15038 # 1e5kA.187.156 read from T0287.t2k.many.frag # found chain 1e5kA in training set T0287 187 :LEKYMKEKG 1e5kA 157 :VMVFMRLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15039 # 1ux5A.187.359 read from T0287.t2k.many.frag # found chain 1ux5A in template set T0287 187 :LEKYMKEKG 1ux5A 1709 :FESLMHTYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15040 # 1i0dA.187.298 read from T0287.t2k.many.frag # found chain 1i0dA in training set T0287 187 :LEKYMKEKG 1i0dA 332 :VIPFLREKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15041 # 1u4bA.187.514 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 187 :LEKYMKEKG 1u4bA 811 :LNARLKEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=15042 # 1l3lA.187.190 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 187 :LEKYMKEKG 1l3lA 191 :MEEIADVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15043 # 1w6gA.187.115 read from T0287.t2k.many.frag # found chain 1w6gA in template set T0287 187 :LEKYMKEKG 1w6gA 118 :WLKALAARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15044 # 1ko6A.187.158 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 187 :LEKYMKEKG 1ko6A 835 :LEAVSRKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15045 # 2bdeA.187.283 read from T0287.t2k.many.frag # found chain 2bdeA in template set T0287 187 :LEKYMKEKG 2bdeA 284 :AKKFTEDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15046 # 1t0fC.187.32 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 187 :LEKYMKEKG 1t0fC 534 :MHERLKGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15047 # 1uocA.187.228 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 187 :LEKYMKEKG 1uocA 229 :LTTLADELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15048 # 1oz2A.188.228 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 425 :EKYLEETGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15049 # 1j2rA.188.123 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 188 :EKYMKEKGV 1j2rA 124 :ELQLRRRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15050 # 1o2dA.188.316 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 188 :EKYMKEKGV 1o2dA 305 :LKFLKELGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15051 # 1qouA.188.152 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)V196 (1qouA)L160 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKEKG 1qouA 152 :RKFTQENE Number of specific fragments extracted= 1 number of extra gaps= 1 total=15052 # 1ywfA.188.273 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 188 :EKYMKEKGV 1ywfA 254 :GGYLRDAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15053 # 1pyaB.188.208 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 188 :EKYMKEKGV 1pyaB 291 :PEWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15054 # 1l5aA.188.313 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 188 :EKYMKEKGV 1l5aA 314 :EQIEQDQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15055 # 1i0dA.188.299 read from T0287.t2k.many.frag # found chain 1i0dA in training set T0287 188 :EKYMKEKGV 1i0dA 333 :IPFLREKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15056 # 1mtyG.188.149 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 188 :EKYMKEKGV 1mtyG 153 :EELRKQRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15057 # 1n69A.188.69 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 188 :EKYMKEKGV 1n69A 68 :KEICALVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15058 # 1jr2A.188.172 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 188 :EKYMKEKGV 1jr2A 152 :PKALKDKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15059 # 1jubA.188.289 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 188 :EKYMKEKGV 1jubA 290 :EEIMNQKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15060 # 1j54A.188.145 read from T0287.t2k.many.frag # found chain 1j54A in training set T0287 188 :EKYMKEKGV 1j54A 146 :DALCARYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15061 # 1f86A.188.66 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 188 :EKYMKEKGV 1f86A 76 :KSYWKALGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15062 # 2nacA.188.167 read from T0287.t2k.many.frag # found chain 2nacA in training set T0287 188 :EKYMKEKGV 2nacA 168 :SHEWARKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15063 # 1ko6A.188.159 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 188 :EKYMKEKGV 1ko6A 836 :EAVSRKQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15064 # 1t0fC.188.33 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 188 :EKYMKEKGV 1t0fC 535 :HERLKGKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15065 # 2c71A.188.185 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 188 :EKYMKEKGV 2c71A 661 :TELFTLKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15066 # 1orc.188.16 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)K194 (1orc)L23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 T0287 188 :EKYMKE 1orc 17 :TKTAKD T0287 195 :G 1orc 24 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=15068 # 1u4bA.188.515 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 188 :EKYMKEKGV 1u4bA 812 :NARLKEERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15069 # 1vbkA.188.247 read from T0287.t2k.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)K194 (1vbkA)F254 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1vbkA 248 :LKLIRD T0287 195 :GV 1vbkA 255 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=15071 # 1zsqA.188.142 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 T0287 188 :EKYMKEK 1zsqA 212 :LLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15072 # 1e5kA.188.157 read from T0287.t2k.many.frag # found chain 1e5kA in training set T0287 188 :EKYMKEKGV 1e5kA 158 :MVFMRLAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15073 # 1lxjA.188.63 read from T0287.t2k.many.frag # found chain 1lxjA in training set T0287 188 :EKYMKEKGV 1lxjA 64 :HEYGHEKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15074 # 1nuuA.188.223 read from T0287.t2k.many.frag # found chain 1nuuA in template set T0287 188 :EKYMKEKGV 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15075 # 1oz2A.188.120 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 317 :SQYLRSTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15076 # 1l1sA.188.72 read from T0287.t2k.many.frag # found chain 1l1sA in template set T0287 188 :EKYMKEKGV 1l1sA 73 :SNTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15077 # 1l3lA.188.191 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 188 :EKYMKEKGV 1l3lA 192 :EEIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15078 # 2d1pB.188.79 read from T0287.t2k.many.frag # found chain 2d1pB in template set T0287 188 :EKYMKEKGV 2d1pB 80 :AASLRERGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15079 # 1ux5A.188.360 read from T0287.t2k.many.frag # found chain 1ux5A in template set T0287 188 :EKYMKEKGV 1ux5A 1710 :ESLMHTYGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15080 # 1j2rA.189.124 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 189 :KYMKEKGVQ 1j2rA 125 :LQLRRRGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=15081 # 1oz2A.189.229 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 189 :KYMKEKGVQ 1oz2A 426 :KYLEETGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15082 # 1o2dA.189.317 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 189 :KYMKEKGVQ 1o2dA 306 :KFLKELGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15083 # 1ywfA.189.274 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 189 :KYMKEKGVQ 1ywfA 255 :GYLRDAGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15084 # 1pyaB.189.209 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 189 :KYMKEKGVQ 1pyaB 292 :EWLEKMGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15085 # 1i0dA.189.300 read from T0287.t2k.many.frag # found chain 1i0dA in training set T0287 189 :KYMKEKGVQ 1i0dA 334 :PFLREKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15086 # 1qouA.189.153 read from T0287.t2k.many.frag # found chain 1qouA in template set T0287 189 :KYMKEKGVQ 1qouA 153 :KFTQENELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15087 # 1l5aA.189.314 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 189 :KYMKEKGVQ 1l5aA 315 :QIEQDQGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15088 # 1mtyG.189.150 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 189 :KYMKEKGVQ 1mtyG 154 :ELRKQRGVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15089 # 1u4bA.189.516 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 189 :KYMKEKGVQ 1u4bA 813 :ARLKEERLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15090 # 1t0fC.189.34 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 189 :KYMKEKGVQ 1t0fC 536 :ERLKGKGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15091 # 2nacA.189.168 read from T0287.t2k.many.frag # found chain 2nacA in training set T0287 189 :KYMKEKGVQ 2nacA 169 :HEWARKGGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15092 # 1f86A.189.67 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 189 :KYMKEKGVQ 1f86A 77 :SYWKALGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15093 # 1jubA.189.290 read from T0287.t2k.many.frag # found chain 1jubA in training set Warning: unaligning (T0287)Q197 (1jubA)Q299 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1jubA 291 :EIMNQKGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=15094 # 1zsqA.189.143 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 189 :KYMKEK 1zsqA 213 :LEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15095 # 1jr2A.189.173 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)Q197 (1jr2A)A161 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1jr2A 153 :KALKDKGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15096 # 1j54A.189.146 read from T0287.t2k.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)Q197 (1j54A)D155 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1j54A 147 :ALCARYEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15097 # 2c71A.189.186 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 189 :KYMKEKGVQ 2c71A 662 :ELFTLKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15098 # 1l1sA.189.73 read from T0287.t2k.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l1sA 74 :NTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15099 # 1ko6A.189.160 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 189 :KYMKEKGVQ 1ko6A 837 :AVSRKQGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15100 # 1vbkA.189.248 read from T0287.t2k.many.frag # found chain 1vbkA in template set T0287 189 :KYMKEKGVQ 1vbkA 249 :KLIRDFGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15101 # 1n69A.189.70 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 189 :KYMKEKGVQ 1n69A 69 :EICALVGFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15102 # 1orc.189.17 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1orc)Y26 T0287 189 :KYMKEKG 1orc 18 :KTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=15103 # 1ux5A.189.361 read from T0287.t2k.many.frag # found chain 1ux5A in template set T0287 189 :KYMKEKGVQ 1ux5A 1711 :SLMHTYGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=15104 # 1nuuA.189.224 read from T0287.t2k.many.frag # found chain 1nuuA in template set T0287 189 :KYMKEKGVQ 1nuuA 225 :TYIKDHGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15105 # 2d1pB.189.80 read from T0287.t2k.many.frag # found chain 2d1pB in template set T0287 189 :KYMKEKGVQ 2d1pB 81 :ASLRERGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15106 # 1e5kA.189.158 read from T0287.t2k.many.frag # found chain 1e5kA in training set T0287 189 :KYMKEKGVQ 1e5kA 159 :VFMRLAGGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15107 # 1l3lA.189.192 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)Q197 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l3lA 193 :EIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=15108 # 1c1yB.189.29 read from T0287.t2k.many.frag # found chain 1c1yB in template set T0287 189 :KYMKEKGVQ 1c1yB 84 :KALKVRGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15109 # 2cvbA.189.88 read from T0287.t2k.many.frag # found chain 2cvbA in template set T0287 189 :KYMKEKGVQ 2cvbA 89 :AFAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15110 # 1j2rA.190.125 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 190 :YMKEKGVQN 1j2rA 126 :QLRRRGIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15111 # 1oz2A.190.230 read from T0287.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)N198 (1oz2A)A435 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1oz2A 427 :YLEETGAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=15112 # 1jubA.190.291 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 190 :YMKEKGVQN 1jubA 292 :IMNQKGYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15113 # 1ywfA.190.275 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 190 :YMKEKGVQN 1ywfA 256 :YLRDAGISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15114 # 1i0dA.190.301 read from T0287.t2k.many.frag # found chain 1i0dA in training set T0287 190 :YMKEKGVQN 1i0dA 335 :FLREKGVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15115 # 1mtyG.190.151 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 190 :YMKEKGVQN 1mtyG 155 :LRKQRGVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15116 # 1o2dA.190.318 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)Q197 (1o2dA)Y314 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1o2dA 307 :FLKELGL T0287 198 :N 1o2dA 315 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=15118 # 1pyaB.190.210 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 190 :YMKEKGVQN 1pyaB 293 :WLEKMGYKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15119 # 1vbkA.190.249 read from T0287.t2k.many.frag # found chain 1vbkA in template set T0287 190 :YMKEKGVQN 1vbkA 250 :LIRDFGVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15120 # 1t0fC.190.35 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 190 :YMKEKGVQN 1t0fC 537 :RLKGKGVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15121 # 2nacA.190.169 read from T0287.t2k.many.frag # found chain 2nacA in training set T0287 190 :YMKEKGVQN 2nacA 170 :EWARKGGWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15122 # 1onrA.190.116 read from T0287.t2k.many.frag # found chain 1onrA in template set T0287 190 :YMKEKGVQN 1onrA 118 :LYNDAGISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15123 # 1l1sA.190.74 read from T0287.t2k.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1l1sA 75 :TLRASGM T0287 198 :N 1l1sA 83 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=15125 # 1zsqA.190.144 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 190 :YMKEK 1zsqA 214 :EYRRQ T0287 198 :N 1zsqA 222 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=15127 # 1qouA.190.154 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)V196 (1qouA)L160 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q197 (1qouA)G161 because S (epsilon) conformation "forbidden" or filtered. T0287 190 :YMKEKG 1qouA 154 :FTQENE T0287 198 :N 1qouA 162 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15129 # 1ko6A.190.161 read from T0287.t2k.many.frag # found chain 1ko6A in template set Warning: unaligning (T0287)N198 (1ko6A)F846 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1ko6A 838 :VSRKQGAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15130 # 1l5aA.190.315 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 190 :YMKEKGVQN 1l5aA 316 :IEQDQGLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15131 # 1u4bA.190.517 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 190 :YMKEKGVQN 1u4bA 814 :RLKEERLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15132 # 2c71A.190.187 read from T0287.t2k.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)Q197 (2c71A)P670 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 2c71A 663 :LFTLKGV T0287 198 :N 2c71A 671 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=15134 # 1lxjA.190.65 read from T0287.t2k.many.frag # found chain 1lxjA in training set T0287 190 :YMKEKGVQN 1lxjA 66 :YGHEKGYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15135 # 2cvbA.190.89 read from T0287.t2k.many.frag # found chain 2cvbA in template set T0287 190 :YMKEKGVQN 2cvbA 90 :FAEEHGIFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15136 # 1i12A.190.142 read from T0287.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0287)N198 (1i12A)N150 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1i12A 142 :FYEKCGFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=15137 # 1c1yB.190.30 read from T0287.t2k.many.frag # found chain 1c1yB in template set T0287 190 :YMKEKGVQN 1c1yB 85 :ALKVRGLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15138 # 1j54A.190.147 read from T0287.t2k.many.frag # found chain 1j54A in training set T0287 190 :YMKEKGVQN 1j54A 148 :LCARYEIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15139 # 1n93X.190.364 read from T0287.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1n93X 360 :IMKMIGVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=15140 # 1ux5A.190.362 read from T0287.t2k.many.frag # found chain 1ux5A in template set T0287 190 :YMKEKGVQN 1ux5A 1712 :LMHTYGEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15141 # 1nuuA.190.225 read from T0287.t2k.many.frag # found chain 1nuuA in template set T0287 190 :YMKEKGVQN 1nuuA 226 :YIKDHGLYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15142 # 1y42X.190.148 read from T0287.t2k.many.frag # found chain 1y42X in template set Warning: unaligning (T0287)K194 (1y42X)R184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N198 (1y42X)A188 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKE 1y42X 180 :QMRA T0287 195 :GVQ 1y42X 185 :GYE Number of specific fragments extracted= 2 number of extra gaps= 2 total=15144 # 2d1pB.190.81 read from T0287.t2k.many.frag # found chain 2d1pB in template set T0287 190 :YMKEKGVQN 2d1pB 82 :SLRERGLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15145 # 1f86A.190.68 read from T0287.t2k.many.frag # found chain 1f86A in training set Warning: unaligning (T0287)N198 (1f86A)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1f86A 78 :YWKALGIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=15146 # 1mtyG.191.152 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 191 :MKEKGVQNA 1mtyG 156 :RKQRGVRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15147 # 1t0fC.191.36 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 191 :MKEKGVQNA 1t0fC 538 :LKGKGVIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15148 # 1jubA.191.292 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 191 :MKEKGVQNA 1jubA 293 :MNQKGYQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15149 # 1j2rA.191.126 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 191 :MKEKGVQNA 1j2rA 127 :LRRRGIDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15150 # 1vbkA.191.250 read from T0287.t2k.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1vbkA 251 :IRDFGVK T0287 199 :A 1vbkA 259 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15152 # 1onrA.191.117 read from T0287.t2k.many.frag # found chain 1onrA in template set T0287 191 :MKEKGVQNA 1onrA 119 :YNDAGISND Number of specific fragments extracted= 1 number of extra gaps= 0 total=15153 # 1oz2A.191.231 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 191 :MKEKGVQNA 1oz2A 428 :LEETGASAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15154 # 1i0dA.191.302 read from T0287.t2k.many.frag # found chain 1i0dA in training set Warning: unaligning (T0287)Q197 (1i0dA)P342 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1i0dA 336 :LREKGV T0287 198 :NA 1i0dA 343 :QE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15156 # 1ko6A.191.162 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 191 :MKEKGVQNA 1ko6A 839 :SRKQGAQFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15157 # 1sp3A.191.375 read from T0287.t2k.many.frag # found chain 1sp3A in template set T0287 191 :MKEKGVQNA 1sp3A 376 :MLEKGIKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15158 # 1zsqA.191.145 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 Warning: unaligning (T0287)N198 (1zsqA)N222 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEK 1zsqA 215 :YRRQ T0287 199 :A 1zsqA 223 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=15160 # 1l1sA.191.75 read from T0287.t2k.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1l1sA 76 :LRASGM T0287 198 :NA 1l1sA 83 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15162 # 2cvbA.191.90 read from T0287.t2k.many.frag # found chain 2cvbA in template set Warning: unaligning (T0287)N198 (2cvbA)F98 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 2cvbA 91 :AEEHGIF T0287 199 :A 2cvbA 99 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=15164 # 2nacA.191.170 read from T0287.t2k.many.frag # found chain 2nacA in training set T0287 191 :MKEKGVQNA 2nacA 171 :WARKGGWNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15165 # 1n93X.191.365 read from T0287.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)A199 (1n93X)L369 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1n93X 361 :MKMIGVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=15166 # 1c1yB.191.31 read from T0287.t2k.many.frag # found chain 1c1yB in template set Warning: unaligning (T0287)K194 (1c1yB)R89 because G (3-10) conformation "forbidden" or filtered. T0287 191 :MKE 1c1yB 86 :LKV T0287 195 :GVQNA 1c1yB 90 :GLQPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15168 # 1o2dA.191.319 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 191 :MKEKGVQNA 1o2dA 308 :LKELGLYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15169 # 1i12A.191.143 read from T0287.t2k.many.frag # found chain 1i12A in training set T0287 191 :MKEKGVQNA 1i12A 143 :YEKCGFSNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15170 # 1ywfA.191.276 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 191 :MKEKGVQNA 1ywfA 257 :LRDAGISQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15171 # 1lxjA.191.66 read from T0287.t2k.many.frag # found chain 1lxjA in training set Warning: unaligning (T0287)N198 (1lxjA)R74 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1lxjA 67 :GHEKGYV T0287 199 :A 1lxjA 75 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15173 # 1u4bA.191.518 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 191 :MKEKGVQNA 1u4bA 815 :LKEERLQAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15174 # 1pyaB.191.211 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 191 :MKEKGVQNA 1pyaB 294 :LEKMGYKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15175 # 1jr2A.191.175 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 191 :MKEKGVQNA 1jr2A 155 :LKDKGIAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=15176 # 1s3rA.191.283 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 191 :MKEKGVQNA 1s3rA 281 :LINRGVNSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15177 # 2c71A.191.188 read from T0287.t2k.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)A199 (2c71A)D672 because D (zeta) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 2c71A 664 :FTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15178 # 1y42X.191.149 read from T0287.t2k.many.frag # found chain 1y42X in template set Warning: unaligning (T0287)K194 (1y42X)R184 because G (3-10) conformation "forbidden" or filtered. T0287 191 :MKE 1y42X 181 :MRA T0287 195 :GVQNA 1y42X 185 :GYEAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15180 # 1nofA.191.119 read from T0287.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0287)Q197 (1nofA)P156 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1nofA 150 :MQTNGA T0287 198 :NA 1nofA 157 :LY Number of specific fragments extracted= 2 number of extra gaps= 1 total=15182 # 1qddA.191.65 read from T0287.t2k.many.frag # found chain 1qddA in training set T0287 191 :MKEKGVQNA 1qddA 66 :IKESGTDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15183 # 2igd.191.38 read from T0287.t2k.many.frag # found chain 2igd in training set Warning: unaligning (T0287)N198 (2igd)G46 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 2igd 39 :ANDNGVD T0287 199 :A 2igd 47 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15185 # 1nuuA.191.226 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1nuuA 227 :IKDHGL T0287 198 :NA 1nuuA 234 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15187 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0287.t04.many.frag with CODEWEIGHT bystroff filtering # T0287 read from T0287.t04.many.frag # 1e9rA.1.164 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)M1 (1e9rA)G235 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1e9rA 236 :TPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15188 # 1wu7A.1.175 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)M1 (1wu7A)T176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N4 (1wu7A)D179 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :SN 1wu7A 177 :SS T0287 5 :MRKLF 1wu7A 180 :PFSVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=15190 # 1xsvA.1.25 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 1 :MSNNMRKLF 1xsvA 23 :LTNKQRNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15191 # 1zpyA.1.12 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 1 :MSN 1zpyA 13 :LSD T0287 6 :RKLF 1zpyA 18 :RDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=15193 # 1efyA.1.3 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 1 :MSNNMRKLF 1efyA 665 :LAKPIQDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15194 # 1u61A.1.37 read from T0287.t04.many.frag # found chain 1u61A in template set Warning: unaligning (T0287)M1 (1u61A)R35 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1u61A 36 :PNQLHRLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=15195 # 2b06A.1.120 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 1 :MSNNMRKLF 2b06A 121 :LAYDMLPLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15196 # 2czsA.1.12 read from T0287.t04.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)M5 (2czsA)H39 because G (3-10) conformation "forbidden" or filtered. T0287 1 :MSNN 2czsA 35 :LDTN T0287 6 :RKLF 2czsA 40 :KRFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=15198 # 1z7xW.1.211 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 1 :MSNNMRKLF 1z7xW 211 :TSDNCRDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15199 # 1v96A.1.17 read from T0287.t04.many.frag # found chain 1v96A in template set T0287 1 :MSNNMRKLF 1v96A 18 :HSQNMKRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15200 # 1p0yA.1.306 read from T0287.t04.many.frag # found chain 1p0yA in template set T0287 1 :MSNNMRKLF 1p0yA 351 :LPPGLLPYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15201 # 1qg8A.1.11 read from T0287.t04.many.frag # found chain 1qg8A in training set T0287 1 :MSNNMRKLF 1qg8A 13 :KSDYVAKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15202 # 1j93A.1.165 read from T0287.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N3 (1j93A)K167 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 1 :MS 1j93A 165 :SS T0287 4 :N 1j93A 168 :N T0287 6 :RKLF 1j93A 170 :TKIK Number of specific fragments extracted= 3 number of extra gaps= 2 total=15205 # 2f22A.1.32 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)N4 (2f22A)T35 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :MSN 2f22A 32 :ELG T0287 5 :MRKLF 2f22A 36 :LRKLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=15207 # 1yvrA.1.143 read from T0287.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)S2 (1yvrA)G145 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :M 1yvrA 144 :W T0287 3 :NNMRKLF 1yvrA 146 :RALRKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=15209 # 1ah7.1.190 read from T0287.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 1ah7 191 :V T0287 3 :NNMRKLF 1ah7 193 :DNTKDWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=15211 # 1x91A.1.29 read from T0287.t04.many.frag # found chain 1x91A in training set Warning: unaligning (T0287)M1 (1x91A)A26 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1x91A 27 :SANLQALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15212 # 2b0tA.1.59 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 1 :MSNNMRKLF 2b0tA 60 :VGNALAELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15213 # 1pu6A.1.60 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 1pu6A 61 :L T0287 3 :NNMRKLF 1pu6A 63 :NDDEINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15215 # 1ua4A.1.237 read from T0287.t04.many.frag # found chain 1ua4A in template set T0287 1 :MSNNMRKLF 1ua4A 238 :TKENYKEPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15216 # 1yd0A.1.0 read from T0287.t04.many.frag # found chain 1yd0A in training set T0287 1 :MSNNMRKLF 1yd0A 1 :MKEKIRKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15217 # 1qhlA.1.166 read from T0287.t04.many.frag # found chain 1qhlA in template set T0287 1 :MSNNMRKLF 1qhlA 167 :QFNSITDYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15218 # 1jfzA.1.0 read from T0287.t04.many.frag # found chain 1jfzA in template set Warning: unaligning (T0287)S2 (1jfzA)M1 because S (epsilon) conformation "forbidden" or filtered. T0287 1 :M 1jfzA 0 :G T0287 3 :NNMRKLF 1jfzA 2 :KMLEQLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15220 # 1ldjA.1.298 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 T0287 1 :MSNNMRKL 1ldjA 315 :KNEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15221 # 2bg5A.1.276 read from T0287.t04.many.frag # found chain 2bg5A in template set T0287 1 :MSNNMRKLF 2bg5A 526 :SATSIPEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15222 # 1utcA.1.329 read from T0287.t04.many.frag # found chain 1utcA in template set T0287 1 :MSNNMRKLF 1utcA 330 :EEENIIPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15223 # 1qgiA.1.181 read from T0287.t04.many.frag # found chain 1qgiA in training set T0287 1 :MSNNMRKLF 1qgiA 182 :GSDTLQGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15224 # 1fm0D.1.23 read from T0287.t04.many.frag # found chain 1fm0D in training set Warning: unaligning (T0287)M1 (1fm0D)D24 because G (3-10) conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1fm0D 25 :FPTVEALR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15225 # 2b6cA.1.120 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)L119 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLF 2b6cA 120 :TELPTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15226 # 1m5wA.1.111 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 1 :MSNNMRKLF 1m5wA 112 :QRDKMRDAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15227 # 1wu7A.2.176 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 2 :SNNMRKLFS 1wu7A 177 :SSDPFSVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15228 # 1xsvA.2.26 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 2 :SNNMRKLFS 1xsvA 24 :TNKQRNYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15229 # 1efyA.2.4 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 2 :SNNMRKLFS 1efyA 666 :AKPIQDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15230 # 1e9rA.2.165 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 2 :SNNMRKLFS 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15231 # 2czsA.2.13 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 2 :SNNMRKLFS 2czsA 36 :DTNHKRFYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15232 # 1zpyA.2.13 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 2 :SN 1zpyA 14 :SD T0287 6 :RKLFS 1zpyA 18 :RDMHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15234 # 1ah7.2.191 read from T0287.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 1ah7 193 :DNTKDWFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=15235 # 2f22A.2.33 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 2 :SNNMRKLFS 2f22A 33 :LGTLRKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15236 # 1qg8A.2.12 read from T0287.t04.many.frag # found chain 1qg8A in training set T0287 2 :SNNMRKLFS 1qg8A 14 :SDYVAKSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15237 # 2b06A.2.121 read from T0287.t04.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)S2 (2b06A)A122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N3 (2b06A)Y123 because P (beta_P) conformation "forbidden" or filtered. T0287 4 :NMRKLFS 2b06A 124 :DMLPLME Number of specific fragments extracted= 1 number of extra gaps= 1 total=15238 # 1j93A.2.166 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 2 :SNNMRKLFS 1j93A 166 :SKNFTKIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15239 # 1z7xW.2.212 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 2 :SNNMRKLFS 1z7xW 212 :SDNCRDLCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15240 # 1ldjA.2.299 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 2 :SNNMRKL 1ldjA 316 :NEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15241 # 1yvrA.2.144 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 2 :SNNMRKLFS 1yvrA 145 :GRALRKAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15242 # 1ua4A.2.238 read from T0287.t04.many.frag # found chain 1ua4A in template set T0287 2 :SNNMRKLFS 1ua4A 239 :KENYKEPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15243 # 1m5wA.2.112 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 2 :SNNMRKLFS 1m5wA 113 :RDKMRDACK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15244 # 1wb9A.2.429 read from T0287.t04.many.frag # found chain 1wb9A in template set T0287 2 :SNNMRKLFS 1wb9A 430 :NEELDEWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15245 # 1u61A.2.38 read from T0287.t04.many.frag # found chain 1u61A in template set T0287 2 :SNNMRKLFS 1u61A 36 :PNQLHRLGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15246 # 1dozA.2.17 read from T0287.t04.many.frag # found chain 1dozA in training set T0287 2 :SNNMRKLFS 1dozA 19 :EEDIERYYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15247 # 2b6cA.2.121 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLFS 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15248 # 1v96A.2.18 read from T0287.t04.many.frag # found chain 1v96A in template set T0287 2 :SNNMRKLFS 1v96A 19 :SQNMKRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15249 # 1yd0A.2.1 read from T0287.t04.many.frag # found chain 1yd0A in training set T0287 2 :SNNMRKLFS 1yd0A 2 :KEKIRKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15250 # 1xfiA.2.38 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 2 :SNNMRKLFS 1xfiA 39 :TPNEISWIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15251 # 1pu6A.2.61 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N4 (1pu6A)D64 because E (beta_S) conformation "forbidden" or filtered. T0287 3 :N 1pu6A 63 :N T0287 5 :MRKLFS 1pu6A 65 :DEINLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=15253 # 3thiA.2.120 read from T0287.t04.many.frag # found chain 3thiA in template set T0287 2 :SNNMRKLFS 3thiA 129 :VDNIYELYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15254 # 1p0yA.2.307 read from T0287.t04.many.frag # found chain 1p0yA in template set T0287 2 :SNNMRKLFS 1p0yA 352 :PPGLLPYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15255 # 1z0wA.2.174 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SN 1z0wA 589 :VS T0287 5 :MRKLFS 1z0wA 592 :INEVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15257 # 2ahrA.2.154 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 2 :SNNMRKLFS 2ahrA 152 :EKDFDTFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15258 # 1hw1A.2.120 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 2 :SNNMRKLFS 1hw1A 121 :PDKAQEVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15259 # 2b0tA.2.60 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 2 :SNNMRKLFS 2b0tA 61 :GNALAELGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15260 # 1wu7A.3.177 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)N3 (1wu7A)S178 because P (beta_P) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 1wu7A 179 :DPFSVFSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15261 # 1efyA.3.5 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 3 :NNMRKLFSM 1efyA 667 :KPIQDLIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15262 # 1xsvA.3.27 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 3 :NNMRKLFSM 1xsvA 25 :NKQRNYLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15263 # 1zpyA.3.14 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 3 :N 1zpyA 15 :D T0287 6 :RKLFSM 1zpyA 18 :RDMHRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15265 # 1ah7.3.192 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 3 :NNMRKLFSM 1ah7 193 :DNTKDWFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15266 # 2czsA.3.14 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 3 :NNMRKLFSM 2czsA 37 :TNHKRFYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15267 # 1e9rA.3.166 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 3 :NNMRKLFSM 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15268 # 2f22A.3.34 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 3 :NNMRKLFSM 2f22A 34 :GTLRKLFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15269 # 2b6cA.3.122 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)N4 (2b6cA)E121 because G (3-10) conformation "forbidden" or filtered. T0287 3 :N 2b6cA 120 :T T0287 5 :MRKLFSM 2b6cA 122 :LPTIFAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15271 # 1m5wA.3.113 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 3 :NNMRKLFSM 1m5wA 114 :DKMRDACKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15272 # 1ldjA.3.300 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 3 :NNMRKL 1ldjA 317 :EDLGRM T0287 11 :M 1ldjA 325 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15274 # 1dozA.3.18 read from T0287.t04.many.frag # found chain 1dozA in training set T0287 3 :NNMRKLFSM 1dozA 20 :EDIERYYTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15275 # 2b06A.3.122 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 3 :NNMRKLFSM 2b06A 123 :YDMLPLMEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15276 # 1wb9A.3.430 read from T0287.t04.many.frag # found chain 1wb9A in template set T0287 3 :NNMRKLFSM 1wb9A 431 :EELDEWRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15277 # 1z7xW.3.213 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 3 :NNMRKLFSM 1z7xW 213 :DNCRDLCGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15278 # 1j93A.3.167 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 3 :NNMRKLFSM 1j93A 167 :KNFTKIKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15279 # 1qg8A.3.13 read from T0287.t04.many.frag # found chain 1qg8A in training set T0287 3 :NNMRKLFSM 1qg8A 15 :DYVAKSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15280 # 3thiA.3.121 read from T0287.t04.many.frag # found chain 3thiA in template set T0287 3 :NNMRKLFSM 3thiA 130 :DNIYELYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15281 # 1ee4A.3.296 read from T0287.t04.many.frag # found chain 1ee4A in template set Warning: unaligning (T0287)N3 (1ee4A)N383 because L (left) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 1ee4A 384 :LIPPLVKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15282 # 1yvrA.3.145 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 3 :NNMRKLFSM 1yvrA 146 :RALRKAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15283 # 1ua4A.3.239 read from T0287.t04.many.frag # found chain 1ua4A in template set T0287 3 :NNMRKLFSM 1ua4A 240 :ENYKEPFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15284 # 1xfiA.3.39 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 3 :NNMRKLFSM 1xfiA 40 :PNEISWINV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15285 # 1b25A.3.502 read from T0287.t04.many.frag # found chain 1b25A in template set T0287 3 :NNMRKLFSM 1b25A 503 :DYYPKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15286 # 1u61A.3.39 read from T0287.t04.many.frag # found chain 1u61A in template set T0287 3 :NNMRKLFSM 1u61A 37 :NQLHRLGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15287 # 1z0wA.3.175 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 3 :NNMRKLFSM 1z0wA 590 :SRINEVLEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15288 # 1hw1A.3.121 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 3 :NNMRKLFSM 1hw1A 122 :DKAQEVLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15289 # 2ahrA.3.155 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 3 :NNMRKLFSM 2ahrA 153 :KDFDTFTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15290 # 2b0tA.3.61 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 3 :NNMRKLFSM 2b0tA 62 :NALAELGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15291 # 1yqyA.3.29 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 3 :NNMRKLFSM 1yqyA 287 :EEGRGLLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15292 # 1yavA.3.102 read from T0287.t04.many.frag # found chain 1yavA in template set T0287 3 :NNMRKLFSM 1yavA 103 :DPIMKGFGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15293 # 1wu7A.4.178 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)N4 (1wu7A)D179 because P (beta_P) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1wu7A 180 :PFSVFSII Number of specific fragments extracted= 1 number of extra gaps= 1 total=15294 # 1ah7.4.193 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 4 :NMRKLFSMI 1ah7 194 :NTKDWFVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15295 # 1efyA.4.6 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 4 :NMRKLFSMI 1efyA 668 :PIQDLIKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15296 # 1xsvA.4.28 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 4 :NMRKLFSMI 1xsvA 26 :KQRNYLELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15297 # 1zpyA.4.15 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMI 1zpyA 18 :RDMHRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15298 # 2czsA.4.15 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 4 :NMRKLFSMI 2czsA 38 :NHKRFYDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15299 # 1m5wA.4.114 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 4 :NMRKLFSMI 1m5wA 115 :KMRDACKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15300 # 1e9rA.4.167 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 4 :NMRKLFSMI 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15301 # 1ldjA.4.301 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 4 :NMRKL 1ldjA 318 :DLGRM T0287 11 :MI 1ldjA 325 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=15303 # 2b6cA.4.123 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)N4 (2b6cA)E121 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 2b6cA 122 :LPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15304 # 1dozA.4.19 read from T0287.t04.many.frag # found chain 1dozA in training set T0287 4 :NMRKLFSMI 1dozA 21 :DIERYYTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15305 # 2f22A.4.35 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 4 :NMRKLFSMI 2f22A 35 :TLRKLFIHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15306 # 2b06A.4.123 read from T0287.t04.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 2b06A 125 :MLPLMEMM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15307 # 1yvrA.4.146 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 4 :NMRKLFSMI 1yvrA 147 :ALRKAVSDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15308 # 1xfiA.4.40 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 4 :NMRKLFSMI 1xfiA 41 :NEISWINVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15309 # 1wb9A.4.431 read from T0287.t04.many.frag # found chain 1wb9A in template set T0287 4 :NMRKLFSMI 1wb9A 432 :ELDEWRALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15310 # 1qg8A.4.14 read from T0287.t04.many.frag # found chain 1qg8A in training set T0287 4 :NMRKLFSMI 1qg8A 16 :YVAKSISSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15311 # 1z0wA.4.176 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 4 :NMRKLFSMI 1z0wA 591 :RINEVLEHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15312 # 3thiA.4.122 read from T0287.t04.many.frag # found chain 3thiA in template set T0287 4 :NMRKLFSMI 3thiA 131 :NIYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15313 # 1yavA.4.103 read from T0287.t04.many.frag # found chain 1yavA in template set Warning: unaligning (T0287)I12 (1yavA)V112 because G (3-10) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 1yavA 104 :PIMKGFGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15314 # 1hw1A.4.122 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 4 :NMRKLFSMI 1hw1A 123 :KAQEVLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15315 # 1yqyA.4.30 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 4 :NMRKLFSMI 1yqyA 288 :EGRGLLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15316 # 1ua4A.4.240 read from T0287.t04.many.frag # found chain 1ua4A in template set T0287 4 :NMRKLFSMI 1ua4A 241 :NYKEPFEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15317 # 1v74B.4.4 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 4 :NMRKLFSMI 1v74B 5 :AMIDLAKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15318 # 1sd4A.4.10 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 4 :NMRKLFSMI 1sd4A 11 :AEWDVMNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=15319 # 1u7nA.4.191 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 4 :NMRKLFSMI 1u7nA 189 :LTKKAFELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15320 # 1z7xW.4.214 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 4 :NMRKLFSMI 1z7xW 214 :NCRDLCGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15321 # 1n1bA.4.207 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 4 :NMRKLFSMI 1n1bA 257 :EARWFIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15322 # 1b25A.4.503 read from T0287.t04.many.frag # found chain 1b25A in template set T0287 4 :NMRKLFSMI 1b25A 504 :YYPKLLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15323 # 1j93A.4.168 read from T0287.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 4 :N 1j93A 168 :N T0287 6 :RKLFSMI 1j93A 170 :TKIKRLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15325 # 1wu7A.5.179 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 5 :MRKLFSMIA 1wu7A 180 :PFSVFSIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=15326 # 1ah7.5.194 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 5 :MRKLFSMIA 1ah7 195 :TKDWFVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15327 # 1efyA.5.7 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 5 :MRKLFSMIA 1efyA 669 :IQDLIKMIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15328 # 1xsvA.5.29 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 5 :MRKLFSMIA 1xsvA 27 :QRNYLELFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15329 # 2czsA.5.16 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 5 :MRKLFSMIA 2czsA 39 :HKRFYDAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15330 # 1zpyA.5.16 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMIA 1zpyA 18 :RDMHRAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=15331 # 1ldjA.5.302 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 5 :MRKL 1ldjA 319 :LGRM T0287 11 :MIA 1ldjA 325 :LVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15333 # 1dozA.5.20 read from T0287.t04.many.frag # found chain 1dozA in training set T0287 5 :MRKLFSMIA 1dozA 22 :IERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15334 # 2b6cA.5.124 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 5 :MRKLFSMIA 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15335 # 1m5wA.5.115 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 5 :MRKLFSMIA 1m5wA 116 :MRDACKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15336 # 2b06A.5.124 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 5 :MRKLFSMIA 2b06A 125 :MLPLMEMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=15337 # 1wb9A.5.432 read from T0287.t04.many.frag # found chain 1wb9A in template set T0287 5 :MRKLFSMIA 1wb9A 433 :LDEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15338 # 3htsB.5.15 read from T0287.t04.many.frag # found chain 3htsB in training set T0287 5 :MRKLFSMIA 3htsB 198 :VNKLWSMVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15339 # 1e9rA.5.168 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 5 :MRKLFSMIA 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15340 # 1u7nA.5.192 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 5 :MRKLFSMIA 1u7nA 190 :TKKAFELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15341 # 1xfiA.5.41 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 5 :MRKLFSMIA 1xfiA 42 :EISWINVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15342 # 1n1bA.5.208 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 5 :MRKLFSMIA 1n1bA 258 :ARWFIDAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15343 # 1yavA.5.104 read from T0287.t04.many.frag # found chain 1yavA in template set T0287 5 :MRKLFSMIA 1yavA 105 :IMKGFGMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15344 # 3thiA.5.123 read from T0287.t04.many.frag # found chain 3thiA in template set T0287 5 :MRKLFSMIA 3thiA 132 :IYELYKKIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15345 # 1v74B.5.5 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 5 :MRKLFSMIA 1v74B 6 :MIDLAKLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15346 # 1hw1A.5.123 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)A13 (1hw1A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1hw1A 124 :AQEVLATA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15347 # 1q08A.5.21 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 5 :MRKLFSMIA 1q08A 64 :IRELLSIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15348 # 1b25A.5.504 read from T0287.t04.many.frag # found chain 1b25A in template set T0287 5 :MRKLFSMIA 1b25A 505 :YPKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15349 # 2f22A.5.36 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 5 :MRKLFSMIA 2f22A 36 :LRKLFIHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15350 # 1n5uA.5.160 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 5 :MRKLFSMIA 1n5uA 161 :YKAAFTECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15351 # 1sd4A.5.11 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 5 :MRKLFSMIA 1sd4A 12 :EWDVMNIIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15352 # 1z0wA.5.177 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSM 1z0wA 592 :INEVLEH T0287 13 :A 1z0wA 600 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15354 # 1yvrA.5.147 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 5 :MRKLFSMIA 1yvrA 148 :LRKAVSDWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15355 # 1z7xW.5.215 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 5 :MRKLFSMIA 1z7xW 215 :CRDLCGIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15356 # 2czlA.5.125 read from T0287.t04.many.frag # found chain 2czlA in template set T0287 5 :MRKLFSMIA 2czlA 126 :YDRILPMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15357 # 1wu7A.6.180 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 6 :RKLFSMIAD 1wu7A 181 :FSVFSIIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15358 # 1ah7.6.195 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 6 :RKLFSMIAD 1ah7 196 :KDWFVKAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15359 # 1efyA.6.8 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 6 :RKLFSMIAD 1efyA 670 :QDLIKMIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15360 # 1xsvA.6.30 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 6 :RKLFSMIAD 1xsvA 28 :RNYLELFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15361 # 2czsA.6.17 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 6 :RKLFSMIAD 2czsA 40 :KRFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15362 # 1dozA.6.21 read from T0287.t04.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1dozA 23 :ERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15363 # 1ldjA.6.303 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 6 :RKL 1ldjA 320 :GRM T0287 11 :MIAD 1ldjA 325 :LVSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15365 # 1zpyA.6.17 read from T0287.t04.many.frag # found chain 1zpyA in template set T0287 6 :RKLFSMIAD 1zpyA 18 :RDMHRAIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15366 # 2b6cA.6.125 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)D14 (2b6cA)G131 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 2b6cA 123 :PTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=15367 # 1m5wA.6.116 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 6 :RKLFSMIAD 1m5wA 117 :RDACKRLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15368 # 1n5uA.6.161 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 6 :RKLFSMIAD 1n5uA 162 :KAAFTECCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15369 # 1v74B.6.6 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 6 :RKLFSMIAD 1v74B 7 :IDLAKLFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15370 # 1yavA.6.105 read from T0287.t04.many.frag # found chain 1yavA in template set T0287 6 :RKLFSMIAD 1yavA 106 :MKGFGMVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15371 # 1u7nA.6.193 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 6 :RKLFSMIAD 1u7nA 191 :KKAFELLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15372 # 1n1bA.6.209 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 6 :RKLFSMIAD 1n1bA 259 :RWFIDAYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15373 # 3htsB.6.16 read from T0287.t04.many.frag # found chain 3htsB in training set T0287 6 :RKLFSMIAD 3htsB 199 :NKLWSMVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=15374 # 2b06A.6.125 read from T0287.t04.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)D14 (2b06A)A134 because P (beta_P) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 2b06A 126 :LPLMEMME Number of specific fragments extracted= 1 number of extra gaps= 1 total=15375 # 1wb9A.6.433 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 T0287 6 :RKLFSMIA 1wb9A 434 :DEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=15376 # 1hw1A.6.124 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1hw1A 125 :QEVLATAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=15377 # 1xfiA.6.42 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 6 :RKLFSMIAD 1xfiA 43 :ISWINVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15378 # 1skvA.6.7 read from T0287.t04.many.frag # found chain 1skvA in template set T0287 6 :RKLFSMIAD 1skvA 8 :KELFEMLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15379 # 1z0wA.6.178 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 6 :RKLFSMIAD 1z0wA 593 :NEVLEHVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15380 # 1q08A.6.22 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 6 :RKLFSMIAD 1q08A 65 :RELLSIRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=15381 # 1sd4A.6.12 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 6 :RKLFSMIAD 1sd4A 13 :WDVMNIIWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15382 # 1b43A.6.247 read from T0287.t04.many.frag # found chain 1b43A in template set T0287 6 :RKLFSMIAD 1b43A 247 :KKALEIVRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15383 # 3thiA.6.124 read from T0287.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (3thiA)T141 because P (beta_P) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 3thiA 133 :YELYKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15384 # 1b25A.6.505 read from T0287.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0287)D14 (1b25A)G514 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1b25A 506 :PKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=15385 # 1yvrA.6.148 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 6 :RKLFSMIAD 1yvrA 149 :RKAVSDWYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15386 # 1f7lA.6.12 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 6 :RKLFSMIAD 1f7lA 13 :KRIASMAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15387 # 1elkA.6.37 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 6 :RKLFSMIAD 1elkA 34 :MEICDIINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15388 # 1ah7.7.196 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 7 :KLFSMIADS 1ah7 197 :DWFVKAAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15389 # 1wu7A.7.181 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 7 :KLFSMIADS 1wu7A 182 :SVFSIIDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15390 # 1efyA.7.9 read from T0287.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0287)A13 (1efyA)F677 because G (3-10) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1efyA 671 :DLIKMI T0287 14 :DS 1efyA 678 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=15392 # 2czsA.7.18 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 7 :KLFSMIADS 2czsA 41 :RFYDAFAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15393 # 1dozA.7.22 read from T0287.t04.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1dozA 24 :RYYTHIR T0287 15 :S 1dozA 32 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=15395 # 1u7nA.7.194 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 7 :KLFSMIADS 1u7nA 192 :KAFELLAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15396 # 1elkA.7.38 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 7 :KLFSMIADS 1elkA 35 :EICDIINET Number of specific fragments extracted= 1 number of extra gaps= 0 total=15397 # 1hw1A.7.125 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1hw1A 126 :EVLATAN T0287 15 :S 1hw1A 134 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15399 # 1n5uA.7.162 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 7 :KLFSMIADS 1n5uA 163 :AAFTECCQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15400 # 1ldjA.7.304 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 7 :KL 1ldjA 321 :RM T0287 11 :MIADS 1ldjA 325 :LVSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15402 # 1xsvA.7.31 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 7 :KLFSMIADS 1xsvA 29 :NYLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15403 # 2b06A.7.126 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 7 :KLFSMIADS 2b06A 127 :PLMEMMEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15404 # 1z0wA.7.179 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1z0wA 594 :EVLEHVL T0287 15 :S 1z0wA 602 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=15406 # 1q08A.7.23 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 7 :KLFSMIADS 1q08A 66 :ELLSIRIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15407 # 1b43A.7.248 read from T0287.t04.many.frag # found chain 1b43A in template set T0287 7 :KLFSMIADS 1b43A 248 :KALEIVRHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15408 # 3htsB.7.17 read from T0287.t04.many.frag # found chain 3htsB in training set T0287 7 :KLFSMIADS 3htsB 200 :KLWSMVNDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15409 # 1v74B.7.7 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 7 :KLFSMIADS 1v74B 8 :DLAKLFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15410 # 1n1bA.7.210 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 7 :KLFSMIADS 1n1bA 260 :WFIDAYARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15411 # 1qv9A.7.81 read from T0287.t04.many.frag # found chain 1qv9A in training set T0287 7 :KLFSMIADS 1qv9A 82 :KAREMLADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15412 # 1f7lA.7.13 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 7 :KLFSMIADS 1f7lA 14 :RIASMAGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15413 # 1m5wA.7.117 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 7 :KLFSMIADS 1m5wA 118 :DACKRLADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15414 # 1sd4A.7.13 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 7 :KLFSMIADS 1sd4A 14 :DVMNIIWDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15415 # 3thiA.7.125 read from T0287.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 7 :KLFSMI 3thiA 134 :ELYKKI T0287 14 :DS 3thiA 141 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15417 # 1zpyA.7.18 read from T0287.t04.many.frag # found chain 1zpyA in template set T0287 7 :KLFSMIADS 1zpyA 19 :DMHRAIISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15418 # 1skvA.7.8 read from T0287.t04.many.frag # found chain 1skvA in template set T0287 7 :KLFSMIADS 1skvA 9 :ELFEMLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=15419 # 2b6cA.7.126 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)D14 (2b6cA)G131 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 2b6cA 124 :TIFALFY T0287 15 :S 2b6cA 132 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=15421 # 1zv1A.7.14 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1zv1A 15 :KLLEKF T0287 14 :DS 1zv1A 22 :YP Number of specific fragments extracted= 2 number of extra gaps= 1 total=15423 # 1g8mA.7.153 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 7 :KLFSMIADS 1g8mA 154 :SVAKEMAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15424 # 1wb9A.7.434 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 7 :KLFSMIA 1wb9A 435 :EWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=15425 # 1h6kA.7.496 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 7 :KLFSMIADS 1h6kA 516 :EIFSILKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15426 # 1ah7.8.197 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 8 :LFSMIADSK 1ah7 198 :WFVKAAVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15427 # 1wu7A.8.182 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K16 (1wu7A)H191 because G (3-10) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1wu7A 183 :VFSIIDRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=15428 # 1elkA.8.39 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 8 :LFSMIADSK 1elkA 36 :ICDIINETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15429 # 1z0wA.8.180 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1z0wA 595 :VLEHVLED Number of specific fragments extracted= 1 number of extra gaps= 1 total=15430 # 1n5uA.8.163 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 8 :LFSMIADSK 1n5uA 164 :AFTECCQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15431 # 1u7nA.8.195 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 8 :LFSMIADSK 1u7nA 193 :AFELLAADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15432 # 1dozA.8.23 read from T0287.t04.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIA 1dozA 25 :YYTHIR T0287 16 :K 1dozA 33 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=15434 # 1f7lA.8.14 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 8 :LFSMIADSK 1f7lA 15 :IASMAGRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15435 # 1xsvA.8.32 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 8 :LFSMIADSK 1xsvA 30 :YLELFYLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=15436 # 1efyA.8.10 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 8 :LFSMIADSK 1efyA 672 :LIKMIFDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15437 # 1b43A.8.249 read from T0287.t04.many.frag # found chain 1b43A in template set T0287 8 :LFSMIADSK 1b43A 249 :ALEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15438 # 1q08A.8.24 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 8 :LFSMIADSK 1q08A 67 :LLSIRIDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15439 # 2b06A.8.127 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 8 :LFSMIADSK 2b06A 128 :LMEMMEAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15440 # 2czsA.8.19 read from T0287.t04.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)K16 (2czsA)A50 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 2czsA 42 :FYDAFAQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=15441 # 1ldjA.8.305 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 8 :L 1ldjA 322 :M T0287 11 :MIADSK 1ldjA 325 :LVSRIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15443 # 3htsB.8.18 read from T0287.t04.many.frag # found chain 3htsB in training set T0287 8 :LFSMIADSK 3htsB 201 :LWSMVNDKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15444 # 1t0qB.8.270 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)K16 (1t0qB)E279 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1t0qB 271 :LVKMALEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15445 # 1qv9A.8.82 read from T0287.t04.many.frag # found chain 1qv9A in training set T0287 8 :LFSMIADSK 1qv9A 83 :AREMLADSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15446 # 1zc6A.8.169 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 8 :LFSMIADSK 1zc6A 170 :LTQMALDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15447 # 1sd4A.8.14 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 8 :LFSMIADSK 1sd4A 15 :VMNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15448 # 1v74B.8.8 read from T0287.t04.many.frag # found chain 1v74B in template set Warning: unaligning (T0287)S15 (1v74B)S16 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1v74B 9 :LAKLFLA T0287 16 :K 1v74B 17 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=15450 # 1g8mA.8.154 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 8 :LFSMIADSK 1g8mA 155 :VAKEMAASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15451 # 1hw1A.8.126 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)S15 (1hw1A)V134 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1hw1A 127 :VLATANE T0287 16 :K 1hw1A 135 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=15453 # 1tn6A.8.174 read from T0287.t04.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMI 1tn6A 175 :LVEWL T0287 14 :DSK 1tn6A 181 :DPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15455 # 1otvA.8.192 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 8 :LFSMIADSK 1otvA 193 :LAKAYCDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15456 # 1ak0.8.92 read from T0287.t04.many.frag # found chain 1ak0 in training set T0287 8 :LFSMIADSK 1ak0 93 :YTQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15457 # 1hf8A.8.44 read from T0287.t04.many.frag # found chain 1hf8A in template set Warning: unaligning (T0287)D14 (1hf8A)E51 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIA 1hf8A 45 :LIQCTN T0287 15 :SK 1hf8A 52 :MN Number of specific fragments extracted= 2 number of extra gaps= 1 total=15459 # 1zv1A.8.15 read from T0287.t04.many.frag # found chain 1zv1A in template set T0287 8 :LFSMIADSK 1zv1A 16 :LLEKFRYPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15460 # 1n1bA.8.211 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 8 :LFSMIADSK 1n1bA 261 :FIDAYARRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15461 # 1ej0A.8.79 read from T0287.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0287)A13 (1ej0A)G114 because S (epsilon) conformation "forbidden" or filtered. T0287 8 :LFSMI 1ej0A 109 :LLERV T0287 14 :DSK 1ej0A 115 :DSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15463 # 1ah7.9.198 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 9 :FSMIADSKD 1ah7 199 :FVKAAVSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15464 # 1elkA.9.40 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 9 :FSMIADSKD 1elkA 37 :CDIINETEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15465 # 1n5uA.9.164 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 9 :FSMIADSKD 1n5uA 165 :FTECCQAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15466 # 1z0wA.9.181 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 9 :FSMIADSKD 1z0wA 596 :LEHVLEDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15467 # 1u7nA.9.196 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 9 :FSMIADSKD 1u7nA 194 :FELLAADET Number of specific fragments extracted= 1 number of extra gaps= 0 total=15468 # 1otvA.9.193 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 9 :FSMIADSKD 1otvA 194 :AKAYCDSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15469 # 1b43A.9.250 read from T0287.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 T0287 9 :FSMIADSK 1b43A 250 :LEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15470 # 1f7lA.9.15 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 9 :FSMIADSKD 1f7lA 16 :ASMAGRQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15471 # 1g8mA.9.155 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 9 :FSMIADSKD 1g8mA 156 :AKEMAASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15472 # 1t0qB.9.271 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)A13 (1t0qB)L276 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMI 1t0qB 272 :VKMA T0287 14 :DSK 1t0qB 277 :EKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=15474 # 1q08A.9.25 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 9 :FSMIADSKD 1q08A 68 :LSIRIDPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15475 # 1wu7A.9.183 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 9 :FSMIADSKD 1wu7A 184 :FSIIDRYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15476 # 1ldjA.9.306 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 11 :MIADSKD 1ldjA 325 :LVSRIQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=15477 # 2czsA.9.20 read from T0287.t04.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)K16 (2czsA)A50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (2czsA)G51 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIADS 2czsA 43 :YDAFAQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=15478 # 1zc6A.9.170 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1zc6A 171 :TQMALDGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15479 # 1hw1A.9.127 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIA 1hw1A 128 :LATAN T0287 15 :S 1hw1A 134 :V T0287 17 :D 1hw1A 136 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=15482 # 1qkrA.9.55 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 9 :FSMIADSKD 1qkrA 934 :SRLVRGGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15483 # 1n1bA.9.212 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 9 :FSMIADSKD 1n1bA 262 :IDAYARRPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15484 # 1tn6A.9.175 read from T0287.t04.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMI 1tn6A 176 :VEWL T0287 14 :DSKD 1tn6A 181 :DPSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15486 # 1dozA.9.24 read from T0287.t04.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIA 1dozA 26 :YTHIR T0287 15 :SKD 1dozA 32 :GRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15488 # 1v58A.9.145 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 9 :FSMIADSKD 1v58A 146 :AAAILASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15489 # 1sd4A.9.15 read from T0287.t04.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)D17 (1sd4A)S24 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1sd4A 16 :MNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15490 # 1xsvA.9.33 read from T0287.t04.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)K16 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1xsvA 31 :LELFYLE T0287 17 :D 1xsvA 39 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=15492 # 1qv9A.9.83 read from T0287.t04.many.frag # found chain 1qv9A in training set T0287 9 :FSMIADSKD 1qv9A 84 :REMLADSEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15493 # 2b06A.9.128 read from T0287.t04.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)D17 (2b06A)K137 because E (beta_S) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 2b06A 129 :MEMMEAPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=15494 # 1zv1A.9.16 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMI 1zv1A 17 :LEKF T0287 14 :DSKD 1zv1A 22 :YPWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15496 # 1ak0.9.93 read from T0287.t04.many.frag # found chain 1ak0 in training set T0287 9 :FSMIADSKD 1ak0 94 :TQRVSDSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15497 # 1xttA.9.14 read from T0287.t04.many.frag # found chain 1xttA in training set T0287 9 :FSMIADSKD 1xttA 15 :LTQLRDKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15498 # 1tu9A.9.12 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1tu9A 11 :YGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 1 total=15499 # 1ci4A.9.45 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1ci4A 46 :LGQFLVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15500 # 1n5uA.10.165 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 10 :SMIADSKDK 1n5uA 166 :TECCQAADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15501 # 1ah7.10.199 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 10 :SMIADSKDK 1ah7 200 :VKAAVSQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15502 # 1otvA.10.194 read from T0287.t04.many.frag # found chain 1otvA in template set Warning: unaligning (T0287)A13 (1otvA)C198 because N (gamma') conformation "forbidden" or filtered. T0287 10 :SMI 1otvA 195 :KAY T0287 14 :DSKDK 1otvA 199 :DSAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15504 # 1z0wA.10.182 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SMIADS 1z0wA 597 :EHVLED T0287 17 :DK 1z0wA 604 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15506 # 1elkA.10.41 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 10 :SMIADSKDK 1elkA 38 :DIINETEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15507 # 1v58A.10.146 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 10 :SMIADSKDK 1v58A 147 :AAILASKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15508 # 1n1bA.10.213 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 10 :SMIADSKDK 1n1bA 263 :DAYARRPDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15509 # 1qkrA.10.56 read from T0287.t04.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)A13 (1qkrA)R938 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1qkrA)G939 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMI 1qkrA 935 :RLV T0287 15 :SKDK 1qkrA 940 :GSGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=15511 # 1t0qB.10.272 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1t0qB 273 :KMALEKE T0287 18 :K 1t0qB 281 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=15513 # 1g8mA.10.156 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 10 :SMIADSKDK 1g8mA 157 :KEMAASKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15514 # 1hw1A.10.128 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIA 1hw1A 129 :ATAN T0287 15 :SKDK 1hw1A 134 :VADH Number of specific fragments extracted= 2 number of extra gaps= 1 total=15516 # 1f7lA.10.16 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 10 :SMIADSKDK 1f7lA 17 :SMAGRQKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15517 # 1ci4A.10.46 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1ci4A 47 :GQFLVLK T0287 18 :K 1ci4A 55 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=15519 # 1zc6A.10.171 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SMIADSK 1zc6A 172 :QMALDGR T0287 18 :K 1zc6A 180 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=15521 # 1zv1A.10.17 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 10 :SMI 1zv1A 18 :EKF T0287 14 :DSKDK 1zv1A 22 :YPWEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15523 # 1q08A.10.26 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 10 :SMIADSKDK 1q08A 69 :SIRIDPEHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15524 # 1u7nA.10.197 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 10 :SMIADSKDK 1u7nA 195 :ELLAADETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15525 # 1b43A.10.251 read from T0287.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1b43A)P259 T0287 10 :SMIADSK 1b43A 251 :EIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15526 # 1ldjA.10.307 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 Warning: unaligning (T0287)K16 (1ldjA)Q330 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADS 1ldjA 325 :LVSRI T0287 17 :DK 1ldjA 331 :DG Number of specific fragments extracted= 2 number of extra gaps= 2 total=15528 # 1tu9A.10.13 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1tu9A 12 :GRCCAST T0287 18 :K 1tu9A 20 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=15530 # 1wb9A.10.437 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)A13 (1wb9A)D441 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 10 :SMI 1wb9A 438 :ALA T0287 16 :KDK 1wb9A 444 :TDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=15532 # 1zybA.10.193 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 10 :SMIADSKDK 1zybA 182 :RCLDDTRLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15533 # 1ak0.10.94 read from T0287.t04.many.frag # found chain 1ak0 in training set T0287 10 :SMIADSKDK 1ak0 95 :QRVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15534 # 1aa7A.10.11 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 10 :SMIADSKDK 1aa7A 12 :LSIIPSGPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15535 # 1qv9A.10.84 read from T0287.t04.many.frag # found chain 1qv9A in training set T0287 10 :SMIADSKDK 1qv9A 85 :EMLADSEYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15536 # 2bnlA.10.8 read from T0287.t04.many.frag # found chain 2bnlA in template set T0287 10 :SMIADSKDK 2bnlA 9 :QFIAENQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15537 # 1tn6A.10.176 read from T0287.t04.many.frag # found chain 1tn6A in training set T0287 10 :SMIADSKDK 1tn6A 177 :EWLRDPSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15538 # 1i4dA.10.52 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 10 :SMIADSKDK 1i4dA 74 :DLSQKSPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15539 # 1xttA.10.15 read from T0287.t04.many.frag # found chain 1xttA in training set T0287 10 :SMIADSKDK 1xttA 16 :TQLRDKYTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15540 # 1v74B.10.10 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 10 :SMIADSKDK 1v74B 11 :KLFLASKIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15541 # 1n5uA.11.166 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 11 :MIADSKDKK 1n5uA 167 :ECCQAADKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15542 # 1otvA.11.195 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 11 :MIADSKDKK 1otvA 196 :AYCDSAEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15543 # 1qkrA.11.57 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 11 :MIADSKDKK 1qkrA 936 :LVRGGSGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15544 # 1z0wA.11.183 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MIA 1z0wA 598 :HVL T0287 15 :S 1z0wA 602 :D T0287 17 :DKK 1z0wA 604 :KKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=15547 # 1ah7.11.200 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 11 :MIADSKDKK 1ah7 201 :KAAVSQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15548 # 1v58A.11.147 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 11 :MIADSKDKK 1v58A 148 :AILASKDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15549 # 1n1bA.11.214 read from T0287.t04.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)K19 (1n1bA)N272 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADSKDK 1n1bA 264 :AYARRPDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15550 # 1elkA.11.42 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 11 :MIADSKDKK 1elkA 39 :IINETEEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15551 # 1ci4A.11.47 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 11 :MIADSKDKK 1ci4A 48 :QFLVLKKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15552 # 1zv1A.11.18 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)I12 (1zv1A)F20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1zv1A)L26 because G (3-10) conformation "forbidden" or filtered. T0287 11 :M 1zv1A 19 :K T0287 13 :ADSKD 1zv1A 21 :RYPWE T0287 19 :K 1zv1A 27 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=15555 # 1aa7A.11.12 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 11 :MIADSKDKK 1aa7A 13 :SIIPSGPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15556 # 1t0qB.11.273 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)K16 (1t0qB)E279 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADS 1t0qB 274 :MALEK T0287 18 :KK 1t0qB 281 :NR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15558 # 1ak0.11.95 read from T0287.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 T0287 11 :MIADSKDK 1ak0 96 :RVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=15559 # 1zc6A.11.172 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1zc6A)R178 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1zc6A)S180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 (1zc6A)H181 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIAD 1zc6A 173 :MALD T0287 17 :D 1zc6A 179 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=15561 # 1hw1A.11.129 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 11 :MIADSKDKK 1hw1A 130 :TANEVADHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15562 # 1g8mA.11.157 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 11 :MIADSKDKK 1g8mA 158 :EMAASKDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15563 # 2bl2A.11.42 read from T0287.t04.many.frag # found chain 2bl2A in template set Warning: unaligning (T0287)K16 (2bl2A)Q48 because D (zeta) conformation "forbidden" or filtered. T0287 11 :MIADS 2bl2A 43 :ALTTS T0287 17 :DKK 2bl2A 49 :PEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15565 # 1kxu.11.137 read from T0287.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MIA 1kxu 128 :NLR T0287 15 :SKDKK 1kxu 132 :SPLGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15567 # 1zybA.11.194 read from T0287.t04.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)I12 (1zybA)L184 because G (3-10) conformation "forbidden" or filtered. T0287 11 :M 1zybA 183 :C T0287 13 :ADSKDKK 1zybA 185 :DDTRLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15569 # 1tu9A.11.14 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADSK 1tu9A 13 :RCCAST T0287 18 :KK 1tu9A 20 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=15571 # 1i4dA.11.53 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 11 :MIADSKDKK 1i4dA 75 :LSQKSPELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15572 # 1wb9A.11.438 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 11 :MIA 1wb9A 439 :LAD T0287 16 :KDKK 1wb9A 444 :TDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15574 # 1on2A.11.30 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)A13 (1on2A)A33 because L (left) conformation "forbidden" or filtered. T0287 11 :MI 1on2A 31 :AL T0287 14 :DSKDKK 1on2A 34 :VHPSSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=15576 # 1f7lA.11.17 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 11 :MIADSKDKK 1f7lA 18 :MAGRQKRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15577 # 1jfbA.11.156 read from T0287.t04.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1jfbA)V159 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MI 1jfbA 156 :LL T0287 15 :SKDKK 1jfbA 160 :PFNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15579 # 1ez3A.11.36 read from T0287.t04.many.frag # found chain 1ez3A in template set T0287 11 :MIADSKDKK 1ez3A 60 :AILASPNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15580 # 1rzhM.11.236 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 11 :MIADSKDKK 1rzhM 237 :QIADRGTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15581 # 1xttA.11.16 read from T0287.t04.many.frag # found chain 1xttA in training set T0287 11 :MIADSKDKK 1xttA 17 :QLRDKYTDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15582 # 1q08A.11.27 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 11 :MIADSKDKK 1q08A 70 :IRIDPEHHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15583 # 1oksA.11.12 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 11 :MIADSKDKK 1oksA 13 :SSRLEEDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15584 # 1n5uA.12.167 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 12 :IADSKDKKE 1n5uA 168 :CCQAADKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15585 # 1otvA.12.196 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 12 :IADSKDKKE 1otvA 197 :YCDSAEKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15586 # 1qkrA.12.58 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 12 :IADSKDKKE 1qkrA 937 :VRGGSGNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15587 # 1z0wA.12.184 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADS 1z0wA 599 :VLED T0287 17 :DKKE 1z0wA 604 :KKKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=15589 # 1aa7A.12.13 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADS 1aa7A 14 :IIPS T0287 17 :DKKE 1aa7A 19 :PLKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15591 # 1ah7.12.201 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 12 :IADSKDKKE 1ah7 202 :AAVSQEYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15592 # 1v58A.12.148 read from T0287.t04.many.frag # found chain 1v58A in training set Warning: unaligning (T0287)D17 (1v58A)D154 because D (zeta) conformation "forbidden" or filtered. T0287 12 :IADSK 1v58A 149 :ILASK T0287 18 :KKE 1v58A 155 :PAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15594 # 1zv1A.12.19 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1zv1A 20 :F T0287 14 :DSKDKKE 1zv1A 22 :YPWELMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=15596 # 1n1bA.12.215 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 12 :IADSKDKKE 1n1bA 265 :YARRPDMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15597 # 1elkA.12.43 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 12 :IADSKDKKE 1elkA 40 :INETEEGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15598 # 1ci4A.12.48 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 12 :IADSK 1ci4A 49 :FLVLK T0287 18 :KKE 1ci4A 55 :DED Number of specific fragments extracted= 2 number of extra gaps= 1 total=15600 # 1hw1A.12.130 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IA 1hw1A 131 :AN T0287 15 :SKDKKE 1hw1A 134 :VADHAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15602 # 1kxu.12.138 read from T0287.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IA 1kxu 129 :LR T0287 15 :SKDKKE 1kxu 132 :SPLGQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15604 # 1t0qB.12.274 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IADSK 1t0qB 275 :ALEKE T0287 18 :KKE 1t0qB 281 :NRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15606 # 1ak0.12.96 read from T0287.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 12 :IADSKDK 1ak0 97 :VSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=15607 # 1on2A.12.31 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)A13 (1on2A)A33 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1on2A 32 :L T0287 14 :DSKDKKE 1on2A 34 :VHPSSVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=15609 # 1rzhM.12.237 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 12 :IADSKDKKE 1rzhM 238 :IADRGTAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15610 # 1i4dA.12.54 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 12 :IADSKDKKE 1i4dA 76 :SQKSPELQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15611 # 2bl2A.12.43 read from T0287.t04.many.frag # found chain 2bl2A in template set T0287 12 :IADSKDKKE 2bl2A 44 :LTTSQPEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15612 # 1wb9A.12.439 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 12 :IA 1wb9A 440 :AD T0287 16 :KDKKE 1wb9A 444 :TDYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15614 # 1jfbA.12.157 read from T0287.t04.many.frag # found chain 1jfbA in training set T0287 12 :IADSKDKKE 1jfbA 157 :LGVPFNDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15615 # 1m0wA.12.3 read from T0287.t04.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKE 1m0wA 7 :SKDQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15616 # 1oksA.12.13 read from T0287.t04.many.frag # found chain 1oksA in training set Warning: unaligning (T0287)A13 (1oksA)R15 because G (3-10) conformation "forbidden" or filtered. T0287 12 :I 1oksA 14 :S T0287 14 :DSKDKKE 1oksA 16 :LEEDRKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15618 # 1tu9A.12.15 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 12 :IADSKDKKE 1tu9A 14 :CCASTGFFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15619 # 1zybA.12.195 read from T0287.t04.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)I12 (1zybA)L184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKE 1zybA 186 :DTRLNIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=15620 # 1lvaA.12.26 read from T0287.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1lvaA)L405 because E (beta_S) conformation "forbidden" or filtered. T0287 12 :I 1lvaA 403 :A T0287 15 :SKDKKE 1lvaA 406 :SLEETR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15622 # 1ymtA.12.18 read from T0287.t04.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)D14 (1ymtA)E237 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IA 1ymtA 235 :EP T0287 15 :SKDKKE 1ymtA 238 :EDQVRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15624 # 1q52A.12.266 read from T0287.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)I12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q52A)L267 T0287 13 :ADSKDKKE 1q52A 268 :LDDGLVGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15625 # 1zc6A.12.173 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IAD 1zc6A 174 :ALD T0287 16 :KDKKE 1zc6A 178 :RHSHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15627 # 1r6xA.12.11 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 12 :IADSKDKKE 1r6xA 13 :IARDALKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15628 # 1qkrA.13.59 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 13 :ADSKDKKEK 1qkrA 938 :RGGSGNKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15629 # 1n5uA.13.168 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 13 :ADSKDKKEK 1n5uA 169 :CQAADKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15630 # 1otvA.13.197 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 13 :ADSKDKKEK 1otvA 198 :CDSAEKQNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15631 # 1aa7A.13.14 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :ADS 1aa7A 15 :IPS T0287 17 :DKKEK 1aa7A 19 :PLKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15633 # 1z0wA.13.185 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1z0wA 600 :L T0287 15 :S 1z0wA 602 :D T0287 17 :DKKEK 1z0wA 604 :KKKNR Number of specific fragments extracted= 3 number of extra gaps= 2 total=15636 # 1zv1A.13.20 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1zv1A 22 :YPWELMPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15637 # 1on2A.13.32 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)A13 (1on2A)A33 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1on2A 34 :VHPSSVTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15638 # 1ah7.13.202 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 13 :ADSKDKKEK 1ah7 203 :AVSQEYADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15639 # 1ci4A.13.49 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. T0287 13 :ADS 1ci4A 50 :LVL T0287 17 :DKKEK 1ci4A 54 :KDEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15641 # 1lvaA.13.27 read from T0287.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1lvaA 405 :LSLEETRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15642 # 1kxu.13.139 read from T0287.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1kxu 130 :R T0287 15 :SKDKKEK 1kxu 132 :SPLGQEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15644 # 1n1bA.13.216 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 13 :ADSKDKKEK 1n1bA 266 :ARRPDMNPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15645 # 1m0wA.13.4 read from T0287.t04.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEK 1m0wA 7 :SKDQLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15646 # 1oksA.13.14 read from T0287.t04.many.frag # found chain 1oksA in training set Warning: unaligning (T0287)A13 (1oksA)R15 because G (3-10) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1oksA 16 :LEEDRKRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=15647 # 1hw1A.13.131 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 13 :ADSKDKKEK 1hw1A 132 :NEVADHADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15648 # 1v58A.13.149 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 13 :ADSKDKKEK 1v58A 150 :LASKDPAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15649 # 1elkA.13.44 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 13 :ADSKDKKEK 1elkA 41 :NETEEGPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15650 # 1rzhM.13.238 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 13 :ADSKDKKEK 1rzhM 239 :ADRGTAAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=15651 # 1q52A.13.267 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 13 :ADSKDKKEK 1q52A 268 :LDDGLVGQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15652 # 1t0qB.13.275 read from T0287.t04.many.frag # found chain 1t0qB in template set T0287 13 :ADSKDKKEK 1t0qB 276 :LEKEGNREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15653 # 1ymtA.13.19 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 13 :ADSKDKKEK 1ymtA 236 :PEEDQVRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15654 # 1ak0.13.97 read from T0287.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 13 :ADSKDK 1ak0 98 :SDSSLS T0287 21 :K 1ak0 106 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=15656 # 1jfbA.13.158 read from T0287.t04.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1jfbA)D163 because G (3-10) conformation "forbidden" or filtered. T0287 14 :DSKD 1jfbA 159 :VPFN T0287 19 :KEK 1jfbA 164 :LEY Number of specific fragments extracted= 2 number of extra gaps= 2 total=15658 # 1i4dA.13.55 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 13 :ADSKDKKEK 1i4dA 77 :QKSPELQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15659 # 1r6xA.13.12 read from T0287.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)S15 (1r6xA)D16 because G (3-10) conformation "forbidden" or filtered. T0287 13 :AD 1r6xA 14 :AR T0287 16 :KDKKEK 1r6xA 17 :ALKKNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15661 # 2ayuA.13.86 read from T0287.t04.many.frag # found chain 2ayuA in template set T0287 13 :ADSKDKKEK 2ayuA 87 :GLPKNVKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15662 # 1yrtA.13.208 read from T0287.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1yrtA 209 :V T0287 15 :SKDKKEK 1yrtA 211 :SGDSVTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15664 # 1szhA.13.17 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 13 :ADSKDKKEK 1szhA 32 :CCTRNRQEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15665 # 1wb9A.13.440 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 13 :A 1wb9A 441 :D T0287 16 :KDKKEK 1wb9A 444 :TDYLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=15667 # 2bl2A.13.44 read from T0287.t04.many.frag # found chain 2bl2A in template set T0287 13 :ADSKDKKEK 2bl2A 45 :TTSQPEKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15668 # 1qkrA.14.60 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 14 :DSKDKKEKL 1qkrA 939 :GGSGNKRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15669 # 1n5uA.14.169 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 14 :DSKDKKEKL 1n5uA 170 :QAADKAACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15670 # 1aa7A.14.15 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKL 1aa7A 19 :PLKAEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=15672 # 1otvA.14.198 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 14 :DSKDKKEKL 1otvA 199 :DSAEKQNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15673 # 1on2A.14.33 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 14 :DSKDKKEKL 1on2A 34 :VHPSSVTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15674 # 1z0wA.14.186 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 14 :DS 1z0wA 601 :ED T0287 17 :DKKEKL 1z0wA 604 :KKKNRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15676 # 1lvaA.14.28 read from T0287.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)D14 (1lvaA)L405 because E (beta_S) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1lvaA 406 :SLEETRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15677 # 1kxu.14.140 read from T0287.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1kxu 132 :SPLGQEKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15678 # 1hw1A.14.132 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)S15 (1hw1A)V134 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1hw1A 133 :E T0287 16 :KDKKEKL 1hw1A 135 :ADHADAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=15680 # 1rzhM.14.239 read from T0287.t04.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)D14 (1rzhM)D240 because D (zeta) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1rzhM 241 :RGTAAERA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15681 # 1ci4A.14.50 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 14 :DSK 1ci4A 51 :VLK T0287 18 :KKEKL 1ci4A 55 :DEDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=15683 # 1zv1A.14.21 read from T0287.t04.many.frag # found chain 1zv1A in template set T0287 14 :DSKDKKEKL 1zv1A 22 :YPWELMPLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15684 # 1szhA.14.18 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 14 :DSKDKKEKL 1szhA 33 :CTRNRQECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15685 # 1m0wA.14.5 read from T0287.t04.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEKL 1m0wA 7 :SKDQLNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15686 # 1r6xA.14.13 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 14 :DSKDKKEKL 1r6xA 15 :RDALKKNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15687 # 1yovA.14.237 read from T0287.t04.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1yovA)T236 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKL 1yovA 237 :YKEKEDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15688 # 1ah7.14.203 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 14 :DSKDKKEKL 1ah7 204 :VSQEYADKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15689 # 1ymtA.14.20 read from T0287.t04.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)D14 (1ymtA)E237 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1ymtA 238 :EDQVRARI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15690 # 1q52A.14.268 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 14 :DSKDKKEKL 1q52A 269 :DDGLVGQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15691 # 1oksA.14.15 read from T0287.t04.many.frag # found chain 1oksA in training set Warning: unaligning (T0287)S15 (1oksA)E17 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1oksA 16 :L T0287 16 :KDKKEKL 1oksA 18 :EDRKRYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15693 # 1gxjA.14.40 read from T0287.t04.many.frag # found chain 1gxjA in template set T0287 14 :DSKDKKEKL 1gxjA 525 :EVDEKYSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15694 # 1yiiA.14.28 read from T0287.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)D17 (1yiiA)T33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1yiiA)D34 because N (gamma') conformation "forbidden" or filtered. T0287 14 :DSK 1yiiA 30 :GMG T0287 19 :KEKL 1yiiA 35 :EETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15696 # 1xdpA.14.66 read from T0287.t04.many.frag # found chain 1xdpA in template set T0287 14 :DSKDKKEKL 1xdpA 68 :GSNSHSRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15697 # 1g2yA.14.17 read from T0287.t04.many.frag # found chain 1g2yA in training set T0287 14 :DSKDKKEKL 1g2yA 18 :ESGLSKEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15698 # 1n1bA.14.217 read from T0287.t04.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)K18 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DSKD 1n1bA 267 :RRPD T0287 19 :KEKL 1n1bA 272 :NPLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15700 # 1jfbA.14.159 read from T0287.t04.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)S15 (1jfbA)P160 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1jfbA 159 :V T0287 16 :KDKKEKL 1jfbA 161 :FNDLEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15702 # 1elkA.14.45 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 14 :DSKDKKEKL 1elkA 42 :ETEEGPKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15703 # 1yrtA.14.209 read from T0287.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1yrtA 211 :SGDSVTDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=15704 # 1i4dA.14.56 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 14 :DSKDKKEKL 1i4dA 78 :KSPELQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15705 # 2ayuA.14.87 read from T0287.t04.many.frag # found chain 2ayuA in template set T0287 14 :DSKDKKEKL 2ayuA 88 :LPKNVKEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15706 # 1qkrA.15.61 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 15 :SKDKKEKLI 1qkrA 940 :GSGNKRALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15707 # 1aa7A.15.16 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKLI 1aa7A 19 :PLKAEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15709 # 1szhA.15.19 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 15 :SKDKKEKLI 1szhA 34 :TRNRQECCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15710 # 1on2A.15.34 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 15 :SKDKKEKLI 1on2A 35 :HPSSVTKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15711 # 1z0wA.15.187 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1z0wA 602 :D T0287 17 :DKKEKLI 1z0wA 604 :KKKNRLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=15713 # 1otvA.15.199 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 15 :SKDKKEKLI 1otvA 200 :SAEKQNRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=15714 # 1r6xA.15.14 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 15 :SKDKKEKLI 1r6xA 16 :DALKKNELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15715 # 1w8iA.15.55 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 15 :SKDKKEKLI 1w8iA 56 :KKLPADKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15716 # 1g2yA.15.18 read from T0287.t04.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1g2yA)S22 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :S 1g2yA 19 :S T0287 17 :D 1g2yA 21 :L T0287 19 :KEKLI 1g2yA 23 :KEALI Number of specific fragments extracted= 3 number of extra gaps= 2 total=15719 # 1lvaA.15.29 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 15 :SKDKKEKLI 1lvaA 406 :SLEETRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15720 # 1rzhM.15.240 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 15 :SKDKKEKLI 1rzhM 241 :RGTAAERAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15721 # 1kxu.15.141 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 15 :SKDKKEKLI 1kxu 132 :SPLGQEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15722 # 1n5uA.15.170 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)S15 (1n5uA)A171 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1n5uA 172 :ADKAACLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15723 # 1yiiA.15.29 read from T0287.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)K16 (1yiiA)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :S 1yiiA 31 :M T0287 17 :DKKEKLI 1yiiA 33 :TDEETIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15725 # 1hw1A.15.133 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 15 :SKDKKEKLI 1hw1A 134 :VADHADAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15726 # 1ci4A.15.51 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 15 :S 1ci4A 52 :L T0287 18 :KKEKLI 1ci4A 55 :DEDLFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15728 # 1ymtA.15.21 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 15 :SKDKKEKLI 1ymtA 238 :EDQVRARIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15729 # 1yovA.15.238 read from T0287.t04.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKLI 1yovA 237 :YKEKEDFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15730 # 1uw4B.15.16 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 15 :SKDKKEKLI 1uw4B 784 :SKVTTEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15731 # 1r7jA.15.32 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 15 :SKDKKEKLI 1r7jA 33 :SYALTGRYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15732 # 1oksA.15.16 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 15 :SKDKKEKLI 1oksA 17 :EEDRKRYLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15733 # 1xdpA.15.67 read from T0287.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)K18 (1xdpA)H72 because N (gamma') conformation "forbidden" or filtered. T0287 15 :SKD 1xdpA 69 :SNS T0287 19 :KEKLI 1xdpA 73 :SRHLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15735 # 1usyA.15.142 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 15 :SKDKKEKLI 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15736 # 1q52A.15.269 read from T0287.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :S 1q52A 270 :D T0287 17 :DKKEKLI 1q52A 272 :LVGQQLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=15738 # 1zv1A.15.22 read from T0287.t04.many.frag # found chain 1zv1A in template set T0287 15 :SKDKKEKLI 1zv1A 23 :PWELMPLMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15739 # 1m0wA.15.6 read from T0287.t04.many.frag # found chain 1m0wA in training set T0287 15 :SKDKKEKLI 1m0wA 7 :SKDQLNELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15740 # 1gxjA.15.41 read from T0287.t04.many.frag # found chain 1gxjA in template set T0287 15 :SKDKKEKLI 1gxjA 526 :VDEKYSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15741 # 1x3zB.15.34 read from T0287.t04.many.frag # found chain 1x3zB in template set T0287 15 :SKDKKEKLI 1x3zB 272 :NPEALAPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15742 # 1elkA.15.46 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 15 :SKDKKEKLI 1elkA 43 :TEEGPKDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15743 # 1v0jA.15.114 read from T0287.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0287)S15 (1v0jA)K115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)T118 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)T118 T0287 16 :K 1v0jA 116 :Y T0287 19 :KEKLI 1v0jA 119 :PEQAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=15745 # 1qkrA.16.62 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 16 :KDKKEKLIE 1qkrA 941 :SGNKRALIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15746 # 1on2A.16.35 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 16 :KDKKEKLIE 1on2A 36 :PSSVTKMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15747 # 1szhA.16.20 read from T0287.t04.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)K18 (1szhA)R37 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KD 1szhA 35 :RN T0287 19 :KEKLIE 1szhA 38 :QECCIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15749 # 1r6xA.16.15 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 16 :KDKKEKLIE 1r6xA 17 :ALKKNELLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15750 # 1uw4B.16.17 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 16 :KDKKEKLIE 1uw4B 785 :KVTTEKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15751 # 1aa7A.16.17 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1aa7A 19 :PLKAEIAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15752 # 1w8iA.16.56 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 16 :KDKKEKLIE 1w8iA 57 :KLPADKFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15753 # 1lvaA.16.30 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 16 :KDKKEKLIE 1lvaA 407 :LEETRKLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15754 # 1r7jA.16.33 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 16 :KDKKEKLIE 1r7jA 34 :YALTGRYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15755 # 1otvA.16.200 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 16 :KDKKEKLIE 1otvA 201 :AEKQNRMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15756 # 1ci4A.16.52 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 18 :KKEKLIE 1ci4A 55 :DEDLFRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=15757 # 1usyA.16.143 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 16 :KDKKEKLIE 1usyA 144 :KDLHEKVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15758 # 1rzhM.16.241 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 16 :KDKKEKLIE 1rzhM 242 :GTAAERAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15759 # 1z0wA.16.188 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 16 :KDKKEKLIE 1z0wA 603 :GKKKNRLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15760 # 1g2yA.16.19 read from T0287.t04.many.frag # found chain 1g2yA in training set T0287 16 :KDKKEKLIE 1g2yA 20 :GLSKEALIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15761 # 1yovA.16.239 read from T0287.t04.many.frag # found chain 1yovA in template set T0287 16 :KDKKEKLIE 1yovA 237 :YKEKEDFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15762 # 1gxjA.16.42 read from T0287.t04.many.frag # found chain 1gxjA in template set T0287 16 :KDKKEKLIE 1gxjA 527 :DEKYSLAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15763 # 1ymtA.16.22 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 16 :KDKKEKLIE 1ymtA 239 :DQVRARIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15764 # 1hw1A.16.134 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1hw1A 136 :DHADAFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=15765 # 1kxu.16.142 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 16 :KDKKEKLIE 1kxu 133 :PLGQEKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15766 # 1oksA.16.17 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 16 :KDKKEKLIE 1oksA 18 :EDRKRYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15767 # 1yiiA.16.30 read from T0287.t04.many.frag # found chain 1yiiA in training set T0287 16 :KDKKEKLIE 1yiiA 32 :GTDEETILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15768 # 1jr2A.16.139 read from T0287.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIE 1jr2A 122 :AEKLAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=15770 # 1q52A.16.270 read from T0287.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1q52A 272 :LVGQQLFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15771 # 1p4xA.16.63 read from T0287.t04.many.frag # found chain 1p4xA in template set Warning: unaligning (T0287)K18 (1p4xA)D66 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KD 1p4xA 64 :QS T0287 19 :KEKLIE 1p4xA 67 :LVQHIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15773 # 1m0wA.16.7 read from T0287.t04.many.frag # found chain 1m0wA in training set T0287 16 :KDKKEKLIE 1m0wA 8 :KDQLNELIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15774 # 1xdpA.16.68 read from T0287.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)K16 (1xdpA)N70 because G (3-10) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1xdpA 71 :SHSRHLLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=15775 # 1x3zB.16.35 read from T0287.t04.many.frag # found chain 1x3zB in template set T0287 16 :KDKKEKLIE 1x3zB 273 :PEALAPLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15776 # 2d28C.16.3 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 16 :KDKKEKLIE 2d28C 4 :RSAETRIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15777 # 1zv1A.16.23 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)K18 (1zv1A)L26 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KD 1zv1A 24 :WE T0287 19 :KEKLIE 1zv1A 27 :MPLMYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=15779 # 1qkrA.17.63 read from T0287.t04.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)K18 (1qkrA)N943 because G (3-10) conformation "forbidden" or filtered. T0287 17 :D 1qkrA 942 :G T0287 19 :KEKLIES 1qkrA 944 :KRALIQC Number of specific fragments extracted= 2 number of extra gaps= 1 total=15781 # 1on2A.17.36 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 17 :DKKEKLIES 1on2A 37 :SSVTKMVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15782 # 1szhA.17.21 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 17 :DKKEKLIES 1szhA 36 :NRQECCIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15783 # 1uw4B.17.18 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 17 :DKKEKLIES 1uw4B 786 :VTTEKVLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15784 # 1r6xA.17.16 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 17 :DKKEKLIES 1r6xA 18 :LKKNELLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15785 # 1w8iA.17.57 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 17 :DKKEKLIES 1w8iA 58 :LPADKFLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15786 # 1usyA.17.144 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 17 :DKKEKLIES 1usyA 145 :DLHEKVLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15787 # 1aa7A.17.18 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 17 :DKKEKLIES 1aa7A 19 :PLKAEIAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15788 # 1r7jA.17.34 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 17 :DKKEKLIES 1r7jA 35 :ALTGRYIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15789 # 1ci4A.17.53 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 18 :KKEKLIES 1ci4A 55 :DEDLFREW Number of specific fragments extracted= 1 number of extra gaps= 1 total=15790 # 1lvaA.17.31 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 17 :DKKEKLIES 1lvaA 408 :EETRKLLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15791 # 1jr2A.17.140 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 17 :DKKEKLIES 1jr2A 120 :GNAEKLAEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15792 # 1otvA.17.201 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 17 :DKKEKLIES 1otvA 202 :EKQNRMLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15793 # 1yovA.17.240 read from T0287.t04.many.frag # found chain 1yovA in template set T0287 17 :DKKEKLIES 1yovA 238 :KEKEDFRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15794 # 1ymtA.17.23 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 17 :DKKEKLIES 1ymtA 240 :QVRARIVGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15795 # 1z0wA.17.189 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 17 :DKKEKLIES 1z0wA 604 :KKKNRLMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15796 # 1g2yA.17.20 read from T0287.t04.many.frag # found chain 1g2yA in training set T0287 17 :DKKEKLIES 1g2yA 21 :LSKEALIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15797 # 2d28C.17.4 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 17 :DKKEKLIES 2d28C 5 :SAETRIVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15798 # 1s9rA.17.88 read from T0287.t04.many.frag # found chain 1s9rA in training set T0287 17 :DKKEKLIES 1s9rA 89 :EAKDKLIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15799 # 1yiiA.17.31 read from T0287.t04.many.frag # found chain 1yiiA in training set T0287 17 :DKKEKLIES 1yiiA 33 :TDEETILKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15800 # 1q52A.17.271 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 17 :DKKEKLIES 1q52A 272 :LVGQQLFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15801 # 1kxu.17.143 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 17 :DKKEKLIES 1kxu 134 :LGQEKALEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15802 # 1oksA.17.18 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 17 :DKKEKLIES 1oksA 19 :DRKRYLMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15803 # 1rzhM.17.242 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 17 :DKKEKLIES 1rzhM 243 :TAAERAALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15804 # 1m0wA.17.8 read from T0287.t04.many.frag # found chain 1m0wA in training set T0287 17 :DKKEKLIES 1m0wA 9 :DQLNELIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15805 # 1x3zB.17.36 read from T0287.t04.many.frag # found chain 1x3zB in template set T0287 17 :DKKEKLIES 1x3zB 274 :EALAPLLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15806 # 1hw1A.17.135 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 17 :DKKEKLIES 1hw1A 136 :DHADAFAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15807 # 1wu7A.17.192 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 17 :DKKEKLIES 1wu7A 193 :ISREEFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15808 # 1q08A.17.19 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 17 :DKKEKLIES 1q08A 62 :ESIRELLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15809 # 1gk9B.17.313 read from T0287.t04.many.frag # found chain 1gk9B in training set T0287 17 :DKKEKLIES 1gk9B 314 :DPRRQLVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=15810 # 1on2A.18.37 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 18 :KKEKLIESL 1on2A 38 :SVTKMVQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15811 # 1uw4B.18.19 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)K18 (1uw4B)T787 because G (3-10) conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1uw4B 788 :TEKVLRQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15812 # 1r6xA.18.17 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 18 :KKEKLIESL 1r6xA 19 :KKNELLSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15813 # 1r7jA.18.35 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 18 :KKEKLIESL 1r7jA 36 :LTGRYIKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=15814 # 1w8iA.18.58 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 18 :KKEKLIESL 1w8iA 59 :PADKFLEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15815 # 1lvaA.18.32 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 18 :KKEKLIESL 1lvaA 409 :ETRKLLQSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15816 # 1szhA.18.22 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 18 :KKEKLIESL 1szhA 37 :RQECCIEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15817 # 1qkrA.18.64 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 18 :KKEKLIESL 1qkrA 943 :NKRALIQCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15818 # 1usyA.18.145 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 18 :KKEKLIESL 1usyA 146 :LHEKVLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15819 # 1aa7A.18.19 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 18 :KKEKLIESL 1aa7A 20 :LKAEIAQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15820 # 1jr2A.18.141 read from T0287.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1jr2A 122 :AEKLAEYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15821 # 2d28C.18.5 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 18 :KKEKLIESL 2d28C 6 :AETRIVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15822 # 1otvA.18.202 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 18 :KKEKLIESL 1otvA 203 :KQNRMLEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15823 # 1ci4A.18.54 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 18 :KKEKLIESL 1ci4A 55 :DEDLFREWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15824 # 1i58A.18.103 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 18 :KKEKLIESL 1i58A 455 :DKEKIIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15825 # 1yovA.18.241 read from T0287.t04.many.frag # found chain 1yovA in template set T0287 18 :KKEKLIESL 1yovA 239 :EKEDFRDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15826 # 1s9rA.18.89 read from T0287.t04.many.frag # found chain 1s9rA in training set T0287 18 :KKEKLIESL 1s9rA 90 :AKDKLIEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15827 # 1sflA.18.112 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 18 :KKEKLIESL 1sflA 113 :KHQRIITHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15828 # 1q52A.18.272 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 18 :KKEKLIESL 1q52A 273 :VGQQLFAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15829 # 1z0wA.18.190 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 18 :KKEKLIESL 1z0wA 605 :KKNRLMSKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15830 # 1kxu.18.144 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 18 :KKEKLIESL 1kxu 135 :GQEKALEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15831 # 2ahrA.18.170 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 18 :KKEKLIESL 2ahrA 168 :YIYLFIEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15832 # 1p4xA.18.65 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 18 :KKEKLIESL 1p4xA 66 :DLVQHIKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15833 # 1ctf.18.17 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 18 :KKEKLIESL 1ctf 64 :NKVAVIKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15834 # 1ymtA.18.24 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 18 :KKEKLIESL 1ymtA 241 :VRARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15835 # 1wu7A.18.193 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 18 :KKEKLIESL 1wu7A 194 :SREEFVDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15836 # 1yvrA.18.220 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 18 :KKEKLIESL 1yvrA 221 :ETEKVLKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15837 # 1m0wA.18.9 read from T0287.t04.many.frag # found chain 1m0wA in training set T0287 18 :KKEKLIESL 1m0wA 10 :QLNELIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15838 # 1yiiA.18.32 read from T0287.t04.many.frag # found chain 1yiiA in training set T0287 18 :KKEKLIESL 1yiiA 34 :DEETILKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15839 # 1dc1A.18.89 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 18 :KKEKLIESL 1dc1A 90 :DKKESINNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15840 # 1on2A.19.38 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 19 :KEKLIESLQ 1on2A 39 :VTKMVQKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15841 # 1uw4B.19.20 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 19 :KEKLIESLQ 1uw4B 788 :TEKVLRQMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15842 # 1w8iA.19.59 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 19 :KEKLIESLQ 1w8iA 60 :ADKFLEGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15843 # 2d28C.19.6 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 19 :KEKLIESLQ 2d28C 7 :ETRIVEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15844 # 1r7jA.19.36 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 19 :KEKLIESLQ 1r7jA 37 :TGRYIKMLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15845 # 1r6xA.19.18 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 19 :KEKLIESLQ 1r6xA 20 :KNELLSEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15846 # 1lvaA.19.33 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 19 :KEKLIESLQ 1lvaA 410 :TRKLLQSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15847 # 1szhA.19.23 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 19 :KEKLIESLQ 1szhA 38 :QECCIEIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15848 # 1aa7A.19.20 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 19 :KEKLIESLQ 1aa7A 21 :KAEIAQRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15849 # 1jr2A.19.142 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 19 :KEKLIESLQ 1jr2A 122 :AEKLAEYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15850 # 1ci4A.19.55 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 19 :KEKLIESLQ 1ci4A 56 :EDLFREWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15851 # 2ahrA.19.171 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 19 :KEKLIESLQ 2ahrA 169 :IYLFIEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15852 # 1i58A.19.104 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 19 :KEKLIESLQ 1i58A 456 :KEKIIRKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15853 # 1sflA.19.113 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 19 :KEKLIESLQ 1sflA 114 :HQRIITHLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15854 # 1jkeA.19.41 read from T0287.t04.many.frag # found chain 1jkeA in training set T0287 19 :KEKLIESLQ 1jkeA 42 :ANRLCERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15855 # 2fnuA.19.297 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 19 :KEKLIESLQ 2fnuA 298 :KKLILESLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15856 # 1usyA.19.146 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 19 :KEKLIESLQ 1usyA 147 :HEKVLNLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=15857 # 1r71A.19.23 read from T0287.t04.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1r71A)A140 T0287 20 :EKLIESLQ 1r71A 141 :DQVIENLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15858 # 1ctf.19.18 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 19 :KEKLIESLQ 1ctf 65 :KVAVIKAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15859 # 1otvA.19.203 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 19 :KEKLIESLQ 1otvA 204 :QNRMLEILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15860 # 1yovA.19.242 read from T0287.t04.many.frag # found chain 1yovA in template set T0287 19 :KEKLIESLQ 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15861 # 1dc1A.19.90 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 19 :KEKLIESLQ 1dc1A 91 :KKESINNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15862 # 1wu7A.19.194 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 19 :KEKLIESLQ 1wu7A 195 :REEFVDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15863 # 1q52A.19.273 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 19 :KEKLIESLQ 1q52A 274 :GQQLFAGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15864 # 1s9rA.19.90 read from T0287.t04.many.frag # found chain 1s9rA in training set T0287 19 :KEKLIESLQ 1s9rA 91 :KDKLIEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15865 # 1p4xA.19.66 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 19 :KEKLIESLQ 1p4xA 67 :LVQHIKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15866 # 1qkrA.19.65 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 19 :KEKLIESLQ 1qkrA 944 :KRALIQCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15867 # 2b0tA.19.90 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 19 :KEKLIESLQ 2b0tA 91 :LKAAIKELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15868 # 1kxu.19.145 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 19 :KEKLIESLQ 1kxu 136 :QEKALEQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15869 # 1ymtA.19.25 read from T0287.t04.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)Q27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ymtA)Q259 T0287 19 :KEKLIESL 1ymtA 242 :RARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15870 # 1on2A.20.39 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 20 :EKLIESLQE 1on2A 40 :TKMVQKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15871 # 1uw4B.20.21 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 20 :EKLIESLQE 1uw4B 789 :EKVLRQMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15872 # 2d28C.20.7 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 20 :EKLIESLQE 2d28C 8 :TRIVEALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15873 # 1w8iA.20.60 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 20 :EKLIESLQE 1w8iA 61 :DKFLEGFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15874 # 1r7jA.20.37 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 20 :EKLIESLQE 1r7jA 38 :GRYIKMLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15875 # 2ahrA.20.172 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 20 :EKLIESLQE 2ahrA 170 :YLFIEALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15876 # 1i58A.20.105 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 20 :EKLIESLQE 1i58A 457 :EKIIRKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15877 # 1lvaA.20.34 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 20 :EKLIESLQE 1lvaA 411 :RKLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15878 # 1sflA.20.114 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 20 :EKLIESLQE 1sflA 115 :QRIITHLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15879 # 1r6xA.20.19 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 20 :EKLIESLQE 1r6xA 21 :NELLSEAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15880 # 1r71A.20.24 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 20 :EKLIESLQE 1r71A 141 :DQVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15881 # 1ci4A.20.56 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 20 :EKLIESLQE 1ci4A 57 :DLFREWLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15882 # 1szhA.20.24 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 20 :EKLIESLQE 1szhA 39 :ECCIEIMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15883 # 1aa7A.20.21 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 20 :EKLIESLQE 1aa7A 22 :AEIAQRLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=15884 # 1dc1A.20.91 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 20 :EKLIESLQE 1dc1A 92 :KESINNLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15885 # 2fnuA.20.298 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 20 :EKLIESLQE 2fnuA 299 :KLILESLHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15886 # 1jr2A.20.143 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 20 :EKLIESLQE 1jr2A 123 :EKLAEYICS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15887 # 1jkeA.20.42 read from T0287.t04.many.frag # found chain 1jkeA in training set T0287 20 :EKLIESLQE 1jkeA 43 :NRLCERVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15888 # 1s9rA.20.91 read from T0287.t04.many.frag # found chain 1s9rA in training set T0287 20 :EKLIESLQE 1s9rA 92 :DKLIEEFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15889 # 1ctf.20.19 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 20 :EKLIESLQE 1ctf 66 :VAVIKAVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15890 # 2b0tA.20.91 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 20 :EKLIESLQE 2b0tA 92 :KAAIKELQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15891 # 1p4xA.20.67 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 20 :EKLIESLQE 1p4xA 68 :VQHIKVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15892 # 1kxu.20.146 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 20 :EKLIESLQE 1kxu 137 :EKALEQILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15893 # 1wu7A.20.195 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 20 :EKLIESLQE 1wu7A 196 :EEFVDQLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15894 # 1q52A.20.274 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 20 :EKLIESLQE 1q52A 275 :QQLFAGEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15895 # 1xg8A.20.66 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 20 :EKLIESLQE 1xg8A 58 :LQFIERIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15896 # 1oi7A.20.258 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 20 :EKLIESLQE 1oi7A 259 :ESKLRAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15897 # 1qvzA.20.81 read from T0287.t04.many.frag # found chain 1qvzA in template set Warning: unaligning (T0287)S25 (1qvzA)K87 because G (3-10) conformation "forbidden" or filtered. T0287 20 :EKLIE 1qvzA 82 :NKTLA T0287 26 :LQE 1qvzA 88 :IKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=15899 # 1otvA.20.204 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 20 :EKLIESLQE 1otvA 205 :NRMLEILQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15900 # 1pu6A.20.48 read from T0287.t04.many.frag # found chain 1pu6A in training set T0287 20 :EKLIESLQE 1pu6A 49 :LKSLENLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15901 # 2d28C.21.8 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 21 :KLIESLQEN 2d28C 9 :RIVEALLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=15902 # 1on2A.21.40 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 21 :KLIESLQEN 1on2A 41 :KMVQKLDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15903 # 1uw4B.21.22 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 21 :KLIESLQEN 1uw4B 790 :KVLRQMRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15904 # 1w8iA.21.61 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 21 :KLIESLQEN 1w8iA 62 :KFLEGFVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=15905 # 1r7jA.21.38 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 21 :KLIESLQEN 1r7jA 39 :RYIKMLMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15906 # 1r71A.21.25 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 21 :KLIESLQEN 1r71A 142 :QVIENLQRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15907 # 1i58A.21.106 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 21 :KLIESLQEN 1i58A 458 :KIIRKAIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15908 # 1sflA.21.115 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 21 :KLIESLQEN 1sflA 116 :RIITHLQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15909 # 2ahrA.21.173 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 21 :KLIESLQEN 2ahrA 171 :LFIEALAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15910 # 1aa7A.21.22 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 21 :KLIESLQEN 1aa7A 23 :EIAQRLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15911 # 2fnuA.21.299 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 21 :KLIESLQEN 2fnuA 300 :LILESLHKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15912 # 1szhA.21.25 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 21 :KLIESLQEN 1szhA 40 :CCIEIMKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15913 # 1ci4A.21.57 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 21 :KLIESLQEN 1ci4A 58 :LFREWLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15914 # 1r6xA.21.20 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 21 :KLIESLQEN 1r6xA 22 :ELLSEAQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15915 # 1pu6A.21.49 read from T0287.t04.many.frag # found chain 1pu6A in training set T0287 21 :KLIESLQEN 1pu6A 50 :KSLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15916 # 1jkeA.21.43 read from T0287.t04.many.frag # found chain 1jkeA in training set T0287 21 :KLIESLQEN 1jkeA 44 :RLCERVLGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15917 # 1sd4A.21.28 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 21 :KLIESLQEN 1sd4A 29 :EIVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15918 # 1jr2A.21.144 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 21 :KLIESLQEN 1jr2A 124 :KLAEYICSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15919 # 1ctf.21.20 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 21 :KLIESLQEN 1ctf 67 :AVIKAVRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15920 # 1yj7A.21.48 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 21 :KLIESLQEN 1yj7A 68 :RAITILNNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15921 # 2b0tA.21.92 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 21 :KLIESLQEN 2b0tA 93 :AAIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15922 # 1lvaA.21.35 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 21 :KLIESLQEN 1lvaA 412 :KLLQSMAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15923 # 1oi7A.21.259 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 21 :KLIESLQEN 1oi7A 260 :SKLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15924 # 1dc1A.21.92 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 21 :KLIESLQEN 1dc1A 93 :ESINNLIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15925 # 2bwbA.21.8 read from T0287.t04.many.frag # found chain 2bwbA in template set T0287 21 :KLIESLQEN 2bwbA 334 :HQLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15926 # 1qvzA.21.82 read from T0287.t04.many.frag # found chain 1qvzA in template set T0287 21 :KLIESLQEN 1qvzA 83 :KTLAKIKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15927 # 1l0bA.21.75 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)Q27 (1l0bA)Q1670 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESL 1l0bA 1664 :WVIKSI T0287 28 :EN 1l0bA 1671 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=15929 # 2tpt.21.5 read from T0287.t04.many.frag # found chain 2tpt in template set T0287 21 :KLIESLQEN 2tpt 6 :EIIRKKRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15930 # 1uj8A.21.41 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 21 :KLIESLQEN 1uj8A 42 :DMHQWICDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15931 # 1jalA.21.141 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 21 :KLIESLQEN 1jalA 142 :RAIQRLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15932 # 2d28C.22.9 read from T0287.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2d28C 10 :IVEALLER Number of specific fragments extracted= 1 number of extra gaps= 1 total=15933 # 1on2A.22.41 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 22 :LIESLQENE 1on2A 42 :MVQKLDKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15934 # 1uw4B.22.23 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 22 :LIESLQENE 1uw4B 791 :VLRQMRKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15935 # 1i58A.22.107 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 22 :LIESLQENE 1i58A 459 :IIRKAIEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15936 # 1yj7A.22.49 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1yj7A 69 :AITILNNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=15937 # 1w8iA.22.62 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 22 :LIESLQENE 1w8iA 63 :FLEGFVESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15938 # 1l0bA.22.76 read from T0287.t04.many.frag # found chain 1l0bA in template set T0287 22 :LIESLQENE 1l0bA 1665 :VIKSIQERK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15939 # 1r71A.22.26 read from T0287.t04.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)N29 (1r71A)N150 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1r71A 143 :VIENLQR T0287 30 :E 1r71A 151 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=15941 # 1r7jA.22.39 read from T0287.t04.many.frag # found chain 1r7jA in training set Warning: unaligning (T0287)E30 (1r7jA)E48 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1r7jA 40 :YIKMLMDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15942 # 1sd4A.22.29 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 22 :LIESLQENE 1sd4A 30 :IVVEIQKYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15943 # 1sflA.22.116 read from T0287.t04.many.frag # found chain 1sflA in template set Warning: unaligning (T0287)E30 (1sflA)N125 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1sflA 117 :IITHLQQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=15944 # 2ahrA.22.174 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 22 :LIESLQENE 2ahrA 172 :FIEALAKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15945 # 2fnuA.22.300 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 22 :LIESLQENE 2fnuA 301 :ILESLHKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15946 # 1oi7A.22.260 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 22 :LIESLQENE 1oi7A 261 :KLRAFAEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15947 # 1pu6A.22.50 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1pu6A 51 :SLENLKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=15948 # 1ctf.22.21 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 22 :LIESLQENE 1ctf 68 :VIKAVRGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15949 # 2b0tA.22.93 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 22 :LIESLQENE 2b0tA 94 :AIKELQDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15950 # 1szhA.22.26 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 22 :LIESLQENE 1szhA 41 :CIEIMKFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15951 # 1ci4A.22.58 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 22 :LIESLQENE 1ci4A 59 :FREWLKDTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15952 # 1r6xA.22.21 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 22 :LIESLQENE 1r6xA 23 :LLSEAQSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15953 # 1aa7A.22.23 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 22 :LIESLQENE 1aa7A 24 :IAQRLEDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15954 # 2tpt.22.6 read from T0287.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQE 2tpt 7 :IIRKKRD T0287 30 :E 2tpt 15 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=15956 # 1jr2A.22.145 read from T0287.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)E30 (1jr2A)E133 because P (beta_P) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1jr2A 125 :LAEYICSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15957 # 1nuuA.22.222 read from T0287.t04.many.frag # found chain 1nuuA in template set T0287 22 :LIESLQENE 1nuuA 223 :VITYIKDHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15958 # 2cz1A.22.24 read from T0287.t04.many.frag # found chain 2cz1A in template set T0287 22 :LIESLQENE 2cz1A 25 :LFRALDGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15959 # 2bwbA.22.9 read from T0287.t04.many.frag # found chain 2bwbA in template set T0287 22 :LIESLQENE 2bwbA 335 :QLRQLNDMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15960 # 1lvaA.22.36 read from T0287.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)E30 (1lvaA)G421 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1lvaA 413 :LLQSMAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15961 # 1uj8A.22.42 read from T0287.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1uj8A 43 :MHQWICD T0287 30 :E 1uj8A 51 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=15963 # 1jalA.22.142 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 22 :LIESLQENE 1jalA 143 :AIQRLQKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15964 # 1dc1A.22.93 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 22 :LIESLQENE 1dc1A 94 :SINNLIENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15965 # 2d28C.23.10 read from T0287.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2d28C 11 :VEALLER T0287 31 :L 2d28C 19 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=15967 # 1uw4B.23.24 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 23 :IESLQENEL 1uw4B 792 :LRQMRKLPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15968 # 1on2A.23.42 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 23 :IESLQENEL 1on2A 43 :VQKLDKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15969 # 1i58A.23.108 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1i58A 460 :IRKAIEK T0287 31 :L 1i58A 468 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15971 # 1yj7A.23.50 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1yj7A 70 :ITILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=15973 # 1l0bA.23.77 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1l0bA 1666 :IKSIQE T0287 30 :EL 1l0bA 1673 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15975 # 1w8iA.23.63 read from T0287.t04.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1w8iA 64 :LEGFVES T0287 31 :L 1w8iA 72 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15977 # 1r71A.23.27 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 23 :IESLQENEL 1r71A 144 :IENLQRNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15978 # 1sd4A.23.30 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 23 :IESLQENEL 1sd4A 31 :VVEIQKYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15979 # 1nuuA.23.223 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)N29 (1nuuA)H230 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQE 1nuuA 224 :ITYIKD T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15981 # 1pu6A.23.51 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1pu6A 52 :LENLKNA T0287 31 :L 1pu6A 60 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=15983 # 1oi7A.23.261 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)N29 (1oi7A)A268 because G (3-10) conformation "forbidden" or filtered. T0287 23 :IESLQE 1oi7A 262 :LRAFAE T0287 30 :EL 1oi7A 269 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15985 # 2ahrA.23.175 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 23 :IESLQENEL 2ahrA 173 :IEALAKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15986 # 1uj8A.23.43 read from T0287.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQE 1uj8A 44 :HQWICD T0287 30 :EL 1uj8A 51 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=15988 # 1ctf.23.22 read from T0287.t04.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQENE 1ctf 69 :IKAVRGAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=15989 # 2bwbA.23.10 read from T0287.t04.many.frag # found chain 2bwbA in template set T0287 23 :IESLQENEL 2bwbA 336 :LRQLNDMGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15990 # 1r7jA.23.40 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 23 :IESLQENEL 1r7jA 41 :IKMLMDLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15991 # 2cz1A.23.25 read from T0287.t04.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2cz1A 26 :FRALDGK T0287 31 :L 2cz1A 34 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15993 # 1sflA.23.117 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 23 :IESLQENEL 1sflA 118 :ITHLQQYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15994 # 1ci4A.23.59 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 23 :IESLQENEL 1ci4A 60 :REWLKDTCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15995 # 1jalA.23.143 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 23 :IESLQENEL 1jalA 144 :IQRLQKRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15996 # 2fnuA.23.301 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 23 :IESLQENEL 2fnuA 302 :LESLHKRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15997 # 1aa7A.23.24 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 23 :IESLQENEL 1aa7A 25 :AQRLEDVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15998 # 2hddA.23.18 read from T0287.t04.many.frag # found chain 2hddA in template set T0287 23 :IESLQENEL 2hddA 17 :KREFNENRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15999 # 2tpt.23.7 read from T0287.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 2tpt 8 :IRKKRD T0287 30 :EL 2tpt 15 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16001 # 1xg8A.23.69 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 23 :IESLQENEL 1xg8A 61 :IERIEQDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16002 # 2ak3A.23.55 read from T0287.t04.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)E30 (2ak3A)K62 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2ak3A 55 :KTFIDQG T0287 31 :L 2ak3A 63 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=16004 # 1h5uA.23.741 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 23 :IESLQENEL 1h5uA 742 :IEQLSSGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16005 # 1k3xA.23.139 read from T0287.t04.many.frag # found chain 1k3xA in training set T0287 23 :IESLQENEL 1k3xA 140 :KERLLSPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16006 # 1jkeA.23.45 read from T0287.t04.many.frag # found chain 1jkeA in training set Warning: unaligning (T0287)N29 (1jkeA)Y52 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQE 1jkeA 46 :CERVLG T0287 30 :EL 1jkeA 53 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16008 # 2d28C.24.11 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 24 :ESLQENELL 2d28C 12 :EALLERRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16009 # 1i58A.24.109 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 24 :ESLQEN 1i58A 461 :RKAIEK T0287 31 :L 1i58A 468 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=16011 # 1uw4B.24.25 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 24 :ESLQENELL 1uw4B 793 :RQMRKLPWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16012 # 1yj7A.24.51 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1yj7A 71 :TILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=16014 # 1on2A.24.43 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 24 :ESLQENELL 1on2A 44 :QKLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16015 # 1l0bA.24.78 read from T0287.t04.many.frag # found chain 1l0bA in template set T0287 24 :ESLQENELL 1l0bA 1667 :KSIQERKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16016 # 1oi7A.24.262 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1oi7A 263 :RAFAEA T0287 31 :LL 1oi7A 270 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16018 # 1pu6A.24.52 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1pu6A 53 :ENLKNA T0287 31 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16020 # 1nuuA.24.224 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1nuuA 225 :TYIKDH T0287 31 :LL 1nuuA 232 :LY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16022 # 2bwbA.24.11 read from T0287.t04.many.frag # found chain 2bwbA in template set T0287 24 :ESLQENELL 2bwbA 337 :RQLNDMGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16023 # 1r71A.24.28 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 24 :ESLQENELL 1r71A 145 :ENLQRNELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16024 # 1whsA.24.196 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1whsA 190 :EFWWNH T0287 31 :LL 1whsA 197 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16026 # 1uj8A.24.44 read from T0287.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 24 :ESLQE 1uj8A 45 :QWICD T0287 30 :ELL 1uj8A 51 :EDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16028 # 1w8iA.24.64 read from T0287.t04.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1w8iA 65 :EGFVES T0287 31 :LL 1w8iA 72 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16030 # 1r7jA.24.41 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 24 :ESLQENELL 1r7jA 42 :KMLMDLEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=16031 # 1u20A.24.186 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1u20A 187 :YALRSL T0287 31 :LL 1u20A 194 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16033 # 1ctf.24.23 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 24 :ESLQENELL 1ctf 70 :KAVRGATGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16034 # 1sd4A.24.31 read from T0287.t04.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1sd4A)V40 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1sd4A 32 :VEIQKY T0287 31 :L 1sd4A 39 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=16036 # 1jalA.24.144 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 24 :ESLQENELL 1jalA 145 :QRLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16037 # 2ak3A.24.56 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 24 :ESLQENELL 2ak3A 56 :TFIDQGKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16038 # 2cz1A.24.26 read from T0287.t04.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2cz1A 27 :RALDGK T0287 31 :LL 2cz1A 34 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16040 # 2fnuA.24.302 read from T0287.t04.many.frag # found chain 2fnuA in template set Warning: unaligning (T0287)E30 (2fnuA)G309 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2fnuA 303 :ESLHKR T0287 31 :LL 2fnuA 310 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16042 # 1ig0A.24.106 read from T0287.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0287)E30 (1ig0A)K113 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1ig0A 107 :KYYRKN T0287 31 :LL 1ig0A 114 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16044 # 2tpt.24.8 read from T0287.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 2tpt 9 :RKKRD T0287 30 :ELL 2tpt 15 :HAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16046 # 1fiuA.24.13 read from T0287.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1fiuA 14 :KKLLDG T0287 31 :LL 1fiuA 21 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16048 # 2ahrA.24.176 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 24 :ESLQENELL 2ahrA 174 :EALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16049 # 1h5uA.24.742 read from T0287.t04.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)N29 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 1h5uA 743 :EQLSS T0287 30 :ELL 1h5uA 749 :FFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16051 # 1s7zA.24.20 read from T0287.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1s7zA 20 :ENIRYD T0287 31 :LL 1s7zA 27 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16053 # 1qvzA.24.85 read from T0287.t04.many.frag # found chain 1qvzA in template set T0287 24 :ESLQENELL 1qvzA 86 :AKIKTPKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16054 # 1ci4A.24.60 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQENE 1ci4A 61 :EWLKDTC T0287 32 :L 1ci4A 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=16056 # 2d28C.25.12 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 25 :SLQENELLN 2d28C 13 :ALLERRRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16057 # 1i58A.25.110 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 1i58A 462 :KAIEK T0287 31 :LLN 1i58A 468 :LID Number of specific fragments extracted= 2 number of extra gaps= 1 total=16059 # 1whsA.25.197 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1whsA 191 :FWWNH T0287 31 :LLN 1whsA 197 :IVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16061 # 1nuuA.25.225 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1nuuA 226 :YIKDH T0287 31 :L 1nuuA 232 :L T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=16064 # 1oi7A.25.263 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 1oi7A 264 :AFAEA T0287 31 :LLN 1oi7A 270 :IPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16066 # 1pu6A.25.53 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQEN 1pu6A 54 :NLKNA T0287 31 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16068 # 1yj7A.25.52 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1yj7A)K80 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQEN 1yj7A 72 :ILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=16070 # 1u20A.25.187 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1u20A 188 :ALRSL T0287 31 :LLN 1u20A 194 :LLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16072 # 2bwbA.25.12 read from T0287.t04.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 2bwbA 338 :QLNDM T0287 31 :LLN 2bwbA 344 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16074 # 1l0bA.25.79 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1l0bA)K1673 because E (beta_S) conformation "forbidden" or filtered. T0287 25 :SLQE 1l0bA 1668 :SIQE T0287 31 :LLN 1l0bA 1674 :LLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16076 # 1uw4B.25.26 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 25 :SLQENELLN 1uw4B 794 :QMRKLPWQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16077 # 1jalA.25.145 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 25 :SLQENELLN 1jalA 146 :RLQKRAKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16078 # 2ahrA.25.177 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 T0287 25 :SLQENELL 2ahrA 175 :ALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16079 # 1fzcA.25.18 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 25 :SLQENELLN 1fzcA 129 :KVQHIQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16080 # 1on2A.25.44 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)N33 (1on2A)I53 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENELL 1on2A 45 :KLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16081 # 2ak3A.25.57 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 25 :SLQENELLN 2ak3A 57 :FIDQGKLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16082 # 1s7zA.25.21 read from T0287.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)N29 (1s7zA)D25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQE 1s7zA 21 :NIRY T0287 31 :LLN 1s7zA 27 :IRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16084 # 1hynP.25.137 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 25 :SLQENELLN 1hynP 138 :RFIFEDQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16085 # 1uj8A.25.45 read from T0287.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQE 1uj8A 46 :WICD T0287 30 :ELLN 1uj8A 51 :EDFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16087 # 1fiuA.25.14 read from T0287.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQEN 1fiuA 15 :KLLDG T0287 31 :LL 1fiuA 21 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16089 # 1h5uA.25.743 read from T0287.t04.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)N29 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQE 1h5uA 744 :QLSS T0287 30 :ELLN 1h5uA 749 :FFSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16091 # 2ao9A.25.33 read from T0287.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 25 :SLQENEL 2ao9A 34 :LLVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16092 # 1ctf.25.24 read from T0287.t04.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQENE 1ctf 71 :AVRGAT T0287 32 :LN 1ctf 78 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16094 # 1vjrA.25.68 read from T0287.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0287)E30 (1vjrA)G62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1vjrA)V65 because E (beta_S) conformation "forbidden" or filtered. T0287 25 :SLQEN 1vjrA 57 :KLRNM T0287 31 :LL 1vjrA 63 :VD Number of specific fragments extracted= 2 number of extra gaps= 2 total=16096 # 1go3F.25.39 read from T0287.t04.many.frag # found chain 1go3F in training set T0287 25 :SLQENELLN 1go3F 40 :YLQKFAKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16097 # 2hddA.25.20 read from T0287.t04.many.frag # found chain 2hddA in template set T0287 25 :SLQENELLN 2hddA 19 :EFNENRYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16098 # 2tpt.25.9 read from T0287.t04.many.frag # found chain 2tpt in template set T0287 25 :SLQENELLN 2tpt 10 :KKRDGHALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16099 # 2cz1A.25.27 read from T0287.t04.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 2cz1A 28 :ALDGK T0287 31 :LLN 2cz1A 34 :LVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16101 # 1cy5A.25.27 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1cy5A)T36 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQEN 1cy5A 28 :HMISD T0287 31 :LL 1cy5A 34 :FL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16103 # 2b8nA.25.227 read from T0287.t04.many.frag # found chain 2b8nA in template set T0287 25 :SLQENELLN 2b8nA 216 :VLEKYGIET Number of specific fragments extracted= 1 number of extra gaps= 0 total=16104 # 1whsA.26.198 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1whsA 192 :WWNH T0287 31 :LLNT 1whsA 197 :IVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16106 # 1i58A.26.111 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)N33 (1i58A)D470 because E (beta_S) conformation "forbidden" or filtered. T0287 26 :LQENELL 1i58A 463 :AIEKGLI T0287 34 :T 1i58A 471 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=16108 # 2d28C.26.13 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 26 :LQENELLNT 2d28C 14 :LLERRRLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16109 # 1u20A.26.188 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 1u20A 189 :LRSL T0287 31 :LL 1u20A 194 :LL T0287 34 :T 1u20A 197 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=16112 # 1pu6A.26.54 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQENELL 1pu6A 55 :LKNAFIL T0287 34 :T 1pu6A 63 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=16114 # 1hynP.26.138 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1hynP 139 :FIFE T0287 31 :LLNT 1hynP 144 :QIRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16116 # 1nuuA.26.226 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 26 :LQENEL 1nuuA 227 :IKDHGL T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=16118 # 1fiuA.26.15 read from T0287.t04.many.frag # found chain 1fiuA in training set T0287 26 :LQENELLNT 1fiuA 16 :LLDGNILAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16119 # 1cy5A.26.28 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1cy5A 29 :MISD T0287 31 :LLNT 1cy5A 34 :FLTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16121 # 1l0bA.26.80 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQE 1l0bA 1669 :IQE T0287 30 :ELLNT 1l0bA 1673 :KLLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16123 # 2ahrA.26.178 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 26 :LQENELL 2ahrA 176 :LAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16124 # 1yj7A.26.53 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 26 :LQEN 1yj7A 73 :LNNN T0287 31 :L 1yj7A 78 :F T0287 33 :NT 1yj7A 80 :KK Number of specific fragments extracted= 3 number of extra gaps= 2 total=16127 # 1oi7A.26.264 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1oi7A 265 :FAEA T0287 31 :LLNT 1oi7A 270 :IPVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16129 # 1fzcA.26.19 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 26 :LQENELLNT 1fzcA 130 :VQHIQLLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16130 # 2ak3A.26.58 read from T0287.t04.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)E30 (2ak3A)K62 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 2ak3A 58 :IDQG T0287 31 :LLNT 2ak3A 63 :LIPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16132 # 1jalA.26.146 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 26 :LQENELLNT 1jalA 147 :LQKRAKGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16133 # 1vfgA.26.177 read from T0287.t04.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1vfgA 178 :AVNL T0287 31 :LLNT 1vfgA 183 :LLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16135 # 2bwbA.26.13 read from T0287.t04.many.frag # found chain 2bwbA in template set T0287 26 :LQENELLNT 2bwbA 339 :LNDMGFFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16136 # 2etjA.26.211 read from T0287.t04.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 2etjA 200 :FFEK T0287 31 :LLNT 2etjA 205 :LISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16138 # 1uj8A.26.46 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 26 :LQENELLNT 1uj8A 47 :ICDLEDFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16139 # 2ao9A.26.34 read from T0287.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 26 :LQENEL 2ao9A 35 :LVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16140 # 1s7zA.26.22 read from T0287.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1s7zA 22 :IRYD T0287 31 :LLNT 1s7zA 27 :IRDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16142 # 1uw4B.26.27 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQE 1uw4B 795 :MRK T0287 30 :ELLNT 1uw4B 799 :PWQDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16144 # 1jg1A.26.27 read from T0287.t04.many.frag # found chain 1jg1A in training set Warning: unaligning (T0287)E30 (1jg1A)G32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1jg1A)R35 because G (3-10) conformation "forbidden" or filtered. T0287 26 :LQEN 1jg1A 28 :LKAE T0287 31 :LL 1jg1A 33 :II T0287 34 :T 1jg1A 36 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=16147 # 2tpt.26.10 read from T0287.t04.many.frag # found chain 2tpt in template set T0287 26 :LQENELLNT 2tpt 11 :KRDGHALSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16148 # 1go3F.26.40 read from T0287.t04.many.frag # found chain 1go3F in training set Warning: unaligning (T0287)E30 (1go3F)A45 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 1go3F 41 :LQKF T0287 31 :LLNT 1go3F 46 :KLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16150 # 1gqeA.26.40 read from T0287.t04.many.frag # found chain 1gqeA in template set T0287 26 :LQENELLNT 1gqeA 41 :LEQPDVWNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16151 # 1ctf.26.25 read from T0287.t04.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQENE 1ctf 72 :VRGAT T0287 32 :LNT 1ctf 78 :LGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16153 # 2d3dA.26.52 read from T0287.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 2d3dA 488 :LEKK T0287 31 :LL 2d3dA 493 :VL T0287 34 :T 2d3dA 496 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=16156 # 1ci4A.26.62 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 26 :LQENE 1ci4A 63 :LKDTC T0287 32 :LNT 1ci4A 69 :ANA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16158 # 1whsA.27.199 read from T0287.t04.many.frag # found chain 1whsA in template set T0287 27 :QENELLNTD 1whsA 193 :WNHGIVSDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16159 # 1hynP.27.139 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)N29 (1hynP)E142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 27 :QE 1hynP 140 :IF T0287 31 :LLNTD 1hynP 144 :QIRPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16161 # 1u20A.27.189 read from T0287.t04.many.frag # found chain 1u20A in template set T0287 27 :QENELLNTD 1u20A 190 :RSLKLLRED Number of specific fragments extracted= 1 number of extra gaps= 0 total=16162 # 1pu6A.27.55 read from T0287.t04.many.frag # found chain 1pu6A in training set T0287 27 :QENELLNTD 1pu6A 56 :KNAFILEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=16163 # 1i58A.27.112 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QENEL 1i58A 464 :IEKGL T0287 33 :NTD 1i58A 470 :DES Number of specific fragments extracted= 2 number of extra gaps= 1 total=16165 # 1cy5A.27.29 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1cy5A 30 :ISD T0287 31 :LLNTD 1cy5A 34 :FLTIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16167 # 2d28C.27.14 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 27 :QENELLNTD 2d28C 15 :LERRRLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16168 # 1u3eM.27.100 read from T0287.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1u3eM 101 :MSR T0287 31 :LLNTD 1u3eM 105 :TLNVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16170 # 1nuuA.27.227 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 27 :QEN 1nuuA 228 :KDH T0287 31 :LLN 1nuuA 232 :LYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16172 # 2etjA.27.212 read from T0287.t04.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2etjA)S207 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 2etjA 201 :FEK T0287 31 :LL 2etjA 205 :LI T0287 34 :TD 2etjA 208 :EN Number of specific fragments extracted= 3 number of extra gaps= 2 total=16175 # 1fzcA.27.20 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 27 :QENELLNTD 1fzcA 131 :QHIQLLQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16176 # 1fiuA.27.16 read from T0287.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1fiuA 17 :LDG T0287 31 :LLNTD 1fiuA 21 :ILATN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16178 # 2d3dA.27.53 read from T0287.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 2d3dA 489 :EKK T0287 31 :LL 2d3dA 493 :VL T0287 34 :TD 2d3dA 496 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=16181 # 1kicA.27.102 read from T0287.t04.many.frag # found chain 1kicA in training set T0287 27 :QENELLNTD 1kicA 91 :DDMPILNIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16182 # 2ahrA.27.179 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 27 :QENELL 2ahrA 177 :AKAGVK T0287 35 :D 2ahrA 185 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=16184 # 1l0bA.27.81 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1l0bA)S1676 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QE 1l0bA 1670 :QE T0287 30 :ELL 1l0bA 1673 :KLL T0287 34 :TD 1l0bA 1677 :VH Number of specific fragments extracted= 3 number of extra gaps= 2 total=16187 # 2ak3A.27.59 read from T0287.t04.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 27 :QE 2ak3A 59 :DQ T0287 30 :ELLNTD 2ak3A 62 :KLIPDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16189 # 1vfgA.27.178 read from T0287.t04.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1vfgA 179 :VNL T0287 31 :LLNTD 1vfgA 183 :LLKEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16191 # 1oi7A.27.265 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 27 :QENELLNTD 1oi7A 266 :AEAGIPVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16192 # 1qqfA.27.22 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 27 :QENELL 1qqfA 1032 :EQWEKF T0287 35 :D 1qqfA 1040 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=16194 # 1utg.27.42 read from T0287.t04.many.frag # found chain 1utg in training set T0287 27 :QENELLNTD 1utg 43 :KVLDSLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16195 # 1uj8A.27.47 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 27 :QENELLNTD 1uj8A 48 :CDLEDFDDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16196 # 1qvzA.27.88 read from T0287.t04.many.frag # found chain 1qvzA in template set T0287 27 :QENELLNTD 1qvzA 89 :KTPKEVNAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16197 # 1jalA.27.147 read from T0287.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QENELL 1jalA 148 :QKRAKG T0287 34 :TD 1jalA 155 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16199 # 1s7zA.27.23 read from T0287.t04.many.frag # found chain 1s7zA in template set T0287 27 :QENELLNTD 1s7zA 23 :RYDDIRDTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16200 # 1jg1A.27.28 read from T0287.t04.many.frag # found chain 1jg1A in training set Warning: unaligning (T0287)E30 (1jg1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1jg1A 29 :KAE T0287 31 :LLNTD 1jg1A 33 :IIRSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16202 # 1m40A.27.168 read from T0287.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 27 :QENELLN 1m40A 194 :LTGELLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16203 # 2ao9A.27.35 read from T0287.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 27 :QENEL 2ao9A 36 :VENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16204 # 1gqeA.27.41 read from T0287.t04.many.frag # found chain 1gqeA in template set T0287 27 :QENELLNTD 1gqeA 42 :EQPDVWNEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16205 # 1k3yA.27.105 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)N33 (1k3yA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 T0287 27 :QENELL 1k3yA 107 :LLLPVC T0287 34 :T 1k3yA 114 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=16207 # 1whsA.28.200 read from T0287.t04.many.frag # found chain 1whsA in template set T0287 28 :ENELLNTDE 1whsA 194 :NHGIVSDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16208 # 1u20A.28.190 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1u20A 191 :SL T0287 31 :LLNTDE 1u20A 194 :LLREDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16210 # 1hynP.28.140 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 1hynP 141 :FE T0287 31 :LL 1hynP 144 :QI T0287 34 :TDE 1hynP 147 :PQD Number of specific fragments extracted= 3 number of extra gaps= 2 total=16213 # 1pu6A.28.56 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (1pu6A)D64 because E (beta_S) conformation "forbidden" or filtered. T0287 28 :EN 1pu6A 57 :NA T0287 31 :LLNT 1pu6A 60 :ILEN T0287 36 :E 1pu6A 65 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=16216 # 1u3eM.28.101 read from T0287.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1u3eM 102 :SR T0287 31 :LLNTDE 1u3eM 105 :TLNVSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16218 # 2d3dA.28.54 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 28 :ENELLNTDE 2d3dA 490 :KKGVLALGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16219 # 1i58A.28.113 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :ENEL 1i58A 465 :EKGL T0287 33 :NTDE 1i58A 470 :DESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16221 # 1k3yA.28.106 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 28 :ENELLNT 1k3yA 108 :LLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=16222 # 1cy5A.28.30 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1cy5A 31 :SD T0287 31 :LLNTDE 1cy5A 34 :FLTISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16224 # 1kicA.28.103 read from T0287.t04.many.frag # found chain 1kicA in training set T0287 28 :ENELLNTDE 1kicA 92 :DMPILNIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16225 # 1qqfA.28.23 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 28 :ENELL 1qqfA 1033 :QWEKF T0287 35 :DE 1qqfA 1040 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16227 # 2etjA.28.213 read from T0287.t04.many.frag # found chain 2etjA in template set T0287 28 :ENELLNTDE 2etjA 202 :EKGLISENR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16228 # 1fzcA.28.21 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 28 :ENELLNTDE 1fzcA 132 :HIQLLQKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16229 # 2ahrA.28.180 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 28 :ENELL 2ahrA 178 :KAGVK T0287 35 :DE 2ahrA 185 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16231 # 1rr7A.28.85 read from T0287.t04.many.frag # found chain 1rr7A in template set T0287 28 :ENELLNTDE 1rr7A 86 :IWNDFNGRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16232 # 1cr1A.28.88 read from T0287.t04.many.frag # found chain 1cr1A in template set Warning: unaligning (T0287)E28 (1cr1A)R359 because L (left) conformation "forbidden" or filtered. T0287 29 :NELLNTDE 1cr1A 360 :VRLRQSDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=16233 # 1uw4B.28.29 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 28 :ENELLNTDE 1uw4B 797 :KLPWQDQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16234 # 1utg.28.43 read from T0287.t04.many.frag # found chain 1utg in training set T0287 28 :ENELLNTDE 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16235 # 1m40A.28.169 read from T0287.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 28 :ENELLN 1m40A 195 :TGELLT T0287 36 :E 1m40A 203 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=16237 # 1vfgA.28.179 read from T0287.t04.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1vfgA 180 :NL T0287 31 :LLNTDE 1vfgA 183 :LLKEAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16239 # 1gqeA.28.42 read from T0287.t04.many.frag # found chain 1gqeA in template set T0287 28 :ENELLNTDE 1gqeA 43 :QPDVWNEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16240 # 2ak3A.28.60 read from T0287.t04.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 28 :E 2ak3A 60 :Q T0287 30 :ELLNTDE 2ak3A 62 :KLIPDDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16242 # 2cwyA.28.25 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 28 :ENELLNTDE 2cwyA 26 :PYWLKATGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16243 # 1fiuA.28.17 read from T0287.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (1fiuA)N25 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 1fiuA 18 :DG T0287 31 :LLNT 1fiuA 21 :ILAT T0287 36 :E 1fiuA 26 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=16246 # 1jalA.28.148 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 28 :ENELLNTDE 1jalA 149 :KRAKGGDKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16247 # 1x2iA.28.17 read from T0287.t04.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)N33 (1x2iA)S20 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :ENELL 1x2iA 15 :GLPHV T0287 34 :TDE 1x2iA 21 :ATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16249 # 1s7zA.28.24 read from T0287.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1s7zA 24 :YD T0287 31 :LLNTDE 1s7zA 27 :IRDTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16251 # 1uj8A.28.48 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 28 :ENELLNTDE 1uj8A 49 :DLEDFDDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16252 # 2d28C.28.15 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 28 :ENELLNTDE 2d28C 16 :ERRRLKDTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16253 # 1ix9A.28.58 read from T0287.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (1ix9A)K59 T0287 29 :NELLNTDE 1ix9A 60 :LDQLPADK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16254 # 1whsA.29.201 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N29 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEK 1whsA 197 :IVSDDTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=16255 # 1hynP.29.141 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)N29 (1hynP)E142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEK 1hynP 144 :QIRPQDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16256 # 1pu6A.29.57 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (1pu6A)D64 because E (beta_S) conformation "forbidden" or filtered. T0287 29 :N 1pu6A 58 :A T0287 31 :LL 1pu6A 60 :IL T0287 34 :T 1pu6A 63 :N T0287 36 :EK 1pu6A 65 :DE Number of specific fragments extracted= 4 number of extra gaps= 3 total=16260 # 1u20A.29.191 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1u20A 192 :L T0287 31 :LL 1u20A 194 :LL T0287 34 :TDEK 1u20A 197 :EDQI Number of specific fragments extracted= 3 number of extra gaps= 2 total=16263 # 1k3yA.29.107 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 29 :NELLNT 1k3yA 109 :LPVCPP T0287 37 :K 1k3yA 117 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16265 # 1u3eM.29.102 read from T0287.t04.many.frag # found chain 1u3eM in template set T0287 29 :NELLNTDEK 1u3eM 103 :RGTLNVSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16266 # 2d3dA.29.55 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 29 :NELLNTDEK 2d3dA 491 :KGVLALGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16267 # 1cr1A.29.89 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 29 :NELLNTDEK 1cr1A 360 :VRLRQSDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16268 # 2cwyA.29.26 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 29 :NELLNTDEK 2cwyA 27 :YWLKATGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16269 # 1kicA.29.104 read from T0287.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0287)N29 (1kicA)M93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1kicA)N97 because G (3-10) conformation "forbidden" or filtered. T0287 30 :ELL 1kicA 94 :PIL T0287 34 :TDEK 1kicA 98 :IPEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=16271 # 1cy5A.29.31 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :N 1cy5A 32 :D T0287 31 :LLNTDEK 1cy5A 34 :FLTISEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16273 # 1vflA.29.330 read from T0287.t04.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)E30 (1vflA)S330 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1vflA 329 :S T0287 31 :LLNTDEK 1vflA 331 :FLPEDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16275 # 1qqfA.29.24 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 29 :NELL 1qqfA 1034 :WEKF T0287 35 :DEK 1qqfA 1040 :EKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16277 # 1ix9A.29.59 read from T0287.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)N33 (1ix9A)P64 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NELL 1ix9A 60 :LDQL T0287 34 :TDEK 1ix9A 65 :ADKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16279 # 2etjA.29.214 read from T0287.t04.many.frag # found chain 2etjA in template set T0287 29 :NELLNTDEK 2etjA 203 :KGLISENRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16280 # 1i58A.29.114 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 29 :NEL 1i58A 466 :KGL T0287 33 :NTDEK 1i58A 470 :DESKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16282 # 1yrbA.29.180 read from T0287.t04.many.frag # found chain 1yrbA in template set T0287 29 :NELLNTDEK 1yrbA 167 :VDLLSEEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16283 # 1d2tA.29.52 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 29 :NELLNTD 1d2tA 53 :RLLRNTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16284 # 1uptB.29.32 read from T0287.t04.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1uptB)P2205 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NE 1uptB 2201 :VL T0287 32 :L 1uptB 2204 :F T0287 34 :TDEK 1uptB 2206 :DDQT Number of specific fragments extracted= 3 number of extra gaps= 2 total=16287 # 1uw4B.29.30 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 29 :NELLNTDEK 1uw4B 798 :LPWQDQEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16288 # 1f74A.29.50 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 29 :NELLNTDEK 1f74A 51 :NFMLSTEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16289 # 1rr7A.29.86 read from T0287.t04.many.frag # found chain 1rr7A in template set Warning: unaligning (T0287)N33 (1rr7A)N91 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1rr7A)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :NELL 1rr7A 87 :WNDF T0287 35 :DEK 1rr7A 93 :RNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16291 # 1m40A.29.170 read from T0287.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)N29 (1m40A)G196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1m40A)T200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 30 :ELL 1m40A 197 :ELL T0287 36 :EK 1m40A 203 :SR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16293 # 1fzcA.29.22 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 29 :NELLNTDEK 1fzcA 133 :IQLLQKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16294 # 1x2iA.29.18 read from T0287.t04.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)L31 (1x2iA)H18 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :NE 1x2iA 16 :LP T0287 32 :LNTDEK 1x2iA 19 :VSATLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16296 # 1u61A.29.64 read from T0287.t04.many.frag # found chain 1u61A in template set Warning: unaligning (T0287)E30 (1u61A)A63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u61A)T66 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1u61A 62 :T T0287 31 :LL 1u61A 64 :FL T0287 34 :TDEK 1u61A 67 :EEEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=16299 # 1y0nA.29.6 read from T0287.t04.many.frag # found chain 1y0nA in template set T0287 29 :NELLNTDEK 1y0nA 5 :HDLLEADTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16300 # 1vfgA.29.180 read from T0287.t04.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)N33 (1vfgA)K185 because G (3-10) conformation "forbidden" or filtered. T0287 29 :NELL 1vfgA 181 :LGLL T0287 34 :TDEK 1vfgA 186 :EAPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16302 # 1gqeA.29.43 read from T0287.t04.many.frag # found chain 1gqeA in template set T0287 29 :NELLNTDEK 1gqeA 44 :PDVWNEPER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16303 # 1jalA.29.149 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 29 :NELLNTDEK 1jalA 150 :RAKGGDKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16304 # 1hynP.30.142 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1hynP 144 :QIRPQDRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16305 # 2cwyA.30.27 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 30 :ELLNTDEKK 2cwyA 28 :WLKATGEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16306 # 1k3yA.30.108 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 30 :ELLNT 1k3yA 110 :PVCPP T0287 37 :KK 1k3yA 117 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16308 # 1whsA.30.202 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1whsA)S199 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1whsA 197 :IV T0287 34 :TDEKK 1whsA 200 :DDTYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16310 # 1u3eM.30.103 read from T0287.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u3eM)N107 because E (beta_S) conformation "forbidden" or filtered. T0287 31 :LL 1u3eM 105 :TL T0287 34 :TDEKK 1u3eM 108 :VSKAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=16312 # 1u20A.30.192 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1u20A 193 :KLL T0287 34 :TDEKK 1u20A 197 :EDQIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16314 # 1pu6A.30.58 read from T0287.t04.many.frag # found chain 1pu6A in training set T0287 30 :ELLNTDEKK 1pu6A 59 :FILENDDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16315 # 1cr1A.30.90 read from T0287.t04.many.frag # found chain 1cr1A in template set Warning: unaligning (T0287)N33 (1cr1A)Q364 because G (3-10) conformation "forbidden" or filtered. T0287 30 :ELL 1cr1A 361 :RLR T0287 34 :TDEKK 1cr1A 365 :SDSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16317 # 2d3dA.30.56 read from T0287.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 2d3dA 493 :VLALGARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16318 # 1vflA.30.331 read from T0287.t04.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)E30 (1vflA)S330 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1vflA 331 :FLPEDEKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16319 # 1qqfA.30.25 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 30 :ELL 1qqfA 1035 :EKF T0287 35 :DEKK 1qqfA 1040 :EKRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16321 # 1yrbA.30.181 read from T0287.t04.many.frag # found chain 1yrbA in template set T0287 30 :ELLNTDEKK 1yrbA 168 :DLLSEEEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16322 # 1ix9A.30.60 read from T0287.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)N33 (1ix9A)P64 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1ix9A 61 :DQL T0287 34 :TDEKK 1ix9A 65 :ADKKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16324 # 1kicA.30.105 read from T0287.t04.many.frag # found chain 1kicA in training set T0287 30 :ELLNTDEKK 1kicA 94 :PILNIPENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16325 # 1uptB.30.33 read from T0287.t04.many.frag # found chain 1uptB in training set T0287 30 :ELLNTDEKK 1uptB 2202 :LKFPDDQTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16326 # 1d2tA.30.53 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 30 :ELLNTD 1d2tA 54 :LLRNTE T0287 38 :K 1d2tA 62 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16328 # 1w33A.30.116 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 30 :ELLNTDEKK 1w33A 186 :ENLSQEESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16329 # 1f74A.30.51 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 30 :ELLNTDEKK 1f74A 52 :FMLSTEEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16330 # 1e9rA.30.195 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N33 (1e9rA)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 30 :ELL 1e9rA 266 :LFA T0287 34 :TDEKK 1e9rA 270 :SNEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16332 # 1cy5A.30.32 read from T0287.t04.many.frag # found chain 1cy5A in training set T0287 30 :ELLNTDEKK 1cy5A 33 :GFLTISEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16333 # 1uw4B.30.31 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1uw4B 799 :PWQ T0287 34 :TDEKK 1uw4B 803 :QEVKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16335 # 1jalA.30.150 read from T0287.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 30 :ELL 1jalA 151 :AKG T0287 34 :TDEKK 1jalA 155 :DKEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16337 # 1g73A.30.66 read from T0287.t04.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)E30 (1g73A)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 31 :LLN 1g73A 68 :KMN T0287 35 :DEKK 1g73A 72 :EEED Number of specific fragments extracted= 2 number of extra gaps= 2 total=16339 # 1u7kA.30.60 read from T0287.t04.many.frag # found chain 1u7kA in template set T0287 30 :ELLNTDEKK 1u7kA 61 :TLLTGEEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16340 # 1y0nA.30.7 read from T0287.t04.many.frag # found chain 1y0nA in template set T0287 30 :ELLNTDEKK 1y0nA 6 :DLLEADTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16341 # 2etjA.30.215 read from T0287.t04.many.frag # found chain 2etjA in template set T0287 30 :ELLNTDEKK 2etjA 204 :GLISENRFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16342 # 1uslA.30.138 read from T0287.t04.many.frag # found chain 1uslA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1uslA)W132 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1uslA)W132 Warning: unaligning (T0287)N33 (1uslA)K134 because L (left) conformation "forbidden" or filtered. T0287 32 :L 1uslA 133 :S T0287 34 :TDEKK 1uslA 135 :AQRHQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=16344 # 1u84A.30.39 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 30 :ELLNTDEKK 1u84A 37 :AVYETEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16345 # 2ahmA.30.42 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 30 :ELLNTDEKK 2ahmA 43 :DILLAKDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16346 # 1ydiA.30.185 read from T0287.t04.many.frag # found chain 1ydiA in template set T0287 30 :ELLNTDEKK 1ydiA 181 :ELTHQEHRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16347 # 2cwyA.31.28 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 31 :LLNT 2cwyA 29 :LKAT T0287 36 :EKKK 2cwyA 34 :EERR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16349 # 1hynP.31.143 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 31 :LLNTDEKKK 1hynP 144 :QIRPQDREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16350 # 1k3yA.31.109 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 31 :LLNT 1k3yA 111 :VCPP T0287 37 :KKK 1k3yA 117 :KDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16352 # 2d3dA.31.57 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 31 :LLNTDEKKK 2d3dA 493 :VLALGARRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16353 # 1cr1A.31.91 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 31 :LLNTDEKKK 1cr1A 362 :LRQSDSLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16354 # 1qqfA.31.26 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 31 :LL 1qqfA 1036 :KF T0287 35 :DEKKK 1qqfA 1040 :EKRQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16356 # 1u3eM.31.104 read from T0287.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)N33 (1u3eM)N107 because E (beta_S) conformation "forbidden" or filtered. T0287 31 :LL 1u3eM 105 :TL T0287 34 :TDEKKK 1u3eM 108 :VSKAQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16358 # 1w33A.31.117 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 31 :LLNTDEKKK 1w33A 187 :NLSQEESKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16359 # 1whsA.31.203 read from T0287.t04.many.frag # found chain 1whsA in template set T0287 31 :LLNTDEKKK 1whsA 197 :IVSDDTYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16360 # 1u20A.31.193 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1u20A 194 :LL T0287 34 :TDEKKK 1u20A 197 :EDQIQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16362 # 1b4fA.31.53 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 31 :LLNTDEKKK 1b4fA 54 :VTLAGHQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16363 # 1vflA.31.332 read from T0287.t04.many.frag # found chain 1vflA in template set T0287 31 :LLNTDEKKK 1vflA 331 :FLPEDEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16364 # 1uptB.31.34 read from T0287.t04.many.frag # found chain 1uptB in training set T0287 31 :LLNTDEKKK 1uptB 2203 :KFPDDQTQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16365 # 1yrbA.31.182 read from T0287.t04.many.frag # found chain 1yrbA in template set T0287 31 :LLNTDEKKK 1yrbA 169 :LLSEEEKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16366 # 1ix9A.31.61 read from T0287.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)N33 (1ix9A)P64 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1ix9A 62 :QL T0287 34 :TDEKKK 1ix9A 65 :ADKKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16368 # 1e9rA.31.196 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 31 :LLNTDEKKK 1e9rA 267 :FAGSNEASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16369 # 1u84A.31.40 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 31 :LLNTDEKKK 1u84A 38 :VYETEDART Number of specific fragments extracted= 1 number of extra gaps= 0 total=16370 # 1d2tA.31.54 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 31 :LLNTD 1d2tA 55 :LRNTE T0287 38 :KK 1d2tA 62 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16372 # 1pu6A.31.59 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEKKK 1pu6A 63 :NDDEIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16374 # 1g73A.31.67 read from T0287.t04.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 31 :LLN 1g73A 68 :KMN T0287 35 :DEKKK 1g73A 72 :EEEDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16376 # 1oi7A.31.269 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 31 :LLNTDEKKK 1oi7A 270 :IPVADTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16377 # 1u7kA.31.61 read from T0287.t04.many.frag # found chain 1u7kA in template set T0287 31 :LLNTDEKKK 1u7kA 62 :LLTGEEKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16378 # 1f74A.31.52 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 31 :LLNTDEKKK 1f74A 53 :MLSTEEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16379 # 1uw4B.31.32 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 31 :LLNTDEKKK 1uw4B 800 :WQDQEVKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16380 # 1vpmA.31.141 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 31 :LLNTDEKKK 1vpmA 130 :EPQTEEEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16381 # 1jalA.31.151 read from T0287.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LL 1jalA 152 :KG T0287 34 :TDEKKK 1jalA 155 :DKEAKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16383 # 1kicA.31.106 read from T0287.t04.many.frag # found chain 1kicA in training set T0287 31 :LLNTDEKKK 1kicA 95 :ILNIPENVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16384 # 1no4A.31.17 read from T0287.t04.many.frag # found chain 1no4A in template set T0287 31 :LLNTDEKKK 1no4A 19 :ELAQSERTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16385 # 2ahmA.31.43 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 31 :LLNTDEKKK 2ahmA 44 :ILLAKDTTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16386 # 1x2iA.31.20 read from T0287.t04.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)L31 (1x2iA)H18 because T (delta_L) conformation "forbidden" or filtered. T0287 32 :LNTDEKKK 1x2iA 19 :VSATLARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16387 # 2cwyA.32.29 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :L 2cwyA 30 :K T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKI 2cwyA 34 :EERRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=16390 # 1qqfA.32.27 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 32 :L 1qqfA 1037 :F T0287 35 :DEKKKI 1qqfA 1040 :EKRQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16392 # 1b4fA.32.54 read from T0287.t04.many.frag # found chain 1b4fA in template set Warning: unaligning (T0287)N33 (1b4fA)L56 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1b4fA 55 :T T0287 34 :TDEKKKI 1b4fA 57 :AGHQKKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16394 # 1cr1A.32.92 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 32 :LNTDEKKKI 1cr1A 363 :RQSDSLKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16395 # 1k3yA.32.110 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)N33 (1k3yA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 32 :L 1k3yA 112 :C T0287 34 :T 1k3yA 114 :P T0287 37 :KKKI 1k3yA 117 :KDAK Number of specific fragments extracted= 3 number of extra gaps= 2 total=16398 # 2d3dA.32.58 read from T0287.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 2d3dA 494 :L T0287 34 :TDEKKKI 2d3dA 496 :LGARRKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16400 # 1w33A.32.118 read from T0287.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N33 (1w33A)S189 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1w33A 188 :L T0287 34 :TDEKKKI 1w33A 190 :QEESKSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16402 # 1uptB.32.35 read from T0287.t04.many.frag # found chain 1uptB in training set T0287 32 :LNTDEKKKI 1uptB 2204 :FPDDQTQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16403 # 1u84A.32.41 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 32 :LNTDEKKKI 1u84A 39 :YETEDARTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16404 # 1hynP.32.144 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 32 :LNTDEKKKI 1hynP 145 :IRPQDREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16405 # 1vpmA.32.142 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 32 :LNTDEKKKI 1vpmA 131 :PQTEEEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16406 # 1s2xA.32.46 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 32 :LNTD 1s2xA 40 :KDSN T0287 39 :KI 1s2xA 47 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16408 # 1vflA.32.333 read from T0287.t04.many.frag # found chain 1vflA in template set T0287 32 :LNTDEKKKI 1vflA 332 :LPEDEKKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16409 # 1jalA.32.152 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 32 :LNTDEKKKI 1jalA 153 :GGDKEAKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16410 # 1d2tA.32.55 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 32 :LNTD 1d2tA 56 :RNTE T0287 38 :KKI 1d2tA 62 :KLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16412 # 1g73A.32.68 read from T0287.t04.many.frag # found chain 1g73A in template set T0287 32 :LNTDEKKKI 1g73A 69 :MNSEEEDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16413 # 2ex0A.32.247 read from T0287.t04.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)N33 (2ex0A)N273 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E36 (2ex0A)V276 because N (gamma') conformation "forbidden" or filtered. T0287 32 :L 2ex0A 272 :G T0287 34 :TD 2ex0A 274 :TD T0287 37 :KKKI 2ex0A 277 :REYY Number of specific fragments extracted= 3 number of extra gaps= 2 total=16416 # 1oi7A.32.270 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 32 :LNTDEKKKI 1oi7A 271 :PVADTIDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16417 # 1u3eM.32.105 read from T0287.t04.many.frag # found chain 1u3eM in template set T0287 32 :LNTDEKKKI 1u3eM 106 :LNVSKAQQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16418 # 1uw4B.32.33 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 32 :LNTDEKKKI 1uw4B 801 :QDQEVKDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16419 # 1ix9A.32.62 read from T0287.t04.many.frag # found chain 1ix9A in training set T0287 32 :LNTDEKKKI 1ix9A 63 :LPADKKTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16420 # 1bo1A.32.251 read from T0287.t04.many.frag # found chain 1bo1A in template set Warning: unaligning (T0287)N33 (1bo1A)G253 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :L 1bo1A 252 :V T0287 34 :TDEKKKI 1bo1A 254 :EESKKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16422 # 1e9rA.32.197 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N33 (1e9rA)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 32 :L 1e9rA 268 :A T0287 34 :TDEKKKI 1e9rA 270 :SNEASKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16424 # 1yrbA.32.183 read from T0287.t04.many.frag # found chain 1yrbA in template set Warning: unaligning (T0287)N33 (1yrbA)S171 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1yrbA 170 :L T0287 34 :TDEKKKI 1yrbA 172 :EEEKERH Number of specific fragments extracted= 2 number of extra gaps= 1 total=16426 # 1u7kA.32.62 read from T0287.t04.many.frag # found chain 1u7kA in template set T0287 32 :LNTDEKKKI 1u7kA 63 :LTGEEKQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16427 # 1xsvA.32.24 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 32 :LNTDEKKKI 1xsvA 22 :LLTNKQRNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16428 # 1szqA.32.450 read from T0287.t04.many.frag # found chain 1szqA in template set T0287 32 :LNTDEKKKI 1szqA 451 :FPTRQQQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16429 # 1orjA.32.43 read from T0287.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)E1045 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKI 1orjA 1046 :LEKRKEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=16430 # 1u20A.32.194 read from T0287.t04.many.frag # found chain 1u20A in template set T0287 32 :LNTDEKKKI 1u20A 195 :LREDQIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16431 # 2b0tA.32.111 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 32 :LNTDEKKKI 2b0tA 112 :ATTDEEKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16432 # 2cwyA.33.30 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 33 :NT 2cwyA 31 :AT T0287 36 :EKKKII 2cwyA 34 :EERRLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16434 # 1b4fA.33.55 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 33 :NTDEKKKII 1b4fA 56 :LAGHQKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16435 # 1qqfA.33.28 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKII 1qqfA 1040 :EKRQEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16436 # 1bo1A.33.252 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 33 :NTDEKKKII 1bo1A 253 :GEESKKNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16437 # 1u84A.33.42 read from T0287.t04.many.frag # found chain 1u84A in training set Warning: unaligning (T0287)E36 (1u84A)D43 because E (beta_S) conformation "forbidden" or filtered. T0287 33 :NTD 1u84A 40 :ETE T0287 37 :KKKII 1u84A 44 :ARTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16439 # 1vpmA.33.143 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 33 :NTDEKKKII 1vpmA 132 :QTEEEKRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16440 # 1s2xA.33.47 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 33 :NTD 1s2xA 41 :DSN T0287 39 :KII 1s2xA 47 :DFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16442 # 1w33A.33.119 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 33 :NTDEKKKII 1w33A 189 :SQEESKSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16443 # 2d3dA.33.59 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 33 :NTDEKKKII 2d3dA 495 :ALGARRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16444 # 1cr1A.33.93 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 33 :NTDEKKKII 1cr1A 364 :QSDSLKREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16445 # 1k3yA.33.111 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 33 :NT 1k3yA 113 :PP T0287 37 :KKKII 1k3yA 117 :KDAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16447 # 1uptB.33.36 read from T0287.t04.many.frag # found chain 1uptB in training set T0287 33 :NTDEKKKII 1uptB 2205 :PDDQTQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16448 # 1orjA.33.44 read from T0287.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKII 1orjA 1046 :LEKRKEFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16449 # 1x2iA.33.22 read from T0287.t04.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)N33 (1x2iA)S20 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1x2iA 21 :ATLARRLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16450 # 1g73A.33.69 read from T0287.t04.many.frag # found chain 1g73A in template set T0287 33 :NTDEKKKII 1g73A 70 :NSEEEDEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=16451 # 1hynP.33.145 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 33 :NTDEKKKII 1hynP 146 :RPQDREELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16452 # 1jfmA.33.131 read from T0287.t04.many.frag # found chain 1jfmA in template set Warning: unaligning (T0287)T34 (1jfmA)N133 because Y (epsilon') conformation "forbidden" or filtered. T0287 33 :N 1jfmA 132 :A T0287 35 :DEKKKII 1jfmA 134 :DESGVIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=16454 # 1jalA.33.153 read from T0287.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1jalA 155 :DKEAKFEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16455 # 1uw4B.33.34 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 33 :NTDEKKKII 1uw4B 802 :DQEVKDYVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16456 # 1szqA.33.451 read from T0287.t04.many.frag # found chain 1szqA in template set Warning: unaligning (T0287)N33 (1szqA)P452 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1szqA 453 :TRQQQRIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16457 # 1zroA.33.416 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 33 :NTDEKKKII 1zroA 417 :NDLSNRKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16458 # 1y0nA.33.10 read from T0287.t04.many.frag # found chain 1y0nA in template set T0287 33 :NTDEKKKII 1y0nA 9 :EADTLNNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16459 # 2ex0A.33.248 read from T0287.t04.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)N33 (2ex0A)N273 because L (left) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 2ex0A 274 :TDVREYYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16460 # 1u7kA.33.63 read from T0287.t04.many.frag # found chain 1u7kA in template set T0287 33 :NTDEKKKII 1u7kA 64 :TGEEKQRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16461 # 1ct5A.33.6 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 33 :NTDEKKKII 1ct5A 8 :DEDRKTQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16462 # 1oi7A.33.271 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 33 :NTDEKKKII 1oi7A 272 :VADTIDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16463 # 1ykhA.33.42 read from T0287.t04.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1ykhA)P141 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKII 1ykhA 142 :DMYERKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16464 # 1vflA.33.334 read from T0287.t04.many.frag # found chain 1vflA in template set T0287 33 :NTDEKKKII 1vflA 333 :PEDEKKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16465 # 1usyA.33.142 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 33 :NTDEKKKII 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16466 # 1d2tA.33.56 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 33 :NTD 1d2tA 57 :NTE T0287 38 :KKII 1d2tA 62 :KLAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16468 # 2cwyA.34.31 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKIID 2cwyA 34 :EERRLLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16470 # 1s2xA.34.48 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 34 :TDE 1s2xA 42 :SND T0287 39 :KIID 1s2xA 47 :DFLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16472 # 1b4fA.34.56 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 34 :TDEKKKIID 1b4fA 57 :AGHQKKILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16473 # 1bo1A.34.253 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 34 :TDEKKKIID 1bo1A 254 :EESKKNFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16474 # 1qqfA.34.29 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKIID 1qqfA 1040 :EKRQEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16475 # 1vpmA.34.144 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 34 :TDEKKKIID 1vpmA 133 :TEEEKRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16476 # 1w33A.34.120 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 34 :TDEKKKIID 1w33A 190 :QEESKSLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16477 # 1u84A.34.43 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 34 :TDEKKKIID 1u84A 41 :TEDARTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16478 # 1jfmA.34.132 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 34 :TDEKKKIID 1jfmA 133 :NDESGVIMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16479 # 1orjA.34.45 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 34 :TDEKKKIID 1orjA 1046 :LEKRKEFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16480 # 2d3dA.34.60 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 34 :TDEKKKIID 2d3dA 496 :LGARRKLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16481 # 1qgoA.34.86 read from T0287.t04.many.frag # found chain 1qgoA in template set T0287 34 :TDEKKKIID 1qgoA 87 :GDEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16482 # 1oi7A.34.272 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 34 :TDEKKKIID 1oi7A 273 :ADTIDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16483 # 1vliA.34.265 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 34 :TDEKKKIID 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16484 # 1cr1A.34.94 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 34 :TDEKKKIID 1cr1A 365 :SDSLKREII Number of specific fragments extracted= 1 number of extra gaps= 0 total=16485 # 1ct5A.34.7 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 34 :TDEKKKIID 1ct5A 9 :EDRKTQLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16486 # 1yvrA.34.237 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 34 :TDEKKKIID 1yvrA 238 :TKDELEIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16487 # 1g73A.34.70 read from T0287.t04.many.frag # found chain 1g73A in template set T0287 34 :TDEKKKIID 1g73A 71 :SEEEDEVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16488 # 3fapB.34.22 read from T0287.t04.many.frag # found chain 3fapB in template set T0287 34 :TDEKKKIID 3fapB 130 :ERNVKGMFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16489 # 1i60A.34.75 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 34 :TDEKKKIID 1i60A 76 :EKGHNEIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16490 # 1y0nA.34.11 read from T0287.t04.many.frag # found chain 1y0nA in template set T0287 34 :TDEKKKIID 1y0nA 10 :ADTLNNLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16491 # 2jdxA.34.79 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 34 :TDEKKKIID 2jdxA 117 :KDHLKKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16492 # 1zroA.34.417 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 34 :TDEKKKIID 1zroA 418 :DLSNRKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16493 # 1x2iA.34.23 read from T0287.t04.many.frag # found chain 1x2iA in template set T0287 34 :TDEKKKIID 1x2iA 21 :ATLARRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16494 # 1j5sA.34.216 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 34 :TDEKKKIID 1j5sA 205 :TSTLDGFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16495 # 1fzcA.34.27 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 34 :TDEKKKIID 1fzcA 138 :KNVRAQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16496 # 1ykhA.34.43 read from T0287.t04.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKIID 1ykhA 142 :DMYERKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16497 # 2c5rA.34.35 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)E36 (2c5rA)S100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 34 :TD 2c5rA 98 :LQ T0287 39 :KIID 2c5rA 103 :EVLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16499 # 2f6kA.34.62 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 34 :TDEKKKIID 2f6kA 63 :FGDKAETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16500 # 1y8aA.34.189 read from T0287.t04.many.frag # found chain 1y8aA in training set T0287 34 :TDEKKKIID 1y8aA 168 :RSEVRKIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16501 # 2cwyA.35.32 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 35 :DEKKKIIDQ 2cwyA 33 :GEERRLLQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16502 # 1b4fA.35.57 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 35 :DEKKKIIDQ 1b4fA 58 :GHQKKILNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16503 # 1s2xA.35.49 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 35 :D 1s2xA 43 :N T0287 39 :KIIDQ 1s2xA 47 :DFLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16505 # 1bo1A.35.254 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 35 :DEKKKIIDQ 1bo1A 255 :ESKKNFLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16506 # 1w33A.35.121 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 35 :DEKKKIIDQ 1w33A 191 :EESKSLLMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16507 # 1jfmA.35.133 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 35 :DEKKKIIDQ 1jfmA 134 :DESGVIMNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16508 # 1qqfA.35.30 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 35 :DEKKKIIDQ 1qqfA 1040 :EKRQEALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16509 # 1qgoA.35.87 read from T0287.t04.many.frag # found chain 1qgoA in template set T0287 35 :DEKKKIIDQ 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16510 # 2d3dA.35.61 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 35 :DEKKKIIDQ 2d3dA 497 :GARRKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16511 # 1vliA.35.266 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 35 :DEKKKIIDQ 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16512 # 1u84A.35.44 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 35 :DEKKKIIDQ 1u84A 42 :EDARTLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16513 # 1orjA.35.46 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 35 :DEKKKIIDQ 1orjA 1047 :EKRKEFVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16514 # 1oi7A.35.273 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 35 :DEKKKIIDQ 1oi7A 274 :DTIDEIVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16515 # 1i60A.35.76 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 35 :DEKKKIIDQ 1i60A 77 :KGHNEIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16516 # 1vpmA.35.145 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 35 :DEKKKIIDQ 1vpmA 134 :EEEKRLYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=16517 # 3fapB.35.23 read from T0287.t04.many.frag # found chain 3fapB in template set T0287 35 :DEKKKIIDQ 3fapB 131 :RNVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16518 # 1yvrA.35.238 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 35 :DEKKKIIDQ 1yvrA 239 :KDELEIIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16519 # 2c5rA.35.36 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 35 :DE 2c5rA 99 :QS T0287 39 :KIIDQ 2c5rA 103 :EVLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16521 # 2jdxA.35.80 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 35 :DEKKKIIDQ 2jdxA 118 :DHLKKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16522 # 1fviA.35.102 read from T0287.t04.many.frag # found chain 1fviA in template set T0287 35 :DEKKKIIDQ 1fviA 104 :DPLKKYIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16523 # 1ct5A.35.8 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 35 :DEKKKIIDQ 1ct5A 10 :DRKTQLIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16524 # 1zroA.35.418 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 35 :DEKKKIIDQ 1zroA 419 :LSNRKLVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16525 # 1j5sA.35.217 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 35 :DEKKKIIDQ 1j5sA 206 :STLDGFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16526 # 1fzcA.35.28 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 35 :DEKKKIIDQ 1fzcA 139 :NVRAQLVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16527 # 1p4xA.35.98 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 35 :DEKKKIIDQ 1p4xA 99 :EQREKIAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16528 # 1qf5A.35.180 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 35 :DEKKKIIDQ 1qf5A 181 :VDYQKVLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16529 # 1x2iA.35.24 read from T0287.t04.many.frag # found chain 1x2iA in template set T0287 35 :DEKKKIIDQ 1x2iA 22 :TLARRLLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16530 # 1w2yA.35.123 read from T0287.t04.many.frag # found chain 1w2yA in training set T0287 35 :DEKKKIIDQ 1w2yA 124 :GDIYGILND Number of specific fragments extracted= 1 number of extra gaps= 0 total=16531 # 256bA.35.20 read from T0287.t04.many.frag # found chain 256bA in training set Warning: unaligning (T0287)E36 (256bA)N22 because Y (epsilon') conformation "forbidden" or filtered. T0287 35 :D 256bA 21 :D T0287 37 :KKKIIDQ 256bA 23 :AAQVKDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16533 # 1g73A.35.71 read from T0287.t04.many.frag # found chain 1g73A in template set T0287 35 :DEKKKIIDQ 1g73A 72 :EEEDEVWQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16534 # 1b4fA.36.58 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 36 :EKKKIIDQI 1b4fA 59 :HQKKILNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16535 # 2cwyA.36.33 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 36 :EKKKIIDQI 2cwyA 34 :EERRLLQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16536 # 1s2xA.36.50 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQI 1s2xA 47 :DFLRRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16537 # 1w33A.36.122 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 36 :EKKKIIDQI 1w33A 192 :ESKSLLMQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16538 # 1vliA.36.267 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 36 :EKKKIIDQI 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16539 # 1bo1A.36.255 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 36 :EKKKIIDQI 1bo1A 256 :SKKNFLEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16540 # 1qqfA.36.31 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 36 :EKKKIIDQI 1qqfA 1041 :KRQEALELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16541 # 1qgoA.36.88 read from T0287.t04.many.frag # found chain 1qgoA in template set T0287 36 :EKKKIIDQI 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16542 # 3fapB.36.24 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16543 # 1jfmA.36.134 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 36 :EKKKIIDQI 1jfmA 135 :ESGVIMNKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=16544 # 1oi7A.36.274 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 36 :EKKKIIDQI 1oi7A 275 :TIDEIVELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16545 # 1i60A.36.77 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 36 :EKKKIIDQI 1i60A 78 :GHNEIITEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16546 # 1qf5A.36.181 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 36 :EKKKIIDQI 1qf5A 182 :DYQKVLDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16547 # 1yvrA.36.239 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 36 :EKKKIIDQI 1yvrA 240 :DELEIIHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16548 # 1fviA.36.103 read from T0287.t04.many.frag # found chain 1fviA in template set T0287 36 :EKKKIIDQI 1fviA 105 :PLKKYIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16549 # 1j5sA.36.218 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 36 :EKKKIIDQI 1j5sA 207 :TLDGFLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16550 # 2d3dA.36.62 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 36 :EKKKIIDQI 2d3dA 498 :ARRKLLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16551 # 1vpmA.36.146 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 36 :EKKKIIDQI 1vpmA 135 :EEKRLYETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16552 # 1zroA.36.419 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 36 :EKKKIIDQI 1zroA 420 :SNRKLVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16553 # 1w2yA.36.124 read from T0287.t04.many.frag # found chain 1w2yA in training set T0287 36 :EKKKIIDQI 1w2yA 125 :DIYGILNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16554 # 2jdxA.36.81 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 36 :EKKKIIDQI 2jdxA 119 :HLKKAVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16555 # 2c5rA.36.37 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 36 :E 2c5rA 100 :S T0287 39 :KIIDQI 2c5rA 103 :EVLNYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16557 # 1u84A.36.45 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 36 :EKKKIIDQI 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16558 # 1y8aA.36.191 read from T0287.t04.many.frag # found chain 1y8aA in training set T0287 36 :EKKKIIDQI 1y8aA 170 :EVRKIVESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16559 # 1fzcA.36.29 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 36 :EKKKIIDQI 1fzcA 140 :VRAQLVDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16560 # 1orjA.36.47 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 36 :EKKKIIDQI 1orjA 1048 :KRKEFVENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16561 # 1nekA.36.478 read from T0287.t04.many.frag # found chain 1nekA in template set T0287 36 :EKKKIIDQI 1nekA 479 :AMAKGLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16562 # 1ct5A.36.9 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 36 :EKKKIIDQI 1ct5A 11 :RKTQLIAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16563 # 1bkrA.36.90 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 36 :EKKKIIDQI 1bkrA 91 :DEKSIITYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16564 # 1go3F.36.50 read from T0287.t04.many.frag # found chain 1go3F in training set T0287 36 :EKKKIIDQI 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16565 # 1b4fA.37.59 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 37 :KKKIIDQIK 1b4fA 60 :QKKILNSIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16566 # 1w33A.37.123 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 37 :KKKIIDQIK 1w33A 193 :SKSLLMQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16567 # 1s2xA.37.51 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIK 1s2xA 47 :DFLRRVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16568 # 2cwyA.37.34 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 37 :KKKIIDQIK 2cwyA 35 :ERRLLQGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16569 # 1vliA.37.268 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 37 :KKKIIDQIK 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16570 # 3fapB.37.25 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 T0287 37 :KKKIIDQ 3fapB 133 :VKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16571 # 1i60A.37.78 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 37 :KKKIIDQIK 1i60A 79 :HNEIITEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16572 # 1bo1A.37.256 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 37 :KKKIIDQIK 1bo1A 257 :KKNFLEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16573 # 1qf5A.37.182 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 37 :KKKIIDQIK 1qf5A 183 :YQKVLDDTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16574 # 1jfmA.37.135 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 37 :KKKIIDQIK 1jfmA 136 :SGVIMNKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16575 # 2c5rA.37.38 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIK 2c5rA 103 :EVLNYIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16576 # 1qgoA.37.89 read from T0287.t04.many.frag # found chain 1qgoA in template set T0287 37 :KKKIIDQIK 1qgoA 90 :YEKIVREVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16577 # 1j5sA.37.219 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 37 :KKKIIDQIK 1j5sA 208 :LDGFLNALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=16578 # 1qqfA.37.32 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 37 :KKKIIDQIK 1qqfA 1042 :RQEALELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16579 # 1fzcA.37.30 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 37 :KKKIIDQIK 1fzcA 141 :RAQLVDMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16580 # 1fviA.37.104 read from T0287.t04.many.frag # found chain 1fviA in template set Warning: unaligning (T0287)K38 (1fviA)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 37 :K 1fviA 106 :L T0287 39 :KIIDQIK 1fviA 108 :KYIDRVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16582 # 256bA.37.22 read from T0287.t04.many.frag # found chain 256bA in training set T0287 37 :KKKIIDQIK 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16583 # 1hx1B.37.19 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 37 :KKKIIDQIK 1hx1B 169 :VEKIADQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16584 # 2d3dA.37.63 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 37 :KKKIIDQIK 2d3dA 499 :RRKLLKAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16585 # 1w2yA.37.125 read from T0287.t04.many.frag # found chain 1w2yA in training set T0287 37 :KKKIIDQIK 1w2yA 126 :IYGILNDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16586 # 1nekA.37.479 read from T0287.t04.many.frag # found chain 1nekA in template set T0287 37 :KKKIIDQIK 1nekA 480 :MAKGLEQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16587 # 2jdxA.37.82 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 37 :KKKIIDQIK 2jdxA 120 :LKKAVAEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16588 # 1qoyA.37.180 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 37 :KKKIIDQIK 1qoyA 166 :FQSQVDKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16589 # 1orjA.37.48 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 37 :KKKIIDQIK 1orjA 1049 :RKEFVENID Number of specific fragments extracted= 1 number of extra gaps= 0 total=16590 # 1nt2B.37.73 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 37 :KKKIIDQIK 1nt2B 85 :DRYVVALVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16591 # 1p4xA.37.100 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 37 :KKKIIDQIK 1p4xA 101 :REKIAERVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16592 # 1bkrA.37.91 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 37 :KKKIIDQIK 1bkrA 92 :EKSIITYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16593 # 1zroA.37.420 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 37 :KKKIIDQIK 1zroA 421 :NRKLVGKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16594 # 1oi7A.37.275 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 37 :KKKIIDQIK 1oi7A 276 :IDEIVELVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16595 # 1yvrA.37.240 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 37 :KKKIIDQIK 1yvrA 241 :ELEIIHLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=16596 # 1b4fA.38.60 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 38 :KKIIDQIKT 1b4fA 61 :KKILNSIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16597 # 1w33A.38.124 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 38 :KKIIDQIKT 1w33A 194 :KSLLMQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16598 # 1i60A.38.79 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 38 :KKIIDQIKT 1i60A 80 :NEIITEFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16599 # 1s2xA.38.52 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIKT 1s2xA 47 :DFLRRVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16600 # 1qf5A.38.183 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 38 :KKIIDQIKT 1qf5A 184 :QKVLDDTMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16601 # 3fapB.38.26 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 T0287 38 :KKIIDQ 3fapB 134 :KGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16602 # 2cwyA.38.35 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 38 :KKIIDQIKT 2cwyA 36 :RRLLQGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16603 # 1vliA.38.269 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 38 :KKIIDQIKT 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16604 # 1hx1B.38.20 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 38 :KKIIDQIKT 1hx1B 170 :EKIADQLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16605 # 2c5rA.38.39 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIKT 2c5rA 103 :EVLNYIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=16606 # 1jfmA.38.136 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 38 :KKIIDQIKT 1jfmA 137 :GVIMNKWKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16607 # 1bo1A.38.257 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 38 :KKIIDQIKT 1bo1A 258 :KNFLEKLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16608 # 256bA.38.23 read from T0287.t04.many.frag # found chain 256bA in training set T0287 38 :KKIIDQIKT 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16609 # 1nt2B.38.74 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 38 :KKIIDQIKT 1nt2B 86 :RYVVALVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16610 # 1nekA.38.480 read from T0287.t04.many.frag # found chain 1nekA in template set T0287 38 :KKIIDQIKT 1nekA 481 :AKGLEQLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16611 # 1qqfA.38.33 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 38 :KKIIDQIKT 1qqfA 1043 :QEALELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16612 # 1fzcA.38.31 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 38 :KKIIDQIKT 1fzcA 142 :AQLVDMKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16613 # 1j5sA.38.220 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 38 :KKIIDQIKT 1j5sA 209 :DGFLNALWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16614 # 1r7jA.38.63 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 38 :KKIIDQIKT 1r7jA 64 :EELLEDIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16615 # 1ofcX.38.165 read from T0287.t04.many.frag # found chain 1ofcX in template set T0287 38 :KKIIDQIKT 1ofcX 853 :ERIMGQIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16616 # 1qoyA.38.181 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 38 :KKIIDQIKT 1qoyA 167 :QSQVDKIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16617 # 1ct5A.38.11 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 38 :KKIIDQIKT 1ct5A 13 :TQLIAQYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=16618 # 1bkrA.38.92 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 38 :KKIIDQIKT 1bkrA 93 :KSIITYVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16619 # 1e6iA.38.71 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 38 :KKIIDQIKT 1e6iA 390 :EDFIYDARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16620 # 1jqnA.38.28 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 38 :KKIIDQIKT 1jqnA 29 :EHILERVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=16621 # 1td6A.38.53 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 38 :KKIIDQIKT 1td6A 42 :TFFLHQFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16622 # 1fi4A.38.298 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 38 :KKIIDQIKT 1fi4A 279 :KRIISWCHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16623 # 1fviA.38.105 read from T0287.t04.many.frag # found chain 1fviA in template set T0287 38 :KKIIDQIKT 1fviA 107 :KKYIDRVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=16624 # 1p4xA.38.101 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 38 :KKIIDQIKT 1p4xA 102 :EKIAERVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16625 # 1vls.38.56 read from T0287.t04.many.frag # found chain 1vls in template set T0287 38 :KKIIDQIKT 1vls 91 :QNAKTTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16626 # 1b4fA.39.61 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 39 :KIIDQIKTM 1b4fA 62 :KILNSIQVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16627 # 1i60A.39.80 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 39 :KIIDQIKTM 1i60A 81 :EIITEFKGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16628 # 3fapB.39.27 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 39 :KIIDQ 3fapB 135 :GMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16629 # 1s2xA.39.53 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 39 :KIIDQIKTM 1s2xA 47 :DFLRRVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16630 # 2c5rA.39.40 read from T0287.t04.many.frag # found chain 2c5rA in template set T0287 39 :KIIDQIKTM 2c5rA 103 :EVLNYIETQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16631 # 1w33A.39.125 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 39 :KIIDQIKTM 1w33A 195 :SLLMQIKSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16632 # 256bA.39.24 read from T0287.t04.many.frag # found chain 256bA in training set T0287 39 :KIIDQIKTM 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16633 # 1hx1B.39.21 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 39 :KIIDQIKTM 1hx1B 171 :KIADQLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16634 # 1vliA.39.270 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 39 :KIIDQIKTM 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16635 # 1qf5A.39.184 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 39 :KIIDQIKTM 1qf5A 185 :KVLDDTMAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16636 # 1nt2B.39.75 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 39 :KIIDQIKTM 1nt2B 87 :YVVALVKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16637 # 1bo1A.39.258 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 39 :KIIDQIKTM 1bo1A 259 :NFLEKLKRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16638 # 1jqnA.39.29 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 39 :KIIDQIKTM 1jqnA 30 :HILERVETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16639 # 1td6A.39.54 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 39 :KIIDQIKTM 1td6A 43 :FFLHQFDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16640 # 1ofcX.39.166 read from T0287.t04.many.frag # found chain 1ofcX in template set T0287 39 :KIIDQIKTM 1ofcX 854 :RIMGQIERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16641 # 1e6iA.39.72 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 39 :KIIDQIKTM 1e6iA 391 :DFIYDARLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16642 # 1j5sA.39.221 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 39 :KIIDQIKTM 1j5sA 210 :GFLNALWKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16643 # 2jdxA.39.84 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 39 :KIIDQIKTM 2jdxA 122 :KAVAEIEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16644 # 1ct5A.39.12 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 39 :KIIDQIKTM 1ct5A 14 :QLIAQYESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16645 # 1jfmA.39.137 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 39 :KIIDQIKTM 1jfmA 138 :VIMNKWKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16646 # 2cwyA.39.36 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 39 :KIIDQIKTM 2cwyA 37 :RLLQGVILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16647 # 1qqfA.39.34 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 39 :KIIDQIKTM 1qqfA 1044 :EALELIKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16648 # 1gw5S.39.78 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 39 :KIIDQIKTM 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16649 # 1bkrA.39.93 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 39 :KIIDQIKTM 1bkrA 94 :SIITYVVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16650 # 1orjA.39.50 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 39 :KIIDQIKTM 1orjA 1051 :EFVENIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16651 # 1fviA.39.106 read from T0287.t04.many.frag # found chain 1fviA in template set T0287 39 :KIIDQIKTM 1fviA 108 :KYIDRVEDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16652 # 1r7jA.39.64 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 39 :KIIDQIKTM 1r7jA 65 :ELLEDIRKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16653 # 1p4xA.39.102 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 39 :KIIDQIKTM 1p4xA 103 :KIAERVTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16654 # 1vls.39.57 read from T0287.t04.many.frag # found chain 1vls in template set T0287 39 :KIIDQIKTM 1vls 92 :NAKTTLAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16655 # 1h05A.39.56 read from T0287.t04.many.frag # found chain 1h05A in training set T0287 39 :KIIDQIKTM 1h05A 57 :QLLDWIHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16656 # 1i60A.40.81 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 40 :IIDQIKTMH 1i60A 82 :IITEFKGMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16657 # 1b4fA.40.62 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 40 :IIDQIKTMH 1b4fA 63 :ILNSIQVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16658 # 3fapB.40.28 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 40 :IIDQ 3fapB 136 :MFEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=16660 # 2c5rA.40.41 read from T0287.t04.many.frag # found chain 2c5rA in template set T0287 40 :IIDQIKTMH 2c5rA 104 :VLNYIETQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16661 # 256bA.40.25 read from T0287.t04.many.frag # found chain 256bA in training set T0287 40 :IIDQIKTMH 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16662 # 1nt2B.40.76 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 40 :IIDQIKTMH 1nt2B 88 :VVALVKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16663 # 1w33A.40.126 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 40 :IIDQIKTMH 1w33A 196 :LLMQIKSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16664 # 1s2xA.40.54 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 40 :IIDQIKTMH 1s2xA 48 :FLRRVQELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16665 # 1jqnA.40.30 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 40 :IIDQIKTMH 1jqnA 31 :ILERVETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16666 # 1hx1B.40.22 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 40 :IIDQIKTMH 1hx1B 172 :IADQLEELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16667 # 1e6iA.40.73 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 40 :IIDQIKTMH 1e6iA 392 :FIYDARLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16668 # 1td6A.40.55 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 40 :IIDQIKTMH 1td6A 44 :FLHQFDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16669 # 1gw5S.40.79 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 40 :IIDQIKTMH 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16670 # 1ofcX.40.167 read from T0287.t04.many.frag # found chain 1ofcX in template set T0287 40 :IIDQIKTMH 1ofcX 855 :IMGQIERGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16671 # 1orjA.40.51 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 40 :IIDQIKTMH 1orjA 1052 :FVENIDRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16672 # 1vls.40.58 read from T0287.t04.many.frag # found chain 1vls in template set T0287 40 :IIDQIKTMH 1vls 93 :AKTTLAQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16673 # 1qf5A.40.185 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 40 :IIDQIKTMH 1qf5A 186 :VLDDTMAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16674 # 1vliA.40.271 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 40 :IIDQIKTMH 1vliA 260 :MVDGIRKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16675 # 1j5sA.40.222 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 40 :IIDQIKTMH 1j5sA 211 :FLNALWKSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16676 # 1bo1A.40.259 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 40 :IIDQIKTMH 1bo1A 260 :FLEKLKRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16677 # 1xlyA.40.49 read from T0287.t04.many.frag # found chain 1xlyA in template set T0287 40 :IIDQIKTMH 1xlyA 55 :LIKFVKKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16678 # 1bkrA.40.94 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 40 :IIDQIKTMH 1bkrA 95 :IITYVVTYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16679 # 1gqiA.40.614 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 40 :IIDQIKTMH 1gqiA 619 :GVEQVRAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16680 # 1nekA.40.482 read from T0287.t04.many.frag # found chain 1nekA in template set T0287 40 :IIDQIKTMH 1nekA 483 :GLEQLKVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16681 # 1p4xA.40.103 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 40 :IIDQIKTMH 1p4xA 104 :IAERVTLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16682 # 1ct5A.40.13 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 40 :IIDQIKTMH 1ct5A 15 :LIAQYESVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16683 # 2jdxA.40.85 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 40 :IIDQIKTMH 2jdxA 123 :AVAEIEEMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16684 # 1v74B.40.43 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 40 :IIDQIKTMH 1v74B 44 :ILNCGEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16685 # 1hulA.40.63 read from T0287.t04.many.frag # found chain 1hulA in template set Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1hulA)L72 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1hulA)L72 T0287 40 :IID 1hulA 68 :LFK T0287 45 :KTMH 1hulA 73 :SLIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16687 # 2cwyA.40.37 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 40 :IIDQIKTMH 2cwyA 38 :LLQGVILLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16688 # 1i60A.41.82 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 41 :IDQIKTMHD 1i60A 83 :ITEFKGMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=16689 # 1b4fA.41.63 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 41 :IDQIKTMHD 1b4fA 64 :LNSIQVMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16690 # 2c5rA.41.42 read from T0287.t04.many.frag # found chain 2c5rA in template set T0287 41 :IDQIKTMHD 2c5rA 105 :LNYIETQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16691 # 3fapB.41.29 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)H48 (3fapB)H144 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 T0287 41 :IDQ 3fapB 137 :FEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16692 # 1jqnA.41.31 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 41 :IDQIKTMHD 1jqnA 32 :LERVETIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16693 # 256bA.41.26 read from T0287.t04.many.frag # found chain 256bA in training set T0287 41 :IDQIKTMHD 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16694 # 1nt2B.41.77 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 41 :IDQIKTMHD 1nt2B 89 :VALVKALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16695 # 1s2xA.41.55 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 41 :IDQIKTMHD 1s2xA 49 :LRRVQELRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16696 # 1hx1B.41.23 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 41 :IDQIKTMHD 1hx1B 173 :ADQLEELNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16697 # 1bf5A.41.7 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 41 :IDQIKTMHD 1bf5A 143 :DSKVRNVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16698 # 1w33A.41.127 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 41 :IDQIKTMHD 1w33A 197 :LMQIKSNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16699 # 1gqiA.41.615 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 41 :IDQIKTMHD 1gqiA 620 :VEQVRAMQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16700 # 1e6iA.41.74 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 41 :IDQIKTMHD 1e6iA 393 :IYDARLVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16701 # 1td6A.41.56 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 41 :IDQIKTMHD 1td6A 45 :LHQFDKVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=16702 # 1ct5A.41.14 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 41 :IDQIKTMHD 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16703 # 1xlyA.41.50 read from T0287.t04.many.frag # found chain 1xlyA in template set T0287 41 :IDQIKTMHD 1xlyA 56 :IKFVKKLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16704 # 1gw5S.41.80 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 41 :IDQIKTMHD 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16705 # 2jdxA.41.86 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 41 :IDQIKTMHD 2jdxA 124 :VAEIEEMCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16706 # 1orjA.41.52 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 41 :IDQIKTMHD 1orjA 1053 :VENIDRVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16707 # 1bo1A.41.260 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 41 :IDQIKTMHD 1bo1A 261 :LEKLKRDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16708 # 1vls.41.59 read from T0287.t04.many.frag # found chain 1vls in template set T0287 41 :IDQIKTMHD 1vls 94 :KTTLAQAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16709 # 1vdkA.41.204 read from T0287.t04.many.frag # found chain 1vdkA in training set T0287 41 :IDQIKTMHD 1vdkA 205 :AAQLKTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16710 # 1yvhA.41.62 read from T0287.t04.many.frag # found chain 1yvhA in template set T0287 41 :IDQIKTMHD 1yvhA 85 :LDLLPDTYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16711 # 1qf5A.41.186 read from T0287.t04.many.frag # found chain 1qf5A in template set Warning: unaligning (T0287)M47 (1qf5A)V193 because G (3-10) conformation "forbidden" or filtered. T0287 41 :IDQIKT 1qf5A 187 :LDDTMA T0287 48 :HD 1qf5A 194 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16713 # 1bgf.41.80 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 41 :IDQIKTMHD 1bgf 80 :IHNLKRIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16714 # 1ofcX.41.168 read from T0287.t04.many.frag # found chain 1ofcX in template set T0287 41 :IDQIKTMHD 1ofcX 856 :MGQIERGEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16715 # 1v74B.41.44 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 41 :IDQIKTMHD 1v74B 45 :LNCGEELFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16716 # 1vliA.41.272 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 41 :IDQIKTMHD 1vliA 261 :VDGIRKTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16717 # 1j5sA.41.223 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 41 :IDQIKTMHD 1j5sA 212 :LNALWKSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16718 # 2f6lA.41.40 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 41 :IDQIKTMHD 2f6lA 74 :EQQLAKLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16719 # 1i60A.42.83 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 42 :DQIKTMHDF 1i60A 84 :TEFKGMMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=16720 # 1b4fA.42.64 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 42 :DQIKTMHDF 1b4fA 65 :NSIQVMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16721 # 1nt2B.42.78 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 42 :DQIKTMHDF 1nt2B 90 :ALVKALEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16722 # 1jqnA.42.32 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 42 :DQIKTMHDF 1jqnA 33 :ERVETIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16723 # 3fapB.42.30 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 42 :DQ 3fapB 138 :EV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=16725 # 1bf5A.42.8 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 42 :DQIKTMHDF 1bf5A 144 :SKVRNVKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16726 # 2c5rA.42.43 read from T0287.t04.many.frag # found chain 2c5rA in template set T0287 42 :DQIKTMHDF 2c5rA 106 :NYIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16727 # 256bA.42.27 read from T0287.t04.many.frag # found chain 256bA in training set T0287 42 :DQIKTMHDF 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16728 # 1gqiA.42.616 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 42 :DQIKTMHDF 1gqiA 621 :EQVRAMQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16729 # 1e6iA.42.75 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 42 :DQIKTMHDF 1e6iA 394 :YDARLVFNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16730 # 1s2xA.42.56 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 42 :DQIKTMHDF 1s2xA 50 :RRVQELRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16731 # 1hx1B.42.24 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 42 :DQIKTMHDF 1hx1B 174 :DQLEELNKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16732 # 1xlyA.42.51 read from T0287.t04.many.frag # found chain 1xlyA in template set T0287 42 :DQIKTMHDF 1xlyA 57 :KFVKKLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16733 # 1orjA.42.53 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 42 :DQIKTMHDF 1orjA 1054 :ENIDRVYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16734 # 1td6A.42.57 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 42 :DQIKTMHDF 1td6A 46 :HQFDKVMEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16735 # 2f6lA.42.41 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 42 :DQIKTMHDF 2f6lA 75 :QQLAKLGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=16736 # 1zupA.42.285 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE at template residue (1zupA)L274 T0287 43 :QIKTMHDF 1zupA 275 :PIQFLEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=16737 # 1v74B.42.45 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 42 :DQIKTMHDF 1v74B 46 :NCGEELFMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16738 # 1ct5A.42.15 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 42 :DQIKTMHDF 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16739 # 1vdkA.42.205 read from T0287.t04.many.frag # found chain 1vdkA in training set T0287 42 :DQIKTMHDF 1vdkA 206 :AQLKTTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16740 # 1gw5S.42.81 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 42 :DQIKTMHDF 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16741 # 1fjgT.42.53 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 42 :DQIKTMHDF 1fjgT 54 :KIMRKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16742 # 1nogA.42.29 read from T0287.t04.many.frag # found chain 1nogA in training set T0287 42 :DQIKTMHDF 1nogA 30 :GTIDELNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16743 # 1u0fA.42.219 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 42 :DQIKTMHDF 1u0fA 219 :TNAETAKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=16744 # 1w33A.42.128 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 42 :DQIKTMHDF 1w33A 198 :MQIKSNLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16745 # 1kkoA.42.212 read from T0287.t04.many.frag # found chain 1kkoA in training set T0287 42 :DQIKTMHDF 1kkoA 213 :EYVRWLSDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16746 # 1alu.42.118 read from T0287.t04.many.frag # found chain 1alu in template set T0287 42 :DQIKTMHDF 1alu 117 :MSTKVLIQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16747 # 1moq.42.194 read from T0287.t04.many.frag # found chain 1moq in training set T0287 42 :DQIKTMHDF 1moq 435 :HGLQALPSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16748 # 1ail.42.37 read from T0287.t04.many.frag # found chain 1ail in template set T0287 42 :DQIKTMHDF 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16749 # 2acvA.42.430 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 42 :DQIKTMHDF 2acvA 431 :KKVQEMKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16750 # 1i60A.43.84 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 43 :QIKTMHDFF 1i60A 85 :EFKGMMETC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16751 # 1nt2B.43.79 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 43 :QIKTMHDFF 1nt2B 91 :LVKALEEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=16752 # 1jqnA.43.33 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 43 :QIKTMHDFF 1jqnA 34 :RVETIRKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16753 # 2c5rA.43.44 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 T0287 43 :QIKTMHDF 2c5rA 107 :YIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=16754 # 3fapB.43.31 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 43 :Q 3fapB 139 :V T0287 48 :H 3fapB 144 :H T0287 51 :F 3fapB 147 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=16757 # 1e6iA.43.76 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 43 :QIKTMHDFF 1e6iA 395 :DARLVFNNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16758 # 1gqiA.43.617 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 43 :QIKTMHDFF 1gqiA 622 :QVRAMQRTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=16759 # 1bf5A.43.9 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 43 :QIKTMHDFF 1bf5A 145 :KVRNVKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16760 # 1hx1B.43.25 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 43 :QIKTMHDFF 1hx1B 175 :QLEELNKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16761 # 1b4fA.43.65 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 43 :QIKTMHDFF 1b4fA 66 :SIQVMRAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16762 # 256bA.43.28 read from T0287.t04.many.frag # found chain 256bA in training set T0287 43 :QIKTMHDFF 256bA 29 :ALTKMRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16763 # 1vdkA.43.206 read from T0287.t04.many.frag # found chain 1vdkA in training set T0287 43 :QIKTMHDFF 1vdkA 207 :QLKTTLAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16764 # 1moq.43.195 read from T0287.t04.many.frag # found chain 1moq in training set T0287 43 :QIKTMHDFF 1moq 436 :GLQALPSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16765 # 1s2xA.43.57 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 43 :QIKTMHDFF 1s2xA 51 :RVQELRINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16766 # 1zupA.43.286 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 43 :QIKTMHDFF 1zupA 275 :PIQFLEENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16767 # 1n1fA.43.117 read from T0287.t04.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)H48 (1n1fA)H123 because H (helix) conformation "forbidden" or filtered. T0287 43 :QIKTM 1n1fA 118 :ATRVI T0287 49 :DFF 1n1fA 124 :DNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16769 # 2acvA.43.431 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 43 :QIKTMHDFF 2acvA 432 :KVQEMKEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16770 # 1orjA.43.54 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 43 :QIKTMHDFF 1orjA 1055 :NIDRVYDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=16771 # 2ahmA.43.13 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 43 :QIKTMHDFF 2ahmA 14 :TSVVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16772 # 1u0fA.43.220 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 43 :QIKTMHDFF 1u0fA 220 :NAETAKEWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16773 # 1ail.43.38 read from T0287.t04.many.frag # found chain 1ail in template set T0287 43 :QIKTMHDFF 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16774 # 1fjgT.43.54 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 43 :QIKTMHDFF 1fjgT 55 :IMRKAESLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16775 # 1ct5A.43.16 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 43 :QIKTMHDFF 1ct5A 18 :QYESVREVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16776 # 2etsA.43.22 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 43 :QIKTMHDFF 2etsA 11 :EVNNMQQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16777 # 1xlyA.43.52 read from T0287.t04.many.frag # found chain 1xlyA in template set T0287 43 :QIKTMHDFF 1xlyA 58 :FVKKLRFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16778 # 1nogA.43.30 read from T0287.t04.many.frag # found chain 1nogA in training set T0287 43 :QIKTMHDFF 1nogA 31 :TIDELNSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16779 # 1vjxA.43.53 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 43 :QIKTMHDFF 1vjxA 42 :QERIHAEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16780 # 2btoA.43.418 read from T0287.t04.many.frag # found chain 2btoA in template set T0287 43 :QIKTMHDFF 2btoA 419 :SAQELVQSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16781 # 1v74B.43.46 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 43 :QIKTMHDFF 1v74B 47 :CGEELFMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16782 # 2cbiA.43.497 read from T0287.t04.many.frag # found chain 2cbiA in template set T0287 43 :QIKTMHDFF 2cbiA 528 :EFARMEEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16783 # 1i60A.44.85 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 44 :IKTMHDFFK 1i60A 86 :FKGMMETCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16784 # 1bf5A.44.10 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 44 :IKTMHDFFK 1bf5A 146 :VRNVKDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16785 # 1jqnA.44.34 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 44 :IKTMHDFFK 1jqnA 35 :VETIRKLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16786 # 1nt2B.44.80 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 44 :IKTMHDFFK 1nt2B 92 :VKALEEIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16787 # 1e6iA.44.77 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 44 :IKTMHDFFK 1e6iA 396 :ARLVFNNCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16788 # 1orjA.44.55 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 44 :IKTMHDFFK 1orjA 1056 :IDRVYDIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16789 # 1moq.44.196 read from T0287.t04.many.frag # found chain 1moq in training set T0287 44 :IKTMHDFFK 1moq 437 :LQALPSRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16790 # 1zupA.44.287 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 44 :IKTMHDFFK 1zupA 276 :IQFLEENLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16791 # 1n1fA.44.118 read from T0287.t04.many.frag # found chain 1n1fA in template set T0287 44 :IKTMHDFFK 1n1fA 119 :TRVIHDNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16792 # 1gqiA.44.618 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 44 :IKTMHDFFK 1gqiA 623 :VRAMQRTWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16793 # 3fapB.44.32 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)H48 (3fapB)H144 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 51 :FK 3fapB 147 :ME Number of specific fragments extracted= 1 number of extra gaps= 1 total=16794 # 2acvA.44.432 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 44 :IKTMHDFFK 2acvA 433 :VQEMKEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16795 # 1u0fA.44.221 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 44 :IKTMHDFFK 1u0fA 221 :AETAKEWFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16796 # 1fjgT.44.55 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 44 :IKTMHDFFK 1fjgT 56 :MRKAESLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=16797 # 1ow4A.44.96 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 44 :IKTMHDFFK 1ow4A 86 :AKAVNDCAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16798 # 1ail.44.39 read from T0287.t04.many.frag # found chain 1ail in template set T0287 44 :IKTMHDFFK 1ail 40 :QKSLRGRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16799 # 1hx1B.44.26 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 44 :IKTMHDFFK 1hx1B 176 :LEELNKELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16800 # 1nogA.44.31 read from T0287.t04.many.frag # found chain 1nogA in training set T0287 44 :IKTMHDFFK 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16801 # 2etsA.44.23 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 44 :IKTMHDFFK 2etsA 12 :VNNMQQNFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16802 # 2cbiA.44.498 read from T0287.t04.many.frag # found chain 2cbiA in template set T0287 44 :IKTMHDFFK 2cbiA 529 :FARMEEACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16803 # 2c5rA.44.45 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 44 :IKTMHDF 2c5rA 108 :IETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=16804 # 1b4fA.44.66 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 44 :IKTMHDFFK 1b4fA 67 :IQVMRAQMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16805 # 1kkoA.44.214 read from T0287.t04.many.frag # found chain 1kkoA in training set T0287 44 :IKTMHDFFK 1kkoA 215 :VRWLSDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16806 # 256bA.44.29 read from T0287.t04.many.frag # found chain 256bA in training set T0287 44 :IKTMHDFFK 256bA 30 :LTKMRAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16807 # 1h6kA.44.546 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H48 (1h6kA)H570 because H (helix) conformation "forbidden" or filtered. T0287 44 :IKTM 1h6kA 566 :LAKF T0287 49 :DFFK 1h6kA 571 :EVFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16809 # 2ahmA.44.14 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 44 :IKTMHDFFK 2ahmA 15 :SVVLLSVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16810 # 1ct5A.44.17 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 44 :IKTMHDFFK 1ct5A 19 :YESVREVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16811 # 1gw5S.44.83 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 44 :IKTMHDFFK 1gw5S 84 :IHNFVEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16812 # 2f6lA.44.43 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 44 :IKTMHDFFK 2f6lA 77 :LAKLGEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16813 # 1h5uA.44.734 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 44 :IKTMHDFFK 1h5uA 735 :IPELRQIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16814 # 1jqnA.45.35 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 45 :KTMHDFFKQ 1jqnA 36 :ETIRKLSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16815 # 1nt2B.45.81 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 45 :KTMHDFFKQ 1nt2B 93 :KALEEIDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=16816 # 1orjA.45.56 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 45 :KTMHDFFKQ 1orjA 1057 :DRVYDIISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16817 # 1moq.45.197 read from T0287.t04.many.frag # found chain 1moq in training set T0287 45 :KTMHDFFKQ 1moq 438 :QALPSRIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16818 # 1u0fA.45.222 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 45 :KTMHDFFKQ 1u0fA 222 :ETAKEWFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16819 # 1zupA.45.288 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 45 :KTMHDFFKQ 1zupA 277 :QFLEENLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16820 # 1i60A.45.86 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 45 :KTMHDFFKQ 1i60A 87 :KGMMETCKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16821 # 1e6iA.45.78 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 45 :KTMHDFFKQ 1e6iA 397 :RLVFNNCRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16822 # 1bf5A.45.11 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 45 :KTMHDFFKQ 1bf5A 147 :RNVKDKVMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16823 # 1ow4A.45.97 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 45 :KTMHDFFKQ 1ow4A 87 :KAVNDCANQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16824 # 2acvA.45.433 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 45 :KTMHDFFKQ 2acvA 434 :QEMKEMSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16825 # 1n1fA.45.119 read from T0287.t04.many.frag # found chain 1n1fA in template set T0287 45 :KTMHDFFKQ 1n1fA 120 :RVIHDNYDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16826 # 1ail.45.40 read from T0287.t04.many.frag # found chain 1ail in template set T0287 45 :KTMHDFFKQ 1ail 41 :KSLRGRGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=16827 # 1h6kA.45.547 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 45 :KTMHDFFKQ 1h6kA 567 :AKFHEVFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16828 # 2etsA.45.24 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 45 :KTMHDFFKQ 2etsA 13 :NNMQQNFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16829 # 1fjgT.45.56 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 45 :KTMHDFFKQ 1fjgT 57 :RKAESLIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16830 # 3fapB.45.33 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FKQ 3fapB 147 :MER Number of specific fragments extracted= 2 number of extra gaps= 2 total=16832 # 1vjxA.45.55 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 45 :KTMHDFFKQ 1vjxA 44 :RIHAEIFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16833 # 1h5uA.45.735 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 45 :KTMHDFFKQ 1h5uA 736 :PELRQIIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16834 # 1p4xA.45.108 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 45 :KTMHDFFKQ 1p4xA 109 :TLFDQIIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16835 # 1jfmA.45.143 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 45 :KTMHDFFKQ 1jfmA 144 :KDDGEFVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16836 # 1nogA.45.32 read from T0287.t04.many.frag # found chain 1nogA in training set T0287 45 :KTMHDFFKQ 1nogA 33 :DELNSFIGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16837 # 1gqiA.45.619 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 45 :KTMHDFFKQ 1gqiA 624 :RAMQRTWDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16838 # 2ahmA.45.15 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 45 :KTMHDFFKQ 2ahmA 16 :VVLLSVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16839 # 1j5sA.45.227 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 45 :KTMHDFFKQ 1j5sA 216 :WKSHEHFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16840 # 2f6lA.45.44 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 45 :KTMHDFFKQ 2f6lA 78 :AKLGEDARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16841 # 1jeyA.45.518 read from T0287.t04.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)K45 (1jeyA)G519 because S (epsilon) conformation "forbidden" or filtered. T0287 46 :TMHDFFKQ 1jeyA 520 :SLVDEFKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16842 # 1gw5S.45.84 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 45 :KTMHDFFKQ 1gw5S 85 :HNFVEVLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16843 # 2c5rA.45.46 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 45 :KTMHDF 2c5rA 109 :ETQRTY T0287 53 :Q 2c5rA 117 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=16845 # 1vdkA.45.208 read from T0287.t04.many.frag # found chain 1vdkA in training set T0287 45 :KTMHDFFKQ 1vdkA 209 :KTTLAAVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16846 # 1moq.46.198 read from T0287.t04.many.frag # found chain 1moq in training set T0287 46 :TMHDFFKQM 1moq 439 :ALPSRIEQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16847 # 1zupA.46.289 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 46 :TMHDFFKQM 1zupA 278 :FLEENLSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16848 # 1orjA.46.57 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 46 :TMHDFFKQM 1orjA 1058 :RVYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16849 # 1u0fA.46.223 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 46 :TMHDFFKQM 1u0fA 223 :TAKEWFLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16850 # 1jqnA.46.36 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 46 :TMHDFFKQM 1jqnA 37 :TIRKLSKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16851 # 1ow4A.46.98 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 46 :TMHDFFKQM 1ow4A 88 :AVNDCANQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16852 # 1e6iA.46.79 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 46 :TMHDFFKQM 1e6iA 398 :LVFNNCRMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16853 # 1h6kA.46.548 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 46 :TMHDFFKQM 1h6kA 568 :KFHEVFKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16854 # 1bf5A.46.12 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 46 :TMHDFFKQM 1bf5A 148 :NVKDKVMCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16855 # 2acvA.46.434 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 46 :TMHDFFKQM 2acvA 435 :EMKEMSRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16856 # 1i60A.46.87 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 46 :TMHDFFKQM 1i60A 88 :GMMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16857 # 1n1fA.46.120 read from T0287.t04.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)H48 (1n1fA)H123 because H (helix) conformation "forbidden" or filtered. T0287 46 :TM 1n1fA 121 :VI T0287 49 :DFFKQM 1n1fA 124 :DNYDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16859 # 1ail.46.41 read from T0287.t04.many.frag # found chain 1ail in template set T0287 46 :TMHDFFKQM 1ail 42 :SLRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16860 # 1nt2B.46.82 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 46 :TMHDFFKQM 1nt2B 94 :ALEEIDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16861 # 1vjxA.46.56 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 46 :TMHDFFKQM 1vjxA 45 :IHAEIFRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16862 # 2etsA.46.25 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 46 :TMHDFFKQM 2etsA 14 :NMQQNFENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16863 # 1w33A.46.71 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 46 :TMHDFFKQM 1w33A 141 :KLKEILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16864 # 1jeyA.46.519 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 46 :TMHDFFKQM 1jeyA 520 :SLVDEFKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16865 # 1fjgT.46.57 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 46 :TMHDFFKQM 1fjgT 58 :KAESLIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16866 # 1alu.46.122 read from T0287.t04.many.frag # found chain 1alu in template set T0287 46 :TMHDFFKQM 1alu 121 :VLIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16867 # 1gw5S.46.85 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 46 :TMHDFFKQM 1gw5S 86 :NFVEVLNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16868 # 1p4xA.46.109 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 46 :TMHDFFKQM 1p4xA 110 :LFDQIIKQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16869 # 1h5uA.46.736 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 46 :TMHDFFKQM 1h5uA 737 :ELRQIIEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16870 # 2ahmA.46.16 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 46 :TMHDFFKQM 2ahmA 17 :VLLSVLQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16871 # 1gqiA.46.620 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 46 :TMHDFFKQM 1gqiA 625 :AMQRTWDQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16872 # 1qlwA.46.267 read from T0287.t04.many.frag # found chain 1qlwA in training set T0287 46 :TMHDFFKQM 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16873 # 2f6lA.46.45 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 46 :TMHDFFKQM 2f6lA 79 :KLGEDARSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16874 # 1j5sA.46.228 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 46 :TMHDFFKQM 1j5sA 217 :KSHEHFKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16875 # 1qf5A.46.191 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 46 :TMHDFFKQM 1qf5A 192 :AVADILTSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16876 # 1r8iA.46.134 read from T0287.t04.many.frag # found chain 1r8iA in template set T0287 46 :TMHDFFKQM 1r8iA 159 :DMQALTEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16877 # 1moq.47.199 read from T0287.t04.many.frag # found chain 1moq in training set T0287 47 :MHDFFKQMH 1moq 440 :LPSRIEQML Number of specific fragments extracted= 1 number of extra gaps= 0 total=16878 # 1u0fA.47.224 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 47 :MHDFFKQMH 1u0fA 224 :AKEWFLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16879 # 1ow4A.47.99 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 47 :MHDFFKQMH 1ow4A 89 :VNDCANQVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16880 # 1zupA.47.290 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 47 :MHDFFKQMH 1zupA 279 :LEENLSYYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16881 # 1e6iA.47.80 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 47 :MHDFFKQMH 1e6iA 399 :VFNNCRMYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16882 # 1jqnA.47.37 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 47 :MHDFFKQMH 1jqnA 38 :IRKLSKSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16883 # 1h6kA.47.549 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)M47 (1h6kA)F569 because G (3-10) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1h6kA 570 :HEVFKTLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16884 # 1w33A.47.72 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 47 :MHDFFKQMH 1w33A 142 :LKEILEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16885 # 2acvA.47.435 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 47 :MHDFFKQMH 2acvA 436 :MKEMSRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16886 # 1orjA.47.58 read from T0287.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 T0287 47 :MHDFFKQM 1orjA 1059 :VYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16887 # 1ail.47.42 read from T0287.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1ail 43 :LRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16888 # 1nt2B.47.83 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 47 :MHDFFKQMH 1nt2B 95 :LEEIDESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16889 # 1vjxA.47.57 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 47 :MHDFFKQMH 1vjxA 46 :HAEIFRKMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16890 # 1jeyA.47.520 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 47 :MHDFFKQMH 1jeyA 521 :LVDEFKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16891 # 1n1fA.47.121 read from T0287.t04.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)H55 (1n1fA)E130 because P (beta_P) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1n1fA 122 :IHDNYDQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16892 # 2f6lA.47.46 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 47 :MHDFFKQMH 2f6lA 80 :LGEDARSQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16893 # 1bf5A.47.13 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 47 :MHDFFKQMH 1bf5A 149 :VKDKVMCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16894 # 1ajsA.47.311 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 47 :MHDFFKQMH 1ajsA 312 :DPELFHEWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16895 # 2etsA.47.26 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 47 :MHDFFKQMH 2etsA 15 :MQQNFENVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16896 # 1i60A.47.88 read from T0287.t04.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)H55 (1i60A)G97 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1i60A 89 :MMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16897 # 1h5uA.47.737 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 47 :MHDFFKQMH 1h5uA 738 :LRQIIEQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16898 # 1ei6A.47.220 read from T0287.t04.many.frag # found chain 1ei6A in template set Warning: unaligning (T0287)H55 (1ei6A)H230 because H (helix) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1ei6A 222 :MDSYFKRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=16899 # 1p4xA.47.110 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 47 :MHDFFKQMH 1p4xA 111 :FDQIIKQFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16900 # 1t98A.47.163 read from T0287.t04.many.frag # found chain 1t98A in template set T0287 47 :MHDFFKQMH 1t98A 164 :VAEIFDSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=16901 # 1qlwA.47.268 read from T0287.t04.many.frag # found chain 1qlwA in training set T0287 47 :MHDFFKQMH 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16902 # 1fjgT.47.58 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 47 :MHDFFKQMH 1fjgT 59 :AESLIDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16903 # 1alu.47.123 read from T0287.t04.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 T0287 47 :MHDFFKQM 1alu 122 :LIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16904 # 1hz4A.47.219 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 47 :MHDFFKQMH 1hz4A 218 :VRVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16905 # 1r8iA.47.135 read from T0287.t04.many.frag # found chain 1r8iA in template set T0287 47 :MHDFFKQMH 1r8iA 160 :MQALTEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16906 # 1wbeA.47.157 read from T0287.t04.many.frag # found chain 1wbeA in template set T0287 47 :MHDFFKQMH 1wbeA 158 :KSDFLKALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16907 # 1moq.48.200 read from T0287.t04.many.frag # found chain 1moq in training set T0287 48 :HDFFKQMHT 1moq 441 :PSRIEQMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16908 # 1h6kA.48.550 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H48 (1h6kA)H570 because H (helix) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1h6kA 571 :EVFKTLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16909 # 1ow4A.48.100 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 48 :HDFFKQMHT 1ow4A 90 :NDCANQVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16910 # 1zupA.48.291 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 48 :HDFFKQMHT 1zupA 280 :EENLSYYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16911 # 1e6iA.48.81 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 48 :HDFFKQMHT 1e6iA 400 :FNNCRMYNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16912 # 1u0fA.48.225 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 48 :HDFFKQMHT 1u0fA 225 :KEWFLEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16913 # 2acvA.48.436 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 48 :HDFFKQMHT 2acvA 437 :KEMSRNAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16914 # 1jqnA.48.38 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 48 :HDFFKQMHT 1jqnA 39 :RKLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16915 # 1w33A.48.73 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 48 :HDFFKQMHT 1w33A 143 :KEILEILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16916 # 1ail.48.43 read from T0287.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1ail 44 :RGRGSTL T0287 56 :T 1ail 52 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=16918 # 1hz4A.48.220 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 48 :HDFFKQMHT 1hz4A 219 :RVIYWQMTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16919 # 2f6lA.48.47 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 48 :HDFFKQMHT 2f6lA 81 :GEDARSQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16920 # 1jeyA.48.521 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 48 :HDFFKQMHT 1jeyA 522 :VDEFKELVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16921 # 1vjxA.48.58 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 48 :HDFFKQMHT 1vjxA 47 :AEIFRKMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16922 # 1ajsA.48.312 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 48 :HDFFKQMHT 1ajsA 313 :PELFHEWTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16923 # 1orjA.48.59 read from T0287.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)S1068 T0287 48 :HDFFKQM 1orjA 1060 :YDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16924 # 1ei6A.48.221 read from T0287.t04.many.frag # found chain 1ei6A in template set T0287 48 :HDFFKQMHT 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16925 # 1alu.48.124 read from T0287.t04.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 T0287 48 :HDFFKQM 1alu 123 :IQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16926 # 1nt2B.48.84 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 48 :HDFFKQMHT 1nt2B 96 :EEIDESINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16927 # 1t98A.48.164 read from T0287.t04.many.frag # found chain 1t98A in template set T0287 48 :HDFFKQMHT 1t98A 165 :AEIFDSIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16928 # 1wer.48.292 read from T0287.t04.many.frag # found chain 1wer in training set T0287 48 :HDFFKQMHT 1wer 1006 :SDELRTLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16929 # 1g5tA.48.108 read from T0287.t04.many.frag # found chain 1g5tA in training set T0287 48 :HDFFKQMHT 1g5tA 109 :WQHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16930 # 1bf5A.48.14 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 48 :HDFFKQMHT 1bf5A 150 :KDKVMCIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16931 # 1nd4A.48.116 read from T0287.t04.many.frag # found chain 1nd4A in template set T0287 48 :HDFFKQMHT 1nd4A 117 :ADAMRRLHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16932 # 1zx4A.48.72 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1zx4A 214 :CAVGDEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=16933 # 1jixA.48.327 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 48 :HDFFKQMHT 1jixA 328 :HDILNKTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16934 # 1r8iA.48.136 read from T0287.t04.many.frag # found chain 1r8iA in template set T0287 48 :HDFFKQMHT 1r8iA 161 :QALTEQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16935 # 1tukA.48.31 read from T0287.t04.many.frag # found chain 1tukA in template set T0287 48 :HDFFKQMHT 1tukA 32 :QGCFCQYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16936 # 1p4xA.48.111 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 48 :HDFFKQMHT 1p4xA 112 :DQIIKQFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16937 # 1fjgT.48.59 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 48 :HDFFKQMHT 1fjgT 60 :ESLIDKAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16938 # 1moq.49.201 read from T0287.t04.many.frag # found chain 1moq in training set T0287 49 :DFFKQMHTN 1moq 442 :SRIEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16939 # 1h6kA.49.551 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 49 :DFFKQMHTN 1h6kA 571 :EVFKTLAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=16940 # 1e6iA.49.82 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 49 :DFFKQMHTN 1e6iA 401 :NNCRMYNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16941 # 1hz4A.49.221 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 49 :DFFKQMHTN 1hz4A 220 :VIYWQMTGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16942 # 1zupA.49.292 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 49 :DFFKQMHTN 1zupA 281 :ENLSYYLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16943 # 1ow4A.49.101 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 49 :DFFKQMHTN 1ow4A 91 :DCANQVNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16944 # 2acvA.49.437 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)N57 (2acvA)D446 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 2acvA 438 :EMSRNAVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16945 # 1ail.49.44 read from T0287.t04.many.frag # found chain 1ail in template set T0287 49 :DFFKQMHTN 1ail 45 :GRGSTLGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16946 # 2f6lA.49.48 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 49 :DFFKQMHTN 2f6lA 82 :EDARSQHID Number of specific fragments extracted= 1 number of extra gaps= 0 total=16947 # 1zx4A.49.73 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1zx4A 215 :AVGDEM T0287 56 :TN 1zx4A 222 :NK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16949 # 1w33A.49.74 read from T0287.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1w33A 144 :EILEILKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16950 # 1jqnA.49.39 read from T0287.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1jqnA 40 :KLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16951 # 1u0fA.49.226 read from T0287.t04.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1u0fA 226 :EWFLEAA T0287 57 :N 1u0fA 234 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=16953 # 1sdiA.49.93 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 49 :DFFKQMHTN 1sdiA 94 :VLERKLSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16954 # 1nd4A.49.117 read from T0287.t04.many.frag # found chain 1nd4A in template set T0287 49 :DFFKQMHTN 1nd4A 118 :DAMRRLHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16955 # 1wer.49.293 read from T0287.t04.many.frag # found chain 1wer in training set T0287 49 :DFFKQMHTN 1wer 1007 :DELRTLSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16956 # 1jeyA.49.522 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 49 :DFFKQMHTN 1jeyA 523 :DEFKELVYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16957 # 1ajsA.49.313 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 49 :DFFKQMHTN 1ajsA 314 :ELFHEWTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16958 # 1r71A.49.56 read from T0287.t04.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)H55 (1r71A)G179 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1r71A 173 :DIAKEI T0287 56 :TN 1r71A 180 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16960 # 1nt2B.49.85 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 49 :DFFKQMHTN 1nt2B 97 :EIDESINML Number of specific fragments extracted= 1 number of extra gaps= 0 total=16961 # 1tukA.49.32 read from T0287.t04.many.frag # found chain 1tukA in template set T0287 49 :DFFKQMHTN 1tukA 33 :GCFCQYAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16962 # 1alu.49.125 read from T0287.t04.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1alu)L133 T0287 49 :DFFKQM 1alu 124 :QFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16963 # 1ei6A.49.222 read from T0287.t04.many.frag # found chain 1ei6A in template set T0287 49 :DFFKQMHTN 1ei6A 224 :SYFKRYHEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16964 # 1t98A.49.165 read from T0287.t04.many.frag # found chain 1t98A in template set T0287 49 :DFFKQMHTN 1t98A 166 :EIFDSIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16965 # 1g5tA.49.109 read from T0287.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0287)N57 (1g5tA)D118 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1g5tA 110 :QHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16966 # 1k78A.49.52 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1k78A 53 :DISRQL T0287 56 :T 1k78A 60 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=16968 # 1mgtA.49.113 read from T0287.t04.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1mgtA 114 :DLAKAL T0287 56 :TN 1mgtA 121 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16970 # 1jixA.49.328 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 49 :DFFKQMHTN 1jixA 329 :DILNKTRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16971 # 1vjxA.49.59 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 49 :DFFKQMHTN 1vjxA 48 :EIFRKMSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16972 # 1cr1A.49.109 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 49 :DFFKQMHTN 1cr1A 380 :QWFDELFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16973 # 1moq.50.202 read from T0287.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0287)K58 (1moq)D451 because N (gamma') conformation "forbidden" or filtered. T0287 50 :FFKQMHTN 1moq 443 :RIEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16974 # 1hz4A.50.222 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)H55 (1hz4A)T226 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1hz4A 221 :IYWQM T0287 57 :NK 1hz4A 228 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16976 # 1e6iA.50.83 read from T0287.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)H55 (1e6iA)N407 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQM 1e6iA 402 :NCRMY T0287 56 :TNK 1e6iA 408 :GEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16978 # 1zupA.50.293 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1zupA 282 :NLSYYLT T0287 58 :K 1zupA 290 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16980 # 2acvA.50.438 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 50 :FFKQMHTNK 2acvA 439 :MSRNAVVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16981 # 1ow4A.50.102 read from T0287.t04.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)H55 (1ow4A)N97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. T0287 50 :FFKQM 1ow4A 92 :CANQV T0287 57 :NK 1ow4A 99 :AY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16983 # 1h6kA.50.552 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 50 :FFKQMHTNK 1h6kA 572 :VFKTLAESD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16984 # 2f6lA.50.49 read from T0287.t04.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)M54 (2f6lA)Q87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQ 2f6lA 83 :DARS T0287 55 :HT 2f6lA 88 :HI T0287 58 :K 2f6lA 91 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=16987 # 1w33A.50.75 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 50 :FFKQMHTNK 1w33A 145 :ILEILKKNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16988 # 2cygA.50.57 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 50 :FFKQM 2cygA 86 :DVQSL T0287 57 :NK 2cygA 93 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16990 # 1zx4A.50.74 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1zx4A 216 :VGDEM T0287 57 :NK 1zx4A 223 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16992 # 1ail.50.45 read from T0287.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0287)N57 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1ail 46 :RGSTLGL T0287 58 :K 1ail 54 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=16994 # 1sdiA.50.94 read from T0287.t04.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1sdiA 95 :LERKLSS T0287 58 :K 1sdiA 103 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16996 # 1wer.50.294 read from T0287.t04.many.frag # found chain 1wer in training set T0287 50 :FFKQMHTNK 1wer 1008 :ELRTLSNER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16997 # 1u0fA.50.227 read from T0287.t04.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1u0fA 227 :WFLEAA T0287 57 :NK 1u0fA 234 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16999 # 1z7lA.50.46 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 T0287 50 :FFKQMHTN 1z7lA 662 :NVNQYLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17000 # 1jqnA.50.40 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 50 :FFKQMHTNK 1jqnA 41 :LSKSSRAGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17001 # 1nd4A.50.118 read from T0287.t04.many.frag # found chain 1nd4A in template set T0287 50 :FFKQMHTNK 1nd4A 119 :AMRRLHTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17002 # 1tukA.50.33 read from T0287.t04.many.frag # found chain 1tukA in template set T0287 50 :FFKQMHTNK 1tukA 34 :CFCQYAKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17003 # 1jeyA.50.523 read from T0287.t04.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)N57 (1jeyA)P531 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1jeyA 524 :EFKELVY T0287 58 :K 1jeyA 532 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=17005 # 1k78A.50.53 read from T0287.t04.many.frag # found chain 1k78A in template set T0287 50 :FFKQMHTNK 1k78A 54 :ISRQLRVSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17006 # 1tu9A.50.11 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 50 :FFKQMHTNK 1tu9A 10 :SYGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=17007 # 1j2zA.50.212 read from T0287.t04.many.frag # found chain 1j2zA in template set T0287 50 :FFKQMHTNK 1j2zA 213 :LYKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17008 # 1sw5B.50.248 read from T0287.t04.many.frag # found chain 1sw5B in template set T0287 50 :FFKQMHTNK 1sw5B 249 :LNYQYDVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17009 # 1r71A.50.57 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 50 :FFKQMHTNK 1r71A 174 :IAKEIGKSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17010 # 1jixA.50.329 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 50 :FFKQMHTNK 1jixA 330 :ILNKTRAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17011 # 1g5tA.50.110 read from T0287.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0287)N57 (1g5tA)D118 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1g5tA 111 :HGKRMLA T0287 58 :K 1g5tA 119 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=17013 # 1ajsA.50.314 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 50 :FFKQMHTNK 1ajsA 315 :LFHEWTGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17014 # 1mgtA.50.114 read from T0287.t04.many.frag # found chain 1mgtA in training set T0287 50 :FFKQMHTNK 1mgtA 115 :LAKALNTSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17015 # 2cwyA.50.47 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 50 :FFKQMHTNK 2cwyA 48 :ALHQRRLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17016 # 1moq.51.203 read from T0287.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1moq 444 :IEQMLSQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17017 # 1hz4A.51.223 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1hz4A 222 :YWQMT T0287 57 :NKG 1hz4A 228 :DKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17019 # 2cygA.51.58 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQM 2cygA 87 :VQSL T0287 58 :KG 2cygA 94 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17021 # 1wer.51.295 read from T0287.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1wer 1009 :LRTLSNE T0287 59 :G 1wer 1017 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=17023 # 1w33A.51.76 read from T0287.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1w33A 146 :LEILKK T0287 58 :KG 1w33A 153 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17025 # 2acvA.51.439 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 51 :FKQMHTNKG 2acvA 440 :SRNAVVDGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17026 # 1e6iA.51.84 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 51 :FKQMHTNKG 1e6iA 403 :CRMYNGENT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17027 # 1sdiA.51.95 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 51 :FKQMHTNKG 1sdiA 96 :ERKLSSAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17028 # 1zupA.51.294 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)H55 (1zupA)L287 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQM 1zupA 283 :LSYY T0287 56 :TNKG 1zupA 288 :TDKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17030 # 1z7lA.51.47 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 51 :FKQMHTN 1z7lA 663 :VNQYLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17031 # 1ow4A.51.103 read from T0287.t04.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)K58 (1ow4A)Y100 because D (zeta) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1ow4A 93 :ANQVNGA T0287 59 :G 1ow4A 101 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=17033 # 1zx4A.51.75 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQM 1zx4A 217 :GDEM T0287 57 :NKG 1zx4A 223 :KNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17035 # 1u0fA.51.228 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 51 :FKQMHTNKG 1u0fA 228 :FLEAAKDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17036 # 1tu9A.51.12 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1tu9A 11 :YGRCCAS T0287 59 :G 1tu9A 19 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=17038 # 1he1A.51.86 read from T0287.t04.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1he1A 181 :LQQWGTT T0287 59 :G 1he1A 189 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=17040 # 1h6kA.51.553 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H55 (1h6kA)A577 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQM 1h6kA 573 :FKTL T0287 56 :TNKG 1h6kA 578 :ESDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17042 # 2f6lA.51.50 read from T0287.t04.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQM 2f6lA 84 :ARSQ T0287 56 :TNKG 2f6lA 89 :IDPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17044 # 1k78A.51.54 read from T0287.t04.many.frag # found chain 1k78A in template set T0287 51 :FKQMHTNKG 1k78A 55 :SRQLRVSHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17045 # 1j2zA.51.213 read from T0287.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0287)G59 (1j2zA)P222 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1j2zA 214 :YKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17046 # 1q79A.51.347 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 51 :FKQMHTNKG 1q79A 348 :TDEILLSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17047 # 1tukA.51.34 read from T0287.t04.many.frag # found chain 1tukA in template set T0287 51 :FKQMHTNKG 1tukA 35 :FCQYAKDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17048 # 1n69A.51.16 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)T56 (1n69A)T20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1n69A)T23 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMH 1n69A 15 :QTAVR T0287 57 :NK 1n69A 21 :NS Number of specific fragments extracted= 2 number of extra gaps= 2 total=17050 # 1ail.51.46 read from T0287.t04.many.frag # found chain 1ail in template set T0287 51 :FKQMHTNKG 1ail 47 :GSTLGLNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17051 # 1ajsA.51.315 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 51 :FKQMHTNKG 1ajsA 316 :FHEWTGNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17052 # 2bmaA.51.35 read from T0287.t04.many.frag # found chain 2bmaA in template set Warning: unaligning (T0287)N57 (2bmaA)N17 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHT 2bmaA 11 :VMKLDP T0287 58 :KG 2bmaA 18 :QV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17054 # 1jqnA.51.41 read from T0287.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1jqnA 42 :SKSSRA T0287 58 :KG 1jqnA 49 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=17056 # 1sw5B.51.249 read from T0287.t04.many.frag # found chain 1sw5B in template set Warning: unaligning (T0287)G59 (1sw5B)K258 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1sw5B 250 :NYQYDVEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17057 # 1jeyA.51.524 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 51 :FKQMHTNKG 1jeyA 525 :FKELVYPPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17058 # 1z21A.51.62 read from T0287.t04.many.frag # found chain 1z21A in template set T0287 51 :FKQMHTNKG 1z21A 100 :LQQFDSFGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17059 # 1jixA.51.330 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 51 :FKQMHTNKG 1jixA 331 :LNKTRAKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17060 # 2cygA.52.59 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 52 :KQM 2cygA 88 :QSL T0287 57 :NKGA 2cygA 93 :NPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17062 # 1sdiA.52.96 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 52 :KQMHTNKGA 1sdiA 97 :RKLSSAKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17063 # 1hz4A.52.224 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 52 :KQMHTNKGA 1hz4A 223 :WQMTGDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17064 # 1wer.52.296 read from T0287.t04.many.frag # found chain 1wer in training set T0287 52 :KQMHTNKGA 1wer 1010 :RTLSNERGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17065 # 1zupA.52.295 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 52 :KQMHTNKGA 1zupA 284 :SYYLTDKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17066 # 1moq.52.204 read from T0287.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1moq 445 :EQMLSQD T0287 60 :A 1moq 453 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=17068 # 2acvA.52.440 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)G59 (2acvA)G448 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 2acvA 441 :RNAVVDG T0287 60 :A 2acvA 449 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=17070 # 1z7lA.52.48 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 52 :KQMHTN 1z7lA 664 :NQYLTD T0287 60 :A 1z7lA 672 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=17072 # 1w33A.52.77 read from T0287.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 52 :KQMHT 1w33A 147 :EILKK T0287 58 :KGA 1w33A 153 :SEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=17074 # 1tu9A.52.13 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 52 :KQMHTNKGA 1tu9A 12 :GRCCASTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17075 # 1e6iA.52.85 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 52 :KQMHTNKGA 1e6iA 404 :RMYNGENTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17076 # 1he1A.52.87 read from T0287.t04.many.frag # found chain 1he1A in template set T0287 52 :KQMHTNKGA 1he1A 182 :QQWGTTGGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17077 # 1u0fA.52.229 read from T0287.t04.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1u0fA 229 :LEAA T0287 57 :NKGA 1u0fA 234 :DPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17079 # 1zx4A.52.76 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. T0287 52 :KQM 1zx4A 218 :DEM T0287 56 :TNKGA 1zx4A 222 :NKNLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17081 # 1k78A.52.55 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 1k78A 56 :RQL T0287 56 :TNKGA 1k78A 60 :VSHGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=17083 # 1q79A.52.348 read from T0287.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)N57 (1q79A)S354 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMHT 1q79A 349 :DEILL T0287 58 :KGA 1q79A 355 :KAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17085 # 2f6lA.52.51 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 52 :KQMHTNKGA 2f6lA 85 :RSQHIDPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17086 # 1fipA.52.78 read from T0287.t04.many.frag # found chain 1fipA in template set T0287 52 :KQMHTNKGA 1fipA 79 :LMMGINRGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17087 # 1sw5B.52.250 read from T0287.t04.many.frag # found chain 1sw5B in template set T0287 52 :KQMHTNKGA 1sw5B 251 :YQYDVEKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17088 # 1w9cA.52.195 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 52 :KQMHTNKGA 1w9cA 902 :QNVAQEEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17089 # 1y0zA.52.44 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 52 :KQMHTNKGA 1y0zA 45 :QTIKTQKHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17090 # 1n69A.52.17 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)N57 (1n69A)N21 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1n69A)T23 because G (3-10) conformation "forbidden" or filtered. T0287 52 :KQMHT 1n69A 16 :TAVRT T0287 58 :K 1n69A 22 :S T0287 60 :A 1n69A 24 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=17093 # 1jixA.52.331 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 52 :KQMHTNKGA 1jixA 332 :NKTRAKKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17094 # 1ykjA.52.368 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 52 :KQMHTNKGA 1ykjA 1369 :EYYLGSEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17095 # 2dpmA.52.71 read from T0287.t04.many.frag # found chain 2dpmA in training set T0287 52 :KQMHTNKGA 2dpmA 72 :QQIKDNPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17096 # 1ail.52.47 read from T0287.t04.many.frag # found chain 1ail in template set T0287 52 :KQMHTNKGA 1ail 48 :STLGLNIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17097 # 2a6sA.52.13 read from T0287.t04.many.frag # found chain 2a6sA in template set T0287 52 :KQMHTNKGA 2a6sA 14 :LYWQETDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17098 # 1h6kA.52.554 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 52 :KQMHTNKGA 1h6kA 574 :KTLAESDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17099 # 1ow4A.52.104 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 52 :KQMHTNKGA 1ow4A 94 :NQVNGAYPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17100 # 1t98A.52.168 read from T0287.t04.many.frag # found chain 1t98A in template set T0287 52 :KQMHTNKGA 1t98A 169 :DSIDLTQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17101 # 1sdiA.53.97 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 53 :QMHTNKGAL 1sdiA 98 :KLSSAKGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17102 # 2cygA.53.60 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 53 :QM 2cygA 89 :SL T0287 57 :NKGAL 2cygA 93 :NPSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17104 # 1zupA.53.296 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHT 1zupA 285 :YYLT T0287 58 :KGAL 1zupA 290 :KNYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=17106 # 1wer.53.297 read from T0287.t04.many.frag # found chain 1wer in training set T0287 53 :QMHTNKGAL 1wer 1011 :TLSNERGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17107 # 1hz4A.53.225 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)H55 (1hz4A)T226 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QM 1hz4A 224 :QM T0287 56 :TNKGAL 1hz4A 227 :GDKAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17109 # 1z7lA.53.49 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 53 :QMHT 1z7lA 665 :QYLT T0287 60 :AL 1z7lA 672 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17111 # 1tu9A.53.14 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHTN 1tu9A 13 :RCCAS T0287 59 :GAL 1tu9A 19 :GFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17113 # 2acvA.53.441 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)N57 (2acvA)D446 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QMHT 2acvA 442 :NAVV T0287 59 :GAL 2acvA 448 :GSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17115 # 1moq.53.205 read from T0287.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0287)K58 (1moq)D451 because N (gamma') conformation "forbidden" or filtered. T0287 53 :QMHTN 1moq 446 :QMLSQ T0287 59 :GAL 1moq 452 :KRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17117 # 1w33A.53.78 read from T0287.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 53 :QMHT 1w33A 148 :ILKK T0287 58 :KGAL 1w33A 153 :SEHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17119 # 1he1A.53.88 read from T0287.t04.many.frag # found chain 1he1A in template set T0287 53 :QMHTNKGAL 1he1A 183 :QWGTTGGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17120 # 1zx4A.53.77 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1zx4A 219 :EMG T0287 57 :NKGAL 1zx4A 223 :KNLEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17122 # 1k78A.53.56 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 53 :QMHTNK 1k78A 57 :QLRVSH T0287 60 :AL 1k78A 64 :CV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17124 # 2f6lA.53.52 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 53 :QMHTNKGAL 2f6lA 86 :SQHIDPDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17125 # 1e6iA.53.86 read from T0287.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)H55 (1e6iA)N407 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QM 1e6iA 405 :MY T0287 56 :TNKGAL 1e6iA 408 :GENTSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17127 # 1u0fA.53.230 read from T0287.t04.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1u0fA 230 :EAA T0287 57 :NKGAL 1u0fA 234 :DPSAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17129 # 1ykjA.53.369 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 53 :QMHTNKGAL 1ykjA 1370 :YYLGSEAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17130 # 1y0zA.53.45 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 53 :QMHTNKGAL 1y0zA 46 :TIKTQKHYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17131 # 1urjA.53.604 read from T0287.t04.many.frag # found chain 1urjA in template set T0287 53 :QMHTNKGAL 1urjA 605 :TIITNREAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17132 # 2bnxA.53.245 read from T0287.t04.many.frag # found chain 2bnxA in template set T0287 53 :QMHTNKGAL 2bnxA 376 :MEMDDFGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17133 # 1w9cA.53.196 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 53 :QMHTNKGAL 1w9cA 903 :NVAQEEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17134 # 1q79A.53.349 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 53 :QMHTNKGAL 1q79A 350 :EILLSKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17135 # 1fipA.53.79 read from T0287.t04.many.frag # found chain 1fipA in template set T0287 53 :QMHTNKGAL 1fipA 80 :MMGINRGTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17136 # 1tffA.53.119 read from T0287.t04.many.frag # found chain 1tffA in template set T0287 53 :QMHTNKGAL 1tffA 120 :KVFNDQSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17137 # 1jixA.53.332 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 53 :QMHTNKGAL 1jixA 333 :KTRAKKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17138 # 1dk0A.53.138 read from T0287.t04.many.frag # found chain 1dk0A in training set T0287 53 :QMHTNKGAL 1dk0A 139 :LMSGDTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17139 # 1tzvA.53.52 read from T0287.t04.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)N57 (1tzvA)N57 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMHT 1tzvA 53 :GIKE T0287 58 :KGAL 1tzvA 58 :LSMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17141 # 1b25A.53.375 read from T0287.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0287)N57 (1b25A)R380 because L (left) conformation "forbidden" or filtered. T0287 53 :QMHT 1b25A 376 :DIAY T0287 58 :KGAL 1b25A 381 :KGEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17143 # 2dpmA.53.72 read from T0287.t04.many.frag # found chain 2dpmA in training set T0287 53 :QMHTNKGAL 2dpmA 73 :QIKDNPQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17144 # 1z21A.53.64 read from T0287.t04.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 53 :QMHTN 1z21A 102 :QFDSF T0287 59 :GAL 1z21A 108 :KRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=17146 # 1sdiA.54.98 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 54 :MHTNKGALD 1sdiA 99 :LSSAKGALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17147 # 2cygA.54.61 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :M 2cygA 90 :L T0287 58 :KGALD 2cygA 94 :PSAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17149 # 1zupA.54.297 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHT 1zupA 286 :YLT T0287 58 :KGALD 1zupA 290 :KNYMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17151 # 1wer.54.298 read from T0287.t04.many.frag # found chain 1wer in training set T0287 54 :MHTNKGALD 1wer 1012 :LSNERGAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17152 # 1tu9A.54.15 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 54 :MHTNKGALD 1tu9A 14 :CCASTGFFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17153 # 1z7lA.54.50 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 54 :MHTN 1z7lA 666 :YLTD T0287 60 :ALD 1z7lA 672 :FVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17155 # 1hz4A.54.226 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)H55 (1hz4A)T226 because G (3-10) conformation "forbidden" or filtered. T0287 54 :M 1hz4A 225 :M T0287 56 :TNKGALD 1hz4A 227 :GDKAAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17157 # 1zx4A.54.78 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 54 :MHTNKGALD 1zx4A 220 :MGNKNLEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17158 # 1k78A.54.57 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 54 :MHT 1k78A 58 :LRV T0287 58 :K 1k78A 62 :H T0287 60 :ALD 1k78A 64 :CVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=17161 # 1dk0A.54.139 read from T0287.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1dk0A 140 :MS T0287 57 :NKGALD 1dk0A 143 :DTGALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17163 # 2acvA.54.442 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :MHTN 2acvA 443 :AVVD T0287 59 :GALD 2acvA 448 :GSSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17165 # 1he1A.54.89 read from T0287.t04.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1he1A)G189 because Y (epsilon') conformation "forbidden" or filtered. T0287 54 :MHTN 1he1A 184 :WGTT T0287 60 :ALD 1he1A 190 :AAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17167 # 2f6lA.54.53 read from T0287.t04.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)M54 (2f6lA)Q87 because G (3-10) conformation "forbidden" or filtered. T0287 55 :HTNKGALD 2f6lA 88 :HIDPDYVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=17168 # 1w33A.54.79 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 54 :MHTNKGALD 1w33A 149 :LKKNSEHYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17169 # 1zs4A.54.33 read from T0287.t04.many.frag # found chain 1zs4A in template set T0287 54 :MHTNKGALD 1zs4A 33 :VGVDKSQIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17170 # 2bnxA.54.246 read from T0287.t04.many.frag # found chain 2bnxA in template set T0287 54 :MHTNKGALD 2bnxA 377 :EMDDFGEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17171 # 1y0zA.54.46 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 54 :MHTNKGALD 1y0zA 47 :IKTQKHYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17172 # 1fipA.54.80 read from T0287.t04.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1fipA 81 :M T0287 56 :TNKGALD 1fipA 83 :INRGTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17174 # 1ho8A.54.254 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 54 :MHTNKGALD 1ho8A 253 :LTFNPVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17175 # 1xpjA.54.50 read from T0287.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 54 :MHTN 1xpjA 51 :MRTY T0287 59 :GALD 1xpjA 56 :GNVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17177 # 1ykjA.54.370 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 54 :MHTNKGALD 1ykjA 1371 :YLGSEAGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17178 # 1e6iA.54.87 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 54 :MHTNKGALD 1e6iA 406 :YNGENTSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17179 # 1moq.54.206 read from T0287.t04.many.frag # found chain 1moq in training set T0287 54 :MHTNKGALD 1moq 447 :MLSQDKRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17180 # 1tffA.54.120 read from T0287.t04.many.frag # found chain 1tffA in template set T0287 54 :MHTNKGALD 1tffA 121 :VFNDQSASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17181 # 1cxzB.54.53 read from T0287.t04.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)H55 (1cxzB)G67 because L (left) conformation "forbidden" or filtered. T0287 54 :M 1cxzB 66 :L T0287 56 :TNKGALD 1cxzB 68 :RSLGPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17183 # 1w9cA.54.197 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 54 :MHTNKGALD 1w9cA 904 :VAQEEAAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17184 # 1cg5B.54.90 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 54 :MHTNKGALD 1cg5B 91 :IGVDTQNFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17185 # 1j75A.54.34 read from T0287.t04.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)H55 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0287 54 :M 1j75A 138 :C T0287 56 :TNKGALD 1j75A 140 :VPKKTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17187 # 1z21A.54.65 read from T0287.t04.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)N57 (1z21A)F106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 54 :MHT 1z21A 103 :FDS T0287 59 :GALD 1z21A 108 :KRWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17189 # 1u0fA.54.231 read from T0287.t04.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1u0fA 231 :AA T0287 57 :NKGALD 1u0fA 234 :DPSAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17191 # 1sdiA.55.99 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 55 :HTNKGALDK 1sdiA 100 :SSAKGALDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17192 # 2cygA.55.62 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDK 2cygA 93 :NPSAAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17193 # 1tu9A.55.16 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 55 :HTNKGALDK 1tu9A 15 :CASTGFFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17194 # 1wer.55.299 read from T0287.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 1wer 1013 :SN T0287 58 :KGALDK 1wer 1016 :RGAQQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=17196 # 1zupA.55.298 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)H55 (1zupA)L287 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1zupA 288 :TDKNYMNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=17197 # 1hz4A.55.227 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1hz4A 226 :T T0287 57 :NKGALDK 1hz4A 228 :DKAAAAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17199 # 1z7lA.55.51 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 55 :HTN 1z7lA 667 :LTD T0287 60 :ALDK 1z7lA 672 :FVER Number of specific fragments extracted= 2 number of extra gaps= 1 total=17201 # 1dk0A.55.140 read from T0287.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1dk0A 141 :S T0287 57 :NKGALDK 1dk0A 143 :DTGALET Number of specific fragments extracted= 2 number of extra gaps= 1 total=17203 # 1zx4A.55.79 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1zx4A 221 :G T0287 57 :NKGALDK 1zx4A 223 :KNLEFDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17205 # 1k78A.55.58 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1k78A 60 :VSHGCVSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17206 # 2acvA.55.443 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HTN 2acvA 444 :VVD T0287 59 :GALDK 2acvA 448 :GSSLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17208 # 1zc6A.55.221 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)K58 (1zc6A)D225 because E (beta_S) conformation "forbidden" or filtered. T0287 55 :HTN 1zc6A 222 :ARV T0287 59 :GALDK 1zc6A 226 :PEADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17210 # 2bnxA.55.247 read from T0287.t04.many.frag # found chain 2bnxA in template set T0287 55 :HTNKGALDK 2bnxA 378 :MDDFGEVFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17211 # 1he1A.55.90 read from T0287.t04.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HTN 1he1A 185 :GTT T0287 59 :GALDK 1he1A 189 :GAASQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17213 # 1e6iA.55.88 read from T0287.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HTNK 1e6iA 407 :NGEN T0287 60 :ALDK 1e6iA 412 :SYYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17215 # 1cxzB.55.54 read from T0287.t04.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)H55 (1cxzB)G67 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1cxzB 68 :RSLGPVEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17216 # 1xpjA.55.51 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 55 :HTNKGALDK 1xpjA 52 :RTYEGNVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17217 # 1cg5B.55.91 read from T0287.t04.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)N57 (1cg5B)D94 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 1cg5B 92 :GV T0287 58 :KGALDK 1cg5B 95 :TQNFKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17219 # 1zs4A.55.34 read from T0287.t04.many.frag # found chain 1zs4A in template set T0287 55 :HTNKGALDK 1zs4A 34 :GVDKSQISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17220 # 1tffA.55.121 read from T0287.t04.many.frag # found chain 1tffA in template set T0287 55 :HTNKGALDK 1tffA 122 :FNDQSASDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17221 # 2f6lA.55.54 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 55 :HTNKGALDK 2f6lA 88 :HIDPDYVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17222 # 1y6xA.55.34 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 55 :HTNKGALDK 1y6xA 35 :DGGVHALGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17223 # 1j75A.55.35 read from T0287.t04.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)N57 (1j75A)P141 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 1j75A 139 :QV T0287 58 :KGALDK 1j75A 142 :KKTLNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17225 # 1w33A.55.80 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 55 :HTNKGALDK 1w33A 150 :KKNSEHYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17226 # 1ho8A.55.255 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 55 :HTNKGALDK 1ho8A 254 :TFNPVFANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17227 # 1ykjA.55.371 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 55 :HTNKGALDK 1ykjA 1372 :LGSEAGLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17228 # 1urjA.55.606 read from T0287.t04.many.frag # found chain 1urjA in template set Warning: unaligning (T0287)T56 (1urjA)T608 because G (3-10) conformation "forbidden" or filtered. T0287 55 :H 1urjA 607 :I T0287 57 :NKGALDK 1urjA 609 :NREALHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17230 # 1z21A.55.66 read from T0287.t04.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 55 :HTN 1z21A 104 :DSF T0287 59 :GALDK 1z21A 108 :KRWEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17232 # 1fipA.55.81 read from T0287.t04.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)N57 (1fipA)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 1fipA 82 :GI T0287 58 :KGALDK 1fipA 85 :RGTLRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17234 # 1ikpA.55.301 read from T0287.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)H55 (1ikpA)R302 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1ikpA 303 :LSWNQVDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17235 # 1sdiA.56.100 read from T0287.t04.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 1sdiA 101 :S T0287 58 :KGALDKV 1sdiA 103 :KGALDTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17237 # 1tu9A.56.17 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 56 :TNKGALDKV 1tu9A 16 :ASTGFFDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17238 # 2cygA.56.63 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDKV 2cygA 93 :NPSAAGDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=17239 # 1wer.56.300 read from T0287.t04.many.frag # found chain 1wer in training set T0287 56 :TNKGALDKV 1wer 1014 :NERGAQQHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17240 # 1dk0A.56.141 read from T0287.t04.many.frag # found chain 1dk0A in training set T0287 56 :TNKGALDKV 1dk0A 142 :GDTGALETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17241 # 1zc6A.56.222 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 56 :TNKGALDKV 1zc6A 223 :RVDPEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17242 # 1zupA.56.299 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 56 :TNKGALDKV 1zupA 288 :TDKNYMNTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17243 # 1xpjA.56.52 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 56 :TNKGALDKV 1xpjA 53 :TYEGNVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17244 # 1hz4A.56.228 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 56 :TNKGALDKV 1hz4A 227 :GDKAAAANW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17245 # 1ikpA.56.302 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 56 :TNKGALDKV 1ikpA 303 :LSWNQVDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17246 # 1k78A.56.59 read from T0287.t04.many.frag # found chain 1k78A in template set T0287 56 :TNKGALDKV 1k78A 60 :VSHGCVSKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17247 # 2bnxA.56.248 read from T0287.t04.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)N57 (2bnxA)D380 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 2bnxA 379 :D T0287 58 :KGALDKV 2bnxA 381 :FGEVFQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17249 # 1z7lA.56.52 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 56 :T 1z7lA 668 :T T0287 60 :ALDKV 1z7lA 672 :FVERT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17251 # 1zx4A.56.80 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 56 :TNKGALDKV 1zx4A 222 :NKNLEFDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17252 # 1q2lA.56.840 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)K58 (1q2lA)P866 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TN 1q2lA 864 :QA T0287 59 :G 1q2lA 867 :Q T0287 61 :LDKV 1q2lA 869 :LGEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=17255 # 1cxzB.56.55 read from T0287.t04.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)N57 (1cxzB)S69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1cxzB)G71 because H (helix) conformation "forbidden" or filtered. T0287 56 :T 1cxzB 68 :R T0287 58 :K 1cxzB 70 :L T0287 60 :ALDKV 1cxzB 72 :PVELL Number of specific fragments extracted= 3 number of extra gaps= 2 total=17258 # 1y6xA.56.35 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 56 :TNKGALDKV 1y6xA 36 :GGVHALGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17259 # 1j75A.56.36 read from T0287.t04.many.frag # found chain 1j75A in template set T0287 56 :TNKGALDKV 1j75A 140 :VPKKTLNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17260 # 1zs4A.56.35 read from T0287.t04.many.frag # found chain 1zs4A in template set T0287 56 :TNKGALDKV 1zs4A 35 :VDKSQISRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17261 # 1ykjA.56.372 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 56 :TNKGALDKV 1ykjA 1373 :GSEAGLATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17262 # 1tzvA.56.55 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 56 :TNKGALDKV 1tzvA 56 :ENLSMIDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17263 # 1e6iA.56.89 read from T0287.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)K58 (1e6iA)N410 because G (3-10) conformation "forbidden" or filtered. T0287 56 :TN 1e6iA 408 :GE T0287 59 :GALDKV 1e6iA 411 :TSYYKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17265 # 1cg5B.56.92 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 56 :TNKGALDKV 1cg5B 93 :VDTQNFKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17266 # 2acvA.56.444 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TN 2acvA 445 :VD T0287 59 :GALDKV 2acvA 448 :GSSLIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17268 # 1he1A.56.91 read from T0287.t04.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TN 1he1A 186 :TT T0287 59 :GALDKV 1he1A 189 :GAASQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17270 # 2aqlA.56.58 read from T0287.t04.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKV 2aqlA 212 :YAVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17271 # 1tffA.56.122 read from T0287.t04.many.frag # found chain 1tffA in template set T0287 56 :TNKGALDKV 1tffA 123 :NDQSASDHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17272 # 1z21A.56.67 read from T0287.t04.many.frag # found chain 1z21A in template set T0287 56 :TNKGALDKV 1z21A 105 :SFGKRWEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17273 # 1qoyA.56.216 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 56 :TNKGALDKV 1qoyA 202 :VVEGKLIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17274 # 1w33A.56.81 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 56 :TNKGALDKV 1w33A 151 :KNSEHYNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=17275 # 1tu9A.57.18 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 57 :NKGALDKVL 1tu9A 17 :STGFFDDFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17276 # 1zc6A.57.223 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 57 :NKGALDKVL 1zc6A 224 :VDPEADALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17277 # 1ikpA.57.303 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 57 :NKGALDKVL 1ikpA 304 :SWNQVDQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17278 # 2cygA.57.64 read from T0287.t04.many.frag # found chain 2cygA in template set T0287 57 :NKGALDKVL 2cygA 93 :NPSAAGDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17279 # 1xpjA.57.53 read from T0287.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 57 :N 1xpjA 54 :Y T0287 59 :GALDKVL 1xpjA 56 :GNVGKIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17281 # 1dk0A.57.142 read from T0287.t04.many.frag # found chain 1dk0A in training set T0287 57 :NKGALDKVL 1dk0A 143 :DTGALETAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17282 # 1sdiA.57.101 read from T0287.t04.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 57 :N 1sdiA 102 :A T0287 59 :GALDKVL 1sdiA 104 :GALDTLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17284 # 1wer.57.301 read from T0287.t04.many.frag # found chain 1wer in training set T0287 57 :NKGALDKVL 1wer 1015 :ERGAQQHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17285 # 1zx4A.57.81 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 57 :NKGALDKVL 1zx4A 223 :KNLEFDQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17286 # 2aqlA.57.59 read from T0287.t04.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVL 2aqlA 212 :YAVNEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17287 # 1q2lA.57.841 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)K58 (1q2lA)P866 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. T0287 57 :N 1q2lA 865 :A T0287 60 :ALDKVL 1q2lA 868 :TLGEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17289 # 1y6xA.57.36 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 57 :NKGALDKVL 1y6xA 37 :GVHALGKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17290 # 1hz4A.57.229 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 57 :NKGALDKVL 1hz4A 228 :DKAAAANWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17291 # 1k78A.57.60 read from T0287.t04.many.frag # found chain 1k78A in template set T0287 57 :NKGALDKVL 1k78A 61 :SHGCVSKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17292 # 1ykjA.57.373 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 57 :NKGALDKVL 1ykjA 1374 :SEAGLATIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17293 # 1z7lA.57.53 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 57 :N 1z7lA 669 :D T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17295 # 1tzvA.57.56 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 57 :NKGALDKVL 1tzvA 57 :NLSMIDDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17296 # 1cxzB.57.56 read from T0287.t04.many.frag # found chain 1cxzB in template set T0287 57 :NKGALDKVL 1cxzB 69 :SLGPVELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17297 # 1zupA.57.300 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1zupA 290 :KNYMNTRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17298 # 1j75A.57.37 read from T0287.t04.many.frag # found chain 1j75A in template set T0287 57 :NKGALDKVL 1j75A 141 :PKKTLNQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17299 # 1qoyA.57.217 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 57 :NKGALDKVL 1qoyA 203 :VEGKLIPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17300 # 1mw9X.57.555 read from T0287.t04.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)A60 (1mw9X)E559 because E (beta_S) conformation "forbidden" or filtered. T0287 57 :NKG 1mw9X 556 :HEA T0287 61 :LDKVL 1mw9X 560 :WKAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17302 # 2bnxA.57.249 read from T0287.t04.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)G59 (2bnxA)G382 because H (helix) conformation "forbidden" or filtered. T0287 57 :NK 2bnxA 380 :DF T0287 60 :ALDKVL 2bnxA 383 :EVFQII Number of specific fragments extracted= 2 number of extra gaps= 1 total=17304 # 1zs4A.57.36 read from T0287.t04.many.frag # found chain 1zs4A in template set T0287 57 :NKGALDKVL 1zs4A 36 :DKSQISRWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17305 # 1cg5B.57.93 read from T0287.t04.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)N57 (1cg5B)D94 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1cg5B 95 :TQNFKLLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=17306 # 1e6iA.57.90 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 57 :NKGALDKVL 1e6iA 409 :ENTSYYKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17307 # 1zk8A.57.107 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 57 :NKGALDKVL 1zk8A 108 :RDEEVRKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17308 # 1g3kA.57.66 read from T0287.t04.many.frag # found chain 1g3kA in template set Warning: unaligning (T0287)K58 (1g3kA)Q68 because L (left) conformation "forbidden" or filtered. T0287 57 :N 1g3kA 67 :H T0287 59 :GALDKVL 1g3kA 69 :GHLLKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17310 # 1zpyA.57.73 read from T0287.t04.many.frag # found chain 1zpyA in template set T0287 57 :NKGALDKVL 1zpyA 74 :CDPAFDKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17311 # 1ho8A.57.257 read from T0287.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N57 (1ho8A)N256 because D (zeta) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1ho8A 257 :PVFANELV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17312 # 1zc6A.58.224 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 58 :KGALDKVLR 1zc6A 225 :DPEADALLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17313 # 1tu9A.58.19 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1tu9A 19 :GFFDDFYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17314 # 1xpjA.58.54 read from T0287.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1xpjA 56 :GNVGKINI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17315 # 1y6xA.58.37 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 58 :KGALDKVLR 1y6xA 38 :VHALGKKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17316 # 1ikpA.58.304 read from T0287.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)A60 (1ikpA)Q307 because G (3-10) conformation "forbidden" or filtered. T0287 58 :KG 1ikpA 305 :WN T0287 61 :LDKVLR 1ikpA 308 :VDQVIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17318 # 1dk0A.58.143 read from T0287.t04.many.frag # found chain 1dk0A in training set T0287 58 :KGALDKVLR 1dk0A 144 :TGALETALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17319 # 2aqlA.58.60 read from T0287.t04.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVLR 2aqlA 212 :YAVNEVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17320 # 1q2lA.58.842 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :KG 1q2lA 866 :PQ T0287 61 :LDKVLR 1q2lA 869 :LGEEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17322 # 2cygA.58.65 read from T0287.t04.many.frag # found chain 2cygA in template set T0287 58 :KGALDKVLR 2cygA 94 :PSAAGDWIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17323 # 1tzvA.58.57 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 58 :KGALDKVLR 1tzvA 58 :LSMIDDLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17324 # 2f5xA.58.285 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 58 :KGALDKVLR 2f5xA 274 :PEALQAKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17325 # 1qoyA.58.218 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 58 :KGALDKVLR 1qoyA 204 :EGKLIPELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17326 # 1zx4A.58.82 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 58 :KGALDKVLR 1zx4A 224 :NLEFDQLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17327 # 1zk8A.58.108 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 58 :KGALDKVLR 1zk8A 109 :DEEVRKAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17328 # 1hz4A.58.230 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 58 :KGALDKVLR 1hz4A 229 :KAAAANWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17329 # 1p4cA.58.318 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 58 :KGALDKVLR 1p4cA 319 :ETGVDEVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17330 # 1wer.58.302 read from T0287.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1wer 1017 :GAQQHVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17331 # 1mw9X.58.556 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 58 :KGALDKVLR 1mw9X 557 :EAEWKAVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17332 # 1po5A.58.119 read from T0287.t04.many.frag # found chain 1po5A in training set T0287 58 :KGALDKVLR 1po5A 139 :KRSVEERIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17333 # 1zpyA.58.74 read from T0287.t04.many.frag # found chain 1zpyA in template set T0287 58 :KGALDKVLR 1zpyA 75 :DPAFDKELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17334 # 1j75A.58.38 read from T0287.t04.many.frag # found chain 1j75A in template set T0287 58 :KGALDKVLR 1j75A 142 :KKTLNQVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17335 # 1z7lA.58.54 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 60 :ALDKVLR 1z7lA 672 :FVERTLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17336 # 1k78A.58.61 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 58 :K 1k78A 62 :H T0287 60 :ALDKVLR 1k78A 64 :CVSKILG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17338 # 1fjgT.58.73 read from T0287.t04.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1fjgT)N75 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLR 1fjgT 76 :AAARRKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=17339 # 1ykjA.58.374 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 58 :KGALDKVLR 1ykjA 1375 :EAGLATIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17340 # 1ho8A.58.258 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 58 :KGALDKVLR 1ho8A 257 :PVFANELVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17341 # 1zs4A.58.37 read from T0287.t04.many.frag # found chain 1zs4A in template set T0287 58 :KGALDKVLR 1zs4A 37 :KSQISRWKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17342 # 1sdiA.58.102 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 58 :KGALDKVLR 1sdiA 103 :KGALDTLGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17343 # 1cg5B.58.94 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 58 :KGALDKVLR 1cg5B 95 :TQNFKLLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17344 # 1cxzB.58.57 read from T0287.t04.many.frag # found chain 1cxzB in template set T0287 58 :KGALDKVLR 1cxzB 70 :LGPVELLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17345 # 1zc6A.59.225 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 59 :GALDKVLRN 1zc6A 226 :PEADALLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17346 # 1tu9A.59.20 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 59 :GALDKVLRN 1tu9A 19 :GFFDDFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17347 # 1y6xA.59.38 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 59 :GALDKVLRN 1y6xA 39 :HALGKKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17348 # 1ikpA.59.305 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 59 :GALDKVLRN 1ikpA 306 :NQVDQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17349 # 2f5xA.59.286 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 59 :GALDKVLRN 2f5xA 275 :EALQAKVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17350 # 1xpjA.59.55 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 59 :GALDKVLRN 1xpjA 56 :GNVGKINIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17351 # 1zx4A.59.83 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 59 :GALDKVLRN 1zx4A 225 :LEFDQLIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17352 # 1p4cA.59.319 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 59 :GALDKVLRN 1p4cA 320 :TGVDEVLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17353 # 1zk8A.59.109 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 59 :GALDKVLRN 1zk8A 110 :EEVRKAGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17354 # 2aqlA.59.61 read from T0287.t04.many.frag # found chain 2aqlA in template set T0287 59 :GALDKVLRN 2aqlA 212 :YAVNEVVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17355 # 1mw9X.59.557 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 59 :GALDKVLRN 1mw9X 558 :AEWKAVLDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17356 # 1tzvA.59.58 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 59 :GALDKVLRN 1tzvA 59 :SMIDDLISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17357 # 1ho8A.59.259 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 59 :GALDKVLRN 1ho8A 258 :VFANELVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17358 # 1q2lA.59.843 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17359 # 1fjgT.59.74 read from T0287.t04.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLRN 1fjgT 76 :AAARRKSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17360 # 2cygA.59.66 read from T0287.t04.many.frag # found chain 2cygA in template set T0287 59 :GALDKVLRN 2cygA 95 :SAAGDWIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17361 # 1or7A.59.46 read from T0287.t04.many.frag # found chain 1or7A in template set T0287 59 :GALDKVLRN 1or7A 44 :GDVPDVVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17362 # 1dk0A.59.144 read from T0287.t04.many.frag # found chain 1dk0A in training set T0287 59 :GALDKVLRN 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17363 # 1h6pA.59.129 read from T0287.t04.many.frag # found chain 1h6pA in template set T0287 59 :GALDKVLRN 1h6pA 172 :EKASKILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17364 # 1qoyA.59.219 read from T0287.t04.many.frag # found chain 1qoyA in template set Warning: unaligning (T0287)A60 (1qoyA)K206 because G (3-10) conformation "forbidden" or filtered. T0287 59 :G 1qoyA 205 :G T0287 61 :LDKVLRN 1qoyA 207 :LIPELKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17366 # 1po5A.59.120 read from T0287.t04.many.frag # found chain 1po5A in training set T0287 59 :GALDKVLRN 1po5A 140 :RSVEERIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17367 # 1a6m.59.128 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 59 :GALDKVLRN 1a6m 129 :GAMNKALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17368 # 1hz4A.59.231 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 59 :GALDKVLRN 1hz4A 230 :AAAANWLRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17369 # 1jk0B.59.240 read from T0287.t04.many.frag # found chain 1jk0B in template set T0287 59 :GALDKVLRN 1jk0B 241 :KIIEKIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17370 # 1ykjA.59.375 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 59 :GALDKVLRN 1ykjA 1376 :AGLATIAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17371 # 1xp8A.59.179 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 59 :GALDKVLRN 1xp8A 177 :GLQARLMSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17372 # 1cg5B.59.95 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 59 :GALDKVLRN 1cg5B 96 :QNFKLLGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17373 # 1dlwA.59.71 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 59 :GALDKVLRN 1dlwA 72 :GVSNAQFTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17374 # 1psrA.59.28 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 59 :GALDKVLRN 1psrA 29 :PSLLTMMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17375 # 1wa5C.59.393 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 59 :GALDKVLRN 1wa5C 394 :VLVTNIFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17376 # 1zc6A.60.226 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 60 :ALDKVLRNY 1zc6A 227 :EADALLRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17377 # 2f5xA.60.287 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 60 :ALDKVLRNY 2f5xA 276 :ALQAKVKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17378 # 1y6xA.60.39 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 60 :ALDKVLRNY 1y6xA 40 :ALGKKLLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17379 # 1mw9X.60.558 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 60 :ALDKVLRNY 1mw9X 559 :EWKAVLDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17380 # 1tu9A.60.21 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 60 :ALDKVLRNY 1tu9A 20 :FFDDFYRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17381 # 1tzvA.60.59 read from T0287.t04.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)Y68 (1tzvA)Y68 because G (3-10) conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1tzvA 60 :MIDDLISR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17382 # 1p4cA.60.320 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 60 :ALDKVLRNY 1p4cA 321 :GVDEVLTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17383 # 1zk8A.60.110 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 60 :ALDKVLRNY 1zk8A 111 :EVRKAGDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17384 # 1ikpA.60.306 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 60 :ALDKVLRNY 1ikpA 307 :QVDQVIRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17385 # 1qoyA.60.220 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 60 :ALDKVLRNY 1qoyA 206 :KLIPELKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17386 # 1h6pA.60.130 read from T0287.t04.many.frag # found chain 1h6pA in template set T0287 60 :ALDKVLRNY 1h6pA 173 :KASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17387 # 2aqlA.60.62 read from T0287.t04.many.frag # found chain 2aqlA in template set T0287 60 :ALDKVLRNY 2aqlA 213 :AVNEVVAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17388 # 1ho8A.60.260 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 60 :ALDKVLRNY 1ho8A 259 :FANELVQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17389 # 1fjgT.60.75 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 60 :ALDKVLRNY 1fjgT 76 :AAARRKSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17390 # 1psrA.60.29 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 60 :ALDKVLRNY 1psrA 30 :SLLTMMKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17391 # 1wa5C.60.394 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 60 :ALDKVLRNY 1wa5C 395 :LVTNIFLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17392 # 1xp8A.60.180 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 60 :ALDKVLRNY 1xp8A 178 :LQARLMSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17393 # 1bgf.60.100 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 60 :ALDKVLRNY 1bgf 100 :HVAVVISNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17394 # 1xpjA.60.56 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 60 :ALDKVLRNY 1xpjA 57 :NVGKINIHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17395 # 1q2lA.60.844 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1q2lA 869 :LGEEASKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17396 # 1a6m.60.129 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 60 :ALDKVLRNY 1a6m 130 :AMNKALELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17397 # 1po5A.60.121 read from T0287.t04.many.frag # found chain 1po5A in training set T0287 60 :ALDKVLRNY 1po5A 141 :SVEERIQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17398 # 1or7A.60.47 read from T0287.t04.many.frag # found chain 1or7A in template set T0287 60 :ALDKVLRNY 1or7A 45 :DVPDVVQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17399 # 1dk0A.60.145 read from T0287.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 T0287 60 :ALDKVLRN 1dk0A 146 :ALETALNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=17400 # 1zx4A.60.84 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 60 :ALDKVLRNY 1zx4A 226 :EFDQLIQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17401 # 1txjA.60.85 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 60 :ALDKVLRNY 1txjA 86 :EYSVYIKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17402 # 2cygA.60.67 read from T0287.t04.many.frag # found chain 2cygA in template set T0287 60 :ALDKVLRNY 2cygA 96 :AAGDWIRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17403 # 1jk0B.60.241 read from T0287.t04.many.frag # found chain 1jk0B in template set T0287 60 :ALDKVLRNY 1jk0B 242 :IIEKIITEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17404 # 1cfr.60.33 read from T0287.t04.many.frag # found chain 1cfr in template set T0287 60 :ALDKVLRNY 1cfr 34 :EFSKVLSGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17405 # 2bnlA.60.82 read from T0287.t04.many.frag # found chain 2bnlA in template set T0287 60 :ALDKVLRNY 2bnlA 83 :FLATALAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17406 # 1zc6A.61.227 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 61 :LDKVLRNYM 1zc6A 228 :ADALLRQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17407 # 2f5xA.61.288 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 61 :LDKVLRNYM 2f5xA 277 :LQAKVKQQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17408 # 1mw9X.61.559 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 61 :LDKVLRNYM 1mw9X 560 :WKAVLDHFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17409 # 1tu9A.61.22 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 61 :LDKVLRNYM 1tu9A 21 :FDDFYRHFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17410 # 1p4cA.61.321 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 61 :LDKVLRNYM 1p4cA 322 :VDEVLTLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17411 # 1y6xA.61.40 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 61 :LDKVLRNYM 1y6xA 41 :LGKKLLEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17412 # 1qoyA.61.221 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 61 :LDKVLRNYM 1qoyA 207 :LIPELKNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17413 # 1zk8A.61.111 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 61 :LDKVLRNYM 1zk8A 112 :VRKAGDGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17414 # 1bgf.61.101 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 61 :LDKVLRNYM 1bgf 101 :VAVVISNCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17415 # 1txjA.61.86 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 61 :LDKVLRNYM 1txjA 87 :YSVYIKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17416 # 1fjgT.61.76 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 61 :LDKVLRNYM 1fjgT 77 :AARRKSRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17417 # 1tzvA.61.60 read from T0287.t04.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)Y68 (1tzvA)Y68 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1tzvA 61 :IDDLISR T0287 69 :M 1tzvA 69 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17419 # 1h6pA.61.131 read from T0287.t04.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 61 :LDKVLRNY 1h6pA 174 :ASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17420 # 1psrA.61.30 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 61 :LDKVLRNYM 1psrA 31 :LLTMMKENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17421 # 1wa5C.61.395 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 61 :LDKVLRNYM 1wa5C 396 :VTNIFLAHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17422 # 1xp8A.61.181 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 61 :LDKVLRNYM 1xp8A 179 :QARLMSQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17423 # 1ho8A.61.261 read from T0287.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N67 (1ho8A)K266 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y68 (1ho8A)Y267 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLR 1ho8A 260 :ANELVQ T0287 69 :M 1ho8A 268 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17425 # 1ikpA.61.307 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 61 :LDKVLRNYM 1ikpA 308 :VDQVIRNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17426 # 1a6m.61.130 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 61 :LDKVLRNYM 1a6m 131 :MNKALELFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17427 # 1or7A.61.48 read from T0287.t04.many.frag # found chain 1or7A in template set T0287 61 :LDKVLRNYM 1or7A 46 :VPDVVQEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17428 # 1sz9A.61.66 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1sz9A 67 :LDSICKNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17429 # 2aqlA.61.63 read from T0287.t04.many.frag # found chain 2aqlA in template set T0287 61 :LDKVLRNYM 2aqlA 214 :VNEVVAGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17430 # 1cfr.61.34 read from T0287.t04.many.frag # found chain 1cfr in template set T0287 61 :LDKVLRNYM 1cfr 35 :FSKVLSGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17431 # 1zx4A.61.85 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 61 :LDKVLRNYM 1zx4A 227 :FDQLIQNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17432 # 2bnlA.61.83 read from T0287.t04.many.frag # found chain 2bnlA in template set T0287 61 :LDKVLRNYM 2bnlA 84 :LATALAEFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17433 # 1jk0B.61.242 read from T0287.t04.many.frag # found chain 1jk0B in template set T0287 61 :LDKVLRNYM 1jk0B 243 :IEKIITEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17434 # 1q2lA.61.845 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)Y68 (1q2lA)L876 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK T0287 69 :M 1q2lA 877 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=17436 # 2au5A.61.84 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 61 :LDKVLRNYM 2au5A 82 :LKGELARLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17437 # 1xpjA.61.57 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 61 :LDKVLRNYM 1xpjA 58 :VGKINIHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17438 # 1hs6A.61.424 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 61 :LDKVLRNYM 1hs6A 424 :WKDFLYSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17439 # 1zc6A.62.228 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 62 :DKVLRNYMK 1zc6A 229 :DALLRQAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17440 # 2f5xA.62.289 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 62 :DKVLRNYMK 2f5xA 278 :QAKVKQQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17441 # 1bgf.62.102 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 62 :DKVLRNYMK 1bgf 102 :AVVISNCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17442 # 1qoyA.62.222 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 62 :DKVLRNYMK 1qoyA 208 :IPELKNKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17443 # 1txjA.62.87 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 62 :DKVLRNYMK 1txjA 88 :SVYIKNYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17444 # 1mw9X.62.560 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 62 :DKVLRNYMK 1mw9X 561 :KAVLDHFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17445 # 1wa5C.62.396 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 62 :DKVLRNYMK 1wa5C 397 :TNIFLAHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17446 # 1tu9A.62.23 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 62 :DKVLRNYMK 1tu9A 22 :DDFYRHFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17447 # 1tzvA.62.61 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 62 :DKVLRNYMK 1tzvA 62 :DDLISRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17448 # 1psrA.62.31 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 62 :DKVLRNYMK 1psrA 32 :LTMMKENFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17449 # 1y6xA.62.41 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 62 :DKVLRNYMK 1y6xA 42 :GKKLLEEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17450 # 1fjgT.62.77 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 62 :DKVLRNYMK 1fjgT 78 :ARRKSRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17451 # 1xp8A.62.182 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 62 :DKVLRNYMK 1xp8A 180 :ARLMSQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17452 # 1hs6A.62.425 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 62 :DKVLRNYMK 1hs6A 425 :KDFLYSYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17453 # 1zk8A.62.112 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 62 :DKVLRNYMK 1zk8A 113 :RKAGDGIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17454 # 1h6pA.62.132 read from T0287.t04.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 62 :DKVLRNY 1h6pA 175 :SKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17455 # 1sz9A.62.67 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 62 :DKVLRNYMK 1sz9A 68 :DSICKNVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17456 # 1p4cA.62.322 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 62 :DKVLRNYMK 1p4cA 323 :DEVLTLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17457 # 1ho8A.62.262 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 62 :DKVLRNYMK 1ho8A 261 :NELVQKYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17458 # 2au5A.62.85 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 62 :DKVLRNYMK 2au5A 83 :KGELARLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17459 # 1j5wA.62.221 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 62 :DKVLRNYMK 1j5wA 210 :FRHFDEYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17460 # 1ytaA.62.111 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 62 :DKVLRNYMK 1ytaA 112 :RRFLFKYMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17461 # 2mhr.62.47 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 62 :DKVLRNYMK 2mhr 48 :VKVTTNHFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17462 # 1hw1A.62.185 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 62 :DKVLRNYMK 1hw1A 186 :RSLALGFYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17463 # 1a6m.62.131 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 62 :DKVLRNYMK 1a6m 132 :NKALELFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17464 # 1po5A.62.123 read from T0287.t04.many.frag # found chain 1po5A in training set T0287 62 :DKVLRNYMK 1po5A 143 :EERIQEEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17465 # 1i60A.62.117 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 62 :DKVLRNYMK 1i60A 118 :KKSSVDVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17466 # 1ikpA.62.308 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 62 :DKVLRNYMK 1ikpA 309 :DQVIRNALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17467 # 1h7cA.62.67 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 62 :DKVLRNYMK 1h7cA 68 :QRRLEAAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17468 # 2bnlA.62.84 read from T0287.t04.many.frag # found chain 2bnlA in template set T0287 62 :DKVLRNYMK 2bnlA 85 :ATALAEFWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17469 # 1zc6A.63.229 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 63 :KVLRNYMKD 1zc6A 230 :ALLRQAGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=17470 # 1bgf.63.103 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 63 :KVLRNYMKD 1bgf 103 :VVISNCLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17471 # 2f5xA.63.290 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 63 :KVLRNYMKD 2f5xA 279 :AKVKQQVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17472 # 1txjA.63.88 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 63 :KVLRNYMKD 1txjA 89 :VYIKNYMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17473 # 1qoyA.63.223 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 63 :KVLRNYMKD 1qoyA 209 :PELKNKLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17474 # 1fjgT.63.78 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 63 :KVLRNYMKD 1fjgT 79 :RRKSRLMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17475 # 1mw9X.63.561 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 63 :KVLRNYMKD 1mw9X 562 :AVLDHFFSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17476 # 1wa5C.63.397 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 63 :KVLRNYMKD 1wa5C 398 :NIFLAHMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17477 # 1tu9A.63.24 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 63 :KVLRNYMKD 1tu9A 23 :DFYRHFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17478 # 1hs6A.63.426 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 63 :KVLRNYMKD 1hs6A 426 :DFLYSYFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17479 # 1zk8A.63.113 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 63 :KVLRNYMKD 1zk8A 114 :KAGDGIVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17480 # 1y6xA.63.42 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 63 :KVLRNYMKD 1y6xA 43 :KKLLEEAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17481 # 1psrA.63.32 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 63 :KVLRNYMKD 1psrA 33 :TMMKENFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17482 # 1xp8A.63.183 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 63 :KVLRNYMKD 1xp8A 181 :RLMSQALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17483 # 1sz9A.63.68 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 63 :KVLRNYMK 1sz9A 69 :SICKNVGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=17484 # 1j5wA.63.222 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 63 :KVLRNYMKD 1j5wA 211 :RHFDEYEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17485 # 1ytaA.63.112 read from T0287.t04.many.frag # found chain 1ytaA in template set Warning: unaligning (T0287)Y68 (1ytaA)Y118 because G (3-10) conformation "forbidden" or filtered. T0287 63 :KVLRN 1ytaA 113 :RFLFK T0287 69 :MKD 1ytaA 119 :MPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17487 # 2au5A.63.86 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 63 :KVLRNYMKD 2au5A 84 :GELARLIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17488 # 1p4cA.63.323 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 63 :KVLRNYMKD 1p4cA 324 :EVLTLLKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17489 # 2mhr.63.48 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 63 :KVLRNYMKD 2mhr 49 :KVTTNHFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17490 # 1muwA.63.64 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 63 :KVLRNYMKD 1muwA 65 :TERESHIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17491 # 1eyqA.63.104 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 63 :KVLRNYMKD 1eyqA 105 :EYSRKVMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17492 # 1mxrA.63.123 read from T0287.t04.many.frag # found chain 1mxrA in training set T0287 63 :KVLRNYMKD 1mxrA 124 :HIIRNIVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=17493 # 1hw1A.63.186 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 63 :KVLRNYMKD 1hw1A 187 :SLALGFYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17494 # 1tzvA.63.62 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 63 :KVLRNYMKD 1tzvA 63 :DLISRYLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17495 # 1a6m.63.132 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 63 :KVLRNYMKD 1a6m 133 :KALELFRKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17496 # 1i60A.63.118 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 63 :KVLRNYMKD 1i60A 119 :KSSVDVLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17497 # 1h7cA.63.68 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 63 :KVLRNYMKD 1h7cA 69 :RRLEAAYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17498 # 1yacA.63.184 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 63 :KVLRNYMKD 1yacA 185 :TLFSNHIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17499 # 1z8uA.63.38 read from T0287.t04.many.frag # found chain 1z8uA in template set T0287 63 :KVLRNYMKD 1z8uA 39 :TVVEDWMNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17500 # 1bgf.64.104 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 64 :VLRNYMKDY 1bgf 104 :VISNCLREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17501 # 1wa5C.64.398 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 64 :VLRNYMKDY 1wa5C 399 :IFLAHMKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17502 # 1txjA.64.89 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 64 :VLRNYMKDY 1txjA 90 :YIKNYMQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17503 # 2f5xA.64.291 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 64 :VLRNYMKDY 2f5xA 280 :KVKQQVPQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17504 # 1zc6A.64.230 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 64 :VLRNYMKDY 1zc6A 231 :LLRQAGEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17505 # 1qoyA.64.224 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 64 :VLRNYMKDY 1qoyA 210 :ELKNKLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17506 # 1fjgT.64.79 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 64 :VLRNYMKDY 1fjgT 80 :RKSRLMRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17507 # 1mw9X.64.562 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 64 :VLRNYMKDY 1mw9X 563 :VLDHFFSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17508 # 1hs6A.64.427 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 64 :VLRNYMKDY 1hs6A 427 :FLYSYFKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17509 # 1xp8A.64.184 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 64 :VLRNYMKDY 1xp8A 182 :LMSQALRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17510 # 1ytaA.64.113 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 64 :VLRNYMKDY 1ytaA 114 :FLFKYMPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17511 # 1psrA.64.33 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 64 :VLRNYMKDY 1psrA 34 :MMKENFPNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17512 # 1i60A.64.119 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 64 :VLRNYMKDY 1i60A 120 :SSVDVLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17513 # 1tu9A.64.25 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 64 :VLRNYMKDY 1tu9A 24 :FYRHFLASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17514 # 1muwA.64.65 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 64 :VLRNYMKDY 1muwA 66 :ERESHIKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17515 # 1j5wA.64.223 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 64 :VLRNYMKDY 1j5wA 212 :HFDEYEKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17516 # 1y6xA.64.43 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 64 :VLRNYMKDY 1y6xA 44 :KLLEEAGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17517 # 1hw1A.64.187 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 64 :VLRNYMKDY 1hw1A 188 :LALGFYHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17518 # 2mhr.64.49 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 64 :VLRNYMKDY 2mhr 50 :VTTNHFTHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17519 # 1eyqA.64.105 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 64 :VLRNYMKDY 1eyqA 106 :YSRKVMENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17520 # 1zk8A.64.114 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 64 :VLRNYMKDY 1zk8A 115 :AGDGIVKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17521 # 1mxrA.64.124 read from T0287.t04.many.frag # found chain 1mxrA in training set T0287 64 :VLRNYMKDY 1mxrA 125 :IIRNIVNDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17522 # 1h7cA.64.69 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 64 :VLRNYMKDY 1h7cA 70 :RLEAAYLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17523 # 2au5A.64.87 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 64 :VLRNYMKDY 2au5A 85 :ELARLIRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17524 # 1b5l.64.118 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 64 :VLRNYMKDY 1b5l 119 :TVKKYFQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17525 # 1yacA.64.185 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 64 :VLRNYMKDY 1yacA 186 :LFSNHIPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17526 # 1l9lA.64.43 read from T0287.t04.many.frag # found chain 1l9lA in training set Warning: unaligning (T0287)D71 because of BadResidue code BAD_PEPTIDE in next template residue (1l9lA)Y52 Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE at template residue (1l9lA)Y52 T0287 64 :VLRNYMK 1l9lA 44 :VCRNFMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17527 # 1p4cA.64.324 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 64 :VLRNYMKDY 1p4cA 325 :VLTLLKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17528 # 1z8uA.64.39 read from T0287.t04.many.frag # found chain 1z8uA in template set T0287 64 :VLRNYMKDY 1z8uA 40 :VVEDWMNFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17529 # 1sz9A.64.69 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 64 :VLRNY 1sz9A 70 :ICKNV T0287 70 :K 1sz9A 76 :S T0287 72 :Y 1sz9A 78 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=17532 # 1wa5C.65.399 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 65 :LRNYMKDYR 1wa5C 400 :FLAHMKGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17533 # 1bgf.65.105 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 65 :LRNYMKDYR 1bgf 105 :ISNCLREER Number of specific fragments extracted= 1 number of extra gaps= 0 total=17534 # 1zc6A.65.231 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 65 :LRNYMKDYR 1zc6A 232 :LRQAGEDAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17535 # 2f5xA.65.292 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 65 :LRNYMKDYR 2f5xA 281 :VKQQVPQWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17536 # 1txjA.65.90 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 65 :LRNYMKDYR 1txjA 91 :IKNYMQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17537 # 1fjgT.65.80 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 65 :LRNYMKDYR 1fjgT 81 :KSRLMRKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17538 # 1xp8A.65.185 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 65 :LRNYMKDYR 1xp8A 183 :MSQALRKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17539 # 1muwA.65.66 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 65 :LRNYMKDYR 1muwA 67 :RESHIKRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17540 # 1mw9X.65.563 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 65 :LRNYMKDYR 1mw9X 564 :LDHFFSDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17541 # 1qoyA.65.225 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 65 :LRNYMKDYR 1qoyA 211 :LKNKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17542 # 1j5wA.65.224 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 65 :LRNYMKDYR 1j5wA 213 :FDEYEKEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17543 # 1hs6A.65.428 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 65 :LRNYMKDYR 1hs6A 428 :LYSYFKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17544 # 1eyqA.65.106 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 65 :LRNYMKDYR 1eyqA 107 :SRKVMENCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17545 # 2mhr.65.50 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 65 :LRNYMKDYR 2mhr 51 :TTNHFTHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17546 # 1ytaA.65.114 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 65 :LRNYMKDYR 1ytaA 115 :LFKYMPELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17547 # 1psrA.65.34 read from T0287.t04.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)M69 (1psrA)F39 because G (3-10) conformation "forbidden" or filtered. T0287 65 :LRNY 1psrA 35 :MKEN T0287 70 :KDYR 1psrA 40 :PNFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17549 # 1p4cA.65.325 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 65 :LRNYMKDYR 1p4cA 326 :LTLLKADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17550 # 1zk8A.65.115 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 65 :LRNYMKDYR 1zk8A 116 :GDGIVKLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17551 # 1b5l.65.119 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 65 :LRNYMKDYR 1b5l 120 :VKKYFQGIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17552 # 1tu9A.65.26 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 65 :LRNYMKDYR 1tu9A 25 :YRHFLASSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17553 # 1i60A.65.120 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 65 :LRNYMKDYR 1i60A 121 :SVDVLTELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17554 # 1h7cA.65.70 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 65 :LRNYMKDYR 1h7cA 71 :LEAAYLDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17555 # 1a6m.65.134 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 65 :LRNYMKDYR 1a6m 135 :LELFRKDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17556 # 1hw1A.65.188 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 65 :LRNYMKDYR 1hw1A 189 :ALGFYHKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17557 # 1uw4B.65.78 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 65 :LRNYMKDYR 1uw4B 846 :VDGVLEDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17558 # 1y6xA.65.44 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 65 :LRNYMKDYR 1y6xA 45 :LLEEAGEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17559 # 1dlwA.65.77 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 65 :LRNYMKDYR 1dlwA 78 :FTTVIGHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17560 # 1fjgI.65.84 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 65 :LRNYMKDYR 1fjgI 85 :LVQYNPDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17561 # 1ail.65.35 read from T0287.t04.many.frag # found chain 1ail in template set T0287 65 :LRNYMKDYR 1ail 36 :LRRDQKSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17562 # 2au5A.65.88 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 65 :LRNYMKDYR 2au5A 86 :LARLIRLYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17563 # 1wa5C.66.400 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 66 :RNYMKDYRA 1wa5C 401 :LAHMKGFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17564 # 2f5xA.66.293 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 66 :RNYMKDYRA 2f5xA 282 :KQQVPQWAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17565 # 1bgf.66.106 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 66 :RNYMKDYRA 1bgf 106 :SNCLREERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17566 # 1qoyA.66.226 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 66 :RNYMKDYRA 1qoyA 212 :KNKLKSVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17567 # 1txjA.66.91 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 66 :RNYMKDYRA 1txjA 92 :KNYMQKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17568 # 1fjgT.66.81 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 66 :RNYMKDYRA 1fjgT 82 :SRLMRKVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17569 # 1muwA.66.67 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 66 :RNYMKDYRA 1muwA 68 :ESHIKRFRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17570 # 1zc6A.66.232 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 66 :RNYMKDYRA 1zc6A 233 :RQAGEDAWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17571 # 1xp8A.66.186 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 66 :RNYMKDYRA 1xp8A 184 :SQALRKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17572 # 1psrA.66.35 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 66 :RNYMKDYRA 1psrA 36 :KENFPNFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17573 # 2mhr.66.51 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 66 :RNYMKDYRA 2mhr 52 :TNHFTHEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17574 # 1i60A.66.121 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 66 :RNYMKDYRA 1i60A 122 :VDVLTELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17575 # 1eyqA.66.107 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 66 :RNYMKDYRA 1eyqA 108 :RKVMENCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17576 # 1hs6A.66.429 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 66 :RNYMKDYRA 1hs6A 429 :YSYFKDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17577 # 1h7cA.66.71 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 66 :RNYMKDYRA 1h7cA 72 :EAAYLDLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17578 # 1a6m.66.135 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 66 :RNYMKDYRA 1a6m 136 :ELFRKDIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17579 # 1mw9X.66.564 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 66 :RNYMKDYRA 1mw9X 565 :DHFFSDFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17580 # 1hw1A.66.189 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 66 :RNYMKDYRA 1hw1A 190 :LGFYHKLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17581 # 1b5l.66.120 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 66 :RNYMKDYRA 1b5l 121 :KKYFQGIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17582 # 1ytaA.66.115 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 66 :RNYMKDYRA 1ytaA 116 :FKYMPELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17583 # 1iuqA.66.37 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 66 :RNYMKDYRA 1iuqA 39 :EELYQNYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17584 # 1j5wA.66.225 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 66 :RNYMKDYRA 1j5wA 214 :DEYEKEFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17585 # 1fkmA.66.61 read from T0287.t04.many.frag # found chain 1fkmA in template set T0287 66 :RNYMKDYRA 1fkmA 309 :QRKRKEYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17586 # 1fjgI.66.85 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 66 :RNYMKDYRA 1fjgI 86 :VQYNPDYRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17587 # 1ail.66.36 read from T0287.t04.many.frag # found chain 1ail in template set T0287 66 :RNYMKDYRA 1ail 37 :RRDQKSLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17588 # 1dlwA.66.78 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 66 :RNYMKDYRA 1dlwA 79 :TTVIGHLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17589 # 1p4cA.66.326 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 66 :RNYMKDYRA 1p4cA 327 :TLLKADIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17590 # 1zk8A.66.116 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 66 :RNYMKDYRA 1zk8A 117 :DGIVKLCLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17591 # 1yacA.66.187 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 66 :RNYMKDYRA 1yacA 188 :SNHIPDYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17592 # 1yviA.66.75 read from T0287.t04.many.frag # found chain 1yviA in template set T0287 66 :RNYMKDYRA 1yviA 76 :DAYVHQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17593 # 2f5xA.67.294 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 67 :NYMKDYRAV 2f5xA 283 :QQVPQWAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17594 # 1wa5C.67.401 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 67 :NYMKDYRAV 1wa5C 402 :AHMKGFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17595 # 1fjgT.67.82 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 67 :NYMKDYRAV 1fjgT 83 :RLMRKVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17596 # 1muwA.67.68 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 67 :NYMKDYRAV 1muwA 69 :SHIKRFRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17597 # 1bgf.67.107 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 67 :NYMKDYRAV 1bgf 107 :NCLREERRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17598 # 1xp8A.67.187 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 67 :NYMKDYRAV 1xp8A 185 :QALRKLTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17599 # 1fjgI.67.86 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 67 :NYMKDYRAV 1fjgI 87 :QYNPDYRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17600 # 2mhr.67.52 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 67 :NYMKDYRAV 2mhr 53 :NHFTHEEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17601 # 1iuqA.67.38 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 67 :NYMKDYRAV 1iuqA 40 :ELYQNYRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17602 # 1zc6A.67.233 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 67 :NYMKDYRAV 1zc6A 234 :QAGEDAWAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17603 # 1eyqA.67.108 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 67 :NYMKDYRAV 1eyqA 109 :KVMENCVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17604 # 1qoyA.67.227 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 67 :NYMKDYRAV 1qoyA 213 :NKLKSVQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17605 # 1txjA.67.92 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 67 :NYMKDYRAV 1txjA 93 :NYMQKILKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17606 # 1hw1A.67.190 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 67 :NYMKDYRAV 1hw1A 191 :GFYHKLSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17607 # 1dlwA.67.79 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 67 :NYMKDYRAV 1dlwA 80 :TVIGHLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17608 # 1psrA.67.36 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 67 :NYMKDYRAV 1psrA 37 :ENFPNFLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17609 # 1a6m.67.136 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 67 :NYMKDYRAV 1a6m 137 :LFRKDIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17610 # 1h7cA.67.72 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 67 :NYMKDYRAV 1h7cA 73 :AAYLDLQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17611 # 1hs6A.67.430 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 67 :NYMKDYRAV 1hs6A 430 :SYFKDKVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17612 # 1i60A.67.122 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 67 :NYMKDYRAV 1i60A 123 :DVLTELSDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17613 # 1zk8A.67.117 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 67 :NYMKDYRAV 1zk8A 118 :GIVKLCLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17614 # 1b5l.67.121 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 67 :NYMKDYRAV 1b5l 122 :KYFQGIYDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17615 # 1p4cA.67.327 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 67 :NYMKDYRAV 1p4cA 328 :LLKADIDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17616 # 1fkmA.67.62 read from T0287.t04.many.frag # found chain 1fkmA in template set T0287 67 :NYMKDYRAV 1fkmA 310 :RKRKEYRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17617 # 1mw9X.67.565 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 67 :NYMKDYRAV 1mw9X 566 :HFFSDFTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17618 # 1j5wA.67.226 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 67 :NYMKDYRAV 1j5wA 215 :EYEKEFYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17619 # 1uw4B.67.80 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 67 :NYMKDYRAV 1uw4B 848 :GVLEDIRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17620 # 1m48A.67.60 read from T0287.t04.many.frag # found chain 1m48A in template set T0287 67 :NYMKDYRAV 1m48A 61 :EELKPLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17621 # 1ail.67.37 read from T0287.t04.many.frag # found chain 1ail in template set T0287 67 :NYMKDYRAV 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17622 # 1yacA.67.188 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 67 :NYMKDYRAV 1yacA 189 :NHIPDYRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17623 # 2f5xA.68.295 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 68 :YMKDYRAVI 2f5xA 284 :QVPQWAELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17624 # 1fjgI.68.87 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 68 :YMKDYRAVI 1fjgI 88 :YNPDYRAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17625 # 1wa5C.68.402 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 68 :YMKDYRAVI 1wa5C 403 :HMKGFVDQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17626 # 1fjgT.68.83 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 68 :YMKDYRAVI 1fjgT 84 :LMRKVRQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17627 # 1muwA.68.69 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 68 :YMKDYRAVI 1muwA 70 :HIKRFRQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17628 # 1bgf.68.108 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 68 :YMKDYRAVI 1bgf 108 :CLREERRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17629 # 1psrA.68.37 read from T0287.t04.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)Y68 (1psrA)N38 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M69 (1psrA)F39 because G (3-10) conformation "forbidden" or filtered. T0287 70 :KDYRAVI 1psrA 40 :PNFLSAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=17630 # 2mhr.68.53 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 68 :YMKDYRAVI 2mhr 54 :HFTHEEAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17631 # 1dlwA.68.80 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 68 :YMKDYRAVI 1dlwA 81 :VIGHLRSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17632 # 1iuqA.68.39 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 68 :YMKDYRAVI 1iuqA 41 :LYQNYRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17633 # 1xp8A.68.188 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 68 :YMKDYRAVI 1xp8A 186 :ALRKLTAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17634 # 1eyqA.68.109 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 68 :YMKDYRAVI 1eyqA 110 :VMENCVAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17635 # 1hw1A.68.191 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 68 :YMKDYRAVI 1hw1A 192 :FYHKLSALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17636 # 1zc6A.68.234 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 68 :YMKDYRAVI 1zc6A 235 :AGEDAWAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17637 # 1txjA.68.93 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 68 :YMKDYRAVI 1txjA 94 :YMQKILKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17638 # 1yacA.68.189 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 68 :YMKDYRAVI 1yacA 190 :HIPDYRNLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17639 # 1hs6A.68.431 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 68 :YMKDYRAVI 1hs6A 431 :YFKDKVDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17640 # 1h7cA.68.73 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 68 :YMKDYRAVI 1h7cA 74 :AYLDLQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17641 # 1qoyA.68.228 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 68 :YMKDYRAVI 1qoyA 214 :KLKSVQNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17642 # 1yqyA.68.53 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 68 :YMKDYRAVI 1yqyA 311 :LSQEEKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17643 # 1a6m.68.137 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 68 :YMKDYRAVI 1a6m 138 :FRKDIAAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17644 # 1ail.68.38 read from T0287.t04.many.frag # found chain 1ail in template set T0287 68 :YMKDYRAVI 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17645 # 1i60A.68.123 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 68 :YMKDYRAVI 1i60A 124 :VLTELSDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17646 # 1p4cA.68.328 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 68 :YMKDYRAVI 1p4cA 329 :LKADIDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17647 # 1a8o.68.43 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 68 :YMKDYRAVI 1a8o 194 :ANPDCKTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17648 # 1zk8A.68.118 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 68 :YMKDYRAVI 1zk8A 119 :IVKLCLQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17649 # 1b5l.68.122 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 68 :YMKDYRAVI 1b5l 123 :YFQGIYDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17650 # 1cxqA.68.115 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 68 :YMKDYRAVI 1cxqA 163 :LKDKIRVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17651 # 2f6hX.68.76 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 68 :YMKDYRAVI 2f6hX 98 :VLTTIQKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17652 # 1uw4B.68.81 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 68 :YMKDYRAVI 1uw4B 849 :VLEDIRLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17653 # 2f5xA.69.296 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 69 :MKDYRAVIK 2f5xA 285 :VPQWAELFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17654 # 1fjgI.69.88 read from T0287.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 69 :MKDYRA 1fjgI 89 :NPDYRA T0287 76 :IK 1fjgI 96 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17656 # 2mhr.69.54 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 69 :MKDYRAVIK 2mhr 55 :FTHEEAMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17657 # 1fjgT.69.84 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 69 :MKDYRAVIK 1fjgT 85 :MRKVRQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17658 # 1iuqA.69.40 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 69 :MKDYRAVIK 1iuqA 42 :YQNYRNAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17659 # 1hw1A.69.192 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 69 :MKDYRAVIK 1hw1A 193 :YHKLSALCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17660 # 1dlwA.69.81 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 69 :MKDYRAVIK 1dlwA 82 :IGHLRSALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17661 # 1xp8A.69.189 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 69 :MKDYRAVIK 1xp8A 187 :LRKLTAILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17662 # 1muwA.69.70 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 69 :MKDYRAVIK 1muwA 71 :IKRFRQALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17663 # 1eyqA.69.110 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 69 :MKDYRAVIK 1eyqA 111 :MENCVAHLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17664 # 1psrA.69.38 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 69 :MKDYRAVIK 1psrA 39 :FPNFLSACD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17665 # 1bgf.69.109 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 69 :MKDYRAVIK 1bgf 109 :LREERRILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17666 # 1yqyA.69.54 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 69 :MKDYRAVIK 1yqyA 312 :SQEEKELLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17667 # 1wa5C.69.403 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 69 :MKDYRAVIK 1wa5C 404 :MKGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17668 # 1bxyA.69.15 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 69 :MKDYRAVIK 1bxyA 16 :PKDQKAALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17669 # 1eexA.69.415 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 69 :MKDYRAVIK 1eexA 416 :ARALQAVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17670 # 1i60A.69.124 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 69 :MKDYRAVIK 1i60A 125 :LTELSDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17671 # 2f6hX.69.77 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 69 :MKDYRAVIK 2f6hX 99 :LTTIQKVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17672 # 1cxqA.69.116 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 69 :MKDYRAVIK 1cxqA 164 :KDKIRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17673 # 1zk8A.69.119 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 69 :MKDYRAVIK 1zk8A 120 :VKLCLQVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17674 # 1ajsA.69.333 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 69 :MKDYRAVIK 1ajsA 334 :RSELRARLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17675 # 1t0fA.69.197 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 69 :MKDYRAVIK 1t0fA 195 :LSPLAHILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17676 # 1a8o.69.44 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 69 :MKDYRAVIK 1a8o 195 :NPDCKTILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17677 # 1zc6A.69.235 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 69 :MKDYRAVIK 1zc6A 236 :GEDAWAIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17678 # 1yacA.69.190 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 69 :MKDYRAVIK 1yacA 191 :IPDYRNLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17679 # 1txjA.69.94 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 69 :MKDYRAVIK 1txjA 95 :MQKILKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17680 # 1b5l.69.123 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 69 :MKDYRAVIK 1b5l 124 :FQGIYDYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17681 # 1p4cA.69.329 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 69 :MKDYRAVIK 1p4cA 330 :KADIDRTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17682 # 8abp.69.117 read from T0287.t04.many.frag # found chain 8abp in training set T0287 69 :MKDYRAVIK 8abp 118 :GQELYKEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17683 # 2f22A.69.119 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 69 :MKDYRAVIK 2f22A 119 :QGQYYVALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17684 # 2f5xA.70.297 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 70 :KDYRAVIKS 2f5xA 286 :PQWAELFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17685 # 2mhr.70.55 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 70 :KDYRAVIKS 2mhr 56 :THEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17686 # 1fjgT.70.85 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 70 :KDYRAVIKS 1fjgT 86 :RKVRQLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17687 # 1dlwA.70.82 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 70 :KDYRAVIKS 1dlwA 83 :GHLRSALTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17688 # 1eyqA.70.111 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 70 :KDYRAVIKS 1eyqA 112 :ENCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17689 # 1hw1A.70.193 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 70 :KDYRAVIKS 1hw1A 194 :HKLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17690 # 1eexA.70.416 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 70 :KDYRAVIKS 1eexA 417 :RALQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17691 # 1iuqA.70.41 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 70 :KDYRAVIKS 1iuqA 43 :QNYRNAVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17692 # 1xp8A.70.190 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 70 :KDYRAVIKS 1xp8A 188 :RKLTAILSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17693 # 1yqyA.70.55 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 70 :KDYRAVIKS 1yqyA 313 :QEEKELLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17694 # 1fjgI.70.89 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 70 :KDYRAVIKS 1fjgI 90 :PDYRAKLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17695 # 2f6hX.70.78 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 70 :KDYRAVIKS 2f6hX 100 :TTIQKVVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17696 # 1bgf.70.110 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 70 :KDYRAVIKS 1bgf 110 :REERRILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17697 # 1psrA.70.39 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 70 :KDYRAVIKS 1psrA 40 :PNFLSACDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17698 # 1bxyA.70.16 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 70 :KDYRAVIKS 1bxyA 17 :KDQKAALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17699 # 1muwA.70.71 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 70 :KDYRAVIKS 1muwA 72 :KRFRQALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17700 # 1cxqA.70.117 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 70 :KDYRAVIKS 1cxqA 165 :DKIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17701 # 1a8o.70.45 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 70 :KDYRAVIKS 1a8o 196 :PDCKTILKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17702 # 1y0zA.70.74 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 70 :KDYRAVIKS 1y0zA 75 :DDFNDVVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17703 # 1t0fA.70.198 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 70 :KDYRAVIKS 1t0fA 196 :SPLAHILQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17704 # 1p4cA.70.330 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 70 :KDYRAVIKS 1p4cA 331 :ADIDRTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17705 # 2f22A.70.120 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 70 :KDYRAVIKS 2f22A 120 :GQYYVALKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17706 # 1zk8A.70.120 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 70 :KDYRAVIKS 1zk8A 121 :KLCLQVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17707 # 1i60A.70.125 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 70 :KDYRAVIKS 1i60A 126 :TELSDIAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17708 # 1wa5C.70.404 read from T0287.t04.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wa5C)N418 T0287 70 :KDYRAVIK 1wa5C 405 :KGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17709 # 1b5l.70.124 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 70 :KDYRAVIKS 1b5l 125 :QGIYDYLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17710 # 1pa7A.70.75 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 70 :KDYRAVIKS 1pa7A 76 :KILQAGFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17711 # 1mn8A.70.17 read from T0287.t04.many.frag # found chain 1mn8A in training set T0287 70 :KDYRAVIKS 1mn8A 17 :KDVERIAHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17712 # 8abp.70.118 read from T0287.t04.many.frag # found chain 8abp in training set T0287 70 :KDYRAVIKS 8abp 119 :QELYKEMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17713 # 1y2qA.70.61 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 70 :KDYRAVIKS 1y2qA 62 :EEISKVAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17714 # 2f5xA.71.298 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 71 :DYRAVIKSI 2f5xA 287 :QWAELFKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17715 # 1fjgT.71.86 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 71 :DYRAVIKSI 1fjgT 87 :KVRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17716 # 2mhr.71.56 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 T0287 71 :DYRAVIKS 2mhr 57 :HEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17717 # 1yqyA.71.56 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 71 :DYRAVIKSI 1yqyA 314 :EEKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17718 # 1eyqA.71.112 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 71 :DYRAVIKSI 1eyqA 113 :NCVAHLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17719 # 1hw1A.71.194 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1hw1A 195 :KLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17720 # 1iuqA.71.42 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 71 :DYRAVIKSI 1iuqA 44 :NYRNAVIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=17721 # 1xp8A.71.191 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 71 :DYRAVIKSI 1xp8A 189 :KLTAILSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17722 # 1dlwA.71.83 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 71 :DYRAVIKSI 1dlwA 84 :HLRSALTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17723 # 1bxyA.71.17 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 71 :DYRAVIKSI 1bxyA 18 :DQKAALKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17724 # 2f6hX.71.79 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 71 :DYRAVIKSI 2f6hX 101 :TIQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17725 # 1eexA.71.417 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 71 :DYRAVIKSI 1eexA 418 :ALQAVFAGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17726 # 1a8o.71.46 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 71 :DYRAVIKSI 1a8o 197 :DCKTILKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17727 # 1psrA.71.40 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 71 :DYRAVIKSI 1psrA 41 :NFLSACDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17728 # 1t0fA.71.199 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 71 :DYRAVIKSI 1t0fA 197 :PLAHILQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17729 # 1y0zA.71.75 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 71 :DYRAVIKSI 1y0zA 76 :DFNDVVEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17730 # 2f22A.71.121 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 2f22A 121 :QYYVALKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17731 # 1y2qA.71.62 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 71 :DYRAVIKSI 1y2qA 63 :EISKVAEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17732 # 1p4cA.71.331 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 71 :DYRAVIKSI 1p4cA 332 :DIDRTLAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17733 # 1i60A.71.126 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 71 :DYRAVIKSI 1i60A 127 :ELSDIAEPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17734 # 1fjgI.71.90 read from T0287.t04.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRA 1fjgI 91 :DYRA T0287 76 :IKSI 1fjgI 96 :LKPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17736 # 1ajsA.71.335 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 71 :DYRAVIKSI 1ajsA 336 :ELRARLEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17737 # 1bgf.71.111 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 71 :DYRAVIKSI 1bgf 111 :EERRILAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17738 # 1pa7A.71.76 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 71 :DYRAVIKSI 1pa7A 77 :ILQAGFKRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17739 # 1muwA.71.72 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 71 :DYRAVIKSI 1muwA 73 :RFRQALDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17740 # 1cxqA.71.118 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 71 :DYRAVIKSI 1cxqA 166 :KIRVLAEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17741 # 1rcwA.71.183 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 71 :DYRAVIKSI 1rcwA 184 :EEKALIEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=17742 # 1mn8A.71.18 read from T0287.t04.many.frag # found chain 1mn8A in training set T0287 71 :DYRAVIKSI 1mn8A 18 :DVERIAHNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17743 # 8abp.71.119 read from T0287.t04.many.frag # found chain 8abp in training set T0287 71 :DYRAVIKSI 8abp 120 :ELYKEMQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17744 # 2ajtA.71.212 read from T0287.t04.many.frag # found chain 2ajtA in template set T0287 71 :DYRAVIKSI 2ajtA 213 :DLVQVVNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17745 # 2f5xA.72.299 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 72 :YRAVIKSIG 2f5xA 288 :WAELFKKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17746 # 1fjgT.72.87 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 72 :YRAVIKSIG 1fjgT 88 :VRQLLEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17747 # 1yqyA.72.57 read from T0287.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 1yqyA 315 :EKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17748 # 2mhr.72.57 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 72 :YRAVIKS 2mhr 58 :EEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17749 # 1eyqA.72.113 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 72 :YRAVIKSIG 1eyqA 114 :CVAHLKSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17750 # 1bxyA.72.18 read from T0287.t04.many.frag # found chain 1bxyA in template set Warning: unaligning (T0287)I79 (1bxyA)L26 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1bxyA 19 :QKAALKA T0287 80 :G 1bxyA 27 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=17752 # 1eexA.72.418 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 72 :YRAVIKSIG 1eexA 419 :LQAVFAGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17753 # 1y0zA.72.76 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 72 :YRAVIKSIG 1y0zA 77 :FNDVVEAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17754 # 1y2qA.72.63 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 72 :YRAVIKSIG 1y2qA 64 :ISKVAEQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17755 # 1xp8A.72.192 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 72 :YRAVIKSIG 1xp8A 190 :LTAILSKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17756 # 1hw1A.72.195 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1hw1A 196 :LSALCSE T0287 80 :G 1hw1A 204 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=17758 # 1iuqA.72.43 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 72 :YRAVIKSIG 1iuqA 45 :YRNAVIESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17759 # 1dlwA.72.84 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 72 :YRAVIKSIG 1dlwA 85 :LRSALTGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17760 # 1t0fA.72.200 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 72 :YRAVIKSIG 1t0fA 198 :LAHILQEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17761 # 2f22A.72.122 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 72 :YRAVIKSIG 2f22A 122 :YYVALKQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17762 # 2f6hX.72.80 read from T0287.t04.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 2f6hX 102 :IQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17763 # 1a8o.72.47 read from T0287.t04.many.frag # found chain 1a8o in training set Warning: unaligning (T0287)G80 (1a8o)G206 because S (epsilon) conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 1a8o 198 :CKTILKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17764 # 1psrA.72.41 read from T0287.t04.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1psrA 42 :FLSACDK T0287 80 :G 1psrA 50 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=17766 # 1cxqA.72.119 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 72 :YRAVIKSIG 1cxqA 167 :IRVLAEGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17767 # 1pa7A.72.77 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 72 :YRAVIKSIG 1pa7A 78 :LQAGFKRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17768 # 1k3yA.72.134 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)I79 (1k3yA)H143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 T0287 72 :YRAVIKS 1k3yA 136 :FEKVLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=17769 # 1p4cA.72.332 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 72 :YRAVIKSIG 1p4cA 333 :IDRTLAQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17770 # 1ve4A.72.18 read from T0287.t04.many.frag # found chain 1ve4A in template set T0287 72 :YRAVIKSIG 1ve4A 19 :AYEVLKRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17771 # 2bu3A.72.138 read from T0287.t04.many.frag # found chain 2bu3A in template set T0287 72 :YRAVIKSIG 2bu3A 128 :LGRLIASYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17772 # 1rcwA.72.184 read from T0287.t04.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)G80 (1rcwA)L193 because P (beta_P) conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 1rcwA 185 :EKALIEML Number of specific fragments extracted= 1 number of extra gaps= 1 total=17773 # 1s1dA.72.195 read from T0287.t04.many.frag # found chain 1s1dA in training set T0287 72 :YRAVIKSIG 1s1dA 196 :YNALRAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17774 # 2ajtA.72.213 read from T0287.t04.many.frag # found chain 2ajtA in template set T0287 72 :YRAVIKSIG 2ajtA 214 :LVQVVNSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17775 # 1ajsA.72.336 read from T0287.t04.many.frag # found chain 1ajsA in training set Warning: unaligning (T0287)I79 (1ajsA)L344 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1ajsA 337 :LRARLEA T0287 80 :G 1ajsA 345 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=17777 # 1i60A.72.127 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 72 :YRAVIKSIG 1i60A 128 :LSDIAEPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17778 # 1f5mA.72.52 read from T0287.t04.many.frag # found chain 1f5mA in template set T0287 72 :YRAVIKSIG 1f5mA 53 :IWHAYKSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17779 # 2f5xA.73.300 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 73 :RAVIKSIGV 2f5xA 289 :AELFKKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17780 # 1yqyA.73.58 read from T0287.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 73 :RAVIKSI 1yqyA 316 :KELLKRI T0287 81 :V 1yqyA 324 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=17782 # 2mhr.73.58 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 73 :RAVIKS 2mhr 59 :EAMMDA T0287 81 :V 2mhr 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=17784 # 1fjgT.73.88 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 73 :RAVIKSIGV 1fjgT 89 :RQLLEAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17785 # 1bxyA.73.19 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 73 :RAVIKSIGV 1bxyA 20 :KAALKALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17786 # 1iuqA.73.44 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 73 :RAVIKSIGV 1iuqA 46 :RNAVIESGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17787 # 1hw1A.73.196 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 73 :RAVIKSI 1hw1A 197 :SALCSEG T0287 81 :V 1hw1A 205 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=17789 # 1eexA.73.419 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 73 :RAVIKSIGV 1eexA 420 :QAVFAGMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17790 # 1psrA.73.42 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 73 :RAVIKSIGV 1psrA 43 :LSACDKKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17791 # 1t0fA.73.201 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 73 :RAVIKSIGV 1t0fA 199 :AHILQEKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17792 # 1y0zA.73.77 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 73 :RAVIKSIGV 1y0zA 78 :NDVVEAFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17793 # 1eyqA.73.114 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 73 :RAVIKSIGV 1eyqA 115 :VAHLKSVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17794 # 2f6hX.73.81 read from T0287.t04.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)V81 (2f6hX)G111 because S (epsilon) conformation "forbidden" or filtered. T0287 73 :RAVIKSIG 2f6hX 103 :QKVVTQLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17795 # 1y2qA.73.64 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 73 :RAVIKSIGV 1y2qA 65 :SKVAEQVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17796 # 1dlwA.73.85 read from T0287.t04.many.frag # found chain 1dlwA in training set Warning: unaligning (T0287)I79 (1dlwA)A92 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1dlwA 86 :RSALTG T0287 80 :GV 1dlwA 93 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17798 # 1xp8A.73.193 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 73 :RAVIKSIGV 1xp8A 191 :TAILSKTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17799 # 2f22A.73.123 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 73 :RAVIKSIGV 2f22A 123 :YVALKQSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17800 # 1pa7A.73.78 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 73 :RAVIKSIGV 1pa7A 79 :QAGFKRMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17801 # 1ve4A.73.19 read from T0287.t04.many.frag # found chain 1ve4A in template set Warning: unaligning (T0287)I79 (1ve4A)A26 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1ve4A 20 :YEVLKR T0287 80 :GV 1ve4A 27 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17803 # 1f5mA.73.53 read from T0287.t04.many.frag # found chain 1f5mA in template set T0287 73 :RAVIKSIGV 1f5mA 54 :WHAYKSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17804 # 1a8o.73.48 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 73 :RAVIKSIGV 1a8o 199 :KTILKALGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17805 # 1cxqA.73.120 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 73 :RAVIKSIGV 1cxqA 168 :RVLAEGDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17806 # 1k3yA.73.135 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 73 :RAVIKSI 1k3yA 137 :EKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=17807 # 1v4vA.73.83 read from T0287.t04.many.frag # found chain 1v4vA in training set T0287 73 :RAVIKSIGV 1v4vA 84 :ARALKEMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17808 # 2bu3A.73.139 read from T0287.t04.many.frag # found chain 2bu3A in template set Warning: unaligning (T0287)I79 (2bu3A)Y135 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 2bu3A 129 :GRLIAS T0287 80 :GV 2bu3A 136 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17810 # 1p4cA.73.333 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 73 :RAVIKSIGV 1p4cA 334 :DRTLAQIGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17811 # 1smbA.73.17 read from T0287.t04.many.frag # found chain 1smbA in training set T0287 73 :RAVIKSIGV 1smbA 18 :NEYRQKHGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17812 # 1s1dA.73.196 read from T0287.t04.many.frag # found chain 1s1dA in training set Warning: unaligning (T0287)I79 (1s1dA)A203 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1s1dA 197 :NALRAA T0287 80 :GV 1s1dA 204 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17814 # 2f8lA.73.70 read from T0287.t04.many.frag # found chain 2f8lA in template set T0287 73 :RAVIKSIGV 2f8lA 59 :QASYESIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17815 # 1yviA.73.82 read from T0287.t04.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 T0287 73 :RAVIKSIG 1yviA 83 :KGSSASVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=17816 # 1pa7A.74.79 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 74 :AVIKSIGVD 1pa7A 80 :AGFKRMGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17817 # 2f5xA.74.301 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 74 :AVIKSIGVD 2f5xA 290 :ELFKKAGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17818 # 1iuqA.74.45 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 74 :AVIKSIGVD 1iuqA 47 :NAVIESGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17819 # 2mhr.74.59 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 74 :AVIKS 2mhr 60 :AMMDA T0287 81 :VD 2mhr 67 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17821 # 1smbA.74.18 read from T0287.t04.many.frag # found chain 1smbA in training set T0287 74 :AVIKSIGVD 1smbA 19 :EYRQKHGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17822 # 1bxyA.74.20 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 74 :AVIKSIGVD 1bxyA 21 :AALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17823 # 1y0zA.74.78 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 74 :AVIKSIGVD 1y0zA 79 :DVVEAFGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17824 # 1eexA.74.420 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 74 :AVIKSIGVD 1eexA 421 :AVFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17825 # 1psrA.74.43 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 74 :AVIKSIGVD 1psrA 44 :SACDKKGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17826 # 1f5mA.74.54 read from T0287.t04.many.frag # found chain 1f5mA in template set T0287 74 :AVIKSIGVD 1f5mA 55 :HAYKSLAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17827 # 1yqyA.74.59 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 74 :AVIKSIGVD 1yqyA 317 :ELLKRIQID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17828 # 1fjgT.74.89 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 74 :AVIKSIGVD 1fjgT 90 :QLLEAAGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17829 # 2f22A.74.124 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 74 :AVIKSIGVD 2f22A 124 :VALKQSGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17830 # 1t0fA.74.202 read from T0287.t04.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)G80 (1t0fA)G206 because H (helix) conformation "forbidden" or filtered. T0287 74 :AVIKSI 1t0fA 200 :HILQEK T0287 81 :VD 1t0fA 207 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17832 # 1z3eB.74.21 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 74 :AVIKSIGVD 1z3eB 264 :NCLKRAGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17833 # 1w0hA.74.160 read from T0287.t04.many.frag # found chain 1w0hA in training set T0287 74 :AVIKSIGVD 1w0hA 279 :IMLEKLGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17834 # 1q0uA.74.16 read from T0287.t04.many.frag # found chain 1q0uA in template set T0287 74 :AVIKSIGVD 1q0uA 17 :EAIKTLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17835 # 1eyqA.74.115 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 74 :AVIKSIGVD 1eyqA 116 :AHLKSVGTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17836 # 1ve4A.74.20 read from T0287.t04.many.frag # found chain 1ve4A in template set Warning: unaligning (T0287)I79 (1ve4A)A26 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1ve4A 21 :EVLKR T0287 80 :GVD 1ve4A 27 :GLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17838 # 1s1dA.74.197 read from T0287.t04.many.frag # found chain 1s1dA in training set T0287 74 :AVIKSIGVD 1s1dA 198 :ALRAAAGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17839 # 1k3yA.74.136 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 74 :AVIKSI 1k3yA 138 :KVLKSH T0287 82 :D 1k3yA 146 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=17841 # 1y2qA.74.65 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 74 :AVIKSIGVD 1y2qA 66 :KVAEQVKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17842 # 1hw1A.74.197 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKS 1hw1A 198 :ALCSE T0287 81 :VD 1hw1A 205 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17844 # 1tqgA.74.49 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 74 :AVIKSIGVD 1tqgA 49 :GMAGTMGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17845 # 2f8lA.74.71 read from T0287.t04.many.frag # found chain 2f8lA in template set T0287 74 :AVIKSIGVD 2f8lA 60 :ASYESIELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17846 # 2fokA.74.329 read from T0287.t04.many.frag # found chain 2fokA in template set T0287 74 :AVIKSIGVD 2fokA 330 :DNLKKLGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17847 # 1p4cA.74.334 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 74 :AVIKSIGVD 1p4cA 335 :RTLAQIGCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17848 # 8abp.74.122 read from T0287.t04.many.frag # found chain 8abp in training set T0287 74 :AVIKSIGVD 8abp 123 :KEMQKRGWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17849 # 2f6hX.74.82 read from T0287.t04.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. T0287 74 :AVIKSI 2f6hX 104 :KVVTQL T0287 81 :VD 2f6hX 111 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17851 # 1a62.74.15 read from T0287.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1a62 16 :TLGENMGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17852 # 1pa7A.75.80 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 75 :VIKSIGVDK 1pa7A 81 :GFKRMGVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17853 # 1smbA.75.19 read from T0287.t04.many.frag # found chain 1smbA in training set T0287 75 :VIKSIGVDK 1smbA 20 :YRQKHGVPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17854 # 1iuqA.75.46 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 75 :VIKSIGVDK 1iuqA 48 :AVIESGNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17855 # 1psrA.75.44 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 75 :VIKSIGVDK 1psrA 45 :ACDKKGTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17856 # 1y0zA.75.79 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 75 :VIKSIGVDK 1y0zA 80 :VVEAFGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17857 # 1iirA.75.172 read from T0287.t04.many.frag # found chain 1iirA in training set T0287 75 :VIKSIGVDK 1iirA 173 :HRDAIGLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17858 # 2f5xA.75.302 read from T0287.t04.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)K83 (2f5xA)K299 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 2f5xA 291 :LFKKAGVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17859 # 1z3eB.75.22 read from T0287.t04.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1z3eB 265 :CLKR T0287 80 :GVDK 1z3eB 270 :GINT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17861 # 2f22A.75.125 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)D82 (2f22A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGV 2f22A 125 :ALKQSGI T0287 83 :K 2f22A 133 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17863 # 2fokA.75.330 read from T0287.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0287)K83 (2fokA)E339 because E (beta_S) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 2fokA 331 :NLKKLGFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17864 # 1tqgA.75.50 read from T0287.t04.many.frag # found chain 1tqgA in training set Warning: unaligning (T0287)I79 (1tqgA)M54 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1tqgA 50 :MAGT T0287 80 :GVDK 1tqgA 55 :GFSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17866 # 1uocA.75.231 read from T0287.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K83 (1uocA)R240 because N (gamma') conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1uocA 232 :LADELGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=17867 # 2mhr.75.60 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 75 :VIKS 2mhr 61 :MMDA T0287 81 :VDK 2mhr 67 :YSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17869 # 1c1kA.75.122 read from T0287.t04.many.frag # found chain 1c1kA in training set T0287 75 :VIKSIGVDK 1c1kA 123 :FSKKVEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17870 # 1kr7A.75.89 read from T0287.t04.many.frag # found chain 1kr7A in training set T0287 75 :VIKSIGVDK 1kr7A 89 :ACSAHGAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17871 # 1eexA.75.421 read from T0287.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1eexA)I431 T0287 75 :VIKSIGVD 1eexA 422 :VFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=17872 # 1bxyA.75.21 read from T0287.t04.many.frag # found chain 1bxyA in template set Warning: unaligning (T0287)I79 (1bxyA)L26 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1bxyA 22 :ALKA T0287 80 :GVDK 1bxyA 27 :GLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17874 # 1wu7A.75.247 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 75 :VIKSIGVDK 1wu7A 248 :LLASYGVKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17875 # 1q0uA.75.17 read from T0287.t04.many.frag # found chain 1q0uA in template set T0287 75 :VIKSIGVDK 1q0uA 18 :AIKTLRFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17876 # 2ar0A.75.75 read from T0287.t04.many.frag # found chain 2ar0A in template set T0287 75 :VIKSIGVDK 2ar0A 76 :MLVHLGEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17877 # 1bc5A.75.41 read from T0287.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1bc5A 57 :RLRA T0287 80 :GVDK 1bc5A 62 :GLDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17879 # 1w0hA.75.161 read from T0287.t04.many.frag # found chain 1w0hA in training set Warning: unaligning (T0287)I79 (1w0hA)L284 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1w0hA)Y288 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKS 1w0hA 280 :MLEK T0287 80 :GVD 1w0hA 285 :GMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=17881 # 1hw1A.75.198 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKS 1hw1A 199 :LCSE T0287 80 :GVDK 1hw1A 204 :AHDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17883 # 2f8lA.75.72 read from T0287.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0287)G80 (2f8lA)E66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (2f8lA)N69 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKSI 2f8lA 61 :SYESI T0287 81 :VD 2f8lA 67 :LE Number of specific fragments extracted= 2 number of extra gaps= 2 total=17885 # 1ejbA.75.40 read from T0287.t04.many.frag # found chain 1ejbA in template set T0287 75 :VIKSIGVDK 1ejbA 41 :RMASLGVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17886 # 1f5mA.75.55 read from T0287.t04.many.frag # found chain 1f5mA in template set Warning: unaligning (T0287)K83 (1f5mA)I64 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1f5mA 56 :AYKSLAVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17887 # 2cx1A.75.81 read from T0287.t04.many.frag # found chain 2cx1A in template set Warning: unaligning (T0287)G80 (2cx1A)G86 because S (epsilon) conformation "forbidden" or filtered. T0287 75 :VIKSI 2cx1A 81 :CLKAF T0287 81 :VDK 2cx1A 87 :VDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=17889 # 1wteA.75.42 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1wteA 43 :IFDYHSLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=17890 # 8abp.75.123 read from T0287.t04.many.frag # found chain 8abp in training set T0287 75 :VIKSIGVDK 8abp 124 :EMQKRGWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17891 # 1p4cA.75.335 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 75 :VIKSIGVDK 1p4cA 336 :TLAQIGCPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17892 # 1iuqA.76.47 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 76 :IKSIGVDKF 1iuqA 49 :VIESGNPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17893 # 1iirA.76.173 read from T0287.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)I79 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1iirA 174 :RDA T0287 80 :GVDKF 1iirA 178 :GLPPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17895 # 1smbA.76.20 read from T0287.t04.many.frag # found chain 1smbA in training set T0287 76 :IKSIGVDKF 1smbA 21 :RQKHGVPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17896 # 1kr7A.76.90 read from T0287.t04.many.frag # found chain 1kr7A in training set T0287 76 :IKSIGVDKF 1kr7A 90 :CSAHGAPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17897 # 1psrA.76.45 read from T0287.t04.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)D82 (1psrA)N52 because N (gamma') conformation "forbidden" or filtered. T0287 76 :IKSIGV 1psrA 46 :CDKKGT T0287 83 :KF 1psrA 53 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17899 # 1pa7A.76.81 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 76 :IKSIGVDKF 1pa7A 82 :FKRMGVDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17900 # 1bc5A.76.42 read from T0287.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1bc5A 58 :LRA T0287 80 :GVDKF 1bc5A 62 :GLDDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17902 # 1z3eB.76.23 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 76 :IKSIGVDKF 1z3eB 266 :LKRAGINTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17903 # 2ar0A.76.76 read from T0287.t04.many.frag # found chain 2ar0A in template set T0287 76 :IKSIGVDKF 2ar0A 77 :LVHLGEDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17904 # 2f22A.76.126 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (2f22A)L133 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKS 2f22A 126 :LKQ T0287 80 :GVD 2f22A 130 :GIN T0287 84 :F 2f22A 134 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=17907 # 1k8kG.76.82 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 76 :IKSIGVDKF 1k8kG 83 :LISFKANDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17908 # 1tqgA.76.51 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 76 :IKSIGVDKF 1tqgA 51 :AGTMGFSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17909 # 2fokA.76.331 read from T0287.t04.many.frag # found chain 2fokA in template set T0287 76 :IKSIGVDKF 2fokA 332 :LKKLGFDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17910 # 1c1kA.76.123 read from T0287.t04.many.frag # found chain 1c1kA in training set T0287 76 :IKSIGVDKF 1c1kA 124 :SKKVEVSAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17911 # 1uocA.76.232 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 76 :IKSIGVDKF 1uocA 233 :ADELGLPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17912 # 1y0zA.76.80 read from T0287.t04.many.frag # found chain 1y0zA in template set Warning: unaligning (T0287)K83 (1y0zA)E88 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1y0zA 81 :VEAFGFD T0287 84 :F 1y0zA 89 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17914 # 1wteA.76.43 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1wteA 44 :FDYHSLN T0287 84 :F 1wteA 52 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=17916 # 1ib2A.76.150 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 76 :IKSIGVDKF 1ib2A 978 :IECVQPQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17917 # 1ejbA.76.41 read from T0287.t04.many.frag # found chain 1ejbA in template set T0287 76 :IKSIGVDKF 1ejbA 42 :MASLGVEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17918 # 2f5xA.76.303 read from T0287.t04.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)F84 because last residue in template chain is (2f5xA)Q300 T0287 76 :IKSIGVDK 2f5xA 292 :FKKAGVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17919 # 1wu7A.76.248 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1wu7A 249 :LASYGVK T0287 84 :F 1wu7A 257 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=17921 # 1usgA.76.290 read from T0287.t04.many.frag # found chain 1usgA in training set T0287 76 :IKSIGVDKF 1usgA 291 :LERTGSDEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17922 # 2f8lA.76.73 read from T0287.t04.many.frag # found chain 2f8lA in template set T0287 76 :IKSIGVDKF 2f8lA 62 :YESIELENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17923 # 1hw1A.76.199 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 76 :IKS 1hw1A 200 :CSE T0287 80 :GVDKF 1hw1A 204 :AHDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17925 # 2c5uA.76.329 read from T0287.t04.many.frag # found chain 2c5uA in template set T0287 76 :IKSIGVDKF 2c5uA 329 :AKGAGMDHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17926 # 1rp4A.76.271 read from T0287.t04.many.frag # found chain 1rp4A in template set Warning: unaligning (T0287)G80 (1rp4A)D314 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSI 1rp4A 310 :ISQL T0287 81 :VDKF 1rp4A 315 :TKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17928 # 1oqjA.76.48 read from T0287.t04.many.frag # found chain 1oqjA in training set T0287 76 :IKSIGVDKF 1oqjA 134 :VHLAGKSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17929 # 2cx1A.76.82 read from T0287.t04.many.frag # found chain 2cx1A in template set T0287 76 :IKSIGVDKF 2cx1A 82 :LKAFGVDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17930 # 1ojrA.76.259 read from T0287.t04.many.frag # found chain 1ojrA in training set T0287 76 :IKSIGVDKF 1ojrA 260 :GKRFGVTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17931 # 1a62.76.17 read from T0287.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1a62 18 :GENMGL T0287 84 :F 1a62 26 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17933 # 1iuqA.77.48 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 77 :KSIGVDKFK 1iuqA 50 :IESGNPKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17934 # 1iirA.77.174 read from T0287.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)I79 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1iirA 175 :DA T0287 80 :GVDKFK 1iirA 178 :GLPPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17936 # 1k8kG.77.83 read from T0287.t04.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1k8kG 84 :ISF T0287 81 :VDKFK 1k8kG 88 :ANDIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17938 # 1bc5A.77.43 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 77 :KSIGVDKFK 1bc5A 59 :RALGLDDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17939 # 1kr7A.77.91 read from T0287.t04.many.frag # found chain 1kr7A in training set T0287 77 :KSIGVDKFK 1kr7A 91 :SAHGAPDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17940 # 1smbA.77.21 read from T0287.t04.many.frag # found chain 1smbA in training set T0287 77 :KSIGVDKFK 1smbA 22 :QKHGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17941 # 1hw1A.77.200 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 77 :KSIGVDKFK 1hw1A 201 :SEGAHDQVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17942 # 1tqgA.77.52 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 77 :KSIGVDKFK 1tqgA 52 :GTMGFSSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17943 # 1wteA.77.44 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KS 1wteA 45 :DY T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FK 1wteA 52 :FD Number of specific fragments extracted= 3 number of extra gaps= 2 total=17946 # 1z3eB.77.24 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 77 :KSIGVDKFK 1z3eB 267 :KRAGINTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17947 # 1pa7A.77.82 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 77 :KSIGVDKFK 1pa7A 83 :KRMGVDKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=17948 # 1ib2A.77.151 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1ib2A 979 :ECV T0287 81 :VDKFK 1ib2A 983 :PQSLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17950 # 1psrA.77.46 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 77 :KSIGVDKFK 1psrA 47 :DKKGTNYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17951 # 1c1kA.77.124 read from T0287.t04.many.frag # found chain 1c1kA in training set T0287 77 :KSIGVDKFK 1c1kA 125 :KKVEVSAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17952 # 2f22A.77.127 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 77 :KSIGVDKFK 2f22A 127 :KQSGINLPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17953 # 1uocA.77.233 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 77 :KSIGVDKFK 1uocA 234 :DELGLPRFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17954 # 2ar0A.77.77 read from T0287.t04.many.frag # found chain 2ar0A in template set Warning: unaligning (T0287)D82 (2ar0A)D83 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KSIGV 2ar0A 78 :VHLGE T0287 83 :KFK 2ar0A 84 :DKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17956 # 2c5uA.77.330 read from T0287.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)I79 (2c5uA)A332 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 2c5uA 330 :KG T0287 80 :GVDKFK 2c5uA 333 :GMDHLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17958 # 2f8lA.77.74 read from T0287.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0287)G80 (2f8lA)E66 because E (beta_S) conformation "forbidden" or filtered. T0287 77 :KSI 2f8lA 63 :ESI T0287 81 :VDKFK 2f8lA 67 :LENFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17960 # 1usgA.77.291 read from T0287.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0287)K83 (1usgA)E298 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGVD 1usgA 292 :ERTGSD T0287 84 :FK 1usgA 299 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17962 # 2fokA.77.332 read from T0287.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0287)I79 (2fokA)L335 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 2fokA 333 :KK T0287 80 :GVDKFK 2fokA 336 :GFDEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17964 # 1wu7A.77.249 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)I79 (1wu7A)Y252 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1wu7A)K255 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 77 :KS 1wu7A 250 :AS T0287 80 :GV 1wu7A 253 :GV T0287 84 :FK 1wu7A 257 :VR Number of specific fragments extracted= 3 number of extra gaps= 2 total=17967 # 1ezwA.77.275 read from T0287.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 77 :KSIGV 1ezwA 276 :EAIGK T0287 83 :KFK 1ezwA 282 :DFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17969 # 1oqjA.77.49 read from T0287.t04.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)K85 (1oqjA)K143 because L (left) conformation "forbidden" or filtered. T0287 77 :KSIGVDKF 1oqjA 135 :HLAGKSTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17970 # 1jy1A.77.183 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 77 :KSIGVDKFK 1jy1A 328 :TAYNAPSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17971 # 1h6gA.77.154 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 77 :KS 1h6gA 531 :QE T0287 80 :GVDKFK 1h6gA 534 :DVDGLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17973 # 1a62.77.18 read from T0287.t04.many.frag # found chain 1a62 in training set T0287 77 :KSIGVDKFK 1a62 19 :ENMGLENLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17974 # 1yviA.77.86 read from T0287.t04.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)I79 (1yviA)V89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1yviA)Q92 T0287 77 :KS 1yviA 87 :AS T0287 80 :G 1yviA 90 :G T0287 83 :KFK 1yviA 93 :KVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=17977 # 1q9uA.77.103 read from T0287.t04.many.frag # found chain 1q9uA in training set T0287 77 :KSIGVDKFK 1q9uA 101 :GMMNDPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17978 # 1sedA.77.62 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 77 :KSIGVDKFK 1sedA 61 :KAQGFVTFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17979 # 1k8kG.78.84 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 78 :SIGVDKFKK 1k8kG 85 :SFKANDIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17980 # 1bc5A.78.44 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 78 :SIGVDKFKK 1bc5A 60 :ALGLDDFGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17981 # 1iuqA.78.49 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 78 :SIGVDKFKK 1iuqA 51 :ESGNPKADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17982 # 1wteA.78.45 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 78 :SIGVD 1wteA 46 :YHSLN T0287 84 :FKK 1wteA 52 :FDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17984 # 1hw1A.78.201 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 78 :SIGVDKFKK 1hw1A 202 :EGAHDQVYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17985 # 1kr7A.78.92 read from T0287.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 1kr7A 92 :AHGA T0287 84 :FKK 1kr7A 98 :LGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=17987 # 1iirA.78.175 read from T0287.t04.many.frag # found chain 1iirA in training set T0287 78 :SIGVDKFKK 1iirA 176 :AIGLPPVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=17988 # 1ib2A.78.152 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)K83 (1ib2A)S985 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIGVD 1ib2A 980 :CVQPQ T0287 84 :FKK 1ib2A 986 :LQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17990 # 1tqgA.78.53 read from T0287.t04.many.frag # found chain 1tqgA in training set Warning: unaligning (T0287)I79 (1tqgA)M54 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 1tqgA 53 :T T0287 80 :GVDKFKK 1tqgA 55 :GFSSMAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17992 # 1z3eB.78.25 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 78 :SIGVDKFKK 1z3eB 268 :RAGINTVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17993 # 1h6gA.78.155 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 78 :S 1h6gA 532 :E T0287 80 :GVDKFKK 1h6gA 534 :DVDGLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17995 # 1c1kA.78.125 read from T0287.t04.many.frag # found chain 1c1kA in training set T0287 78 :SIGVDKFKK 1c1kA 126 :KVEVSAFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17996 # 1jy1A.78.184 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 78 :SIGVDKFKK 1jy1A 329 :AYNAPSLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17997 # 1smbA.78.22 read from T0287.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)K86 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0287 78 :SIGVDKFK 1smbA 23 :KHGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17998 # 1sedA.78.63 read from T0287.t04.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)I79 (1sedA)Q63 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 1sedA 62 :A T0287 80 :GVDKFKK 1sedA 64 :GFVTFDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18000 # 2aeuA.78.252 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 78 :SIGVDKFKK 2aeuA 253 :NFNLERIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18001 # 2c5uA.78.331 read from T0287.t04.many.frag # found chain 2c5uA in template set T0287 78 :SIGVDKFKK 2c5uA 331 :GAGMDHLFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18002 # 1ezwA.78.276 read from T0287.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIG 1ezwA 277 :AIG T0287 82 :DKFKK 1ezwA 281 :GDFGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18004 # 1u00A.78.186 read from T0287.t04.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)S78 (1u00A)G575 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :IGVDKFKK 1u00A 576 :DDVDAIEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=18005 # 1usgA.78.292 read from T0287.t04.many.frag # found chain 1usgA in training set T0287 78 :SIGVDKFKK 1usgA 293 :RTGSDEPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18006 # 1psrA.78.47 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 78 :SIGVDKFKK 1psrA 48 :KKGTNYLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18007 # 1sqsA.78.217 read from T0287.t04.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 78 :SIGVD 1sqsA 218 :LFEAN T0287 84 :FKK 1sqsA 224 :LEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18009 # 1zhxA.78.329 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 78 :SIGVDKFKK 1zhxA 326 :LGDFNLIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18010 # 1owlA.78.266 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 78 :SIGVDKFKK 1owlA 267 :LSRSDEARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18011 # 2f22A.78.128 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 78 :SIGVDKFKK 2f22A 128 :QSGINLPKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18012 # 1lo7A.78.40 read from T0287.t04.many.frag # found chain 1lo7A in training set Warning: unaligning (T0287)D82 (1lo7A)P45 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 1lo7A 41 :KCGL T0287 83 :KFKK 1lo7A 46 :PWRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18014 # 2fbqA.78.121 read from T0287.t04.many.frag # found chain 2fbqA in template set Warning: unaligning (T0287)I79 (2fbqA)Q121 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 2fbqA 120 :S T0287 80 :GVDKFKK 2fbqA 122 :SQGHLRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18016 # 1uvjA.78.179 read from T0287.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)V81 (1uvjA)Q183 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIG 1uvjA 180 :LML T0287 82 :DKFKK 1uvjA 184 :GKFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18018 # 1uocA.78.234 read from T0287.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)D82 (1uocA)P239 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 1uocA 235 :ELGL T0287 83 :KFKK 1uocA 240 :RFSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18020 # 1q9uA.78.104 read from T0287.t04.many.frag # found chain 1q9uA in training set T0287 78 :SIGVDKFKK 1q9uA 102 :MMNDPALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18021 # 1bc5A.79.45 read from T0287.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1bc5A 62 :GLDDFGRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=18022 # 1k8kG.79.85 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 79 :IGVDKFKKV 1k8kG 86 :FKANDIEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18023 # 1wteA.79.46 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 79 :IGVD 1wteA 47 :HSLN T0287 84 :FKKV 1wteA 52 :FDEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18025 # 1hw1A.79.202 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 1hw1A 203 :G T0287 81 :VDKFKKV 1hw1A 205 :HDQVYET Number of specific fragments extracted= 2 number of extra gaps= 1 total=18027 # 1h6gA.79.156 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1h6gA 534 :DVDGLDRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18028 # 1sedA.79.64 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 79 :IGVDKFKKV 1sedA 63 :QGFVTFDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18029 # 1ib2A.79.153 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 1ib2A 981 :V T0287 81 :VDKFKKV 1ib2A 983 :PQSLQFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18031 # 1kr7A.79.93 read from T0287.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :IGVD 1kr7A 93 :HGAP T0287 84 :FKKV 1kr7A 98 :LGHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18033 # 1iuqA.79.50 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 79 :IGVDKFKKV 1iuqA 52 :SGNPKADEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18034 # 1iirA.79.176 read from T0287.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)K86 (1iirA)D184 because D (zeta) conformation "forbidden" or filtered. T0287 79 :IGVDKFK 1iirA 177 :IGLPPVE T0287 87 :V 1iirA 185 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=18036 # 2aeuA.79.253 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 79 :IGVDKFKKV 2aeuA 254 :FNLERIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18037 # 1uvjA.79.180 read from T0287.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)V81 (1uvjA)Q183 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IG 1uvjA 181 :ML T0287 82 :DKFKKV 1uvjA 184 :GKFDDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18039 # 2fbqA.79.122 read from T0287.t04.many.frag # found chain 2fbqA in template set T0287 79 :IGVDKFKKV 2fbqA 121 :QSQGHLRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18040 # 1zhxA.79.330 read from T0287.t04.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)I79 (1zhxA)G327 because L (left) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1zhxA 328 :DFNLIAKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18041 # 1u00A.79.187 read from T0287.t04.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)G80 (1u00A)D577 because D (zeta) conformation "forbidden" or filtered. T0287 79 :I 1u00A 576 :D T0287 81 :VDKFKKV 1u00A 578 :VDAIEQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18043 # 1ezwA.79.277 read from T0287.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 79 :IGV 1ezwA 278 :IGK T0287 83 :KFKKV 1ezwA 282 :DFGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18045 # 2f6kA.79.131 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 79 :IGVDKFKKV 2f6kA 132 :FGSPVLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18046 # 1jy1A.79.185 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 79 :IGVDKFKKV 1jy1A 330 :YNAPSLKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18047 # 1z3eB.79.26 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 79 :IGVDKFKKV 1z3eB 269 :AGINTVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18048 # 1sqsA.79.218 read from T0287.t04.many.frag # found chain 1sqsA in training set T0287 79 :IGVDKFKKV 1sqsA 219 :FEANSLEEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18049 # 1owlA.79.267 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 79 :IGVDKFKKV 1owlA 268 :SRSDEARNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18050 # 1z3xA.79.107 read from T0287.t04.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 79 :IGV 1z3xA 105 :LVA T0287 83 :KFKKV 1z3xA 109 :KFEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18052 # 1tqgA.79.54 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 79 :IGVDKFKKV 1tqgA 54 :MGFSSMAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18053 # 1xm9A.79.430 read from T0287.t04.many.frag # found chain 1xm9A in template set Warning: unaligning (T0287)G80 (1xm9A)A675 because G (3-10) conformation "forbidden" or filtered. T0287 79 :I 1xm9A 674 :S T0287 81 :VDKFKKV 1xm9A 676 :SPKAAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18055 # 1c1kA.79.126 read from T0287.t04.many.frag # found chain 1c1kA in training set T0287 79 :IGVDKFKKV 1c1kA 127 :VEVSAFKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18056 # 1usgA.79.293 read from T0287.t04.many.frag # found chain 1usgA in training set T0287 79 :IGVDKFKKV 1usgA 294 :TGSDEPLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18057 # 1rwhA.79.27 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 79 :IGVDKFKKV 1rwhA 28 :AGDPDFAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18058 # 2anuA.79.76 read from T0287.t04.many.frag # found chain 2anuA in template set T0287 79 :IGVDKFKKV 2anuA 65 :ITEDKFQDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18059 # 2c5uA.79.332 read from T0287.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)I79 (2c5uA)A332 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 2c5uA 333 :GMDHLFGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18060 # 1psrA.79.48 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 79 :IGVDKFKKV 1psrA 49 :KGTNYLADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18061 # 1bc5A.80.46 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 80 :GVDKFKKVY 1bc5A 62 :GLDDFGRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18062 # 1k8kG.80.86 read from T0287.t04.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1k8kG 88 :ANDIEKAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18063 # 1sedA.80.65 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 80 :GVDKFKKVY 1sedA 64 :GFVTFDKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18064 # 1ib2A.80.154 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1ib2A 983 :PQSLQFII Number of specific fragments extracted= 1 number of extra gaps= 1 total=18065 # 1wteA.80.47 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FKKVY 1wteA 52 :FDELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18067 # 1h6gA.80.157 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1h6gA 535 :VDGLDRTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18068 # 1hw1A.80.203 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 80 :GVDKFKKVY 1hw1A 204 :AHDQVYETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18069 # 1uvjA.80.181 read from T0287.t04.many.frag # found chain 1uvjA in template set T0287 80 :GVDKFKKVY 1uvjA 182 :LQGKFDDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18070 # 2f6kA.80.132 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 80 :GVDKFKKVY 2f6kA 133 :GSPVLERVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18071 # 1ezwA.80.278 read from T0287.t04.many.frag # found chain 1ezwA in training set T0287 80 :GVDKFKKVY 1ezwA 279 :GKGDFGTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18072 # 1rwhA.80.28 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 80 :GVDKFKKVY 1rwhA 29 :GDPDFAKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18073 # 2aeuA.80.254 read from T0287.t04.many.frag # found chain 2aeuA in template set Warning: unaligning (T0287)G80 (2aeuA)N255 because E (beta_S) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 2aeuA 256 :LERIRKAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=18074 # 1zhxA.80.331 read from T0287.t04.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)G80 (1zhxA)D328 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1zhxA 329 :FNLIAKTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18075 # 1z3xA.80.108 read from T0287.t04.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 80 :GV 1z3xA 106 :VA T0287 83 :KFKKVY 1z3xA 109 :KFEAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18077 # 2anuA.80.77 read from T0287.t04.many.frag # found chain 2anuA in template set T0287 80 :GVDKFKKVY 2anuA 66 :TEDKFQDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18078 # 1owlA.80.268 read from T0287.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0287)G80 (1owlA)R269 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1owlA 270 :SDEARNSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18079 # 1u00A.80.188 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 80 :GVDKFKKVY 1u00A 577 :DVDAIEQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18080 # 2fbqA.80.123 read from T0287.t04.many.frag # found chain 2fbqA in template set T0287 80 :GVDKFKKVY 2fbqA 122 :SQGHLRKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18081 # 1sqsA.80.219 read from T0287.t04.many.frag # found chain 1sqsA in training set T0287 80 :GVDKFKKVY 1sqsA 220 :EANSLEEWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18082 # 1kr7A.80.94 read from T0287.t04.many.frag # found chain 1kr7A in training set T0287 80 :GVDKFKKVY 1kr7A 94 :GAPDLGHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18083 # 1iuqA.80.51 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 80 :GVDKFKKVY 1iuqA 53 :GNPKADEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18084 # 1e9rA.80.164 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 80 :GVDKFKKVY 1e9rA 235 :GTPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18085 # 1jy1A.80.186 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 80 :GVDKFKKVY 1jy1A 331 :NAPSLKEWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18086 # 1usgA.80.294 read from T0287.t04.many.frag # found chain 1usgA in training set T0287 80 :GVDKFKKVY 1usgA 295 :GSDEPLALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18087 # 1iirA.80.177 read from T0287.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)D82 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. T0287 80 :GV 1iirA 178 :GL T0287 83 :KFKKVY 1iirA 181 :PVEDIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18089 # 1j79A.80.145 read from T0287.t04.many.frag # found chain 1j79A in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1j79A)I147 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1j79A)I147 T0287 82 :DKFKKVY 1j79A 148 :DIFDREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18090 # 1rcwA.80.192 read from T0287.t04.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)K83 (1rcwA)D196 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVD 1rcwA 193 :LKD T0287 84 :FKKVY 1rcwA 197 :ADKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18092 # 2cc3A.80.25 read from T0287.t04.many.frag # found chain 2cc3A in template set T0287 80 :GVDKFKKVY 2cc3A 113 :DADTAQYAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18093 # 2bz1A.80.96 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 80 :GVDKFKKVY 2bz1A 97 :GLLNKIRAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18094 # 1gvdA.80.21 read from T0287.t04.many.frag # found chain 1gvdA in training set T0287 80 :GVDKFKKVY 1gvdA 111 :GPKRWSVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18095 # 1k8kG.81.87 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 81 :VDKFKKVYR 1k8kG 88 :ANDIEKAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18096 # 1bc5A.81.47 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 81 :VDKFKKVYR 1bc5A 63 :LDDFGRYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18097 # 1h6gA.81.158 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 81 :VDKFKKVYR 1h6gA 535 :VDGLDRTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18098 # 1sedA.81.66 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 81 :VDKFKKVYR 1sedA 65 :FVTFDKLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18099 # 1hw1A.81.204 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 81 :VDKFKKVYR 1hw1A 205 :HDQVYETVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18100 # 2f6kA.81.133 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 81 :VDKFKKVYR 2f6kA 134 :SPVLERVYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18101 # 1ib2A.81.155 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 81 :VDKFKKVYR 1ib2A 983 :PQSLQFIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18102 # 2aeuA.81.255 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 81 :VDKFKKVYR 2aeuA 256 :LERIRKAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18103 # 1uvjA.81.182 read from T0287.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 81 :V 1uvjA 183 :Q T0287 83 :KFKKVYR 1uvjA 185 :KFDDAYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18105 # 1rwhA.81.29 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 81 :VDKFKKVYR 1rwhA 30 :DPDFAKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18106 # 1wteA.81.48 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 81 :VD 1wteA 49 :LN T0287 84 :FKKVYR 1wteA 52 :FDELVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18108 # 1pb7A.81.187 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 81 :VDKFKKVYR 1pb7A 188 :QVELSTMYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18109 # 1ezwA.81.279 read from T0287.t04.many.frag # found chain 1ezwA in training set T0287 81 :VDKFKKVYR 1ezwA 280 :KGDFGTAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18110 # 1z3xA.81.109 read from T0287.t04.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)V81 (1z3xA)A107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 83 :KFKKVYR 1z3xA 109 :KFEAADR Number of specific fragments extracted= 1 number of extra gaps= 1 total=18111 # 1zhxA.81.332 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 81 :VDKFKKVYR 1zhxA 329 :FNLIAKTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18112 # 1u00A.81.189 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 81 :VDKFKKVYR 1u00A 578 :VDAIEQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18113 # 2anuA.81.78 read from T0287.t04.many.frag # found chain 2anuA in template set T0287 81 :VDKFKKVYR 2anuA 67 :EDKFQDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18114 # 2fbqA.81.124 read from T0287.t04.many.frag # found chain 2fbqA in template set T0287 81 :VDKFKKVYR 2fbqA 123 :QGHLRKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18115 # 1lugA.81.151 read from T0287.t04.many.frag # found chain 1lugA in training set T0287 81 :VDKFKKVYR 1lugA 153 :KPGLQKVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18116 # 1owlA.81.269 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 81 :VDKFKKVYR 1owlA 270 :SDEARNSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18117 # 1m2oA.81.541 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 81 :VDKFKKVYR 1m2oA 542 :TDDGADVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18118 # 1e9rA.81.165 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 81 :VDKFKKVYR 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18119 # 2b6cA.81.121 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 82 :DKFKKVYR 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18120 # 1aa7A.81.105 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 81 :VDKFKKVYR 1aa7A 106 :EITFHGAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18121 # 1jy1A.81.187 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 81 :VDKFKKVYR 1jy1A 332 :APSLKEWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18122 # 2bz1A.81.97 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 81 :VDKFKKVYR 2bz1A 98 :LLNKIRAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18123 # 1yw3A.81.115 read from T0287.t04.many.frag # found chain 1yw3A in template set T0287 81 :VDKFKKVYR 1yw3A 116 :AENFQPWSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18124 # 2ae5B.81.320 read from T0287.t04.many.frag # found chain 2ae5B in template set T0287 81 :VDKFKKVYR 2ae5B 321 :DPEVQAAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18125 # 1iirA.81.178 read from T0287.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)K86 (1iirA)D184 because D (zeta) conformation "forbidden" or filtered. T0287 81 :VDKFK 1iirA 179 :LPPVE T0287 87 :VYR 1iirA 185 :IFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18127 # 2cc3A.81.26 read from T0287.t04.many.frag # found chain 2cc3A in template set T0287 81 :VDKFKKVYR 2cc3A 114 :ADTAQYAYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18128 # 1k8kG.82.88 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 82 :DKFKKVYRL 1k8kG 89 :NDIEKAVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18129 # 1h6gA.82.159 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 82 :DKFKKVYRL 1h6gA 536 :DGLDRTAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18130 # 1hw1A.82.205 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 82 :DKFKKVYRL 1hw1A 206 :DQVYETVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18131 # 1sedA.82.67 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 82 :DKFKKVYRL 1sedA 66 :VTFDKLLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18132 # 2f6kA.82.134 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 82 :DKFKKVYRL 2f6kA 135 :PVLERVYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18133 # 1ib2A.82.156 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 82 :DKFKKVYRL 1ib2A 984 :QSLQFIIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18134 # 1m2oA.82.542 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 82 :DKFKKVYRL 1m2oA 543 :DDGADVIRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18135 # 1pb7A.82.188 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 82 :DKFKKVYRL 1pb7A 189 :VELSTMYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18136 # 1bc5A.82.48 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 82 :DKFKKVYRL 1bc5A 64 :DDFGRYLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18137 # 1rwhA.82.30 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 82 :DKFKKVYRL 1rwhA 31 :PDFAKAITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18138 # 2aeuA.82.256 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 82 :DKFKKVYRL 2aeuA 257 :ERIRKAFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=18139 # 1ezwA.82.280 read from T0287.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1ezwA 282 :DFGTAIGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18140 # 1uvjA.82.183 read from T0287.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1uvjA 185 :KFDDAYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18141 # 1zhxA.82.333 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 82 :DKFKKVYRL 1zhxA 330 :NLIAKTKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18142 # 1z3xA.82.110 read from T0287.t04.many.frag # found chain 1z3xA in template set T0287 82 :DKFKKVYRL 1z3xA 108 :EKFEAADRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18143 # 1e9rA.82.166 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 82 :DKFKKVYRL 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18144 # 2b6cA.82.122 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 82 :DKFKKVYRL 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18145 # 1u00A.82.190 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 82 :DKFKKVYRL 1u00A 579 :DAIEQAIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18146 # 1lugA.82.152 read from T0287.t04.many.frag # found chain 1lugA in training set T0287 82 :DKFKKVYRL 1lugA 154 :PGLQKVVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18147 # 2bz1A.82.98 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 82 :DKFKKVYRL 2bz1A 99 :LNKIRAYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18148 # 1sz9A.82.87 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 82 :DKFKKVYRL 1sz9A 88 :NLYKRTYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18149 # 1aa7A.82.106 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K83 (1aa7A)T108 because E (beta_S) conformation "forbidden" or filtered. T0287 82 :D 1aa7A 107 :I T0287 84 :FKKVYRL 1aa7A 109 :FHGAKEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18151 # 1wteA.82.49 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 82 :D 1wteA 50 :N T0287 84 :FKKVYRL 1wteA 52 :FDELVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18153 # 1owlA.82.270 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 82 :DKFKKVYRL 1owlA 271 :DEARNSIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18154 # 2ae5B.82.321 read from T0287.t04.many.frag # found chain 2ae5B in template set T0287 82 :DKFKKVYRL 2ae5B 322 :PEVQAAARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18155 # 1vykA.82.127 read from T0287.t04.many.frag # found chain 1vykA in template set T0287 82 :DKFKKVYRL 1vykA 128 :TEAEKYYGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18156 # 1j93A.82.167 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 82 :DKFKKVYRL 1j93A 167 :KNFTKIKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18157 # 1xkpA.82.118 read from T0287.t04.many.frag # found chain 1xkpA in training set T0287 82 :DKFKKVYRL 1xkpA 150 :PELAHLSHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18158 # 1qs1A.82.304 read from T0287.t04.many.frag # found chain 1qs1A in training set T0287 82 :DKFKKVYRL 1qs1A 305 :QDYKEINNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18159 # 1ae9A.82.6 read from T0287.t04.many.frag # found chain 1ae9A in template set T0287 82 :DKFKKVYRL 1ae9A 183 :DEYLKIYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18160 # 1k8kG.83.89 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 83 :KFKKVYRLL 1k8kG 90 :DIEKAVQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18161 # 1hw1A.83.206 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 83 :KFKKVYRLL 1hw1A 207 :QVYETVRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18162 # 1m2oA.83.543 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 83 :KFKKVYRLL 1m2oA 544 :DGADVIRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18163 # 1h6gA.83.160 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 83 :KFKKVYRLL 1h6gA 537 :GLDRTAGAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18164 # 2f6kA.83.135 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 83 :KFKKVYRLL 2f6kA 136 :VLERVYQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18165 # 1sedA.83.68 read from T0287.t04.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 83 :K 1sedA 67 :T T0287 85 :KKVYRLL 1sedA 69 :DKLLALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18167 # 1pb7A.83.189 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 83 :KFKKVYRLL 1pb7A 190 :ELSTMYRHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18168 # 1sz9A.83.88 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 83 :KFKKVYRLL 1sz9A 89 :LYKRTYLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18169 # 1rwhA.83.31 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 83 :KFKKVYRLL 1rwhA 32 :DFAKAITAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18170 # 1ib2A.83.157 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 83 :KFKKVYRLL 1ib2A 985 :SLQFIIDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18171 # 1bc5A.83.49 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 83 :KFKKVYRLL 1bc5A 65 :DFGRYLSML Number of specific fragments extracted= 1 number of extra gaps= 0 total=18172 # 2aeuA.83.257 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 83 :KFKKVYRLL 2aeuA 258 :RIRKAFERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18173 # 1e9rA.83.167 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 83 :KFKKVYRLL 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18174 # 1u00A.83.191 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 83 :KFKKVYRLL 1u00A 580 :AIEQAIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18175 # 1zhxA.83.334 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 83 :KFKKVYRLL 1zhxA 331 :LIAKTKTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18176 # 1vykA.83.128 read from T0287.t04.many.frag # found chain 1vykA in template set T0287 83 :KFKKVYRLL 1vykA 129 :EAEKYYGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18177 # 1owlA.83.271 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 83 :KFKKVYRLL 1owlA 272 :EARNSIRVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18178 # 1z3xA.83.111 read from T0287.t04.many.frag # found chain 1z3xA in template set T0287 83 :KFKKVYRLL 1z3xA 109 :KFEAADRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18179 # 1uvjA.83.184 read from T0287.t04.many.frag # found chain 1uvjA in template set T0287 83 :KFKKVYRLL 1uvjA 185 :KFDDAYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18180 # 2bz1A.83.99 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 83 :KFKKVYRLL 2bz1A 100 :NKIRAYALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18181 # 2b6cA.83.123 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 83 :KFKKVYRLL 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18182 # 2audA.83.70 read from T0287.t04.many.frag # found chain 2audA in template set T0287 83 :KFKKVYRLL 2audA 72 :GHEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18183 # 1k55A.83.98 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 83 :KFKKVYRLL 1k55A 119 :VFQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18184 # 1ae9A.83.7 read from T0287.t04.many.frag # found chain 1ae9A in template set T0287 83 :KFKKVYRLL 1ae9A 184 :EYLKIYQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18185 # 1ezwA.83.281 read from T0287.t04.many.frag # found chain 1ezwA in training set T0287 83 :KFKKVYRLL 1ezwA 282 :DFGTAIGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18186 # 1zj8A.83.152 read from T0287.t04.many.frag # found chain 1zj8A in template set T0287 83 :KFKKVYRLL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18187 # 1aa7A.83.107 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 83 :KFKKVYRLL 1aa7A 108 :TFHGAKEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18188 # 2fbqA.83.126 read from T0287.t04.many.frag # found chain 2fbqA in template set T0287 83 :KFKKVYRLL 2fbqA 125 :HLRKYLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18189 # 1zybA.83.135 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 83 :KFKKVYRLL 1zybA 124 :IFRLNYMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18190 # 1j93A.83.168 read from T0287.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)K83 (1j93A)N168 because G (3-10) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1j93A 169 :FTKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18191 # 1m2oA.84.544 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 84 :FKKVYRLLE 1m2oA 545 :GADVIRWLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18192 # 1k8kG.84.90 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 84 :FKKVYRLLE 1k8kG 91 :IEKAVQSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18193 # 1hw1A.84.207 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 84 :FKKVYRLLE 1hw1A 208 :VYETVRRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18194 # 1h6gA.84.161 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 84 :FKKVYRLLE 1h6gA 538 :LDRTAGAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18195 # 2f6kA.84.136 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 84 :FKKVYRLLE 2f6kA 137 :LERVYQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18196 # 1pb7A.84.190 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 84 :FKKVYRLLE 1pb7A 191 :LSTMYRHME Number of specific fragments extracted= 1 number of extra gaps= 0 total=18197 # 1sz9A.84.89 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 84 :FKKVYRLLE 1sz9A 90 :YKRTYLLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18198 # 2audA.84.71 read from T0287.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 2audA 73 :HEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=18199 # 1rwhA.84.32 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 84 :FKKVYRLLE 1rwhA 33 :FAKAITALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18200 # 1sedA.84.69 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 84 :FKKVYRLLE 1sedA 68 :FDKLLALFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18201 # 1e9rA.84.168 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 84 :FKKVYRLLE 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18202 # 1ib2A.84.158 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 84 :FKKVYRLLE 1ib2A 986 :LQFIIDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18203 # 1k55A.84.99 read from T0287.t04.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1k55A 120 :FQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18204 # 1qmgA.84.297 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 84 :FKKVYRLLE 1qmgA 369 :MLALYNSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18205 # 1u00A.84.192 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 84 :FKKVYRLLE 1u00A 581 :IEQAIKNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18206 # 1bc5A.84.50 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 84 :FKKVYRLLE 1bc5A 66 :FGRYLSMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18207 # 2bz1A.84.100 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 84 :FKKVYRLLE 2bz1A 101 :KIRAYALQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18208 # 1ezwA.84.282 read from T0287.t04.many.frag # found chain 1ezwA in training set T0287 84 :FKKVYRLLE 1ezwA 283 :FGTAIGLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18209 # 1bf5A.84.49 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 84 :FKKVYRLLE 1bf5A 199 :LKKMYLMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18210 # 1zhxA.84.335 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 84 :FKKVYRLLE 1zhxA 332 :IAKTKTELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18211 # 1zj8A.84.153 read from T0287.t04.many.frag # found chain 1zj8A in template set T0287 84 :FKKVYRLLE 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18212 # 2fkcA.84.145 read from T0287.t04.many.frag # found chain 2fkcA in template set T0287 84 :FKKVYRLLE 2fkcA 146 :QNIVLNWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18213 # 1owlA.84.272 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 84 :FKKVYRLLE 1owlA 273 :ARNSIRVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18214 # 2aeuA.84.258 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 84 :FKKVYRLLE 2aeuA 259 :IRKAFERAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18215 # 1j93A.84.169 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 84 :FKKVYRLLE 1j93A 169 :FTKIKRLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18216 # 1jx4A.84.209 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 84 :FKKVYRLLE 1jx4A 210 :FDKLKGMIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18217 # 1aa7A.84.108 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 84 :FKKVYRLLE 1aa7A 109 :FHGAKEISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18218 # 1vykA.84.129 read from T0287.t04.many.frag # found chain 1vykA in template set T0287 84 :FKKVYRLLE 1vykA 130 :AEKYYGQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18219 # 1ae9A.84.8 read from T0287.t04.many.frag # found chain 1ae9A in template set T0287 84 :FKKVYRLLE 1ae9A 185 :YLKIYQAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18220 # 2b6cA.84.124 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 84 :FKKVYRLLE 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18221 # 1m2oA.85.545 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 85 :KKVYRLLES 1m2oA 546 :ADVIRWLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18222 # 1hw1A.85.208 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 85 :KKVYRLLES 1hw1A 209 :YETVRRYGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18223 # 1h6gA.85.162 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 85 :KKVYRLLES 1h6gA 539 :DRTAGAIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18224 # 1k8kG.85.91 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 85 :KKVYRLLES 1k8kG 92 :EKAVQSLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18225 # 1sz9A.85.90 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 85 :KKVYRLLES 1sz9A 91 :KRTYLLVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18226 # 2audA.85.72 read from T0287.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 2audA 74 :EARYKLF T0287 93 :S 2audA 82 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=18228 # 1pb7A.85.191 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 85 :KKVYRLLES 1pb7A 192 :STMYRHMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18229 # 2f6kA.85.137 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 85 :KKVYRLLES 2f6kA 138 :ERVYQELDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18230 # 1bf5A.85.50 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 85 :KKVYRLLES 1bf5A 200 :KKMYLMLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18231 # 1qmgA.85.298 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 85 :KKVYRLLES 1qmgA 370 :LALYNSLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18232 # 1e9rA.85.169 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 85 :KKVYRLLES 1e9rA 240 :RELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18233 # 1jx4A.85.210 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 85 :KKVYRLLES 1jx4A 211 :DKLKGMIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18234 # 1rwhA.85.33 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 85 :KKVYRLLES 1rwhA 34 :AKAITALNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18235 # 2fkcA.85.146 read from T0287.t04.many.frag # found chain 2fkcA in template set T0287 85 :KKVYRLLES 2fkcA 147 :NIVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18236 # 2bz1A.85.101 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 85 :KKVYRLLES 2bz1A 102 :IRAYALQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18237 # 1zhxA.85.336 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 85 :KKVYRLLES 1zhxA 333 :AKTKTELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18238 # 2ccyA.85.82 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 85 :KKVYR 2ccyA 83 :LEGWK T0287 92 :ES 2ccyA 90 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18240 # 1vraB.85.64 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 85 :KKVYRLLES 1vraB 261 :ANFYKALQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18241 # 1zybA.85.137 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 85 :KKVYRLLES 1zybA 126 :RLNYMNIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18242 # 1zj8A.85.154 read from T0287.t04.many.frag # found chain 1zj8A in template set T0287 85 :KKVYRLLES 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18243 # 1k55A.85.100 read from T0287.t04.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1k55A 121 :QQIAREV T0287 93 :S 1k55A 129 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=18245 # 1usyA.85.147 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 85 :KKVYRLLES 1usyA 148 :EKVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18246 # 1owlA.85.273 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 85 :KKVYRLLES 1owlA 274 :RNSIRVWQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18247 # 1w2xA.85.693 read from T0287.t04.many.frag # found chain 1w2xA in template set T0287 85 :KKVYRLLES 1w2xA 2169 :RQVATWIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18248 # 2erbA.85.73 read from T0287.t04.many.frag # found chain 2erbA in template set Warning: unaligning (T0287)E92 (2erbA)P81 because P (beta_P) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 2erbA 74 :EKLHDSL T0287 93 :S 2erbA 82 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=18250 # 1jt6A.85.112 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 85 :KKVYRLLES 1jt6A 113 :NEKMNKLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18251 # 1j93A.85.170 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 85 :KKVYRLLES 1j93A 170 :TKIKRLAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18252 # 2b6cA.85.125 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 85 :KKVYRLLES 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18253 # 1x6iA.85.43 read from T0287.t04.many.frag # found chain 1x6iA in training set T0287 85 :KKVYRLLES 1x6iA 41 :RIFIRLLEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18254 # 1aa7A.85.109 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 85 :KKVYRLLES 1aa7A 110 :HGAKEISLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18255 # 1m2oA.86.546 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 86 :KVYRLLESE 1m2oA 547 :DVIRWLDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18256 # 1hw1A.86.209 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 86 :KVYRLLESE 1hw1A 210 :ETVRRYGHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18257 # 1h6gA.86.163 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 86 :KVYRLLESE 1h6gA 540 :RTAGAIRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18258 # 1k8kG.86.92 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 86 :KVYRLLESE 1k8kG 93 :KAVQSLDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18259 # 1jx4A.86.211 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1jx4A 212 :KLKGMI T0287 93 :SE 1jx4A 219 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18261 # 1qmgA.86.299 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 86 :KVYRLLESE 1qmgA 371 :ALYNSLSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18262 # 2fkcA.86.147 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 T0287 86 :KVYRLLES 2fkcA 148 :IVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18263 # 1sz9A.86.91 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1sz9A 92 :RTYLLV T0287 93 :SE 1sz9A 99 :NT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18265 # 1bf5A.86.51 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 86 :KVYRLLESE 1bf5A 201 :KMYLMLDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18266 # 1e9rA.86.170 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1e9rA 241 :ELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18267 # 1rwhA.86.34 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 86 :KVYRLLESE 1rwhA 35 :KAITALNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18268 # 1pb7A.86.192 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 86 :KVYRLLESE 1pb7A 193 :TMYRHMEKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18269 # 2audA.86.73 read from T0287.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLL 2audA 75 :ARYKLF T0287 93 :SE 2audA 82 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18271 # 1vls.86.101 read from T0287.t04.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1vls 136 :ELIQFLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=18272 # 2ccyA.86.83 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 86 :KVYR 2ccyA 84 :EGWK T0287 92 :ESE 2ccyA 90 :ATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18274 # 1w96A.86.529 read from T0287.t04.many.frag # found chain 1w96A in training set T0287 86 :KVYRLLESE 1w96A 542 :YLIKLLETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18275 # 1k55A.86.101 read from T0287.t04.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1k55A 122 :QIAREV T0287 93 :SE 1k55A 129 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18277 # 1w2xA.86.694 read from T0287.t04.many.frag # found chain 1w2xA in template set T0287 86 :KVYRLLESE 1w2xA 2170 :QVATWIEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18278 # 2erbA.86.74 read from T0287.t04.many.frag # found chain 2erbA in template set T0287 86 :KVYRLLESE 2erbA 75 :KLHDSLPSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18279 # 2f6kA.86.138 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 86 :KVYRLLESE 2f6kA 139 :RVYQELDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18280 # 1zj8A.86.155 read from T0287.t04.many.frag # found chain 1zj8A in template set T0287 86 :KVYRLLESE 1zj8A 145 :EIWRRLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18281 # 1z72A.86.85 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 86 :KVYRLLESE 1z72A 83 :KQLGFLEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18282 # 1jt6A.86.113 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 86 :KVYRLLESE 1jt6A 114 :EKMNKLENK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18283 # 1vraB.86.65 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 86 :KVYRLLESE 1vraB 262 :NFYKALQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18284 # 1zybA.86.138 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 86 :KVYRLLESE 1zybA 127 :LNYMNIVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18285 # 1k5nA.86.154 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 86 :KVYRLLESE 1k5nA 155 :QLRAYLEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18286 # 1sauA.86.88 read from T0287.t04.many.frag # found chain 1sauA in training set T0287 86 :KVYRLLESE 1sauA 89 :YIYKLFPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18287 # 1zhxA.86.337 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 86 :KVYRLLESE 1zhxA 334 :KTKTELEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=18288 # 1usyA.86.148 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 86 :KVYRLLESE 1usyA 149 :KVLNLIDTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18289 # 1ib2A.86.160 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 86 :KVYRLLESE 1ib2A 988 :FIIDAFKGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18290 # 1m2oA.87.547 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 87 :VYRLLESET 1m2oA 548 :VIRWLDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18291 # 1hw1A.87.210 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 87 :VYRLLESET 1hw1A 211 :TVRRYGHES Number of specific fragments extracted= 1 number of extra gaps= 0 total=18292 # 1jx4A.87.212 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRLL 1jx4A 213 :LKGMI T0287 93 :SET 1jx4A 219 :EAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18294 # 2fkcA.87.148 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 87 :VYRLLES 2fkcA 149 :VLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18295 # 1vls.87.102 read from T0287.t04.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1vls 137 :LIQFLDN T0287 95 :T 1vls 145 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=18297 # 1sz9A.87.92 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 87 :VYRLLESET 1sz9A 93 :TYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18298 # 1qmgA.87.300 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 87 :VYRLLESET 1qmgA 372 :LYNSLSEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18299 # 1h6gA.87.164 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 87 :VYRLLESET 1h6gA 541 :TAGAIRGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18300 # 1bf5A.87.52 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 87 :VYRLLESET 1bf5A 202 :MYLMLDNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18301 # 1e9rA.87.171 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1e9rA 242 :LFHWTTI T0287 95 :T 1e9rA 250 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=18303 # 1k5nA.87.155 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 87 :VYRLLESET 1k5nA 156 :LRAYLEGEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18304 # 1z72A.87.86 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 87 :VYRLLESET 1z72A 84 :QLGFLEADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18305 # 1k8kG.87.93 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 87 :VYRLLESET 1k8kG 94 :AVQSLDKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18306 # 1w96A.87.530 read from T0287.t04.many.frag # found chain 1w96A in training set T0287 87 :VYRLLESET 1w96A 543 :LIKLLETED Number of specific fragments extracted= 1 number of extra gaps= 0 total=18307 # 1dk8A.87.82 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 87 :VYRLLESET 1dk8A 193 :VSRQTKPAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18308 # 1rwhA.87.35 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 87 :VYRLLESET 1rwhA 36 :AITALNNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18309 # 2ccyA.87.84 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 87 :VYR 2ccyA 85 :GWK T0287 92 :ESET 2ccyA 90 :ATES Number of specific fragments extracted= 2 number of extra gaps= 1 total=18311 # 1usyA.87.149 read from T0287.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1usyA 150 :VLNLIDT T0287 95 :T 1usyA 158 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=18313 # 2audA.87.74 read from T0287.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 87 :VYRLL 2audA 76 :RYKLF T0287 93 :SET 2audA 82 :SPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18315 # 1jt6A.87.114 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 87 :VYRLLESET 1jt6A 115 :KMNKLENKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18316 # 1wwjA.87.64 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 87 :VYRLLESET 1wwjA 65 :LAKILPPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18317 # 1k55A.87.102 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 87 :VYRLLESET 1k55A 123 :IAREVGEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18318 # 1x6iA.87.45 read from T0287.t04.many.frag # found chain 1x6iA in training set T0287 87 :VYRLLESET 1x6iA 43 :FIRLLECDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18319 # 1w2xA.87.695 read from T0287.t04.many.frag # found chain 1w2xA in template set T0287 87 :VYRLLESET 1w2xA 2171 :VATWIEENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18320 # 2erbA.87.75 read from T0287.t04.many.frag # found chain 2erbA in template set Warning: unaligning (T0287)E92 (2erbA)P81 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLL 2erbA 76 :LHDSL T0287 93 :SET 2erbA 82 :SSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=18322 # 1q92A.87.48 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 87 :VY 1q92A 80 :QY T0287 91 :LES 1q92A 84 :LRP T0287 95 :T 1q92A 88 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=18325 # 1zybA.87.139 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 87 :VYRLLESET 1zybA 128 :NYMNIVSNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18326 # 1vraB.87.66 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 87 :VYRLLESET 1vraB 263 :FYKALQLAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18327 # 1o82A.87.30 read from T0287.t04.many.frag # found chain 1o82A in training set T0287 87 :VYRLLESET 1o82A 31 :ILTAVGSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18328 # 1v9mA.87.71 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 87 :VYRL 1v9mA 72 :LPRL T0287 93 :SET 1v9mA 78 :GEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18330 # 1hw1A.88.211 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 88 :YRLLESETM 1hw1A 212 :VRRYGHESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18331 # 1m2oA.88.548 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 88 :YRLLESETM 1m2oA 549 :IRWLDRTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18332 # 1jx4A.88.213 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1jx4A 214 :KGMI T0287 93 :SETM 1jx4A 219 :EAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18334 # 2fkcA.88.149 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 88 :YRLLES 2fkcA 150 :LNWLEK T0287 96 :M 2fkcA 158 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=18336 # 1k5nA.88.156 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 88 :YRLLESETM 1k5nA 157 :RAYLEGECV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18337 # 1h6gA.88.165 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 88 :YRLLESETM 1h6gA 542 :AGAIRGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18338 # 1vls.88.103 read from T0287.t04.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 88 :YRLLES 1vls 138 :IQFLDN T0287 95 :TM 1vls 145 :NM Number of specific fragments extracted= 2 number of extra gaps= 1 total=18340 # 1wwjA.88.65 read from T0287.t04.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1wwjA 66 :AKIL T0287 93 :SETM 1wwjA 71 :PPVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18342 # 1bf5A.88.53 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 88 :YRLLESETM 1bf5A 203 :YLMLDNKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18343 # 1sz9A.88.93 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 88 :YRLLESETM 1sz9A 94 :YLLVDNTTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18344 # 1qmgA.88.301 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 88 :YRLLESETM 1qmgA 373 :YNSLSEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18345 # 1dk8A.88.83 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 88 :YRLLESETM 1dk8A 194 :SRQTKPATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18346 # 1z72A.88.87 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 88 :YRLLESETM 1z72A 85 :LGFLEADED Number of specific fragments extracted= 1 number of extra gaps= 0 total=18347 # 2ccyA.88.85 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 88 :YR 2ccyA 86 :WK T0287 92 :ESETM 2ccyA 90 :ATEST Number of specific fragments extracted= 2 number of extra gaps= 1 total=18349 # 1usyA.88.150 read from T0287.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 88 :YRLLES 1usyA 151 :LNLIDT T0287 95 :TM 1usyA 158 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18351 # 1e9rA.88.172 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLLES 1e9rA 243 :FHWTTI T0287 95 :TM 1e9rA 250 :TF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18353 # 1rwhA.88.36 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 88 :YRLLESETM 1rwhA 37 :ITALNNKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18354 # 1jt6A.88.115 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 88 :YRLLESETM 1jt6A 116 :MNKLENKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18355 # 1zybA.88.140 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 88 :YRLLESETM 1zybA 129 :YMNIVSNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18356 # 1w96A.88.531 read from T0287.t04.many.frag # found chain 1w96A in training set T0287 88 :YRLLESETM 1w96A 544 :IKLLETEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18357 # 1v9mA.88.72 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRL 1v9mA 73 :PRL T0287 94 :ETM 1v9mA 79 :EAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18359 # 1q92A.88.49 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 88 :Y 1q92A 81 :Y T0287 91 :LESETM 1q92A 84 :LRPGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18361 # 1vraB.88.67 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 88 :YRLLESETM 1vraB 264 :YKALQLACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18362 # 1w2xA.88.696 read from T0287.t04.many.frag # found chain 1w2xA in template set T0287 88 :YRLLESETM 1w2xA 2172 :ATWIEENYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18363 # 2erbA.88.76 read from T0287.t04.many.frag # found chain 2erbA in template set T0287 88 :YRLLESETM 2erbA 77 :HDSLPSSMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18364 # 1k8kG.88.94 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 88 :YRLLESETM 1k8kG 95 :VQSLDKNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18365 # 1k55A.88.103 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 88 :YRLLESETM 1k55A 124 :AREVGEVRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18366 # 1m0kA.88.183 read from T0287.t04.many.frag # found chain 1m0kA in training set T0287 88 :YRLLESETM 1m0kA 171 :FKVLRNVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18367 # 1o82A.88.31 read from T0287.t04.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1o82A 32 :LTAV T0287 93 :SETM 1o82A 37 :SGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18369 # 1c9kA.88.107 read from T0287.t04.many.frag # found chain 1c9kA in template set T0287 88 :YRLLESETM 1c9kA 108 :ERAIDDEIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18370 # 1hw1A.89.212 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 89 :RLLESETME 1hw1A 213 :RRYGHESGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18371 # 1m2oA.89.549 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 89 :RLLESETME 1m2oA 550 :RWLDRTLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18372 # 1jx4A.89.214 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 89 :RLLESETME 1jx4A 215 :GMIGEAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18373 # 1k5nA.89.157 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 89 :RLLESETME 1k5nA 158 :AYLEGECVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18374 # 2fkcA.89.150 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 89 :RLLES 2fkcA 151 :NWLEK T0287 96 :ME 2fkcA 158 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18376 # 1wwjA.89.66 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 89 :RLLESETME 1wwjA 67 :KILPPPVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18377 # 1dk8A.89.84 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 89 :RLLESETME 1dk8A 195 :RQTKPATKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18378 # 1sz9A.89.94 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 89 :RLLESETME 1sz9A 95 :LLVDNTTRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18379 # 1h6gA.89.166 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 89 :RLLESETME 1h6gA 543 :GAIRGRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18380 # 1qmgA.89.302 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 89 :RLLESETME 1qmgA 374 :NSLSEEGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18381 # 1z72A.89.88 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 89 :RLLESETME 1z72A 86 :GFLEADEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18382 # 2ccyA.89.86 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 89 :R 2ccyA 87 :K T0287 92 :ESETME 2ccyA 90 :ATESTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18384 # 1bf5A.89.54 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 89 :RLLESETME 1bf5A 204 :LMLDNKRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18385 # 1jt6A.89.116 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 89 :RLLESETME 1jt6A 117 :NKLENKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18386 # 1v9mA.89.73 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RL 1v9mA 74 :RL T0287 94 :ETME 1v9mA 79 :EARE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18388 # 1vls.89.104 read from T0287.t04.many.frag # found chain 1vls in template set T0287 89 :RLLESETME 1vls 139 :QFLDNGNMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18389 # 1zybA.89.141 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 89 :RLLESETME 1zybA 130 :MNIVSNRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18390 # 1q92A.89.50 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 91 :LESETME 1q92A 84 :LRPGLSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18391 # 1usyA.89.151 read from T0287.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)S93 (1usyA)T156 because G (3-10) conformation "forbidden" or filtered. T0287 89 :RLLE 1usyA 152 :NLID T0287 94 :ETME 1usyA 157 :KNLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18393 # 1e9rA.89.173 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 89 :RLLESETME 1e9rA 244 :HWTTIATFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18394 # 1uruA.89.99 read from T0287.t04.many.frag # found chain 1uruA in template set T0287 89 :RLLESETME 1uruA 100 :GASESLWAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18395 # 1k55A.89.104 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 89 :RLLESETME 1k55A 125 :REVGEVRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18396 # 1vraB.89.68 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 89 :RLLESETME 1vraB 265 :KALQLACED Number of specific fragments extracted= 1 number of extra gaps= 0 total=18397 # 1o82A.89.32 read from T0287.t04.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RLL 1o82A 33 :TAV T0287 93 :SETME 1o82A 37 :SGGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18399 # 1qwnA.89.138 read from T0287.t04.many.frag # found chain 1qwnA in training set T0287 89 :RLLESETME 1qwnA 139 :HDLGENKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18400 # 1rwhA.89.37 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 89 :RLLESETME 1rwhA 38 :TALNNKAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18401 # 1zs3A.89.148 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 89 :RLLESETME 1zs3A 149 :VELYGYNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18402 # 1k8kG.89.95 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 89 :RLLESETME 1k8kG 96 :QSLDKNGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18403 # 1zhxA.89.340 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 89 :RLLESETME 1zhxA 337 :TELEETQRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18404 # 1qc7A.89.43 read from T0287.t04.many.frag # found chain 1qc7A in template set T0287 89 :RLLESETME 1qc7A 278 :KNMSKRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18405 # 1hw1A.90.213 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 90 :LLESETMEL 1hw1A 214 :RYGHESGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18406 # 1k5nA.90.158 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 90 :LLESETMEL 1k5nA 159 :YLEGECVEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18407 # 1jx4A.90.215 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 90 :LLESETMEL 1jx4A 216 :MIGEAKAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18408 # 1dk8A.90.85 read from T0287.t04.many.frag # found chain 1dk8A in training set Warning: unaligning (T0287)E92 (1dk8A)K198 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LL 1dk8A 196 :QT T0287 93 :SETMEL 1dk8A 199 :PATKSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18410 # 1wwjA.90.67 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 90 :LLESETMEL 1wwjA 68 :ILPPPVRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18411 # 1m2oA.90.550 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 90 :LLESETMEL 1m2oA 551 :WLDRTLIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18412 # 2fkcA.90.151 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 90 :LLES 2fkcA 152 :WLEK T0287 96 :MEL 2fkcA 158 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18414 # 1sz9A.90.95 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 90 :LLESETMEL 1sz9A 96 :LVDNTTRTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18415 # 1h6gA.90.167 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 90 :LLESETMEL 1h6gA 544 :AIRGRAARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18416 # 2czrA.90.11 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 90 :LLESETMEL 2czrA 4 :ELSPGTKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18417 # 1q92A.90.51 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TMEL 1q92A 88 :LSEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=18419 # 2ccyA.90.87 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMEL 2ccyA 90 :ATESTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18420 # 1z72A.90.89 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 90 :LLESETMEL 1z72A 87 :FLEADEDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18421 # 1g61A.90.74 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 90 :LLESETMEL 1g61A 2075 :IVEDEELDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18422 # 1bf5A.90.55 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 90 :LLESETMEL 1bf5A 205 :MLDNKRKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18423 # 1qmgA.90.303 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 90 :LLESETMEL 1qmgA 375 :SLSEEGKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18424 # 1v9mA.90.74 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1v9mA 75 :LV T0287 94 :ETMEL 1v9mA 79 :EAREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18426 # 1zs3A.90.149 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 90 :LLESETMEL 1zs3A 150 :ELYGYNLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18427 # 1jt6A.90.117 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 90 :LLESETMEL 1jt6A 118 :KLENKYIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18428 # 1uruA.90.100 read from T0287.t04.many.frag # found chain 1uruA in template set T0287 90 :LLESETMEL 1uruA 101 :ASESLWADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18429 # 1kaeA.90.78 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 90 :LLESETMEL 1kaeA 79 :RLSDELKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18430 # 1zybA.90.142 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 90 :LLESETMEL 1zybA 131 :NIVSNRAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18431 # 1e9rA.90.174 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 90 :LLESETMEL 1e9rA 245 :WTTIATFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18432 # 1k8kG.90.96 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 90 :LLESETMEL 1k8kG 97 :SLDKNGVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18433 # 1k55A.90.105 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 90 :LLESETMEL 1k55A 126 :EVGEVRMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18434 # 1lc5A.90.271 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 90 :LLESETMEL 1lc5A 272 :WLREEGARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18435 # 1o82A.90.33 read from T0287.t04.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1o82A 34 :AV T0287 93 :SETMEL 1o82A 37 :SGGLSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18437 # 1zz1A.90.74 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 90 :LLESETMEL 1zz1A 75 :AHSAAHLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18438 # 1q6uA.90.97 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 90 :LLESETMEL 1q6uA 98 :DNEAKGKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18439 # 1fi4A.90.355 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 90 :LLESETMEL 1fi4A 336 :KFTTEQLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18440 # 1hw1A.91.214 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 91 :LESETMELL 1hw1A 215 :YGHESGEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18441 # 1k5nA.91.159 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 91 :LESETMELL 1k5nA 160 :LEGECVEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18442 # 1jx4A.91.216 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 91 :L 1jx4A 217 :I T0287 93 :SETMELL 1jx4A 219 :EAKAKYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18444 # 1dk8A.91.86 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 91 :LESETMELL 1dk8A 197 :TKPATKSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18445 # 1wwjA.91.68 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 91 :LESETMELL 1wwjA 69 :LPPPVRKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=18446 # 1q92A.91.52 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 91 :LESETMELL 1q92A 84 :LRPGLSEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18447 # 2czrA.91.12 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E92 (2czrA)S6 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 2czrA 5 :L T0287 93 :SETMELL 2czrA 7 :PGTKKVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18449 # 2fkcA.91.152 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 91 :LES 2fkcA 153 :LEK T0287 96 :MELL 2fkcA 158 :VLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18451 # 1m2oA.91.551 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 91 :LESETMELL 1m2oA 552 :LDRTLIKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18452 # 1sz9A.91.96 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 91 :LESETMELL 1sz9A 97 :VDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18453 # 1h6gA.91.168 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 91 :LESETMELL 1h6gA 545 :IRGRAARVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18454 # 2ccyA.91.88 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMELL 2ccyA 90 :ATESTKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18455 # 1g61A.91.75 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2076 :VEDEELDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18456 # 1zz1A.91.75 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 91 :LESETMELL 1zz1A 76 :HSAAHLENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18457 # 1z72A.91.90 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 91 :LESETMELL 1z72A 88 :LEADEDGYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18458 # 1fi4A.91.356 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)E92 (1fi4A)T338 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1fi4A 337 :F T0287 93 :SETMELL 1fi4A 339 :TEQLEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18460 # 1lc5A.91.272 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 91 :LESETMELL 1lc5A 273 :LREEGARFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18461 # 1oohA.91.78 read from T0287.t04.many.frag # found chain 1oohA in training set T0287 91 :LESETMELL 1oohA 77 :VPPEMMEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18462 # 1zs3A.91.150 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 91 :LESETMELL 1zs3A 151 :LYGYNLQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18463 # 1v9mA.91.75 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 91 :L 1v9mA 76 :V T0287 94 :ETMELL 1v9mA 79 :EAREAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18465 # 1jt6A.91.118 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 91 :LESETMELL 1jt6A 119 :LENKYIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18466 # 1kaeA.91.79 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 91 :LESETMELL 1kaeA 80 :LSDELKQAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18467 # 1l5aA.91.214 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 91 :LESETMELL 1l5aA 215 :LNSQLNHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18468 # 1qmgA.91.304 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 91 :LESETMELL 1qmgA 376 :LSEEGKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18469 # 1uruA.91.101 read from T0287.t04.many.frag # found chain 1uruA in template set T0287 91 :LESETMELL 1uruA 102 :SESLWADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18470 # 1ekqA.91.145 read from T0287.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELL 1ekqA 148 :GDIIRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18471 # 1fobA.91.109 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 91 :LESETMELL 1fobA 110 :LYNYTLEVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18472 # 1bf5A.91.56 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 91 :LESETMELL 1bf5A 206 :LDNKRKEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18473 # 1g61A.91.166 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2167 :VEDDELEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18474 # 1za0A.91.206 read from T0287.t04.many.frag # found chain 1za0A in template set Warning: unaligning (T0287)L91 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)R208 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)R208 T0287 93 :SETMELL 1za0A 209 :DETIAAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18475 # 1hw1A.92.215 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 92 :ESETMELLH 1hw1A 216 :GHESGEIWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18476 # 1k5nA.92.160 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 92 :ESETMELLH 1k5nA 161 :EGECVEWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18477 # 1jx4A.92.217 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1jx4A 219 :EAKAKYLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18478 # 1q92A.92.53 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 92 :ESETMELLH 1q92A 85 :RPGLSEKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18479 # 1wwjA.92.69 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 92 :ESETMELLH 1wwjA 70 :PPPVRKIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18480 # 1dk8A.92.87 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 92 :ESETMELLH 1dk8A 198 :KPATKSFIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18481 # 2czrA.92.13 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E92 (2czrA)S6 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 2czrA 7 :PGTKKVYT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18482 # 2fkcA.92.153 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 92 :ES 2fkcA 154 :EK T0287 96 :MELLH 2fkcA 158 :VLVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18484 # 1zz1A.92.76 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 92 :ESETMELLH 1zz1A 77 :SAAHLENMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18485 # 1h6gA.92.169 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 92 :ESETMELLH 1h6gA 546 :RGRAARVIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18486 # 1m2oA.92.552 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 92 :ESETMELLH 1m2oA 553 :DRTLIKLCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18487 # 2ccyA.92.89 read from T0287.t04.many.frag # found chain 2ccyA in training set T0287 92 :ESETMELLH 2ccyA 90 :ATESTKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18488 # 1fi4A.92.357 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 92 :ESETMELLH 1fi4A 338 :TTEQLEAFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18489 # 1g61A.92.76 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 92 :ESETMELLH 1g61A 2077 :EDEELDRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18490 # 1y1pA.92.107 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 92 :ESETMELLH 1y1pA 109 :IGGTLNALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18491 # 1sz9A.92.97 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 92 :ESETMELLH 1sz9A 98 :DNTTRTKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18492 # 1zs3A.92.151 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 92 :ESETMELLH 1zs3A 152 :YGYNLQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18493 # 1lc5A.92.273 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 92 :ESETMELLH 1lc5A 274 :REEGARFYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18494 # 1uhvA.92.31 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 92 :ESETMELLH 1uhvA 32 :QKEYIETLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18495 # 1l5aA.92.215 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 92 :ESETMELLH 1l5aA 216 :NSQLNHLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18496 # 1a4iA.92.77 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 92 :ESETMELLH 1a4iA 78 :ESEVMKYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18497 # 1fobA.92.110 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 92 :ESETMELLH 1fobA 111 :YNYTLEVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18498 # 1e9rA.92.176 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 92 :ESETMELLH 1e9rA 247 :TIATFDDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18499 # 1ekqA.92.146 read from T0287.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELLH 1ekqA 148 :GDIIRLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18500 # 1oohA.92.79 read from T0287.t04.many.frag # found chain 1oohA in training set Warning: unaligning (T0287)E92 (1oohA)P78 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1oohA 79 :PEMMEMSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=18501 # 1q6uA.92.99 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 92 :ESETMELLH 1q6uA 100 :EAKGKEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18502 # 3nul.92.41 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)E92 (3nul)K43 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 3nul 44 :PQEIDGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18503 # 1qtwA.92.44 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 92 :ESETMELLH 1qtwA 45 :TTQTIDEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18504 # 1jftA.92.27 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 92 :ESETMELLH 1jftA 29 :AEETRNAVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18505 # 1gsoA.92.305 read from T0287.t04.many.frag # found chain 1gsoA in training set T0287 92 :ESETMELLH 1gsoA 304 :KSDLVELCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18506 # 1hw1A.93.216 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 93 :SETMELLHA 1hw1A 217 :HESGEIWHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18507 # 1k5nA.93.161 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 93 :SETMELLHA 1k5nA 162 :GECVEWLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18508 # 1jx4A.93.218 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 93 :SETMELLHA 1jx4A 219 :EAKAKYLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18509 # 1q92A.93.54 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 93 :S 1q92A 86 :P T0287 95 :TMELLHA 1q92A 88 :LSEKAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18511 # 2fkcA.93.154 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 93 :S 2fkcA 155 :K T0287 96 :MELLHA 2fkcA 158 :VLVLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18513 # 2czrA.93.14 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 93 :SETMELLHA 2czrA 7 :PGTKKVYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18514 # 1y1pA.93.108 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 93 :SETMELLHA 1y1pA 110 :GGTLNALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18515 # 1e9rA.93.177 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 93 :SETMELLHA 1e9rA 248 :IATFDDLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18516 # 1fi4A.93.358 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 93 :SETMELLHA 1fi4A 339 :TEQLEAFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18517 # 1zz1A.93.77 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 93 :SETMELLHA 1zz1A 78 :AAHLENMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18518 # 1h6gA.93.170 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 93 :SETMELLHA 1h6gA 547 :GRAARVIHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18519 # 1wwjA.93.70 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 93 :SETMELLHA 1wwjA 71 :PPVRKIIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18520 # 1dk8A.93.88 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 93 :SETMELLHA 1dk8A 199 :PATKSFIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18521 # 2ccyA.93.90 read from T0287.t04.many.frag # found chain 2ccyA in training set T0287 93 :SETMELLHA 2ccyA 91 :TESTKLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18522 # 1lc5A.93.274 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 93 :SETMELLHA 1lc5A 275 :EEGARFYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18523 # 1m2oA.93.553 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 93 :SETMELLHA 1m2oA 554 :RTLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18524 # 1zs3A.93.152 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 93 :SETMELLHA 1zs3A 153 :GYNLQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18525 # 1g61A.93.77 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 93 :SETMELLHA 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18526 # 1uhvA.93.32 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 93 :SETMELLHA 1uhvA 33 :KEYIETLKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18527 # 1g8mA.93.126 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 93 :SETMELLHA 1g8mA 127 :IGGVALLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18528 # 1uq5A.93.204 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 93 :SETMELLHA 1uq5A 209 :NSWGRLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18529 # 1qtwA.93.45 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 93 :SETMELLHA 1qtwA 46 :TQTIDEFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18530 # 1a4iA.93.78 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 93 :SETMELLHA 1a4iA 79 :SEVMKYITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18531 # 1jftA.93.28 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 93 :SETMELLHA 1jftA 30 :EETRNAVWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18532 # 1l5aA.93.216 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 93 :SETMELLHA 1l5aA 217 :SQLNHLLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18533 # 1fobA.93.111 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 93 :SETMELLHA 1fobA 112 :NYTLEVCNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18534 # 1q6uA.93.100 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 93 :SETMELLHA 1q6uA 101 :AKGKEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18535 # 1oohA.93.80 read from T0287.t04.many.frag # found chain 1oohA in training set T0287 93 :SETMELLHA 1oohA 79 :PEMMEMSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18536 # 1wgzA.93.189 read from T0287.t04.many.frag # found chain 1wgzA in template set T0287 93 :SETMELLHA 1wgzA 190 :EGLKGLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18537 # 1lycA.93.95 read from T0287.t04.many.frag # found chain 1lycA in training set T0287 93 :SETMELLHA 1lycA 96 :TDTVEALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18538 # 1hw1A.94.217 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 94 :ETMELLHAI 1hw1A 218 :ESGEIWHRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18539 # 1k5nA.94.162 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 94 :ETMELLHAI 1k5nA 163 :ECVEWLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18540 # 1q92A.94.55 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 95 :TMELLHAI 1q92A 88 :LSEKAISI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18541 # 1y1pA.94.109 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 94 :ETMELLHAI 1y1pA 111 :GTLNALRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18542 # 1jx4A.94.219 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 94 :ETMELLHAI 1jx4A 220 :AKAKYLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18543 # 1zz1A.94.78 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 94 :ETMELLHAI 1zz1A 79 :AHLENMKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18544 # 2fkcA.94.155 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAI 2fkcA 158 :VLVLTDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18545 # 2czrA.94.15 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 94 :ETMELLHAI 2czrA 8 :GTKKVYTQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18546 # 1uhvA.94.33 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 94 :ETMELLHAI 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18547 # 1h6gA.94.171 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 94 :ETMELLHAI 1h6gA 548 :RAARVIHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18548 # 1fi4A.94.359 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 94 :ETMELLHAI 1fi4A 340 :EQLEAFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18549 # 1g8mA.94.127 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 94 :ETMELLHAI 1g8mA 128 :GGVALLRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18550 # 1e9rA.94.178 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 95 :TMELLHAI 1e9rA 250 :TFDDLRGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=18551 # 1zs3A.94.153 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 94 :ETMELLHAI 1zs3A 154 :YNLQVIRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18552 # 1lc5A.94.275 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 94 :ETMELLHAI 1lc5A 276 :EGARFYQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18553 # 1wwjA.94.71 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 94 :ETMELLHAI 1wwjA 72 :PVRKIIGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18554 # 1qtwA.94.46 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 94 :ETMELLHAI 1qtwA 47 :QTIDEFKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18555 # 1uq5A.94.205 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 94 :ETMELLHAI 1uq5A 210 :SWGRLSTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18556 # 1lniA.94.13 read from T0287.t04.many.frag # found chain 1lniA in training set T0287 94 :ETMELLHAI 1lniA 14 :EATDTLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18557 # 1lycA.94.96 read from T0287.t04.many.frag # found chain 1lycA in training set T0287 94 :ETMELLHAI 1lycA 97 :DTVEALRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18558 # 1fobA.94.112 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 94 :ETMELLHAI 1fobA 113 :YTLEVCNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18559 # 1q6uA.94.101 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 94 :ETMELLHAI 1q6uA 102 :KGKEYREKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18560 # 1g61A.94.78 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 94 :ETMELLHAI 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18561 # 1a4iA.94.79 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 94 :ETMELLHAI 1a4iA 80 :EVMKYITSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18562 # 1m2oA.94.554 read from T0287.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0287)I102 (1m2oA)Y563 because G (3-10) conformation "forbidden" or filtered. T0287 94 :ETMELLHA 1m2oA 555 :TLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18563 # 1wgzA.94.190 read from T0287.t04.many.frag # found chain 1wgzA in template set T0287 94 :ETMELLHAI 1wgzA 191 :GLKGLLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18564 # 1jftA.94.29 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 94 :ETMELLHAI 1jftA 31 :ETRNAVWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18565 # 1l5aA.94.217 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 94 :ETMELLHAI 1l5aA 218 :QLNHLLLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18566 # 1vpbA.94.139 read from T0287.t04.many.frag # found chain 1vpbA in training set T0287 94 :ETMELLHAI 1vpbA 128 :DKIEMAKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18567 # 2ccyA.94.91 read from T0287.t04.many.frag # found chain 2ccyA in training set T0287 94 :ETMELLHAI 2ccyA 92 :ESTKLAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18568 # 1hw1A.95.218 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 95 :TMELLHAIA 1hw1A 219 :SGEIWHRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18569 # 1k5nA.95.163 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 95 :TMELLHAIA 1k5nA 164 :CVEWLRRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18570 # 1y1pA.95.110 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 95 :TMELLHAIA 1y1pA 112 :TLNALRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18571 # 1q92A.95.56 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 95 :TMELLHAIA 1q92A 88 :LSEKAISIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18572 # 1g8mA.95.128 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 95 :TMELLHAIA 1g8mA 129 :GVALLRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18573 # 1uq5A.95.206 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 95 :TMELLHAIA 1uq5A 211 :WGRLSTAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18574 # 1h6gA.95.172 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 95 :TMELLHAIA 1h6gA 549 :AARVIHVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18575 # 1zs3A.95.154 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 95 :TMELLHAIA 1zs3A 155 :NLQVIRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18576 # 2fkcA.95.156 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAIA 2fkcA 158 :VLVLTDIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18577 # 1uhvA.95.34 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 95 :TMELLHAIA 1uhvA 35 :YIETLKYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18578 # 1lc5A.95.276 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 95 :TMELLHAIA 1lc5A 277 :GARFYQALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18579 # 1zz1A.95.79 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 95 :TMELLHAIA 1zz1A 80 :HLENMKRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18580 # 1fi4A.95.360 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 95 :TMELLHAIA 1fi4A 341 :QLEAFNHQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18581 # 2czrA.95.16 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 95 :TMELLHAIA 2czrA 9 :TKKVYTQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18582 # 1lniA.95.14 read from T0287.t04.many.frag # found chain 1lniA in training set T0287 95 :TMELLHAIA 1lniA 15 :ATDTLNLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18583 # 1jx4A.95.220 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 95 :TMELLHAIA 1jx4A 221 :KAKYLISLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18584 # 1q6uA.95.102 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 95 :TMELLHAIA 1q6uA 103 :GKEYREKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18585 # 1qtwA.95.47 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 95 :TMELLHAIA 1qtwA 48 :TIDEFKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18586 # 1q79A.95.397 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 95 :TMELLHAIA 1q79A 398 :IRILVGSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18587 # 1vpbA.95.140 read from T0287.t04.many.frag # found chain 1vpbA in training set T0287 95 :TMELLHAIA 1vpbA 129 :KIEMAKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18588 # 1wgzA.95.191 read from T0287.t04.many.frag # found chain 1wgzA in template set T0287 95 :TMELLHAIA 1wgzA 192 :LKGLLDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18589 # 1lycA.95.97 read from T0287.t04.many.frag # found chain 1lycA in training set T0287 95 :TMELLHAIA 1lycA 98 :TVEALRAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18590 # 1fobA.95.113 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 95 :TMELLHAIA 1fobA 114 :TLEVCNTFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18591 # 1wa5C.95.311 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 95 :TMELLHAIA 1wa5C 312 :SLSFLTAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18592 # 1jftA.95.30 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 95 :TMELLHAIA 1jftA 32 :TRNAVWAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18593 # 1gxqA.95.35 read from T0287.t04.many.frag # found chain 1gxqA in template set T0287 95 :TMELLHAIA 1gxqA 159 :EFKLLHFFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18594 # 1e9rA.95.179 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 95 :TMELLHAIA 1e9rA 250 :TFDDLRGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18595 # 3nul.95.44 read from T0287.t04.many.frag # found chain 3nul in training set T0287 95 :TMELLHAIA 3nul 46 :EIDGIKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18596 # 1m2oA.95.555 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 95 :TMELLHAIA 1m2oA 556 :LIKLCQKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18597 # 1a4iA.95.80 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 95 :TMELLHAIA 1a4iA 81 :VMKYITSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18598 # 1y1pA.96.111 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 96 :MELLHAIAE 1y1pA 113 :LNALRAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18599 # 1hw1A.96.219 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. T0287 96 :MELL 1hw1A 220 :GEIW T0287 101 :AIAE 1hw1A 225 :RMQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18601 # 1k5nA.96.164 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 96 :MELLHAIAE 1k5nA 165 :VEWLRRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18602 # 1q92A.96.57 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 96 :MELLHAIAE 1q92A 89 :SEKAISIWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18603 # 1g8mA.96.129 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 96 :MELLHAIAE 1g8mA 130 :VALLRAAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18604 # 1zz1A.96.80 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 96 :MELLHAIAE 1zz1A 81 :LENMKRVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18605 # 1uhvA.96.35 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 96 :MELLHAIAE 1uhvA 36 :IETLKYVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18606 # 1zs3A.96.155 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 96 :MELLHAIAE 1zs3A 156 :LQVIRNLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18607 # 1uq5A.96.207 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 96 :MELLHAIAE 1uq5A 212 :GRLSTAIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18608 # 1lc5A.96.277 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 96 :MELLHAIAE 1lc5A 278 :ARFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18609 # 1fi4A.96.361 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 96 :MELLHAIAE 1fi4A 342 :LEAFNHQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18610 # 1q6uA.96.103 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 96 :MELLHAIAE 1q6uA 104 :KEYREKFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18611 # 1qtwA.96.48 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 96 :MELLHAIAE 1qtwA 49 :IDEFKAACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18612 # 1wa5C.96.312 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 96 :MELLHAIAE 1wa5C 313 :LSFLTAVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18613 # 2fkcA.96.157 read from T0287.t04.many.frag # found chain 2fkcA in template set T0287 96 :MELLHAIAE 2fkcA 158 :VLVLTDILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18614 # 3nul.96.45 read from T0287.t04.many.frag # found chain 3nul in training set T0287 96 :MELLHAIAE 3nul 47 :IDGIKKDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18615 # 1h6gA.96.173 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)H100 (1h6gA)H554 because H (helix) conformation "forbidden" or filtered. T0287 96 :MELL 1h6gA 550 :ARVI T0287 101 :AIAE 1h6gA 555 :VVTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18617 # 1lycA.96.98 read from T0287.t04.many.frag # found chain 1lycA in training set T0287 96 :MELLHAIAE 1lycA 99 :VEALRAVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18618 # 1q79A.96.398 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 96 :MELLHAIAE 1q79A 399 :RILVGSLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18619 # 1jx4A.96.221 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 96 :MELLHAIAE 1jx4A 222 :AKYLISLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18620 # 1vpbA.96.141 read from T0287.t04.many.frag # found chain 1vpbA in training set T0287 96 :MELLHAIAE 1vpbA 130 :IEMAKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18621 # 1lniA.96.15 read from T0287.t04.many.frag # found chain 1lniA in training set T0287 96 :MELLHAIAE 1lniA 16 :TDTLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18622 # 1jftA.96.31 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 96 :MELLHAIAE 1jftA 33 :RNAVWAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18623 # 1zl0A.96.68 read from T0287.t04.many.frag # found chain 1zl0A in template set T0287 96 :MELLHAIAE 1zl0A 67 :LEDLHNAFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18624 # 1gxqA.96.36 read from T0287.t04.many.frag # found chain 1gxqA in template set T0287 96 :MELLHAIAE 1gxqA 160 :FKLLHFFMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18625 # 2czrA.96.17 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 96 :MELLHAIAE 2czrA 10 :KKVYTQVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18626 # 1a4iA.96.81 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 96 :MELLHAIAE 1a4iA 82 :MKYITSLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18627 # 2bptA.96.681 read from T0287.t04.many.frag # found chain 2bptA in template set T0287 96 :MELLHAIAE 2bptA 682 :MNVLAQMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18628 # 1wgzA.96.192 read from T0287.t04.many.frag # found chain 1wgzA in template set T0287 96 :MELLHAIAE 1wgzA 193 :KGLLDRILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18629 # 1fobA.96.114 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 96 :MELLHAIAE 1fobA 115 :LEVCNTFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18630 # 1y1pA.97.112 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 97 :ELLHAIAEN 1y1pA 114 :NALRAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18631 # 1q92A.97.58 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 97 :ELLHAIAEN 1q92A 90 :EKAISIWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=18632 # 1k5nA.97.165 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 97 :ELLHAIAEN 1k5nA 166 :EWLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18633 # 1hw1A.97.220 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 97 :ELLHAIAEN 1hw1A 221 :EIWHRMQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18634 # 1uhvA.97.36 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 97 :ELLHAIAEN 1uhvA 37 :ETLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18635 # 1lc5A.97.278 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 97 :ELLHAIAEN 1lc5A 279 :RFYQALCQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18636 # 1zz1A.97.81 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 97 :ELLHAIAEN 1zz1A 82 :ENMKRVSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18637 # 1q79A.97.399 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 97 :ELLHAIAEN 1q79A 400 :ILVGSLEKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18638 # 1g8mA.97.130 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 97 :ELLHAIAEN 1g8mA 131 :ALLRAAAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18639 # 1uq5A.97.208 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 97 :ELLHAIAEN 1uq5A 213 :RLSTAIQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=18640 # 1zs3A.97.156 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 97 :ELLHAIAEN 1zs3A 157 :QVIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18641 # 2czrA.97.18 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 97 :ELLHAIAEN 2czrA 11 :KVYTQVRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18642 # 1wa5C.97.313 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 97 :ELLHAIAEN 1wa5C 314 :SFLTAVTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18643 # 1q6uA.97.104 read from T0287.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N105 (1q6uA)E113 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1q6uA 105 :EYREKFAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18644 # 1n5uA.97.258 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1n5uA 259 :DLAKYICE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18645 # 1lniA.97.16 read from T0287.t04.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)N105 (1lniA)D25 because L (left) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1lniA 17 :DTLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=18646 # 3nul.97.46 read from T0287.t04.many.frag # found chain 3nul in training set T0287 97 :ELLHAIAEN 3nul 48 :DGIKKDFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18647 # 1zl0A.97.69 read from T0287.t04.many.frag # found chain 1zl0A in template set T0287 97 :ELLHAIAEN 1zl0A 68 :EDLHNAFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18648 # 1h6gA.97.174 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 97 :ELLHAIAEN 1h6gA 551 :RVIHVVTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18649 # 1fi4A.97.362 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N105 (1fi4A)S351 because G (3-10) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1fi4A 343 :EAFNHQFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18650 # 1g5aA.97.80 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1g5aA 81 :DIDIAREN Number of specific fragments extracted= 1 number of extra gaps= 1 total=18651 # 1gxqA.97.37 read from T0287.t04.many.frag # found chain 1gxqA in template set T0287 97 :ELLHAIAEN 1gxqA 161 :KLLHFFMTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18652 # 1vpbA.97.142 read from T0287.t04.many.frag # found chain 1vpbA in training set T0287 97 :ELLHAIAEN 1vpbA 131 :EMAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18653 # 1qtwA.97.49 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 97 :ELLHAIAEN 1qtwA 50 :DEFKAACEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18654 # 1w79A.97.6 read from T0287.t04.many.frag # found chain 1w79A in template set Warning: unaligning (T0287)N105 (1w79A)D15 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1w79A 7 :EDIDAILE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18655 # 1a4iA.97.82 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 97 :ELLHAIAEN 1a4iA 83 :KYITSLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=18656 # 1t1vA.97.47 read from T0287.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 97 :ELLHAIA 1t1vA 48 :DEMRTLA T0287 105 :N 1t1vA 56 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=18658 # 1kpsB.97.140 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 97 :ELLHAIAEN 1kpsB 559 :PLLLAFVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18659 # 1jftA.97.32 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 97 :ELLHAIAEN 1jftA 34 :NAVWAAIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18660 # 1colA.97.60 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 97 :ELL 1colA 61 :ASL T0287 102 :IAEN 1colA 66 :ITAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18662 # 1y1pA.98.113 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 98 :LLHAIAENP 1y1pA 115 :ALRAAAATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18663 # 1q92A.98.59 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 98 :LLHAIAENP 1q92A 91 :KAISIWESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18664 # 1n5uA.98.259 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 98 :LLHAIAENP 1n5uA 260 :LAKYICENQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18665 # 1k5nA.98.166 read from T0287.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1k5nA 167 :WLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=18666 # 1uhvA.98.37 read from T0287.t04.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1uhvA 38 :TLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=18667 # 1zz1A.98.82 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 98 :LLHAIAENP 1zz1A 83 :NMKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18668 # 3nul.98.47 read from T0287.t04.many.frag # found chain 3nul in training set T0287 98 :LLHAIAENP 3nul 49 :GIKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18669 # 1g5aA.98.81 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 98 :LLHAIAENP 1g5aA 82 :IDIARENNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18670 # 1lc5A.98.279 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 98 :LLHAIAENP 1lc5A 280 :FYQALCQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18671 # 1t1vA.98.48 read from T0287.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 98 :LLHAIA 1t1vA 49 :EMRTLA T0287 105 :NP 1t1vA 56 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18673 # 1kpsB.98.141 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 98 :LLHAIAENP 1kpsB 560 :LLLAFVTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18674 # 1colA.98.61 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 98 :LL 1colA 62 :SL T0287 102 :IAE 1colA 66 :ITA T0287 106 :P 1colA 70 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=18677 # 1q79A.98.400 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 98 :LLHAIAENP 1q79A 401 :LVGSLEKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18678 # 1g8mA.98.131 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 98 :LLHAIAENP 1g8mA 132 :LLRAAAKNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18679 # 1hw1A.98.221 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)P106 because last residue in template chain is (1hw1A)L230 T0287 98 :LLHAIAEN 1hw1A 222 :IWHRMQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18680 # 1a4iA.98.83 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 98 :LLHAIAENP 1a4iA 84 :YITSLNEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18681 # 1wa5C.98.314 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 98 :LLHAIAENP 1wa5C 315 :FLTAVTRIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18682 # 1f74A.98.149 read from T0287.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)N105 (1f74A)N157 because P (beta_P) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1f74A 150 :QFGELYK T0287 106 :P 1f74A 158 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18684 # 1q6uA.98.105 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 98 :LLHAIAENP 1q6uA 106 :YREKFAKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18685 # 1zs3A.98.157 read from T0287.t04.many.frag # found chain 1zs3A in template set Warning: unaligning (T0287)P106 (1zs3A)L166 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1zs3A 158 :VIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=18686 # 1lniA.98.17 read from T0287.t04.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 T0287 98 :LLHAIAEN 1lniA 18 :TLNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=18687 # 1uq5A.98.209 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 98 :LLHAIAENP 1uq5A 214 :LSTAIQESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18688 # 1zl0A.98.70 read from T0287.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)H100 (1zl0A)H71 because H (helix) conformation "forbidden" or filtered. T0287 98 :LL 1zl0A 69 :DL T0287 101 :AIAENP 1zl0A 72 :NAFDMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18690 # 1fi4A.98.363 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 98 :LLHAIAENP 1fi4A 344 :AFNHQFESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18691 # 1w79A.98.7 read from T0287.t04.many.frag # found chain 1w79A in template set Warning: unaligning (T0287)N105 (1w79A)D15 because P (beta_P) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1w79A 8 :DIDAILE T0287 106 :P 1w79A 16 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18693 # 2czrA.98.19 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 98 :LLHAIAENP 2czrA 12 :VYTQVRYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18694 # 1h80A.98.44 read from T0287.t04.many.frag # found chain 1h80A in training set T0287 98 :LLHAIAENP 1h80A 72 :AINAISRKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18695 # 1gxqA.98.38 read from T0287.t04.many.frag # found chain 1gxqA in template set T0287 98 :LLHAIAENP 1gxqA 162 :LLHFFMTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18696 # 1no7A.98.162 read from T0287.t04.many.frag # found chain 1no7A in template set T0287 98 :LLHAIAENP 1no7A 613 :AVRGAFDDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18697 # 1vpbA.98.143 read from T0287.t04.many.frag # found chain 1vpbA in training set Warning: unaligning (T0287)P106 (1vpbA)A140 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1vpbA 132 :MAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18698 # 1q92A.99.60 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 99 :LHAIAENPN 1q92A 92 :AISIWESKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18699 # 1y1pA.99.114 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 99 :LHAIAENPN 1y1pA 116 :LRAAAATPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18700 # 1n5uA.99.260 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 99 :LHAIAENPN 1n5uA 261 :AKYICENQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18701 # 1g5aA.99.82 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 99 :LHAIAENPN 1g5aA 83 :DIARENNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18702 # 3nul.99.48 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 3nul 50 :IKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=18703 # 1colA.99.62 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 99 :L 1colA 63 :L T0287 102 :IAENPN 1colA 66 :ITANPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18705 # 1f74A.99.150 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 99 :LHAIAENPN 1f74A 151 :FGELYKNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18706 # 1lc5A.99.280 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 99 :LHAIAENPN 1lc5A 281 :YQALCQLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18707 # 1zz1A.99.83 read from T0287.t04.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 T0287 99 :LHAIAENP 1zz1A 84 :MKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=18708 # 1t1vA.99.49 read from T0287.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N105 (1t1vA)N56 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1t1vA)K58 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIA 1t1vA 50 :MRTLA T0287 106 :P 1t1vA 57 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=18710 # 1kpsB.99.142 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 99 :LHAIAENPN 1kpsB 561 :LLAFVTKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18711 # 1uhvA.99.38 read from T0287.t04.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1uhvA 39 :LKYVKEN T0287 107 :N 1uhvA 47 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=18713 # 1k5nA.99.167 read from T0287.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1k5nA 168 :LRRYLEN T0287 107 :N 1k5nA 176 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=18715 # 1h80A.99.45 read from T0287.t04.many.frag # found chain 1h80A in training set T0287 99 :LHAIAENPN 1h80A 73 :INAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18716 # 1a4iA.99.84 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 99 :LHAIAENPN 1a4iA 85 :ITSLNEDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=18717 # 1q79A.99.401 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 99 :LHAIAENPN 1q79A 402 :VGSLEKNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18718 # 1g8mA.99.132 read from T0287.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0287)N105 (1g8mA)N139 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1g8mA 133 :LRAAAK T0287 106 :PN 1g8mA 140 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18720 # 1q6uA.99.106 read from T0287.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N105 (1q6uA)E113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1q6uA)G115 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1q6uA 107 :REKFAK T0287 106 :P 1q6uA 114 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=18722 # 1gvjA.99.79 read from T0287.t04.many.frag # found chain 1gvjA in training set T0287 99 :LHAIAENPN 1gvjA 375 :WGKRKNKPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18723 # 2ffsA.99.28 read from T0287.t04.many.frag # found chain 2ffsA in template set T0287 99 :LHAIAENPN 2ffsA 29 :LVCRAREPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18724 # 1fi4A.99.364 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 99 :LHAIAENPN 1fi4A 345 :FNHQFESSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18725 # 1wa5C.99.315 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 99 :LHAIAENPN 1wa5C 316 :LTAVTRIPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18726 # 1zl0A.99.71 read from T0287.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)N105 (1zl0A)M76 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1zl0A 70 :LHNAFD T0287 106 :PN 1zl0A 77 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18728 # 1rloA.99.92 read from T0287.t04.many.frag # found chain 1rloA in template set T0287 99 :LHAIAENPN 1rloA 93 :IGELLKDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18729 # 1z5zA.99.155 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 99 :LHAIAENPN 1z5zA 791 :ISKFQNNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18730 # 1ye8A.99.121 read from T0287.t04.many.frag # found chain 1ye8A in training set T0287 99 :LHAIAENPN 1ye8A 122 :VRQIMHDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18731 # 1vjhA.99.20 read from T0287.t04.many.frag # found chain 1vjhA in template set T0287 99 :LHAIAENPN 1vjhA 21 :FSAFVEDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18732 # 1uq5A.99.210 read from T0287.t04.many.frag # found chain 1uq5A in training set Warning: unaligning (T0287)N105 (1uq5A)S221 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1uq5A 215 :STAIQE T0287 106 :PN 1uq5A 222 :NQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18734 # 1lniA.99.18 read from T0287.t04.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1lniA)P27 T0287 99 :LHAIAEN 1lniA 19 :LNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=18735 # 1w79A.99.8 read from T0287.t04.many.frag # found chain 1w79A in template set T0287 99 :LHAIAENPN 1w79A 9 :IDAILEDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18736 # 3nul.100.49 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 3nul 51 :KKDFEEP T0287 108 :F 3nul 59 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=18738 # 1n5uA.100.261 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 100 :HAIAENPNF 1n5uA 262 :KYICENQDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18739 # 1g5aA.100.83 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. T0287 100 :HAIAE 1g5aA 84 :IAREN T0287 106 :PNF 1g5aA 90 :PDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=18741 # 1y1pA.100.115 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 100 :HAIAENPNF 1y1pA 117 :RAAAATPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18742 # 1q92A.100.61 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 100 :HAIAENPNF 1q92A 93 :ISIWESKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18743 # 2ffsA.100.29 read from T0287.t04.many.frag # found chain 2ffsA in template set T0287 100 :HAIAENPNF 2ffsA 30 :VCRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18744 # 1gvjA.100.80 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIA 1gvjA 376 :GKRK T0287 105 :NPNF 1gvjA 381 :KPKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=18746 # 1f74A.100.151 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 100 :HAIAENPNF 1f74A 152 :GELYKNPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18747 # 1colA.100.63 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 102 :IAENPNF 1colA 66 :ITANPAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=18748 # 1kpsB.100.143 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 100 :HAIAENPNF 1kpsB 562 :LAFVTKPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18749 # 1yw4A.100.236 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 100 :HAIAENPNF 1yw4A 237 :RGLLSNPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18750 # 1zz1A.100.84 read from T0287.t04.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 T0287 100 :HAIAENP 1zz1A 85 :KRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=18751 # 1k5nA.100.168 read from T0287.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1k5nA 169 :RRYLEN T0287 107 :NF 1k5nA 176 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18753 # 1z5zA.100.156 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 100 :HAIAENPNF 1z5zA 792 :SKFQNNPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18754 # 1g8mA.100.133 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 100 :HAIAENPNF 1g8mA 134 :RAAAKNHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18755 # 1fi4A.100.365 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N105 (1fi4A)S351 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAE 1fi4A 346 :NHQFE T0287 106 :PNF 1fi4A 352 :SNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18757 # 1t1vA.100.50 read from T0287.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIA 1t1vA 51 :RTLA T0287 105 :NPNF 1t1vA 56 :NPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18759 # 1h80A.100.46 read from T0287.t04.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. T0287 100 :HAIAENPN 1h80A 74 :NAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=18760 # 2bptA.100.685 read from T0287.t04.many.frag # found chain 2bptA in template set T0287 100 :HAIAENPNF 2bptA 686 :AQMISNPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18761 # 1lc5A.100.281 read from T0287.t04.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N105 (1lc5A)L287 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1lc5A 282 :QALCQ T0287 106 :PNF 1lc5A 288 :PLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18763 # 1a4iA.100.85 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 100 :HAIAENPNF 1a4iA 86 :TSLNEDSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18764 # 1q6uA.100.107 read from T0287.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N105 (1q6uA)E113 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1q6uA 108 :EKFAK T0287 106 :PNF 1q6uA 114 :KGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18766 # 1l0bA.100.23 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1l0bA 1612 :QKFAEK T0287 108 :F 1l0bA 1620 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=18768 # 1zl0A.100.72 read from T0287.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)A103 (1zl0A)F74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1zl0A)D78 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAI 1zl0A 71 :HNA T0287 104 :ENP 1zl0A 75 :DMP T0287 108 :F 1zl0A 79 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=18771 # 1vjhA.100.21 read from T0287.t04.many.frag # found chain 1vjhA in template set T0287 100 :HAIAENPNF 1vjhA 22 :SAFVEDTNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18772 # 1z7xW.100.418 read from T0287.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1z7xW 418 :VESVR T0287 106 :PNF 1z7xW 424 :PGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=18774 # 1ye8A.100.122 read from T0287.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1ye8A 123 :RQIMH T0287 106 :PNF 1ye8A 129 :PNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18776 # 1l9vA.100.114 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N105 (1l9vA)N120 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1l9vA 115 :VIRKE T0287 106 :PNF 1l9vA 121 :PQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18778 # 1lu4A.100.47 read from T0287.t04.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N107 (1lu4A)A1055 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1lu4A 1048 :QVAAANP T0287 108 :F 1lu4A 1056 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=18780 # 1sra.100.44 read from T0287.t04.many.frag # found chain 1sra in template set T0287 100 :HAIAENPNF 1sra 180 :KKIHENEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18781 # 3nul.101.50 read from T0287.t04.many.frag # found chain 3nul in training set T0287 101 :AIAENPNFL 3nul 52 :KDFEEPGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18782 # 1g5aA.101.84 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 101 :AIAENPNFL 1g5aA 85 :ARENNPDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18783 # 1n5uA.101.262 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 101 :AIAENPNFL 1n5uA 263 :YICENQDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18784 # 2ffsA.101.30 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 T0287 101 :AIAENPNF 2ffsA 31 :CRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=18785 # 1gvjA.101.81 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)A103 (1gvjA)K379 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AI 1gvjA 377 :KR T0287 105 :NPNF 1gvjA 381 :KPKM Number of specific fragments extracted= 2 number of extra gaps= 2 total=18787 # 1q92A.101.62 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 101 :AIAENPNFL 1q92A 94 :SIWESKNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18788 # 1yw4A.101.237 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 101 :AIAENPNFL 1yw4A 238 :GLLSNPQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18789 # 1fi4A.101.366 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 101 :AIAENPNFL 1fi4A 347 :HQFESSNFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18790 # 1kpsB.101.144 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 101 :AIAENPNFL 1kpsB 563 :AFVTKPNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18791 # 1colA.101.64 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 102 :IAENPNFL 1colA 66 :ITANPAMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18792 # 1f74A.101.152 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 101 :AIAENPNFL 1f74A 153 :ELYKNPKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18793 # 1y1pA.101.116 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 101 :AIAENPNFL 1y1pA 118 :AAAATPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18794 # 1w23A.101.313 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1w23A 314 :AKAKE T0287 107 :NFL 1w23A 320 :GFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18796 # 2bptA.101.686 read from T0287.t04.many.frag # found chain 2bptA in template set Warning: unaligning (T0287)N105 (2bptA)N691 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 2bptA 687 :QMIS T0287 106 :PNFL 2bptA 692 :PNAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18798 # 1k5nA.101.169 read from T0287.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1k5nA 170 :RYLEN T0287 107 :NFL 1k5nA 176 :KET Number of specific fragments extracted= 2 number of extra gaps= 1 total=18800 # 1lu4A.101.48 read from T0287.t04.many.frag # found chain 1lu4A in training set T0287 101 :AIAENPNFL 1lu4A 1049 :VAAANPAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18801 # 1g8mA.101.134 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 101 :AIAENPNFL 1g8mA 135 :AAAKNHARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18802 # 1z5zA.101.157 read from T0287.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0287)N105 (1z5zA)N797 because D (zeta) conformation "forbidden" or filtered. T0287 101 :AIAE 1z5zA 793 :KFQN T0287 106 :PNFL 1z5zA 798 :PSVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18804 # 1l0bA.101.24 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l0bA 1613 :KFAEK T0287 107 :NFL 1l0bA 1619 :RLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18806 # 1z7xW.101.419 read from T0287.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1z7xW 419 :ESVR T0287 106 :PNFL 1z7xW 424 :PGCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18808 # 1sra.101.45 read from T0287.t04.many.frag # found chain 1sra in template set T0287 101 :AIAENPNFL 1sra 181 :KIHENEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18809 # 1l9vA.101.115 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 101 :AIAENPNFL 1l9vA 116 :IRKENPQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18810 # 1vjhA.101.22 read from T0287.t04.many.frag # found chain 1vjhA in template set T0287 101 :AIAENPNFL 1vjhA 23 :AFVEDTNRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18811 # 1h80A.101.47 read from T0287.t04.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)N105 (1h80A)K79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAE 1h80A 75 :AISR T0287 106 :PNF 1h80A 80 :PNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=18813 # 1l8aA.101.418 read from T0287.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l8aA 419 :HIRDR T0287 107 :NFL 1l8aA 425 :NVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18815 # 1zl0A.101.73 read from T0287.t04.many.frag # found chain 1zl0A in template set T0287 101 :AIAENPNFL 1zl0A 72 :NAFDMPDIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18816 # 1uehA.101.159 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAEN 1uehA 160 :EKVQQ T0287 107 :NFL 1uehA 166 :NLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18818 # 1ye8A.101.123 read from T0287.t04.many.frag # found chain 1ye8A in training set T0287 101 :AIAENPNFL 1ye8A 124 :QIMHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18819 # 1sbxA.101.54 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 101 :AIAEN 1sbxA 141 :AVCDE T0287 108 :FL 1sbxA 148 :IY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18821 # 1zz1A.101.85 read from T0287.t04.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 Warning: unaligning (T0287)L109 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENP 1zz1A 86 :RVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=18822 # 3nul.102.51 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAENP 3nul 53 :DFEEP T0287 108 :FLF 3nul 59 :FLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18824 # 1g5aA.102.85 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 102 :IAENPNFLF 1g5aA 86 :RENNPDWIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18825 # 1n5uA.102.263 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 102 :IAENPNFLF 1n5uA 264 :ICENQDSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18826 # 1gvjA.102.82 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0287 102 :IA 1gvjA 378 :RK T0287 105 :NPNFLF 1gvjA 381 :KPKMNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18828 # 2ffsA.102.31 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 102 :IAENPNF 2ffsA 32 :RAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=18829 # 1colA.102.65 read from T0287.t04.many.frag # found chain 1colA in template set T0287 102 :IAENPNFLF 1colA 66 :ITANPAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18830 # 1q92A.102.63 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 102 :IAENPNFLF 1q92A 95 :IWESKNFFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18831 # 1yw4A.102.238 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 102 :IAENPNFLF 1yw4A 239 :LLSNPQANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18832 # 1w23A.102.314 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1w23A 315 :KAKE T0287 108 :FLF 1w23A 321 :FVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18834 # 1lu4A.102.49 read from T0287.t04.many.frag # found chain 1lu4A in training set T0287 102 :IAENPNFLF 1lu4A 1050 :AAANPAVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18835 # 1f74A.102.153 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 102 :IAENPNFLF 1f74A 154 :LYKNPKVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18836 # 1kpsB.102.145 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 102 :IAENPNFLF 1kpsB 564 :FVTKPNGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18837 # 1z5zA.102.158 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 102 :IAENPNFLF 1z5zA 794 :FQNNPSVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18838 # 1fi4A.102.367 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 102 :IAENPNFLF 1fi4A 348 :QFESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18839 # 2bptA.102.687 read from T0287.t04.many.frag # found chain 2bptA in template set T0287 102 :IAENPNFLF 2bptA 688 :MISNPNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18840 # 1y1pA.102.117 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 102 :IAENPNFLF 1y1pA 119 :AAATPSVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18841 # 1l9vA.102.116 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 102 :IAENPNFLF 1l9vA 117 :RKENPQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18842 # 1z7xW.102.420 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 102 :IAENPNFLF 1z7xW 420 :SVRQPGCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18843 # 1l0bA.102.25 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1l0bA 1614 :FAEK T0287 108 :FLF 1l0bA 1620 :LAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18845 # 1zl0A.102.74 read from T0287.t04.many.frag # found chain 1zl0A in template set T0287 102 :IAENPNFLF 1zl0A 73 :AFDMPDITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18846 # 1sbxA.102.55 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1sbxA 142 :VCDE T0287 107 :NFLF 1sbxA 147 :HIYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=18848 # 1sra.102.46 read from T0287.t04.many.frag # found chain 1sra in template set Warning: unaligning (T0287)N105 (1sra)N185 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1sra 182 :IHE T0287 106 :PNFLF 1sra 186 :EKRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18850 # 1yt8A.102.452 read from T0287.t04.many.frag # found chain 1yt8A in template set T0287 102 :IAENPNFLF 1yt8A 453 :LSGKPVFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18851 # 1h80A.102.48 read from T0287.t04.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. T0287 102 :IAENPN 1h80A 76 :ISRKPN T0287 109 :LF 1h80A 83 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18853 # 1musA.102.62 read from T0287.t04.many.frag # found chain 1musA in template set T0287 102 :IAENPNFLF 1musA 63 :FIRNPNVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18854 # 1ye8A.102.124 read from T0287.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N107 (1ye8A)N130 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 T0287 102 :IAENP 1ye8A 125 :IMHDP T0287 108 :FL 1ye8A 131 :VN Number of specific fragments extracted= 2 number of extra gaps= 2 total=18856 # 1rp0A.102.57 read from T0287.t04.many.frag # found chain 1rp0A in training set T0287 102 :IAENPNFLF 1rp0A 58 :ISKNPNVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18857 # 1uehA.102.160 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1uehA 161 :KVQQ T0287 107 :NFLF 1uehA 166 :NLQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18859 # 1l8aA.102.419 read from T0287.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1l8aA 420 :IRDR T0287 107 :NFLF 1l8aA 425 :NVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18861 # 1a4iA.102.87 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 102 :IAENPNFLF 1a4iA 88 :LNEDSTVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18862 # 3nul.103.52 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AENP 3nul 54 :FEEP T0287 108 :FLFS 3nul 59 :FLAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18864 # 1g5aA.103.86 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 103 :AENPNFLFS 1g5aA 87 :ENNPDWILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18865 # 1gvjA.103.83 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)A103 (1gvjA)K379 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNF 1gvjA 380 :NKPKM T0287 110 :FS 1gvjA 386 :YE Number of specific fragments extracted= 2 number of extra gaps= 2 total=18867 # 1n5uA.103.264 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 103 :AENPNFLFS 1n5uA 265 :CENQDSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18868 # 2ffsA.103.32 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 103 :AENPNF 2ffsA 33 :AREPQY T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=18870 # 1yw4A.103.239 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N107 (1yw4A)Q244 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1yw4A 240 :LSNP T0287 108 :FLFS 1yw4A 245 :ANVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18872 # 1kpsB.103.146 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 103 :AENPNFLFS 1kpsB 565 :VTKPNGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18873 # 1z5zA.103.159 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 103 :AENPNFLFS 1z5zA 795 :QNNPSVKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18874 # 1lu4A.103.50 read from T0287.t04.many.frag # found chain 1lu4A in training set T0287 103 :AENPNFLFS 1lu4A 1051 :AANPAVTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18875 # 1colA.103.66 read from T0287.t04.many.frag # found chain 1colA in template set T0287 103 :AENPNFLFS 1colA 67 :TANPAMKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18876 # 1q92A.103.64 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AENP 1q92A 96 :WESK T0287 108 :FLFS 1q92A 101 :FFFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18878 # 1f74A.103.154 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 103 :AENPNFLFS 1f74A 155 :YKNPKVLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18879 # 1yt8A.103.453 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1yt8A 454 :S T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18881 # 1w23A.103.315 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AEN 1w23A 316 :AKE T0287 107 :NFL 1w23A 320 :GFV T0287 111 :S 1w23A 324 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=18884 # 1l9vA.103.117 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 103 :AENPNFLFS 1l9vA 118 :KENPQDILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18885 # 1z7xW.103.421 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 103 :AENPNFLFS 1z7xW 421 :VRQPGCLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18886 # 2bptA.103.688 read from T0287.t04.many.frag # found chain 2bptA in template set Warning: unaligning (T0287)N105 (2bptA)N691 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AE 2bptA 689 :IS T0287 106 :PNFLFS 2bptA 692 :PNARRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18888 # 1fi4A.103.368 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :AENPNFLF 1fi4A 349 :FESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18889 # 2jdxA.103.201 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AEN 2jdxA 239 :AAQ T0287 107 :NFLFS 2jdxA 243 :KFVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18891 # 1sbxA.103.56 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1sbxA 143 :CDE T0287 108 :FLFS 1sbxA 148 :IYCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18893 # 1l0bA.103.26 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1l0bA 1615 :AEK T0287 107 :NFLFS 1l0bA 1619 :RLALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18895 # 1eokA.103.18 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)E104 (1eokA)R20 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :A 1eokA 19 :G T0287 105 :NPNFLFS 1eokA 21 :NPTFKLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18897 # 1ye8A.103.125 read from T0287.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1ye8A)V134 T0287 103 :AE 1ye8A 126 :MH T0287 106 :PNFL 1ye8A 129 :PNVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=18899 # 1musA.103.63 read from T0287.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0287)N105 (1musA)N66 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AE 1musA 64 :IR T0287 106 :PNFLFS 1musA 67 :PNVSAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18901 # 1rlzA.103.213 read from T0287.t04.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1rlzA 214 :I T0287 105 :NPNFLFS 1rlzA 216 :NPESVYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18903 # 1oygA.103.31 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 103 :AENPNFLFS 1oygA 58 :QKNEKYQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18904 # 2f2gA.103.95 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 2f2gA 96 :GSK T0287 107 :NFLFS 2f2gA 100 :DVDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18906 # 1kcfA.103.198 read from T0287.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0287)P106 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1kcfA 199 :IDG T0287 107 :NFLFS 1kcfA 203 :KILFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18908 # 1rp0A.103.58 read from T0287.t04.many.frag # found chain 1rp0A in training set T0287 103 :AENPNFLFS 1rp0A 59 :SKNPNVQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18909 # 1x9iA.103.8 read from T0287.t04.many.frag # found chain 1x9iA in training set T0287 103 :AENPNFLFS 1x9iA 9 :LNWENYILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18910 # 1gvjA.104.84 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FSK 1gvjA 386 :YEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=18912 # 3nul.104.53 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENP 3nul 55 :EEP T0287 108 :FLFSK 3nul 59 :FLAPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18914 # 1yw4A.104.240 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N105 (1yw4A)N242 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 104 :E 1yw4A 241 :S T0287 106 :PNFLFS 1yw4A 243 :PQANVP Number of specific fragments extracted= 2 number of extra gaps= 2 total=18916 # 1n5uA.104.265 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 104 :ENPNFLFSK 1n5uA 266 :ENQDSISSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18917 # 1kpsB.104.147 read from T0287.t04.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)K112 (1kpsB)T574 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1kpsB 566 :TKPNGALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18918 # 1g5aA.104.87 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 104 :ENPNFLFSK 1g5aA 88 :NNPDWILSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18919 # 2ffsA.104.33 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)S111 (2ffsA)V41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENPNF 2ffsA 34 :REPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=18920 # 1z5zA.104.160 read from T0287.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0287)N105 (1z5zA)N797 because D (zeta) conformation "forbidden" or filtered. T0287 104 :E 1z5zA 796 :N T0287 106 :PNFLFSK 1z5zA 798 :PSVKFIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18922 # 1eokA.104.19 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 104 :ENPNFLFSK 1eokA 20 :RNPTFKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18923 # 1x9iA.104.9 read from T0287.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1x9iA 10 :NWENYILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=18924 # 1z7xW.104.422 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 104 :ENPNFLFSK 1z7xW 422 :RQPGCLLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18925 # 2jdxA.104.202 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 2jdxA 240 :AQ T0287 107 :NFLFSK 2jdxA 243 :KFVTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18927 # 1oygA.104.32 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)N105 (1oygA)N60 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :E 1oygA 59 :K T0287 106 :PNFLFSK 1oygA 61 :EKYQVPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18929 # 1q92A.104.65 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)K112 (1q92A)L105 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1q92A 97 :ESKNFFFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18930 # 1yt8A.104.454 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD Number of specific fragments extracted= 1 number of extra gaps= 2 total=18931 # 1sbxA.104.57 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1sbxA 144 :DE T0287 108 :FLFSK 1sbxA 148 :IYCSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18933 # 1lu4A.104.51 read from T0287.t04.many.frag # found chain 1lu4A in training set T0287 104 :ENPNFLFSK 1lu4A 1052 :ANPAVTFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18934 # 1colA.104.67 read from T0287.t04.many.frag # found chain 1colA in template set T0287 104 :ENPNFLFSK 1colA 68 :ANPAMKINK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18935 # 1ox0A.104.105 read from T0287.t04.many.frag # found chain 1ox0A in training set T0287 104 :ENPNFLFSK 1ox0A 87 :NHANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18936 # 1rlzA.104.214 read from T0287.t04.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 105 :NPNFLFSK 1rlzA 216 :NPESVYYW Number of specific fragments extracted= 1 number of extra gaps= 1 total=18937 # 1l9vA.104.118 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 104 :ENPNFLFSK 1l9vA 119 :ENPQDILFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18938 # 2f2gA.104.96 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 2f2gA 97 :SK T0287 107 :NFLFSK 2f2gA 100 :DVDFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=18940 # 1fi4A.104.369 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLF 1fi4A 350 :ESSNFTA T0287 112 :K 1fi4A 358 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=18942 # 1tjvA.104.400 read from T0287.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 1tjvA 401 :ET T0287 107 :NFLFSK 1tjvA 404 :GITINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18944 # 1qlmA.104.269 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 1qlmA 270 :EE T0287 107 :NFLFSK 1qlmA 273 :DYDFYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18946 # 1w23A.104.279 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)N282 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G283 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 280 :ES T0287 108 :FLFSK 1w23A 284 :FYVGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=18948 # 1w23A.104.316 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 317 :KE T0287 108 :FL 1w23A 321 :FV T0287 111 :SK 1w23A 324 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=18951 # 1pea.104.301 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1pea 302 :AA T0287 107 :NFLFSK 1pea 305 :NWRVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=18953 # 1musA.104.64 read from T0287.t04.many.frag # found chain 1musA in template set T0287 104 :ENPNFLFSK 1musA 65 :RNPNVSAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18954 # 1rz4A.104.55 read from T0287.t04.many.frag # found chain 1rz4A in template set T0287 104 :ENPNFLFSK 1rz4A 56 :FNPAFFQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18955 # 1yw4A.105.241 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N107 (1yw4A)Q244 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NP 1yw4A 242 :NP T0287 108 :FLFSKF 1yw4A 245 :ANVPDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18957 # 1gvjA.105.85 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FSKF 1gvjA 386 :YEKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18959 # 1oygA.105.33 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 105 :NPNFLFSKF 1oygA 60 :NEKYQVPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18960 # 1n5uA.105.266 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F108 (1n5uA)S270 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1n5uA)S272 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPN 1n5uA 267 :NQD T0287 109 :L 1n5uA 271 :I T0287 111 :SKF 1n5uA 273 :SKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=18963 # 1ox0A.105.106 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 T0287 105 :NPNFLFSK 1ox0A 88 :HANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18964 # 1sbxA.105.58 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1sbxA 145 :E T0287 107 :NFLFSKF 1sbxA 147 :HIYCSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=18966 # 1eokA.105.20 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 105 :NPNFLFSKF 1eokA 21 :NPTFKLKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18967 # 1x9iA.105.10 read from T0287.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)N107 (1x9iA)N13 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NP 1x9iA 11 :WE T0287 108 :FLFS 1x9iA 14 :YILR T0287 113 :F 1x9iA 19 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=18970 # 2ffsA.105.34 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NPNF 2ffsA 35 :EPQY T0287 111 :S 2ffsA 41 :V T0287 113 :F 2ffsA 43 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=18973 # 1qlmA.105.270 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1qlmA 271 :E T0287 107 :N 1qlmA 273 :D T0287 109 :LFSKF 1qlmA 275 :DFYKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=18976 # 2jdxA.105.203 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 2jdxA 241 :Q T0287 107 :NFLFSKF 2jdxA 243 :KFVTTEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18978 # 1tjvA.105.401 read from T0287.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1tjvA 402 :T T0287 108 :FLFSKF 1tjvA 405 :ITINKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18980 # 2f2gA.105.97 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 105 :N 2f2gA 98 :K T0287 108 :FLFSKF 2f2gA 101 :VDFSTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18982 # 1w23A.105.317 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1w23A 318 :E T0287 108 :FLFSKF 1w23A 321 :FVGLNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18984 # 1pea.105.302 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1pea)N305 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :N 1pea 303 :A T0287 108 :FLFSKF 1pea 306 :WRVEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18986 # 1g5aA.105.88 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1g5aA 90 :PDWILSNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18987 # 1fi4A.105.370 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLF 1fi4A 351 :SSNFTA T0287 112 :KF 1fi4A 358 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18989 # 1zvdA.105.240 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 105 :NPNFLFSKF 1zvdA 609 :IPQHLLKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18990 # 3nul.105.54 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (3nul)G64 because S (epsilon) conformation "forbidden" or filtered. T0287 105 :NP 3nul 56 :EP T0287 108 :FLFSK 3nul 59 :FLAPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=18992 # 1kpsB.105.148 read from T0287.t04.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)K112 (1kpsB)T574 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1kpsB 567 :KPNGALE T0287 113 :F 1kpsB 575 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=18994 # 1rz4A.105.56 read from T0287.t04.many.frag # found chain 1rz4A in template set T0287 105 :NPNFLFSKF 1rz4A 57 :NPAFFQTTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18995 # 1yt8A.105.455 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD T0287 113 :F 1yt8A 464 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=18997 # 1uehA.105.163 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1uehA 164 :Q T0287 107 :NFLFSKF 1uehA 166 :NLQPDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18999 # 2b59B.105.152 read from T0287.t04.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NP 2b59B 153 :HF T0287 108 :FLFSKF 2b59B 156 :ATSSDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19001 # 1u8xX.105.455 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 T0287 105 :N 1u8xX 433 :A T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19004 # 1z7xW.105.423 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 105 :NPNFLFSKF 1z7xW 423 :QPGCLLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19005 # 1colA.105.68 read from T0287.t04.many.frag # found chain 1colA in template set T0287 105 :NPNFLFSKF 1colA 69 :NPAMKINKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19006 # 1s4nA.105.203 read from T0287.t04.many.frag # found chain 1s4nA in template set Warning: unaligning (T0287)N105 (1s4nA)N298 because D (zeta) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1s4nA 299 :PEYLDENN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19007 # 1wteA.105.97 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1wteA)F106 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NP 1wteA 98 :NE T0287 108 :FLFSK 1wteA 101 :FIHPC Number of specific fragments extracted= 2 number of extra gaps= 2 total=19009 # 1oqjA.105.76 read from T0287.t04.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1oqjA 162 :S T0287 107 :NFLFSKF 1oqjA 164 :QIDFYQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=19011 # 1ox0A.106.107 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 106 :PNFLFSK 1ox0A 89 :ANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19012 # 1oygA.106.34 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)K112 (1oygA)E67 because P (beta_P) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1oygA 61 :EKYQVP T0287 113 :FD 1oygA 68 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19014 # 1yw4A.106.242 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1yw4A 243 :PQANVP T0287 113 :FD 1yw4A 250 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19016 # 1gvjA.106.86 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNF 1gvjA 382 :PKM T0287 110 :FSKFD 1gvjA 386 :YEKLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19018 # 1n5uA.106.267 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F113 (1n5uA)L275 because G (3-10) conformation "forbidden" or filtered. T0287 106 :PNFLFSK 1n5uA 268 :QDSISSK T0287 114 :D 1n5uA 276 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=19020 # 1zvdA.106.241 read from T0287.t04.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)K112 (1zvdA)T616 because G (3-10) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1zvdA 610 :PQHLLK T0287 113 :FD 1zvdA 617 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19022 # 1eokA.106.21 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 106 :PNFLFSKFD 1eokA 22 :PTFKLKDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19023 # 1sbxA.106.59 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1sbxA 148 :IYCSRCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=19024 # 1x9iA.106.11 read from T0287.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLFS 1x9iA 12 :ENYILR T0287 113 :FD 1x9iA 19 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19026 # 1pea.106.303 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1pea 305 :NWRVEDVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=19027 # 2f2gA.106.98 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2f2gA)V107 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 2f2gA 100 :DVDFSTV Number of specific fragments extracted= 1 number of extra gaps= 2 total=19028 # 1qlmA.106.271 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 107 :N 1qlmA 273 :D T0287 109 :LFSKFD 1qlmA 275 :DFYKID Number of specific fragments extracted= 2 number of extra gaps= 2 total=19030 # 1tjvA.106.402 read from T0287.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1tjvA 404 :GITINKLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19031 # 2jdxA.106.204 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 2jdxA 244 :FVTTEF Number of specific fragments extracted= 1 number of extra gaps= 2 total=19032 # 1odmA.106.167 read from T0287.t04.many.frag # found chain 1odmA in training set T0287 106 :PNFLFSKFD 1odmA 168 :ENFFARHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19033 # 1uehA.106.164 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1uehA 166 :NLQPDQID Number of specific fragments extracted= 1 number of extra gaps= 1 total=19034 # 1t4bA.106.210 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)P106 (1t4bA)G211 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1t4bA 212 :ELPVDNFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19035 # 2ffsA.106.35 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :PNF 2ffsA 36 :PQY T0287 111 :S 2ffsA 41 :V T0287 113 :FD 2ffsA 43 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=19038 # 1yt8A.106.456 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)N107 (1yt8A)V458 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1yt8A)D462 because P (beta_P) conformation "forbidden" or filtered. T0287 106 :P 1yt8A 457 :P T0287 108 :FLF 1yt8A 459 :FLL T0287 112 :KFD 1yt8A 463 :GGT Number of specific fragments extracted= 3 number of extra gaps= 2 total=19041 # 1pkhA.106.14 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)P106 (1pkhA)K15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FD 1pkhA 22 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=19043 # 2b59B.106.153 read from T0287.t04.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :P 2b59B 154 :F T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19045 # 1fi4A.106.371 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLF 1fi4A 352 :SNFTA T0287 112 :KFD 1fi4A 358 :ELD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19047 # 1u8xX.106.456 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 3 total=19049 # 1w23A.106.318 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1w23A 320 :GFVGLNGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=19050 # 1u8xX.106.316 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 106 :P 1u8xX 294 :E T0287 109 :L 1u8xX 297 :I T0287 113 :FD 1u8xX 301 :CD Number of specific fragments extracted= 3 number of extra gaps= 2 total=19053 # 1up8A.106.170 read from T0287.t04.many.frag # found chain 1up8A in template set Warning: unaligning (T0287)K112 (1up8A)E176 because G (3-10) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1up8A 170 :REIEFS T0287 113 :FD 1up8A 177 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19055 # 1qw9A.106.11 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 106 :PNFLF 1qw9A 12 :KDFKI T0287 113 :FD 1qw9A 19 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=19057 # 1wteA.106.98 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. T0287 106 :P 1wteA 99 :E T0287 108 :FLFSKFD 1wteA 101 :FIHPCFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19059 # 1s4nA.106.204 read from T0287.t04.many.frag # found chain 1s4nA in template set T0287 106 :PNFLFSKFD 1s4nA 299 :PEYLDENNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19060 # 1oqjA.106.77 read from T0287.t04.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :FD 1oqjA 170 :HD Number of specific fragments extracted= 2 number of extra gaps= 2 total=19062 # 1oygA.107.35 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 107 :NFLFSKFDR 1oygA 62 :KYQVPEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19063 # 1ox0A.107.108 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 107 :NFLFSK 1ox0A 90 :NLDVEA T0287 115 :R 1ox0A 98 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=19065 # 1zvdA.107.242 read from T0287.t04.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)F110 (1zvdA)L614 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFL 1zvdA 611 :QHL T0287 111 :SKFDR 1zvdA 615 :KTFDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19067 # 1yw4A.107.243 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 107 :NFLFSKFDR 1yw4A 244 :QANVPDLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19068 # 1pkhA.107.15 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FDR 1pkhA 22 :FNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19070 # 1eokA.107.22 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 107 :NFLFSKFDR 1eokA 23 :TFKLKDIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19071 # 1tjvA.107.403 read from T0287.t04.many.frag # found chain 1tjvA in template set T0287 107 :NFLFSKFDR 1tjvA 404 :GITINKLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19072 # 1qlmA.107.272 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKFDR 1qlmA 275 :DFYKIDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19073 # 1t4bA.107.211 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 107 :NFLFSKFDR 1t4bA 212 :ELPVDNFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19074 # 1sbxA.107.60 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1sbxA 148 :IYCSRCTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19075 # 1pea.107.304 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)N107 (1pea)N305 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1pea 306 :WRVEDVQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19076 # 1qw9A.107.12 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 107 :NFLF 1qw9A 13 :DFKI T0287 113 :FDR 1qw9A 19 :IDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19078 # 1n5uA.107.268 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 107 :NFLFSKFDR 1n5uA 269 :DSISSKLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19079 # 1yt8A.107.457 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 107 :NFLFS 1yt8A 458 :VFLLD T0287 114 :DR 1yt8A 465 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19081 # 1y93A.107.41 read from T0287.t04.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)K112 (1y93A)K151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFS 1y93A 146 :PLKFS T0287 113 :FD 1y93A 152 :IN Number of specific fragments extracted= 2 number of extra gaps= 2 total=19083 # 1up8A.107.171 read from T0287.t04.many.frag # found chain 1up8A in template set T0287 107 :NFLFSKFDR 1up8A 171 :EIEFSEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19084 # 2f2gA.107.99 read from T0287.t04.many.frag # found chain 2f2gA in template set T0287 107 :NFLFSKFDR 2f2gA 100 :DVDFSTVVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19085 # 1x9iA.107.12 read from T0287.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFS 1x9iA 13 :NYILR T0287 113 :FDR 1x9iA 19 :VDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19087 # 1uehA.107.165 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1uehA 167 :LQPDQIDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19088 # 1gvjA.107.87 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NF 1gvjA 383 :KM T0287 110 :FSKFDR 1gvjA 386 :YEKLSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19090 # 2b59B.107.154 read from T0287.t04.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19091 # 1w4sA.107.113 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)S111 (1w4sA)E1047 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLF 1w4sA 1043 :KLCP T0287 113 :FDR 1w4sA 1049 :FRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19093 # 1odmA.107.168 read from T0287.t04.many.frag # found chain 1odmA in training set T0287 107 :NFLFSKFDR 1odmA 169 :NFFARHFKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19094 # 1u8xX.107.317 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 109 :L 1u8xX 297 :I T0287 113 :FDR 1u8xX 301 :CDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=19096 # 1srvA.107.114 read from T0287.t04.many.frag # found chain 1srvA in template set T0287 107 :NFLFSKFDR 1srvA 306 :GFKLENATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19097 # 2jdxA.107.205 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 2jdxA 243 :KFVTTEF T0287 115 :R 2jdxA 251 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=19099 # 1e4cP.107.43 read from T0287.t04.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)N107 (1e4cP)G44 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1e4cP 45 :IPYEKLTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19100 # 1oqjA.107.78 read from T0287.t04.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1oqjA)K172 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :FD 1oqjA 170 :HD Number of specific fragments extracted= 2 number of extra gaps= 2 total=19102 # 1rqpA.107.171 read from T0287.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)N107 (1rqpA)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1rqpA 173 :FPLSEV T0287 115 :R 1rqpA 180 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=19104 # 1w23A.107.319 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1w23A 321 :FVGLNGHR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19105 # 1ox0A.108.109 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)K112 (1ox0A)A95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 108 :FLFS 1ox0A 91 :LDVE T0287 115 :RS 1ox0A 98 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19107 # 1oygA.108.36 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)K112 (1oygA)E67 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFS 1oygA 63 :YQVP T0287 113 :FDRS 1oygA 68 :FDSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19109 # 1zvdA.108.243 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 108 :FLFSKFDRS 1zvdA 612 :HLLKTFDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19110 # 1qw9A.108.13 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 108 :FLF 1qw9A 14 :FKI T0287 113 :FDRS 1qw9A 19 :IDKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19112 # 1yw4A.108.244 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFS 1yw4A 245 :ANVP T0287 113 :FDRS 1yw4A 250 :LDED Number of specific fragments extracted= 2 number of extra gaps= 1 total=19114 # 1pkhA.108.16 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 108 :FLFS 1pkhA 17 :IIIK T0287 113 :FDRS 1pkhA 22 :FNKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19116 # 1tjvA.108.404 read from T0287.t04.many.frag # found chain 1tjvA in template set T0287 108 :FLFSKFDRS 1tjvA 405 :ITINKLSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19117 # 1t4bA.108.212 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 108 :FLFSKFDRS 1t4bA 213 :LPVDNFGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19118 # 1eokA.108.23 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1eokA 24 :FKLKDIPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19119 # 1y93A.108.42 read from T0287.t04.many.frag # found chain 1y93A in template set T0287 108 :FLFSKFDRS 1y93A 147 :LKFSKINTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19120 # 1qlmA.108.273 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKFDRS 1qlmA 275 :DFYKIDPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19121 # 1sbxA.108.61 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)K112 (1sbxA)R152 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1sbxA)T154 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFS 1sbxA 148 :IYCS T0287 113 :F 1sbxA 153 :C T0287 115 :RS 1sbxA 155 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=19124 # 1w4sA.108.114 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFS 1w4sA 1044 :LCPE T0287 113 :FDRS 1w4sA 1049 :FRDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19126 # 1up8A.108.172 read from T0287.t04.many.frag # found chain 1up8A in template set T0287 108 :FLFSKFDRS 1up8A 172 :IEFSEFDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19127 # 1srvA.108.115 read from T0287.t04.many.frag # found chain 1srvA in template set T0287 108 :FLFSKFDRS 1srvA 307 :FKLENATLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19128 # 1pe9A.108.286 read from T0287.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)S111 (1pe9A)A290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 108 :FLF 1pe9A 287 :FTI T0287 113 :FDRS 1pe9A 292 :LSAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19130 # 1pea.108.305 read from T0287.t04.many.frag # found chain 1pea in template set T0287 108 :FLFSKFDRS 1pea 306 :WRVEDVQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19131 # 1e4cP.108.44 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 108 :FLFSKFDRS 1e4cP 45 :IPYEKLTES Number of specific fragments extracted= 1 number of extra gaps= 0 total=19132 # 1uehA.108.166 read from T0287.t04.many.frag # found chain 1uehA in training set T0287 108 :FLFSKFDRS 1uehA 167 :LQPDQIDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19133 # 1rqpA.108.172 read from T0287.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)K112 (1rqpA)E177 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFS 1rqpA 173 :FPLS T0287 113 :FDRS 1rqpA 178 :VGRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19135 # 1yt8A.108.458 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFSK 1yt8A 459 :FLLDG T0287 114 :DRS 1yt8A 465 :TSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19137 # 2be1A.108.223 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 2be1A 334 :LLASDLDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19138 # 1n5uA.108.269 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F110 (1n5uA)S272 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FL 1n5uA 270 :SI T0287 111 :SKFDRS 1n5uA 273 :SKLKEC Number of specific fragments extracted= 2 number of extra gaps= 1 total=19140 # 1tt8A.108.103 read from T0287.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1tt8A 104 :LALQKL T0287 115 :RS 1tt8A 111 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19142 # 1odmA.108.169 read from T0287.t04.many.frag # found chain 1odmA in training set T0287 108 :FLFSKFDRS 1odmA 170 :FFARHFKPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19143 # 1bkrA.108.21 read from T0287.t04.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)L109 (1bkrA)N23 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1bkrA)F27 because G (3-10) conformation "forbidden" or filtered. T0287 108 :F 1bkrA 22 :V T0287 110 :FS 1bkrA 24 :IH T0287 114 :DRS 1bkrA 28 :TTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=19146 # 2b59B.108.155 read from T0287.t04.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19147 # 1hs6A.108.481 read from T0287.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1hs6A 481 :DDLNSF T0287 115 :RS 1hs6A 488 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19149 # 1my7A.108.23 read from T0287.t04.many.frag # found chain 1my7A in training set T0287 108 :FLFSKFDRS 1my7A 214 :LLCDKVQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19150 # 1u8xX.108.458 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 T0287 108 :FL 1u8xX 436 :DF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19152 # 1ox0A.109.110 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 109 :LFSK 1ox0A 92 :DVEA T0287 115 :RSI 1ox0A 98 :RDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19154 # 1oygA.109.37 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)K112 (1oygA)E67 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFS 1oygA 64 :QVP T0287 113 :FDRSI 1oygA 68 :FDSST Number of specific fragments extracted= 2 number of extra gaps= 1 total=19156 # 1zvdA.109.244 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 109 :LFSKFDRSI 1zvdA 613 :LLKTFDEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19157 # 1qw9A.109.14 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 109 :LF 1qw9A 15 :KI T0287 113 :FDRSI 1qw9A 19 :IDKRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19159 # 1yw4A.109.245 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 109 :LFSKFDRSI 1yw4A 246 :NVPDLDEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19160 # 1pkhA.109.17 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFS 1pkhA 18 :IIK T0287 113 :F 1pkhA 22 :F T0287 115 :RSI 1pkhA 24 :KDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=19163 # 1tjvA.109.405 read from T0287.t04.many.frag # found chain 1tjvA in template set T0287 109 :LFSKFDRSI 1tjvA 406 :TINKLSLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=19164 # 1t4bA.109.213 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 109 :LFSKF 1t4bA 214 :PVDNF T0287 115 :RSI 1t4bA 220 :VPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19166 # 1srvA.109.116 read from T0287.t04.many.frag # found chain 1srvA in template set T0287 109 :LFSKFDRSI 1srvA 308 :KLENATLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19167 # 1qlmA.109.274 read from T0287.t04.many.frag # found chain 1qlmA in template set T0287 109 :LFSKFDRSI 1qlmA 275 :DFYKIDPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19168 # 1eokA.109.24 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 109 :LFSKFDR 1eokA 25 :KLKDIPD T0287 117 :I 1eokA 33 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19170 # 1e4cP.109.45 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 109 :LFSKFDRSI 1e4cP 46 :PYEKLTESH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19171 # 1h2wA.109.316 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 109 :LFSKFDRSI 1h2wA 317 :DFTDPEESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19172 # 1sbxA.109.62 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)K112 (1sbxA)R152 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFS 1sbxA 149 :YCS T0287 113 :FDRSI 1sbxA 153 :CTADQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19174 # 1w4sA.109.115 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 109 :LFS 1w4sA 1045 :CPE T0287 113 :FDRSI 1w4sA 1049 :FRDED Number of specific fragments extracted= 2 number of extra gaps= 1 total=19176 # 1y93A.109.43 read from T0287.t04.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKFD 1y93A 148 :KFSKIN T0287 116 :SI 1y93A 155 :GM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19178 # 1tt8A.109.104 read from T0287.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)S116 (1tt8A)T112 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFSKFDR 1tt8A 105 :ALQKLGK T0287 117 :I 1tt8A 113 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=19180 # 1pe9A.109.287 read from T0287.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)S111 (1pe9A)A290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 109 :LF 1pe9A 288 :TI T0287 113 :FDRSI 1pe9A 292 :LSASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19182 # 1uehA.109.167 read from T0287.t04.many.frag # found chain 1uehA in training set T0287 109 :LFSKFDRSI 1uehA 168 :QPDQIDEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19183 # 1rqpA.109.173 read from T0287.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 1rqpA 174 :PLSEV T0287 115 :RSI 1rqpA 180 :RPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19185 # 1kg0C.109.54 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L109 (1kg0C)Y140 because Y (epsilon') conformation "forbidden" or filtered. T0287 110 :FSKFDRSI 1kg0C 141 :FYGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19186 # 1g9gA.109.98 read from T0287.t04.many.frag # found chain 1g9gA in template set T0287 109 :LFSKFDRSI 1g9gA 99 :SMSRYDANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19187 # 1up8A.109.173 read from T0287.t04.many.frag # found chain 1up8A in template set Warning: unaligning (T0287)K112 (1up8A)E176 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LFS 1up8A 173 :EFS T0287 113 :FDRSI 1up8A 177 :FDSPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19189 # 1hs6A.109.482 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 109 :LFSKFDRSI 1hs6A 482 :DLNSFNATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19190 # 1pea.109.306 read from T0287.t04.many.frag # found chain 1pea in template set T0287 109 :LFSKFDRSI 1pea 307 :RVEDVQRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19191 # 1ut7A.109.52 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D50 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RSI 1ut7A 56 :PWV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19193 # 1qxmA.109.188 read from T0287.t04.many.frag # found chain 1qxmA in training set T0287 109 :LFSKFDRSI 1qxmA 175 :LWQWFDSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19194 # 2a3nA.109.260 read from T0287.t04.many.frag # found chain 2a3nA in template set T0287 109 :LFSKFDRSI 2a3nA 249 :ALELLEKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19195 # 1bkrA.109.22 read from T0287.t04.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFS 1bkrA 23 :NIH T0287 113 :FDRSI 1bkrA 27 :FTTSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=19197 # 1u8xX.109.459 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 Warning: unaligning (T0287)I117 because last residue in template chain is (1u8xX)P445 T0287 109 :L 1u8xX 437 :F T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19199 # 1ox0A.110.111 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 110 :FSK 1ox0A 93 :VEA T0287 115 :RSIL 1ox0A 98 :RDRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19201 # 1oygA.110.38 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 110 :FSKFDRSIL 1oygA 65 :VPEFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19202 # 1qw9A.110.15 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 110 :F 1qw9A 16 :I T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19204 # 1zvdA.110.245 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 110 :FSKFDRSIL 1zvdA 614 :LKTFDEKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19205 # 1yw4A.110.246 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FS 1yw4A 247 :VP T0287 113 :FDRSIL 1yw4A 250 :LDEDKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19207 # 1t4bA.110.214 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F110 (1t4bA)V215 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1t4bA 216 :DNFGVPLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19208 # 1srvA.110.117 read from T0287.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. T0287 110 :FSKF 1srvA 309 :LENA T0287 115 :RSIL 1srvA 314 :LSML Number of specific fragments extracted= 2 number of extra gaps= 1 total=19210 # 1h2wA.110.317 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 110 :FSKFDRSIL 1h2wA 318 :FTDPEESKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19211 # 1pkhA.110.18 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 110 :FS 1pkhA 19 :IK T0287 113 :FDRSIL 1pkhA 22 :FNKDFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19213 # 1tt8A.110.105 read from T0287.t04.many.frag # found chain 1tt8A in training set T0287 110 :FSKFDRSIL 1tt8A 106 :LQKLGKTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19214 # 1qlmA.110.275 read from T0287.t04.many.frag # found chain 1qlmA in template set T0287 110 :FSKFDRSIL 1qlmA 276 :FYKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19215 # 1tjvA.110.406 read from T0287.t04.many.frag # found chain 1tjvA in template set T0287 110 :FSKFDRSIL 1tjvA 407 :INKLSLEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19216 # 1w4sA.110.116 read from T0287.t04.many.frag # found chain 1w4sA in template set T0287 110 :FSKFDRSIL 1w4sA 1046 :PENFRDEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19217 # 1e4cP.110.46 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 110 :FSKFDRSIL 1e4cP 47 :YEKLTESHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19218 # 1kg0C.110.55 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)I117 (1kg0C)I148 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 T0287 110 :FSKFDRS 1kg0C 141 :FYGPTPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19219 # 1eokA.110.25 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)D114 (1eokA)P30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 110 :FSKF 1eokA 26 :LKDI T0287 115 :R 1eokA 31 :D T0287 117 :IL 1eokA 33 :VD Number of specific fragments extracted= 3 number of extra gaps= 2 total=19222 # 1xruA.110.41 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. T0287 110 :FSKF 1xruA 39 :YSHI T0287 115 :RSIL 1xruA 44 :RIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19224 # 1pea.110.307 read from T0287.t04.many.frag # found chain 1pea in template set T0287 110 :FSKFDRSIL 1pea 308 :VEDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19225 # 1qxmA.110.189 read from T0287.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 110 :FSKF 1qxmA 176 :WQWF T0287 115 :RSIL 1qxmA 181 :SSRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19227 # 1l8bA.110.114 read from T0287.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)S111 (1l8bA)D143 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :F 1l8bA 142 :F T0287 112 :KFDRSIL 1l8bA 144 :DYSDDVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=19229 # 1rqpA.110.174 read from T0287.t04.many.frag # found chain 1rqpA in training set T0287 110 :FSKFDRSIL 1rqpA 175 :LSEVGRPLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19230 # 1ut7A.110.53 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)S111 (1ut7A)Y52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 110 :F 1ut7A 51 :L T0287 112 :K 1ut7A 53 :K T0287 115 :RSIL 1ut7A 56 :PWVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19233 # 1g4mA.110.306 read from T0287.t04.many.frag # found chain 1g4mA in template set T0287 110 :FSKFDRSIL 1g4mA 307 :REGANREIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19234 # 1vefA.110.361 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FSKF 1vefA 362 :ALQA T0287 115 :RSIL 1vefA 367 :PTVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19236 # 1sbxA.110.63 read from T0287.t04.many.frag # found chain 1sbxA in training set T0287 110 :FSKFDRSIL 1sbxA 150 :CSRCTADQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19237 # 1hs6A.110.483 read from T0287.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)K492 T0287 110 :FSKF 1hs6A 483 :LNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 2 total=19239 # 1uehA.110.168 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)S111 (1uehA)D170 because G (3-10) conformation "forbidden" or filtered. T0287 110 :F 1uehA 169 :P T0287 112 :KFDRSIL 1uehA 171 :QIDEEML Number of specific fragments extracted= 2 number of extra gaps= 1 total=19241 # 1w23A.110.322 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :S 1w23A 324 :L T0287 113 :FDRSIL 1w23A 326 :GHRSVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19243 # 1g9gA.110.99 read from T0287.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)D114 (1g9gA)D104 because D (zeta) conformation "forbidden" or filtered. T0287 110 :FSKF 1g9gA 100 :MSRY T0287 115 :RSIL 1g9gA 105 :ANKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19245 # 1nkr.110.66 read from T0287.t04.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)I117 (1nkr)L73 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1nkr 66 :ISRMTQD T0287 118 :L 1nkr 74 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=19247 # 1ox0A.111.112 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 111 :SK 1ox0A 94 :EA T0287 115 :RSILG 1ox0A 98 :RDRFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19249 # 1qw9A.111.16 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19250 # 1oygA.111.39 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)S111 (1oygA)P66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 T0287 112 :KFDRSIL 1oygA 67 :EFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 2 total=19251 # 1yw4A.111.247 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1yw4A 248 :PDLDEDKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19252 # 1zvdA.111.246 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 111 :SKFDRSILG 1zvdA 615 :KTFDEKELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19253 # 1h2wA.111.318 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 111 :SKFDRSILG 1h2wA 319 :TDPEESKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19254 # 1t4bA.111.215 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKF 1t4bA 216 :DNF T0287 115 :RSILG 1t4bA 220 :VPLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19256 # 1srvA.111.118 read from T0287.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)I117 (1srvA)M316 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDRS 1srvA 310 :ENATLS T0287 118 :LG 1srvA 317 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19258 # 1tt8A.111.106 read from T0287.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKF 1tt8A 107 :QKL T0287 115 :RSILG 1tt8A 111 :KTPLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19260 # 1xruA.111.42 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKF 1xruA 40 :SHI T0287 115 :RSILG 1xruA 44 :RIIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19262 # 1g4mA.111.307 read from T0287.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 111 :S 1g4mA 308 :E T0287 113 :FDRSILG 1g4mA 310 :ANREILG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19264 # 1w4sA.111.117 read from T0287.t04.many.frag # found chain 1w4sA in template set T0287 111 :SKFDRSILG 1w4sA 1047 :ENFRDEDVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19265 # 1kg0C.111.56 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 111 :SKFDRSI 1kg0C 142 :YGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19266 # 1vefA.111.362 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)K112 (1vefA)Q364 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :S 1vefA 363 :L T0287 113 :FDRSIL 1vefA 365 :AGPTVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=19268 # 1l8bA.111.115 read from T0287.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)F113 (1l8bA)Y145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1l8bA)D148 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SK 1l8bA 143 :DD T0287 114 :DR 1l8bA 146 :SD T0287 117 :ILG 1l8bA 149 :VCG Number of specific fragments extracted= 3 number of extra gaps= 2 total=19271 # 1qxmA.111.190 read from T0287.t04.many.frag # found chain 1qxmA in training set T0287 111 :SKFDRSILG 1qxmA 177 :QWFDSSRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19272 # 1ut7A.111.54 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 111 :SK 1ut7A 52 :YK T0287 115 :RSILG 1ut7A 56 :PWVLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19274 # 1tjvA.111.407 read from T0287.t04.many.frag # found chain 1tjvA in template set T0287 111 :SKFDRSILG 1tjvA 408 :NKLSLEDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19275 # 1w23A.111.323 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKFDRSI 1w23A 324 :LNGHRSV T0287 119 :G 1w23A 332 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=19277 # 1pkhA.111.19 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 111 :S 1pkhA 20 :K T0287 113 :FDRSILG 1pkhA 22 :FNKDFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19279 # 1qlmA.111.276 read from T0287.t04.many.frag # found chain 1qlmA in template set T0287 111 :SKFDRSILG 1qlmA 277 :YKIDPGVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19280 # 1e4cP.111.47 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 111 :SKFDRSILG 1e4cP 48 :EKLTESHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19281 # 1nkr.111.67 read from T0287.t04.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)G119 (1nkr)G75 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1nkr 67 :SRMTQDLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19282 # 2a3nA.111.262 read from T0287.t04.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKF 2a3nA 251 :ELL T0287 115 :RSILG 2a3nA 255 :KDVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19284 # 1g9gA.111.100 read from T0287.t04.many.frag # found chain 1g9gA in template set T0287 111 :SKFDRSILG 1g9gA 101 :SRYDANKPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19285 # 1eokA.111.26 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)D114 (1eokA)P30 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SKF 1eokA 27 :KDI T0287 115 :RSILG 1eokA 31 :DKVDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19287 # 1ogoX.111.139 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDR 1ogoX 140 :SQSDD T0287 117 :IL 1ogoX 146 :GI Number of specific fragments extracted= 2 number of extra gaps= 2 total=19289 # 1ig0A.111.178 read from T0287.t04.many.frag # found chain 1ig0A in training set T0287 111 :SKFDRSILG 1ig0A 179 :SKVTPISLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19290 # 1pe9A.111.289 read from T0287.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pe9A)S293 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :S 1pe9A 290 :A T0287 113 :F 1pe9A 292 :L T0287 115 :RSILG 1pe9A 294 :ASKAC Number of specific fragments extracted= 3 number of extra gaps= 2 total=19293 # 1pea.111.308 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)G119 (1pea)D317 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1pea 309 :EDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19294 # 1ox0A.112.113 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)I117 (1ox0A)R100 because G (3-10) conformation "forbidden" or filtered. T0287 112 :K 1ox0A 95 :A T0287 115 :RS 1ox0A 98 :RD T0287 118 :LGI 1ox0A 101 :FGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=19297 # 1qw9A.112.17 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 2 total=19298 # 1yw4A.112.248 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1yw4A 249 :DLDEDKL T0287 120 :I 1yw4A 257 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19300 # 1h2wA.112.319 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1h2wA 320 :DPEESKW T0287 120 :I 1h2wA 328 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19302 # 1zvdA.112.247 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 112 :KFDRSILGI 1zvdA 616 :TFDEKELEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19303 # 1xruA.112.43 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 1xruA 41 :HI T0287 116 :SILGI 1xruA 45 :IIVGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19305 # 1oygA.112.40 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)N75 T0287 112 :KFDRSIL 1oygA 67 :EFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19306 # 1t4bA.112.216 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1t4bA)P221 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KF 1t4bA 217 :NF T0287 115 :R 1t4bA 220 :V T0287 117 :ILGI 1t4bA 222 :LAGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=19309 # 1g4mA.112.308 read from T0287.t04.many.frag # found chain 1g4mA in template set T0287 112 :KFDRSILGI 1g4mA 309 :GANREILGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19310 # 1vefA.112.363 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 1vefA 364 :QA T0287 115 :RSIL 1vefA 367 :PTVI T0287 120 :I 1vefA 372 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=19313 # 1srvA.112.119 read from T0287.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 1srvA 311 :NA T0287 115 :RSILGI 1srvA 314 :LSMLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19315 # 1tt8A.112.107 read from T0287.t04.many.frag # found chain 1tt8A in training set T0287 112 :KFDRSILGI 1tt8A 108 :KLGKTPLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19316 # 1l8bA.112.116 read from T0287.t04.many.frag # found chain 1l8bA in training set T0287 112 :KFDRSILGI 1l8bA 144 :DYSDDVCGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19317 # 3cla.112.132 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)K112 (3cla)V139 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDRSILGI 3cla 140 :TPENHLNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19318 # 1qxmA.112.191 read from T0287.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 1qxmA 178 :WF T0287 115 :RSILGI 1qxmA 181 :SSRQKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=19320 # 1chd.112.123 read from T0287.t04.many.frag # found chain 1chd in training set T0287 112 :KFDRSILGI 1chd 270 :HAGRNAVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19321 # 1ogoX.112.140 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 112 :KFDRSILGI 1ogoX 141 :QSDDGGIVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19322 # 1kg0C.112.57 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 112 :KFDRSI 1kg0C 143 :GPTPDI T0287 120 :I 1kg0C 151 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19324 # 1w4sA.112.118 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w4sA)Y1055 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1w4sA 1049 :FRDEDV T0287 120 :I 1w4sA 1056 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=19326 # 2fckA.112.128 read from T0287.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)D114 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 112 :KF 2fckA 126 :RL T0287 115 :RSIL 2fckA 129 :LTRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19328 # 1w23A.112.324 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w23A)G332 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KF 1w23A 325 :NG T0287 115 :RSI 1w23A 328 :RSV T0287 120 :I 1w23A 333 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=19331 # 2a3nA.112.263 read from T0287.t04.many.frag # found chain 2a3nA in template set T0287 112 :KFDRSILGI 2a3nA 252 :LLEKDVPLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19332 # 1qs1A.112.198 read from T0287.t04.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)G119 (1qs1A)K206 because D (zeta) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1qs1A 199 :SKERVIL T0287 120 :I 1qs1A 207 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19334 # 2be1A.112.227 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 112 :KFDR 2be1A 338 :DLDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19335 # 1wl8A.112.69 read from T0287.t04.many.frag # found chain 1wl8A in template set T0287 112 :KFDRSILGI 1wl8A 70 :EFNVPILGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19336 # 1ut7A.112.55 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 112 :K 1ut7A 53 :K T0287 115 :RSILGI 1ut7A 56 :PWVLPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19338 # 1nkr.112.68 read from T0287.t04.many.frag # found chain 1nkr in training set T0287 112 :KFDRSILGI 1nkr 68 :RMTQDLAGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19339 # 1wd3A.112.26 read from T0287.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0287)L118 (1wd3A)Y50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1wd3A)Q51 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSI 1wd3A 44 :SFSGAL T0287 120 :I 1wd3A 52 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19341 # 1as4B.112.7 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)S116 (1as4B)P369 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KFDR 1as4B 365 :RFNR T0287 117 :ILGI 1as4B 370 :FLMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19343 # 2bw3A.112.110 read from T0287.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0287)D114 (2bw3A)K188 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 2bw3A 186 :YI T0287 115 :RSILGI 2bw3A 189 :RNFLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19345 # 1ox0A.113.114 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)I117 (1ox0A)R100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1ox0A)G102 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RS 1ox0A 98 :RD T0287 118 :L 1ox0A 101 :F T0287 120 :IF 1ox0A 103 :VI Number of specific fragments extracted= 3 number of extra gaps= 3 total=19348 # 1qw9A.113.18 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19349 # 1yw4A.113.249 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1yw4A 250 :LDEDKL T0287 120 :IF 1yw4A 257 :LF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19351 # 1h2wA.113.320 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 113 :FDRSILGIF 1h2wA 321 :PEESKWKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19352 # 3cla.113.133 read from T0287.t04.many.frag # found chain 3cla in training set T0287 113 :FDRSILGIF 3cla 140 :TPENHLNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19353 # 1seiA.113.53 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1seiA)G57 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :F 1seiA 54 :N T0287 115 :R 1seiA 56 :Q T0287 117 :ILGIF 1seiA 58 :ILRIF Number of specific fragments extracted= 3 number of extra gaps= 2 total=19356 # 1ogoX.113.141 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :FDR 1ogoX 142 :SDD T0287 117 :ILGIF 1ogoX 146 :GIVIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19358 # 1chd.113.124 read from T0287.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0287)F113 (1chd)A271 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1chd)R273 because G (3-10) conformation "forbidden" or filtered. T0287 114 :D 1chd 272 :G T0287 116 :SILGIF 1chd 274 :NAVGVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=19360 # 1g4mA.113.309 read from T0287.t04.many.frag # found chain 1g4mA in template set T0287 113 :FDRSILGIF 1g4mA 310 :ANREILGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=19361 # 1vefA.113.364 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :F 1vefA 365 :A T0287 115 :RSILGIF 1vefA 367 :PTVIRFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19363 # 1xruA.113.44 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :F 1xruA 42 :I T0287 115 :RSILGIF 1xruA 44 :RIIVGGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19365 # 1qxmA.113.192 read from T0287.t04.many.frag # found chain 1qxmA in training set T0287 113 :FDRSILGIF 1qxmA 179 :FDSSRQKWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19366 # 1l8bA.113.117 read from T0287.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)F113 (1l8bA)Y145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSIL 1l8bA 146 :SDDVC T0287 120 :IF 1l8bA 152 :AV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19368 # 1srvA.113.120 read from T0287.t04.many.frag # found chain 1srvA in template set T0287 113 :FDRSILGIF 1srvA 312 :ATLSMLGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19369 # 1t4bA.113.217 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :F 1t4bA 218 :F T0287 115 :RSILGIF 1t4bA 220 :VPLAGSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19371 # 1crzA.113.225 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1crzA 232 :PDGSKL T0287 120 :IF 1crzA 239 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19373 # 2fckA.113.129 read from T0287.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)D114 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2fckA)T130 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 113 :F 2fckA 127 :L T0287 115 :R 2fckA 129 :L T0287 117 :IL 2fckA 131 :RL T0287 121 :F 2fckA 135 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=19377 # 1kg0C.113.58 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :FDRSI 1kg0C 144 :PTPDI T0287 120 :IF 1kg0C 151 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19379 # 1tt8A.113.108 read from T0287.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1tt8A)T112 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :F 1tt8A 109 :L T0287 115 :R 1tt8A 111 :K T0287 117 :ILGIF 1tt8A 113 :PLGRY Number of specific fragments extracted= 3 number of extra gaps= 2 total=19382 # 2a3nA.113.264 read from T0287.t04.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2a3nA)L259 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :F 2a3nA 253 :L T0287 115 :RSIL 2a3nA 255 :KDVP T0287 120 :IF 2a3nA 260 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19385 # 1zvdA.113.248 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 113 :FDRSILGIF 1zvdA 617 :FDEKELELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19386 # 1as4B.113.8 read from T0287.t04.many.frag # found chain 1as4B in template set T0287 113 :FDRSILGIF 1as4B 366 :FNRPFLMII Number of specific fragments extracted= 1 number of extra gaps= 0 total=19387 # 1w23A.113.325 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w23A)G332 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :FDRSI 1w23A 326 :GHRSV T0287 120 :IF 1w23A 333 :CR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19389 # 2be1A.113.228 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 113 :FDR 2be1A 339 :LDF T0287 121 :F 2be1A 347 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19391 # 1u7iA.113.46 read from T0287.t04.many.frag # found chain 1u7iA in training set Warning: unaligning (T0287)D114 (1u7iA)E46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1u7iA)G47 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :F 1u7iA 45 :P T0287 116 :SILGIF 1u7iA 48 :SVLKAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19393 # 1qs1A.113.199 read from T0287.t04.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)G119 (1qs1A)K206 because D (zeta) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1qs1A 200 :KERVIL T0287 120 :IF 1qs1A 207 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19395 # 1n7zA.113.80 read from T0287.t04.many.frag # found chain 1n7zA in template set T0287 113 :FDRSILGIF 1n7zA 81 :VLPSMLDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19396 # 1w4sA.113.119 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)I117 (1w4sA)D1053 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w4sA)Y1055 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRS 1w4sA 1049 :FRDE T0287 118 :L 1w4sA 1054 :V T0287 120 :IF 1w4sA 1056 :VC Number of specific fragments extracted= 3 number of extra gaps= 2 total=19399 # 1lm8V.113.26 read from T0287.t04.many.frag # found chain 1lm8V in template set T0287 113 :FDRSILGIF 1lm8V 80 :SPRVVLPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19400 # 1w66A.113.127 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1w66A)V127 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 T0287 115 :RSILGIF 1w66A 128 :DGRSGVW Number of specific fragments extracted= 1 number of extra gaps= 1 total=19401 # 1h2wA.114.321 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)D114 (1h2wA)E322 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1h2wA 323 :ESKW T0287 120 :IFL 1h2wA 328 :VLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19403 # 1ox0A.114.115 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)G119 (1ox0A)G102 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1ox0A 98 :RDRF T0287 120 :IFL 1ox0A 103 :VIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19405 # 1qw9A.114.19 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 114 :DRSILG 1qw9A 20 :DKRIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=19407 # 1seiA.114.54 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1seiA 56 :QGILRIFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19408 # 1w66A.114.128 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)R115 (1w66A)D128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 117 :ILGIFL 1w66A 130 :RSGVWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19409 # 1ogoX.114.142 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :DR 1ogoX 143 :DD T0287 117 :ILGIFL 1ogoX 146 :GIVIRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19411 # 3cla.114.134 read from T0287.t04.many.frag # found chain 3cla in training set T0287 114 :DRSILGIFL 3cla 141 :PENHLNISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19412 # 1yw4A.114.250 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :DRSIL 1yw4A 251 :DEDKL T0287 120 :IFL 1yw4A 257 :LFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19414 # 1chd.114.125 read from T0287.t04.many.frag # found chain 1chd in training set T0287 114 :DRSILGIFL 1chd 272 :GRNAVGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19415 # 1crzA.114.226 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1crzA 233 :D T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19417 # 1g4mA.114.310 read from T0287.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)I117 (1g4mA)I314 because G (3-10) conformation "forbidden" or filtered. T0287 114 :DRS 1g4mA 311 :NRE T0287 118 :LGIFL 1g4mA 315 :LGIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19419 # 1l8bA.114.118 read from T0287.t04.many.frag # found chain 1l8bA in training set T0287 114 :DRSILGIFL 1l8bA 146 :SDDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19420 # 1t4bA.114.218 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F121 (1t4bA)L226 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1t4bA)I227 because D (zeta) conformation "forbidden" or filtered. T0287 114 :DRSILGI 1t4bA 219 :GVPLAGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19421 # 1xruA.114.45 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSIL 1xruA 43 :DRIIV T0287 120 :IFL 1xruA 49 :GIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19423 # 1vefA.114.365 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 1vefA 366 :GPTVI T0287 120 :IFL 1vefA 372 :FLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19425 # 1wurA.114.80 read from T0287.t04.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 114 :DRSI 1wurA 81 :EEVV T0287 119 :GIFL 1wurA 86 :GAVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19427 # 1qxmA.114.193 read from T0287.t04.many.frag # found chain 1qxmA in training set T0287 114 :DRSILGIFL 1qxmA 180 :DSSRQKWII Number of specific fragments extracted= 1 number of extra gaps= 0 total=19428 # 2be1A.114.129 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)R115 (2be1A)G241 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2be1A)S245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 T0287 114 :D 2be1A 240 :N T0287 116 :SIL 2be1A 242 :EII T0287 120 :IF 2be1A 246 :AF Number of specific fragments extracted= 3 number of extra gaps= 3 total=19431 # 1kg0C.114.59 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 114 :DRSI 1kg0C 145 :TPDI T0287 120 :IFL 1kg0C 151 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19433 # 2asbA.114.22 read from T0287.t04.many.frag # found chain 2asbA in template set T0287 114 :DRSILGIFL 2asbA 127 :ARGLVVVRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19434 # 1u7iA.114.47 read from T0287.t04.many.frag # found chain 1u7iA in training set T0287 114 :DRSILGIFL 1u7iA 46 :EGSVLKALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19435 # 1as4B.114.9 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 1as4B 367 :NRPFL T0287 120 :IFL 1as4B 373 :IIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19437 # 1oewA.114.243 read from T0287.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)D114 (1oewA)S244 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSILGIF 1oewA 245 :SSVGGYV Number of specific fragments extracted= 1 number of extra gaps= 2 total=19438 # 1w23A.114.326 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1w23A)V330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 115 :RS 1w23A 328 :RS T0287 119 :GIFL 1w23A 332 :GCRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19440 # 2a3nA.114.265 read from T0287.t04.many.frag # found chain 2a3nA in template set T0287 114 :DRSILGIFL 2a3nA 254 :EKDVPLILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19441 # 2be1A.114.229 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 114 :DR 2be1A 340 :DF T0287 121 :FL 2be1A 347 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19443 # 1lm8V.114.27 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :DRSIL 1lm8V 81 :PRVVL T0287 120 :IFL 1lm8V 87 :VWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19445 # 2f6kA.114.114 read from T0287.t04.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)G119 (2f6kA)G120 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSIL 2f6kA 115 :QDGAL T0287 120 :IFL 2f6kA 121 :VTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19447 # 1my7A.114.29 read from T0287.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0287)D114 (1my7A)Q220 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1my7A 221 :KEDIEVYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19448 # 1n7zA.114.81 read from T0287.t04.many.frag # found chain 1n7zA in template set T0287 114 :DRSILGIFL 1n7zA 82 :LPSMLDAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19449 # 1h2wA.115.322 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)I117 (1h2wA)K325 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RS 1h2wA 323 :ES T0287 118 :L 1h2wA 326 :W T0287 120 :IFLP 1h2wA 328 :VLVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=19452 # 1w66A.115.129 read from T0287.t04.many.frag # found chain 1w66A in template set T0287 115 :RSILGIFLP 1w66A 128 :DGRSGVWLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19453 # 1qw9A.115.20 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 T0287 115 :RSILG 1qw9A 21 :KRIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=19455 # 1seiA.115.55 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1seiA 56 :QGIL T0287 120 :IFL 1seiA 61 :IFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19457 # 1ogoX.115.143 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1ogoX 144 :D T0287 117 :ILGIFLP 1ogoX 146 :GIVIRVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19459 # 3cla.115.135 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSIL 3cla 142 :ENHL T0287 120 :IFL 3cla 147 :ISA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19461 # 1t4bA.115.219 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)I120 (1t4bA)S225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F121 (1t4bA)L226 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1t4bA)I227 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSILG 1t4bA 220 :VPLAG T0287 123 :P 1t4bA 228 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=19463 # 1crzA.115.227 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 1 number of extra gaps= 2 total=19464 # 1ox0A.115.116 read from T0287.t04.many.frag # found chain 1ox0A in training set T0287 115 :RSILGIFLP 1ox0A 98 :RDRFGVIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19465 # 1oewA.115.244 read from T0287.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSILGIF 1oewA 245 :SSVGGYV T0287 123 :P 1oewA 253 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=19467 # 1wurA.115.81 read from T0287.t04.many.frag # found chain 1wurA in template set T0287 115 :RSILGIFLP 1wurA 82 :EVVGGAVFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19468 # 1chd.115.126 read from T0287.t04.many.frag # found chain 1chd in training set T0287 115 :RSILGIFLP 1chd 273 :RNAVGVILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19469 # 1t1uA.115.165 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)R115 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)R167 Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t1uA 170 :S T0287 120 :IFLP 1t1uA 172 :YRLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=19471 # 2be1A.115.130 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 T0287 115 :RSILGIF 2be1A 241 :GEIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19472 # 1g4mA.115.311 read from T0287.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)P123 (1g4mA)S320 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1g4mA 312 :REILGIIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19473 # 1yw4A.115.251 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 115 :RSILGIFLP 1yw4A 252 :EDKLPLFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19474 # 2asbA.115.23 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)S116 (2asbA)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2asbA)V132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 115 :R 2asbA 128 :R T0287 117 :IL 2asbA 130 :LV T0287 120 :IF 2asbA 133 :VR Number of specific fragments extracted= 3 number of extra gaps= 3 total=19477 # 1as4B.115.10 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1as4B 368 :RPFL T0287 120 :IFLP 1as4B 373 :IIVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19479 # 1jo0A.115.78 read from T0287.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)R115 (1jo0A)G80 because S (epsilon) conformation "forbidden" or filtered. T0287 116 :SILGIFLP 1jo0A 81 :HILVLYRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19480 # 1wdaA.115.582 read from T0287.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)R115 (1wdaA)F576 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1wdaA)S577 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1wdaA)E580 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 117 :IL 1wdaA 578 :KA T0287 120 :I 1wdaA 581 :A T0287 123 :P 1wdaA 584 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=19483 # 1l8bA.115.119 read from T0287.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)P123 (1l8bA)N155 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1l8bA 147 :DDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19484 # 1l1dA.115.43 read from T0287.t04.many.frag # found chain 1l1dA in template set Warning: unaligning (T0287)G119 (1l1dA)G418 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSIL 1l1dA 414 :LFKP T0287 120 :IFLP 1l1dA 419 :IYVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19486 # 1kaeA.115.123 read from T0287.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1kaeA 124 :VASV T0287 120 :IFLP 1kaeA 129 :LYIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19488 # 1xruA.115.46 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSIL 1xruA 44 :RIIV T0287 120 :IFLP 1xruA 49 :GIMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19490 # 1t61A.115.157 read from T0287.t04.many.frag # found chain 1t61A in training set T0287 115 :RSILGIFLP 1t61A 158 :LASPGSCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19491 # 2bzvA.115.66 read from T0287.t04.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)S116 (2bzvA)N282 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (2bzvA)A283 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :R 2bzvA 281 :D T0287 118 :LGIFLP 2bzvA 284 :LSLKLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19493 # 1lm8V.115.28 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)R115 (1lm8V)R82 because P (beta_P) conformation "forbidden" or filtered. T0287 116 :SILGIFLP 1lm8V 83 :VVLPVWLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19494 # 2be1A.115.230 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)R115 (2be1A)F341 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLP 2be1A 347 :VSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19495 # 1vefA.115.366 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1vefA 367 :PTVI T0287 120 :IFLP 1vefA 372 :FLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19497 # 2f6kA.115.115 read from T0287.t04.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. T0287 115 :R 2f6kA 116 :D T0287 117 :ILGIFLP 2f6kA 118 :ALGVTVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19499 # 1h2wA.116.323 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)I117 (1h2wA)K325 because G (3-10) conformation "forbidden" or filtered. T0287 116 :S 1h2wA 324 :S T0287 118 :LGIFLPF 1h2wA 326 :WKVLVPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19501 # 1w66A.116.130 read from T0287.t04.many.frag # found chain 1w66A in template set T0287 116 :SILGIFLPF 1w66A 129 :GRSGVWLPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19502 # 1seiA.116.56 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SILGIFL 1seiA 57 :GILRIFL T0287 124 :F 1seiA 65 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=19504 # 1qw9A.116.21 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 116 :SILG 1qw9A 22 :RIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=19506 # 1ogoX.116.144 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1ogoX 145 :GGI T0287 120 :IFLPF 1ogoX 149 :IRVPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19508 # 1t4bA.116.220 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)I120 (1t4bA)S225 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SILG 1t4bA 221 :PLAG T0287 121 :FLPF 1t4bA 226 :LIPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=19510 # 1wurA.116.82 read from T0287.t04.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 116 :SI 1wurA 83 :VV T0287 119 :GIFLPF 1wurA 86 :GAVFPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19512 # 3cla.116.136 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 116 :SILGIFL 3cla 143 :NHLNISA T0287 124 :F 3cla 151 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=19514 # 1t1uA.116.166 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t1uA 170 :S T0287 120 :IFLPF 1t1uA 172 :YRLPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19516 # 1crzA.116.228 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19517 # 1as4B.116.11 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1as4B 369 :PFL T0287 120 :IFLPF 1as4B 373 :IIVPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19519 # 1chd.116.127 read from T0287.t04.many.frag # found chain 1chd in training set T0287 116 :SILGIFLPF 1chd 274 :NAVGVILTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19520 # 1oewA.116.245 read from T0287.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SI 1oewA 246 :SV T0287 119 :GIF 1oewA 249 :GYV T0287 123 :PF 1oewA 253 :PC Number of specific fragments extracted= 3 number of extra gaps= 2 total=19523 # 1kaeA.116.124 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 116 :SILGIFLPF 1kaeA 125 :ASVGLYIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19524 # 2be1A.116.131 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 T0287 116 :SILGIF 2be1A 242 :EIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19525 # 1jo0A.116.79 read from T0287.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)S116 (1jo0A)H81 because G (3-10) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1jo0A 82 :ILVLYRPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19526 # 3eipA.116.52 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 116 :SILGIFLPF 3eipA 53 :EWVPLLQPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19527 # 1xruA.116.47 read from T0287.t04.many.frag # found chain 1xruA in template set T0287 116 :SILGIFLPF 1xruA 45 :IIVGGIMPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19528 # 1wdaA.116.583 read from T0287.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SILGI 1wdaA 577 :SKAEA T0287 123 :PF 1wdaA 584 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19530 # 1g9gA.116.105 read from T0287.t04.many.frag # found chain 1g9gA in template set T0287 116 :SILGIFLPF 1g9gA 106 :NKPATYAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19531 # 2be1A.116.231 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPF 2be1A 347 :VSPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=19532 # 1lm8V.116.29 read from T0287.t04.many.frag # found chain 1lm8V in template set T0287 116 :SILGIFLPF 1lm8V 83 :VVLPVWLNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19533 # 1t61A.116.158 read from T0287.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)S116 (1t61A)A159 because G (3-10) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1t61A 160 :SPGSCLEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19534 # 1cv8.116.134 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 116 :SILGIFL 1cv8 135 :EVIIIWN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19535 # 2bjqA.116.226 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)G230 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 2bjqA 227 :PVF T0287 120 :IF 2bjqA 231 :RA T0287 123 :PF 2bjqA 234 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=19538 # 2bzvA.116.67 read from T0287.t04.many.frag # found chain 2bzvA in template set T0287 116 :SILGIFLPF 2bzvA 282 :NALSLKLPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19539 # 1l1dA.116.44 read from T0287.t04.many.frag # found chain 1l1dA in template set T0287 116 :SILGIFLPF 1l1dA 415 :FKPGIYVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19540 # 1ewfA.116.200 read from T0287.t04.many.frag # found chain 1ewfA in training set T0287 116 :SILGIFLPF 1ewfA 201 :SVAGINYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19541 # 1repC.116.133 read from T0287.t04.many.frag # found chain 1repC in template set T0287 116 :SILGIFLPF 1repC 134 :YLIPFFIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19542 # 1t62A.116.68 read from T0287.t04.many.frag # found chain 1t62A in template set T0287 116 :SILGIFLPF 1t62A 1069 :GQYDIILDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19543 # 1h2wA.117.324 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)I117 (1h2wA)K325 because G (3-10) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1h2wA 326 :WKVLVPEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=19544 # 1w66A.117.131 read from T0287.t04.many.frag # found chain 1w66A in template set T0287 117 :ILGIFLPFF 1w66A 130 :RSGVWLPGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19545 # 1seiA.117.57 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :ILGIFL 1seiA 58 :ILRIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19547 # 1ogoX.117.145 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 117 :ILGIFLPFF 1ogoX 146 :GIVIRVPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19548 # 1qw9A.117.22 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 117 :IL 1qw9A 23 :IY T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=19551 # 1t1uA.117.167 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t1uA 170 :S T0287 120 :IFLPFF 1t1uA 172 :YRLPGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=19553 # 1as4B.117.12 read from T0287.t04.many.frag # found chain 1as4B in template set T0287 117 :ILGIFLPFF 1as4B 370 :FLMIIVPTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19554 # 3cla.117.137 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 117 :IL 3cla 144 :HL T0287 120 :IFL 3cla 147 :ISA T0287 124 :FF 3cla 151 :PW Number of specific fragments extracted= 3 number of extra gaps= 2 total=19557 # 1crzA.117.229 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 117 :ILGIFL 1crzA 236 :KLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19558 # 1kaeA.117.125 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 117 :ILGIFLPFF 1kaeA 126 :SVGLYIPGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19559 # 3eipA.117.53 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 117 :ILGIFLPFF 3eipA 54 :WVPLLQPYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19560 # 1jo0A.117.80 read from T0287.t04.many.frag # found chain 1jo0A in training set T0287 117 :ILGIFLPFF 1jo0A 82 :ILVLYRPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19561 # 1chd.117.128 read from T0287.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1chd 275 :AV T0287 120 :IFLPFF 1chd 278 :VILTGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19563 # 1t4bA.117.221 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 117 :ILGIFLPFF 1t4bA 222 :LAGSLIPWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19564 # 2be1A.117.132 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)G119 (2be1A)S245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 T0287 117 :IL 2be1A 243 :II T0287 120 :IF 2be1A 246 :AF Number of specific fragments extracted= 2 number of extra gaps= 2 total=19566 # 1cv8.117.135 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 117 :IL 1cv8 136 :VI T0287 120 :IFL 1cv8 139 :IWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=19569 # 1g9gA.117.106 read from T0287.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1g9gA 107 :KP T0287 120 :IFLPFF 1g9gA 110 :TYAPEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19571 # 1oewA.117.246 read from T0287.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :ILGIF 1oewA 247 :VGGYV T0287 123 :PFF 1oewA 253 :PCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19573 # 1f8eA.117.74 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :I 1f8eA 156 :R T0287 120 :IF 1f8eA 159 :IS T0287 123 :PFF 1f8eA 162 :PLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=19576 # 1t61A.117.159 read from T0287.t04.many.frag # found chain 1t61A in training set T0287 117 :ILGIFLPFF 1t61A 160 :SPGSCLEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19577 # 1wurA.117.83 read from T0287.t04.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 117 :I 1wurA 84 :V T0287 119 :GIFLPFF 1wurA 86 :GAVFPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19579 # 1wdaA.117.584 read from T0287.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 117 :ILGI 1wdaA 578 :KAEA T0287 123 :PFF 1wdaA 584 :PNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19581 # 2bjqA.117.227 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)G230 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 2bjqA 228 :VF T0287 120 :IF 2bjqA 231 :RA T0287 123 :PFF 2bjqA 234 :PDS Number of specific fragments extracted= 3 number of extra gaps= 2 total=19584 # 2be1A.117.232 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFF 2be1A 347 :VSPTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19585 # 1t62A.117.69 read from T0287.t04.many.frag # found chain 1t62A in template set T0287 117 :ILGIFLPFF 1t62A 1070 :QYDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19586 # 1xruA.117.48 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)L122 (1xruA)M51 because D (zeta) conformation "forbidden" or filtered. T0287 117 :ILGIF 1xruA 46 :IVGGI T0287 123 :PFF 1xruA 52 :PIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19588 # 1lm8V.117.30 read from T0287.t04.many.frag # found chain 1lm8V in template set T0287 117 :ILGIFLPFF 1lm8V 84 :VLPVWLNFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19589 # 2bzvA.117.68 read from T0287.t04.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)G119 (2bzvA)S285 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 2bzvA 283 :AL T0287 120 :IFLPFF 2bzvA 286 :LKLPFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19591 # 1f8eA.117.323 read from T0287.t04.many.frag # found chain 1f8eA in training set T0287 117 :ILGIFLPFF 1f8eA 406 :YSGSFMDYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19592 # 1ttwA.117.35 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 T0287 117 :ILGIFLP 1ttwA 36 :WVVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19593 # 1h2wA.118.325 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 118 :LGIFLPFFS 1h2wA 326 :WKVLVPEHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19594 # 1w66A.118.132 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1w66A 131 :SGVWLPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19595 # 1seiA.118.58 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 T0287 118 :LGIFL 1seiA 59 :LRIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19597 # 1ogoX.118.146 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 118 :LGIFLPFFS 1ogoX 147 :IVIRVPADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19598 # 3eipA.118.54 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 118 :LGIFLPFFS 3eipA 55 :VPLLQPYFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19599 # 1as4B.118.13 read from T0287.t04.many.frag # found chain 1as4B in template set T0287 118 :LGIFLPFFS 1as4B 371 :LMIIVPTDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19600 # 1crzA.118.230 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIFL 1crzA 237 :LAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19601 # 1t1uA.118.168 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 T0287 118 :LGIFLPFF 1t1uA 170 :SSYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=19602 # 1kaeA.118.126 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 118 :LGIFLPFFS 1kaeA 127 :VGLYIPGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19603 # 1cv8.118.136 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 118 :L 1cv8 137 :I T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 3 number of extra gaps= 2 total=19606 # 1jo0A.118.81 read from T0287.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1jo0A 83 :L T0287 120 :IFLPFFS 1jo0A 85 :LYRPSEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19608 # 1qw9A.118.23 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 Warning: unaligning (T0287)S126 (1qw9A)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :L 1qw9A 24 :Y T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=19611 # 1g9gA.118.107 read from T0287.t04.many.frag # found chain 1g9gA in template set T0287 118 :LGIFLPFFS 1g9gA 108 :PATYAPEFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19612 # 3cla.118.138 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 118 :LGIFL 3cla 145 :LNISA T0287 124 :FFS 3cla 151 :PWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19614 # 1chd.118.129 read from T0287.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0287)S126 (1chd)G284 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1chd 276 :VGVILTGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=19615 # 2be1A.118.133 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 Warning: unaligning (T0287)S126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2be1A)K252 T0287 118 :LGIF 2be1A 244 :ISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19616 # 1t4bA.118.222 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 118 :LGIFLPFFS 1t4bA 223 :AGSLIPWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=19617 # 1f8eA.118.75 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIF 1f8eA 158 :LIS T0287 123 :PFFS 1f8eA 162 :PLSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=19619 # 1t61A.118.160 read from T0287.t04.many.frag # found chain 1t61A in training set T0287 118 :LGIFLPFFS 1t61A 161 :PGSCLEEFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19620 # 1t62A.118.70 read from T0287.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)S126 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1t62A 1071 :YDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=19621 # 1y8xB.118.78 read from T0287.t04.many.frag # found chain 1y8xB in template set T0287 118 :LGIFLPFFS 1y8xB 423 :LAVADVTTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19622 # 1lm8V.118.31 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)S126 (1lm8V)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1lm8V 85 :LPVWLNFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19623 # 1flmA.118.15 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)G119 (1flmA)A17 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1flmA 16 :V T0287 120 :IFLPFFS 1flmA 18 :IATQGED Number of specific fragments extracted= 2 number of extra gaps= 1 total=19625 # 1sz2A.118.114 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 T0287 118 :LGIFLPFF 1sz2A 104 :VSMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=19626 # 1sqwA.118.85 read from T0287.t04.many.frag # found chain 1sqwA in template set T0287 118 :LGIFLPFFS 1sqwA 86 :LDYLAPYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19627 # 1ttwA.118.36 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 T0287 118 :LGIFLP 1ttwA 37 :VVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19628 # 2be1A.118.233 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFFS 2be1A 347 :VSPTFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19629 # 2fhpA.118.35 read from T0287.t04.many.frag # found chain 2fhpA in template set T0287 118 :LGIFLPFFS 2fhpA 33 :FNMIGPYFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19630 # 1repC.118.135 read from T0287.t04.many.frag # found chain 1repC in template set Warning: unaligning (T0287)F125 (1repC)Q143 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIFLPF 1repC 136 :IPFFIGL T0287 126 :S 1repC 144 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=19632 # 2asbA.118.26 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)G119 (2asbA)V132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 118 :L 2asbA 131 :V T0287 120 :IF 2asbA 133 :VR T0287 124 :FFS 2asbA 137 :TET Number of specific fragments extracted= 3 number of extra gaps= 2 total=19635 # 1h2wA.119.326 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1h2wA 328 :VLVPEHEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19636 # 1w66A.119.133 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1w66A 132 :GVWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=19638 # 1ogoX.119.147 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)L122 (1ogoX)V151 because D (zeta) conformation "forbidden" or filtered. T0287 119 :GIF 1ogoX 148 :VIR T0287 123 :PFFSK 1ogoX 152 :PADAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19640 # 1crzA.119.231 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)K127 (1crzA)S246 because E (beta_S) conformation "forbidden" or filtered. T0287 119 :GIFL 1crzA 238 :AFAL T0287 126 :S 1crzA 245 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=19642 # 3eipA.119.55 read from T0287.t04.many.frag # found chain 3eipA in training set Warning: unaligning (T0287)K127 (3eipA)H64 because P (beta_P) conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 3eipA 56 :PLLQPYFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19643 # 1seiA.119.59 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 3 total=19645 # 1as4B.119.14 read from T0287.t04.many.frag # found chain 1as4B in template set T0287 119 :GIFLPFFSK 1as4B 372 :MIIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19646 # 1t1uA.119.169 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 119 :GIFLPFF 1t1uA 171 :SYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=19647 # 1cv8.119.137 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FSK 1cv8 144 :DNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19649 # 1y8xB.119.79 read from T0287.t04.many.frag # found chain 1y8xB in template set T0287 119 :GIFLPFFSK 1y8xB 424 :AVADVTTPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19650 # 1kaeA.119.127 read from T0287.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1kaeA)A136 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFLPF 1kaeA 129 :LYIPG T0287 126 :S 1kaeA 135 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=19652 # 1flmA.119.16 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1flmA 17 :AIATQGED Number of specific fragments extracted= 1 number of extra gaps= 1 total=19653 # 1f8eA.119.76 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPF 1f8eA 159 :ISWPL T0287 126 :SK 1f8eA 165 :SP Number of specific fragments extracted= 2 number of extra gaps= 2 total=19655 # 1jo0A.119.82 read from T0287.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1jo0A 85 :LYRPSEEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19656 # 2asbA.119.27 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIF 2asbA 132 :VVR T0287 124 :F 2asbA 137 :T T0287 126 :SK 2asbA 139 :TK Number of specific fragments extracted= 3 number of extra gaps= 2 total=19659 # 1t62A.119.71 read from T0287.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)S126 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1t62A 1072 :DIILDGQ T0287 127 :K 1t62A 1080 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=19661 # 1sz2A.119.115 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 119 :GIFLPFF 1sz2A 105 :SMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=19662 # 1ttwA.119.37 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)G119 (1ttwA)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 2 total=19663 # 1lm8V.119.32 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)S126 (1lm8V)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1lm8V 86 :PVWLNFD T0287 127 :K 1lm8V 94 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=19665 # 1mpxA.119.461 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 119 :GIFLPFFSK 1mpxA 484 :TFVTEPLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19666 # 1hynP.119.230 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 119 :GIFLPFFSK 1hynP 231 :VGRADFLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19667 # 1g9gA.119.108 read from T0287.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1g9gA 110 :TYAPEFQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19668 # 1chd.119.130 read from T0287.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0287)S126 (1chd)G284 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1chd 277 :GVILTGM T0287 127 :K 1chd 285 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=19670 # 2bzvA.119.70 read from T0287.t04.many.frag # found chain 2bzvA in template set T0287 119 :GIFLPFFSK 2bzvA 285 :SLKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19671 # 1qg3A.119.19 read from T0287.t04.many.frag # found chain 1qg3A in template set T0287 119 :GIFLPFFSK 1qg3A 1145 :FNWLPPSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19672 # 1io0A.119.124 read from T0287.t04.many.frag # found chain 1io0A in training set Warning: unaligning (T0287)G119 (1io0A)E284 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1io0A)N289 because L (left) conformation "forbidden" or filtered. T0287 120 :IFLP 1io0A 285 :LRID T0287 125 :FSK 1io0A 290 :QSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=19674 # 3cla.119.139 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFL 3cla 147 :ISA T0287 124 :FFSK 3cla 151 :PWVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=19676 # 2bjqA.119.33 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)V34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :F 2bjqA 39 :K T0287 126 :SK 2bjqA 41 :GK Number of specific fragments extracted= 3 number of extra gaps= 3 total=19679 # 1oltA.119.55 read from T0287.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)K64 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)K64 T0287 119 :GIFLPFF 1oltA 56 :YVHIPFC Number of specific fragments extracted= 1 number of extra gaps= 1 total=19680 # 1t61A.119.161 read from T0287.t04.many.frag # found chain 1t61A in training set T0287 119 :GIFLPFFSK 1t61A 162 :GSCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19681 # 1h2wA.120.327 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)L122 (1h2wA)V330 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IF 1h2wA 328 :VL T0287 123 :PFFSKP 1h2wA 331 :PEHEKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19683 # 1ttwA.120.38 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19684 # 1crzA.120.232 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)S246 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 240 :AL T0287 128 :P 1crzA 247 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=19686 # 1flmA.120.17 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1flmA 18 :IATQGED T0287 128 :P 1flmA 26 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=19688 # 1mpxA.120.462 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 120 :IFLPFFSKP 1mpxA 485 :FVTEPLTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19689 # 1w66A.120.134 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1w66A 133 :VWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=19691 # 2asbA.120.28 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IF 2asbA 133 :VR T0287 124 :F 2asbA 137 :T T0287 126 :SKP 2asbA 139 :TKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=19694 # 3eipA.120.56 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 120 :IFLPFFSKP 3eipA 57 :LLQPYFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19695 # 1ogoX.120.148 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ogoX 149 :IRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19696 # 1t1uA.120.170 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 120 :IFLPFF 1t1uA 172 :YRLPGH T0287 128 :P 1t1uA 180 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=19698 # 1y8xB.120.80 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IF 1y8xB 425 :VA T0287 123 :PFFS 1y8xB 428 :VTTP T0287 128 :P 1y8xB 433 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=19701 # 1as4B.120.15 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1as4B 373 :IIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=19702 # 1sz2A.120.116 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 120 :IFLPFF 1sz2A 106 :MAIPML T0287 128 :P 1sz2A 114 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=19704 # 1seiA.120.60 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG T0287 128 :P 1seiA 69 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=19707 # 2bjqA.120.34 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :F 2bjqA 39 :K T0287 127 :KP 2bjqA 42 :KP Number of specific fragments extracted= 3 number of extra gaps= 2 total=19710 # 1hynP.120.231 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLP 1hynP 232 :GRAD T0287 125 :FS 1hynP 237 :LE T0287 128 :P 1hynP 240 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=19713 # 1f8eA.120.77 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IF 1f8eA 159 :IS T0287 123 :PFFSKP 1f8eA 162 :PLSSPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19715 # 1kaeA.120.128 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 120 :IFLPFFSKP 1kaeA 129 :LYIPGGSAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19716 # 1cv8.120.138 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FSK 1cv8 144 :DNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19718 # 1te0A.120.296 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 T0287 120 :IF 1te0A 333 :VV T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=19720 # 1t62A.120.72 read from T0287.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)S126 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1t62A 1073 :IILDGQ T0287 127 :KP 1t62A 1080 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19722 # 1r5mA.120.142 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1r5mA)F259 because G (3-10) conformation "forbidden" or filtered. T0287 120 :IFL 1r5mA 255 :NVL T0287 125 :FSKP 1r5mA 260 :HRAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19724 # 1ut7A.120.63 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ut7A 61 :NKALFGEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19725 # 1wnaA.120.47 read from T0287.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)F125 (1wnaA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1wnaA)K54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPF 1wnaA 48 :LLLHT T0287 127 :K 1wnaA 55 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=19727 # 1jo0A.120.83 read from T0287.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)K127 (1jo0A)A92 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1jo0A 85 :LYRPSEE T0287 128 :P 1jo0A 93 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=19729 # 1t61A.120.162 read from T0287.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)I120 (1t61A)S163 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1t61A)A171 because D (zeta) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1t61A 164 :CLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 2 total=19730 # 1l1dA.120.48 read from T0287.t04.many.frag # found chain 1l1dA in template set T0287 120 :IFLPFFSKP 1l1dA 419 :IYVDVVSGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19731 # 1lm8V.120.33 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)S126 (1lm8V)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1lm8V 87 :VWLNFD T0287 127 :KP 1lm8V 94 :EP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19733 # 2bzvA.120.71 read from T0287.t04.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)P128 (2bzvA)G294 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 2bzvA 286 :LKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=19734 # 3bamA.120.94 read from T0287.t04.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 3bamA 95 :VYK T0287 124 :FFSK 3bamA 99 :FIEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=19736 # 1ttwA.121.39 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 121 :FLP 1ttwA 40 :LAP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19738 # 1flmA.121.18 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1flmA 19 :ATQGED T0287 128 :PI 1flmA 26 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=19740 # 1h2wA.121.328 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 121 :FLPFFSKPI 1h2wA 329 :LVPEHEKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19741 # 2bjqA.121.35 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 121 :FL 2bjqA 36 :LW T0287 124 :FFS 2bjqA 39 :KFG T0287 128 :PI 2bjqA 43 :PI Number of specific fragments extracted= 3 number of extra gaps= 2 total=19744 # 1hynP.121.232 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1hynP 233 :RADFLE T0287 128 :PI 1hynP 240 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19746 # 1mpxA.121.463 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 121 :FLPFFSKPI 1mpxA 486 :VTEPLTEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19747 # 1y8xB.121.81 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :F 1y8xB 426 :A T0287 123 :PFFSKPI 1y8xB 428 :VTTPQTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19749 # 2asbA.121.29 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2asbA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :F 2asbA 134 :R T0287 124 :FFSKP 2asbA 137 :TETKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19751 # 1crzA.121.233 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)S246 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 240 :AL T0287 128 :PI 1crzA 247 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19753 # 1dkiA.121.193 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 121 :FLPFFSKPI 1dkiA 76 :NNPYFNHPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19754 # 1te0A.121.297 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 T0287 121 :F 1te0A 334 :V T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=19757 # 1ut7A.121.64 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F125 (1ut7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPF 1ut7A 62 :KALF T0287 126 :SK 1ut7A 67 :EK T0287 129 :I 1ut7A 70 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=19760 # 1t1uA.121.171 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 121 :FLPFF 1t1uA 173 :RLPGH T0287 128 :PI 1t1uA 180 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19762 # 1sz2A.121.117 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 Warning: unaligning (T0287)I129 (1sz2A)H115 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FLPFF 1sz2A 107 :AIPML T0287 128 :P 1sz2A 114 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=19764 # 3eipA.121.57 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 121 :FLPFFSKPI 3eipA 58 :LQPYFNHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19765 # 1f8eA.121.78 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :F 1f8eA 160 :S T0287 123 :PFFSKPI 1f8eA 162 :PLSSPPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19767 # 1oh0A.121.88 read from T0287.t04.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. T0287 121 :FL 1oh0A 89 :EM T0287 124 :F 1oh0A 92 :W T0287 126 :SKPI 1oh0A 94 :GQPC Number of specific fragments extracted= 3 number of extra gaps= 2 total=19770 # 1ogoX.121.149 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)K127 (1ogoX)N156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 121 :FLPFFS 1ogoX 150 :RVPADA T0287 129 :I 1ogoX 158 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=19772 # 1w0pA.121.419 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 121 :FLPFFSKPI 1w0pA 420 :NLNGVSAPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19773 # 1r5mA.121.143 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1r5mA)A262 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1r5mA 256 :VL T0287 124 :FFS 1r5mA 259 :FHR T0287 128 :PI 1r5mA 263 :PI Number of specific fragments extracted= 3 number of extra gaps= 2 total=19776 # 1w66A.121.135 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFF 1w66A 134 :WLPGR T0287 127 :K 1w66A 140 :A T0287 129 :I 1w66A 142 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=19779 # 1crzA.121.277 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 284 :TS T0287 124 :FFSKPI 1crzA 287 :QAGRPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19781 # 1nwzA.121.94 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1nwzA)T101 because P (beta_P) conformation "forbidden" or filtered. T0287 121 :FL 1nwzA 95 :TF T0287 124 :F 1nwzA 98 :Y T0287 126 :S 1nwzA 100 :M T0287 128 :PI 1nwzA 102 :PT Number of specific fragments extracted= 4 number of extra gaps= 3 total=19785 # 1as4B.121.16 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1as4B 374 :IVPTDTQ T0287 129 :I 1as4B 382 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=19787 # 1quqB.121.16 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FL 1quqB 17 :LA T0287 124 :FFSKPI 1quqB 20 :FIDKPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19789 # 1cv8.121.139 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1cv8 140 :WN T0287 125 :FS 1cv8 144 :DN T0287 129 :I 1cv8 148 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=19792 # 1wnaA.121.48 read from T0287.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)F125 (1wnaA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPF 1wnaA 49 :LLHT T0287 126 :SK 1wnaA 54 :KK T0287 129 :I 1wnaA 57 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=19795 # 2fbeA.121.56 read from T0287.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2fbeA)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2fbeA 57 :TP T0287 124 :FF 2fbeA 60 :FT T0287 129 :I 2fbeA 65 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=19798 # 2axwA.121.82 read from T0287.t04.many.frag # found chain 2axwA in template set Warning: unaligning (T0287)P128 (2axwA)Q90 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 2axwA 83 :SRPGQEE T0287 129 :I 2axwA 91 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19800 # 3bamA.121.95 read from T0287.t04.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 3bamA 96 :YK T0287 124 :FFSK 3bamA 99 :FIEN T0287 129 :I 3bamA 104 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=19803 # 2bjqA.122.36 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2bjqA 37 :W T0287 124 :FFSKPIM 2bjqA 39 :KFGKPIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=19805 # 1flmA.122.19 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :LPFFS 1flmA 20 :TQGED T0287 128 :PIM 1flmA 26 :PHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19807 # 1hynP.122.233 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :LPFFS 1hynP 234 :ADFLE T0287 128 :PIM 1hynP 240 :PVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19809 # 1ttwA.122.40 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 T0287 122 :LP 1ttwA 41 :AP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=19811 # 1y8xB.122.82 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1y8xB 428 :VTTPQTVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19812 # 1mpxA.122.464 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 122 :LPFFSKPIM 1mpxA 487 :TEPLTEPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19813 # 1dkiA.122.194 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)F124 (1dkiA)Y79 because G (3-10) conformation "forbidden" or filtered. T0287 122 :LP 1dkiA 77 :NP T0287 125 :FSKPIM 1dkiA 80 :FNHPKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19815 # 1h2wA.122.329 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 122 :LPFFSKPIM 1h2wA 330 :VPEHEKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19816 # 1te0A.122.298 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 1 number of extra gaps= 2 total=19817 # 2asbA.122.30 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2asbA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKP 2asbA 137 :TETKA T0287 130 :M 2asbA 143 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=19819 # 1quqB.122.17 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 1quqB 18 :A T0287 124 :FF 1quqB 20 :FI T0287 127 :KPIM 1quqB 23 :KPVC Number of specific fragments extracted= 3 number of extra gaps= 2 total=19822 # 1crzA.122.234 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 1crzA 241 :L T0287 127 :KPIM 1crzA 246 :SLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19824 # 1crzA.122.278 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0287 122 :L 1crzA 285 :S T0287 124 :FFSKPIM 1crzA 287 :QAGRPQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19826 # 1w0pA.122.420 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 122 :LPFFSKPIM 1w0pA 421 :LNGVSAPII Number of specific fragments extracted= 1 number of extra gaps= 0 total=19827 # 1nwzA.122.95 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1nwzA)T101 because P (beta_P) conformation "forbidden" or filtered. T0287 122 :L 1nwzA 96 :F T0287 124 :F 1nwzA 98 :Y T0287 128 :PIM 1nwzA 102 :PTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=19830 # 1ut7A.122.65 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFFSK 1ut7A 63 :ALFGEK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19832 # 1oh0A.122.89 read from T0287.t04.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :F 1oh0A 92 :W T0287 127 :KPIM 1oh0A 95 :QPCA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19834 # 1amx.122.59 read from T0287.t04.many.frag # found chain 1amx in template set T0287 122 :LPFFSKPIM 1amx 198 :KSYVSKDIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19835 # 2bsfA.122.86 read from T0287.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)S126 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFF 2bsfA 237 :LTVT T0287 127 :K 2bsfA 242 :N T0287 129 :IM 2bsfA 244 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19838 # 2fbeA.122.57 read from T0287.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2fbeA 58 :P T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :IM 2fbeA 65 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=19841 # 1sz2A.122.118 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 122 :LPFF 1sz2A 108 :IPML T0287 128 :PIM 1sz2A 114 :EHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19843 # 1j0pA.122.11 read from T0287.t04.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 122 :L 1j0pA 11 :M T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIM 1j0pA 17 :PVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=19846 # 1b12A.122.36 read from T0287.t04.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 122 :L 1b12A 112 :D T0287 128 :PIM 1b12A 118 :TLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19848 # 1r5mA.122.144 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1r5mA)F259 because G (3-10) conformation "forbidden" or filtered. T0287 122 :L 1r5mA 257 :L T0287 125 :FSKPIM 1r5mA 260 :HRAPIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19850 # 2a25A.122.137 read from T0287.t04.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2a25A 227 :L T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IM 2a25A 234 :LT Number of specific fragments extracted= 4 number of extra gaps= 3 total=19854 # 4bcl.122.244 read from T0287.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (4bcl)Q247 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)Q247 Warning: unaligning (T0287)K127 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (4bcl)S253 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :L 4bcl 245 :V T0287 125 :FS 4bcl 248 :LN T0287 128 :PI 4bcl 251 :PA Number of specific fragments extracted= 3 number of extra gaps= 3 total=19857 # 1cczA.122.78 read from T0287.t04.many.frag # found chain 1cczA in training set T0287 122 :LPFFSKPIM 1cczA 79 :SPNITDTMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19858 # 1b7yA.122.257 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 122 :LPFFS 1b7yA 258 :FPFVE T0287 128 :PIM 1b7yA 264 :GAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19860 # 1zsqA.122.46 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 122 :L 1zsqA 116 :S T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIM 1zsqA 122 :PFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=19863 # 1t1uA.122.172 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 122 :LPFF 1t1uA 174 :LPGH T0287 128 :PIM 1t1uA 180 :DTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19865 # 2bjqA.123.37 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2bjqA 39 :K T0287 127 :KPIMF 2bjqA 42 :KPIHG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19867 # 1flmA.123.20 read from T0287.t04.many.frag # found chain 1flmA in training set T0287 123 :PFFSKPIMF 1flmA 21 :QGEDGPHLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19868 # 1hynP.123.234 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 123 :PFFSKPIMF 1hynP 235 :DFLEQPVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19869 # 1y8xB.123.83 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. T0287 123 :PFFS 1y8xB 428 :VTTP T0287 128 :PIMF 1y8xB 433 :TVLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19871 # 1ttwA.123.41 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 123 :P 1ttwA 42 :P T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=19873 # 1te0A.123.299 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK T0287 131 :F 1te0A 344 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=19875 # 1dkiA.123.195 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 123 :PFFSKPIMF 1dkiA 78 :PYFNHPKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19876 # 1quqB.123.18 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FF 1quqB 20 :FI T0287 127 :KP 1quqB 23 :KP T0287 130 :MF 1quqB 26 :CF Number of specific fragments extracted= 3 number of extra gaps= 3 total=19879 # 1h2wA.123.330 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 123 :PFFSKPIMF 1h2wA 331 :PEHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19880 # 1crzA.123.279 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1crzA 287 :QAGRPQVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19881 # 1crzA.123.235 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMF 1crzA 245 :GSLNLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19882 # 1mpxA.123.465 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 123 :PFFSKPIMF 1mpxA 488 :EPLTEPLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19883 # 2asbA.123.31 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIMF 2asbA 139 :TKASEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19885 # 1nwzA.123.96 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 3 total=19887 # 1w0pA.123.421 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 123 :PFFSKPIMF 1w0pA 422 :NGVSAPIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19888 # 1dg6A.123.123 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)P123 (1dg6A)T214 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1dg6A 215 :SYPAPILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19889 # 1zsqA.123.47 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMF 1zsqA 122 :PFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19891 # 2a25A.123.138 read from T0287.t04.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IMF 2a25A 234 :LTW Number of specific fragments extracted= 3 number of extra gaps= 3 total=19894 # 2bsfA.123.87 read from T0287.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)S126 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 123 :PFF 2bsfA 238 :TVT T0287 127 :K 2bsfA 242 :N T0287 129 :IMF 2bsfA 244 :VLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19897 # 1b7yA.123.258 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 123 :PFFS 1b7yA 259 :PFVE T0287 128 :PIMF 1b7yA 264 :GAQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19899 # 1ut7A.123.66 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F125 (1ut7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)F73 T0287 123 :PF 1ut7A 64 :LF T0287 126 :SK 1ut7A 67 :EK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 3 number of extra gaps= 3 total=19902 # 1vchA.123.86 read from T0287.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)F124 (1vchA)Y88 because T (delta_L) conformation "forbidden" or filtered. T0287 123 :P 1vchA 87 :P T0287 125 :FSKPIMF 1vchA 89 :MEDPIIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19904 # 1amx.123.60 read from T0287.t04.many.frag # found chain 1amx in template set T0287 123 :PFFSKPIMF 1amx 199 :SYVSKDITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19905 # 1oh0A.123.90 read from T0287.t04.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :FF 1oh0A 92 :WN T0287 127 :KPIMF 1oh0A 95 :QPCAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19907 # 2fbeA.123.58 read from T0287.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 2fbeA 60 :FTS T0287 129 :IMF 2fbeA 65 :HYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=19909 # 1xubA.123.259 read from T0287.t04.many.frag # found chain 1xubA in training set Warning: unaligning (T0287)F125 (1xubA)I242 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xubA)R244 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xubA)R244 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1xubA)S246 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1xubA)S246 T0287 123 :PF 1xubA 240 :VE T0287 130 :MF 1xubA 247 :LM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19911 # 1j0pA.123.12 read from T0287.t04.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIMF 1j0pA 17 :PVVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=19913 # 1b12A.123.37 read from T0287.t04.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 128 :PIMF 1b12A 118 :TLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19914 # 1cczA.123.79 read from T0287.t04.many.frag # found chain 1cczA in training set Warning: unaligning (T0287)K127 (1cczA)D84 because P (beta_P) conformation "forbidden" or filtered. T0287 123 :PFFS 1cczA 80 :PNIT T0287 128 :PIMF 1cczA 85 :TMKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19916 # 2fojA.123.12 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P123 because first residue in template chain is (2fojA)T63 Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMF 2fojA 69 :ATF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19918 # 2bjqA.124.38 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 2bjqA 39 :KF T0287 128 :PIMFK 2bjqA 43 :PIHGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19920 # 1y8xB.124.84 read from T0287.t04.many.frag # found chain 1y8xB in template set T0287 124 :FFSKPIMFK 1y8xB 429 :TTPQTVLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19921 # 1hynP.124.235 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1hynP 237 :LE T0287 128 :PIMFK 1hynP 240 :PVLGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=19923 # 1ttwA.124.42 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=19924 # 1flmA.124.21 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 T0287 124 :FFSKPIMF 1flmA 22 :GEDGPHLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19925 # 1te0A.124.300 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK T0287 131 :FK 1te0A 344 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19927 # 1quqB.124.19 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 1quqB 20 :FI T0287 127 :KPIMFK 1quqB 23 :KPVCFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19929 # 1dkiA.124.196 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)S126 (1dkiA)N81 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 1dkiA 79 :YF T0287 127 :KPIMFK 1dkiA 82 :HPKNLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19931 # 1crzA.124.280 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 1crzA 287 :QA T0287 128 :PIMFK 1crzA 291 :PQVYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19933 # 1crzA.124.236 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFK 1crzA 246 :SLNLYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19934 # 1h2wA.124.331 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K132 (1h2wA)W340 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1h2wA 332 :EHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19935 # 1dg6A.124.124 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)K127 (1dg6A)A218 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 1dg6A 215 :SYP T0287 128 :PIMFK 1dg6A 219 :PILLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19937 # 1w0pA.124.422 read from T0287.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1w0pA)Q431 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FS 1w0pA 424 :VS T0287 128 :PIMF 1w0pA 427 :PIIL Number of specific fragments extracted= 2 number of extra gaps= 3 total=19939 # 2asbA.124.32 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2asbA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKP 2asbA 139 :TKA T0287 130 :MFK 2asbA 143 :EGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=19942 # 1zsqA.124.48 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMFK 1zsqA 122 :PFVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19944 # 1nwzA.124.97 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1nwzA)T101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1nwzA)K104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 126 :S 1nwzA 100 :M T0287 128 :PI 1nwzA 102 :PT Number of specific fragments extracted= 3 number of extra gaps= 3 total=19947 # 2bsfA.124.88 read from T0287.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)S126 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2bsfA 239 :VT T0287 127 :K 2bsfA 242 :N T0287 129 :IMFK 2bsfA 244 :VLLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=19950 # 1gvp.124.37 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)F124 (1gvp)G38 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1gvp 39 :NEYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19951 # 1b7yA.124.259 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)F124 (1b7yA)F260 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMFK 1b7yA 264 :GAQFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19953 # 2a25A.124.139 read from T0287.t04.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)F124 (2a25A)G229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2a25A)E237 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 2a25A 230 :HRR T0287 129 :IMF 2a25A 234 :LTW Number of specific fragments extracted= 2 number of extra gaps= 3 total=19955 # 1amx.124.61 read from T0287.t04.many.frag # found chain 1amx in template set T0287 124 :FFSKPIMFK 1amx 200 :YVSKDITIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19956 # 1vchA.124.87 read from T0287.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)K127 (1vchA)D91 because L (left) conformation "forbidden" or filtered. T0287 124 :FFS 1vchA 88 :YME T0287 128 :PIMFK 1vchA 92 :PIIQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19958 # 1gnyA.124.100 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFS 1gnyA 191 :TAD T0287 128 :PIMFK 1gnyA 195 :DLTLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19960 # 2fojA.124.13 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMFK 2fojA 69 :ATFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19962 # 1mpxA.124.466 read from T0287.t04.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)S126 (1mpxA)T491 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1mpxA)E492 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1mpxA)A497 because D (zeta) conformation "forbidden" or filtered. T0287 124 :FF 1mpxA 489 :PL T0287 128 :PIMF 1mpxA 493 :PLQI Number of specific fragments extracted= 2 number of extra gaps= 2 total=19964 # 1uh4A.124.584 read from T0287.t04.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)F124 (1uh4A)N585 because G (3-10) conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1uh4A 586 :DSVSHTVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19965 # 2fbeA.124.59 read from T0287.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 2fbeA 60 :FTS T0287 129 :IMFK 2fbeA 65 :HYWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19967 # 1wnaA.124.51 read from T0287.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)F125 (1wnaA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1wnaA)K55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :F 1wnaA 52 :T T0287 126 :S 1wnaA 54 :K T0287 129 :IMFK 1wnaA 57 :LLVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=19970 # 1y1oA.124.70 read from T0287.t04.many.frag # found chain 1y1oA in template set T0287 124 :FFSKPIMFK 1y1oA 68 :KRSAAVITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19971 # 1l6pA.124.75 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 1l6pA 76 :IYRD T0287 129 :IMFK 1l6pA 81 :LTLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19973 # 1quqB.125.20 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1quqB 21 :IDKPVCFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19974 # 1dkiA.125.197 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)K127 (1dkiA)H82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1dkiA 80 :FN T0287 129 :IMFKM 1dkiA 84 :KNLFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19976 # 1y8xB.125.85 read from T0287.t04.many.frag # found chain 1y8xB in template set T0287 125 :FSKPIMFKM 1y8xB 430 :TPQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19977 # 2bjqA.125.39 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :F 2bjqA 40 :F T0287 127 :KPIMFKM 2bjqA 42 :KPIHGRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19979 # 1te0A.125.301 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 125 :FSK 1te0A 338 :DDK T0287 131 :FKM 1te0A 344 :LQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19981 # 1hynP.125.236 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 125 :FSKPIMFKM 1hynP 237 :LEQPVLGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19982 # 1flmA.125.22 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)S126 (1flmA)D24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 125 :F 1flmA 23 :E T0287 127 :KPIMF 1flmA 25 :GPHLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19984 # 1ttwA.125.43 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 129 :I 1ttwA 48 :L T0287 132 :KM 1ttwA 51 :FM Number of specific fragments extracted= 2 number of extra gaps= 2 total=19986 # 1crzA.125.281 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1crzA)V293 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :F 1crzA 288 :A T0287 127 :KPI 1crzA 290 :RPQ T0287 131 :FKM 1crzA 294 :YKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=19989 # 1crzA.125.237 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMFKM 1crzA 245 :GSLNLYVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=19990 # 1dg6A.125.125 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)K127 (1dg6A)A218 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FS 1dg6A 216 :YP T0287 128 :PIMFKM 1dg6A 219 :PILLMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19992 # 1gnyA.125.101 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1gnyA 192 :AD T0287 128 :PIMFKM 1gnyA 195 :DLTLTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=19994 # 1w0pA.125.423 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 125 :FSKPIMFKM 1w0pA 424 :VSAPIILQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19995 # 1zsqA.125.49 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)F125 (1zsqA)R119 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKM 1zsqA 122 :PFVLDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19996 # 1gvp.125.38 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 T0287 125 :FSKPIMFK 1gvp 39 :NEYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19997 # 2asbA.125.33 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 126 :SKPIMFKM 2asbA 139 :TKASEGVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19998 # 1nwzA.125.98 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1nwzA)T101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 128 :PIM 1nwzA 102 :PTK T0287 133 :M 1nwzA 107 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=20000 # 1h2wA.125.332 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 125 :FSKPIMFKM 1h2wA 333 :HEKDVLEWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20001 # 1ikoP.125.77 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1ikoP 107 :PD T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKM 1ikoP 113 :FTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=20004 # 1b7yA.125.260 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMFKM 1b7yA 264 :GAQFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20006 # 1ddlA.125.123 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ddlA)S124 T0287 126 :SKPIMFKM 1ddlA 125 :VKPIDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20007 # 1pgl2.125.290 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)K127 (1pgl2)E293 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FS 1pgl2 291 :IQ T0287 129 :IMFKM 1pgl2 295 :VVLKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20009 # 2awgA.125.9 read from T0287.t04.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)S126 (2awgA)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2awgA)L101 because G (3-10) conformation "forbidden" or filtered. T0287 125 :F 2awgA 97 :L T0287 127 :K 2awgA 99 :N T0287 130 :MFKM 2awgA 102 :LRKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20012 # 2bsfA.125.89 read from T0287.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)F125 (2bsfA)T240 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 2bsfA 241 :SN T0287 129 :IMFKM 2bsfA 244 :VLLTF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20014 # 1vcaA.125.104 read from T0287.t04.many.frag # found chain 1vcaA in training set Warning: unaligning (T0287)S126 (1vcaA)G106 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :F 1vcaA 105 :A T0287 127 :KPIMFKM 1vcaA 107 :KPITVKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=20016 # 1v05A.125.20 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)K132 (1v05A)T2657 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSKP 1v05A 2650 :VGQK T0287 131 :F 1v05A 2656 :F T0287 133 :M 1v05A 2658 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=20019 # 2fojA.125.14 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSK 2fojA 65 :WRS T0287 129 :IMFKM 2fojA 69 :ATFQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20021 # 1uh4A.125.585 read from T0287.t04.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)M130 (1uh4A)T591 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSKPI 1uh4A 586 :DSVSH T0287 131 :FKM 1uh4A 592 :VNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20023 # 1l6pA.125.76 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K127 (1l6pA)D79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1l6pA 77 :YR T0287 129 :IMFKM 1l6pA 81 :LTLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20025 # 2bbdA.125.126 read from T0287.t04.many.frag # found chain 2bbdA in template set Warning: unaligning (T0287)P128 (2bbdA)N131 because L (left) conformation "forbidden" or filtered. T0287 125 :FSK 2bbdA 128 :MVQ T0287 129 :IMFKM 2bbdA 132 :IILSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20027 # 1te0A.126.302 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 126 :SK 1te0A 339 :DK T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20029 # 1dkiA.126.198 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 126 :SKPIMFKMS 1dkiA 81 :NHPKNLFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20030 # 2bjqA.126.40 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFKM 2bjqA 43 :PIHGRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=20031 # 1quqB.126.21 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1quqB 23 :KPVCFVGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20032 # 1y8xB.126.86 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 T0287 126 :SKPIMFKM 1y8xB 431 :PQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20033 # 1gnyA.126.102 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1gnyA 193 :D T0287 128 :PIMFKMS 1gnyA 195 :DLTLTCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20035 # 1flmA.126.23 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 126 :S 1flmA 24 :D T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :S 1flmA 32 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=20038 # 1dg6A.126.126 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)K132 (1dg6A)M223 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1dg6A 217 :PAPILL T0287 133 :MS 1dg6A 224 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20040 # 1crzA.126.282 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFKMS 1crzA 291 :PQVYKVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20041 # 1hynP.126.237 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 126 :SKPIMFKMS 1hynP 238 :EQPVLGFVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20042 # 1crzA.126.238 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)K127 (1crzA)S246 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :S 1crzA 245 :G T0287 128 :PIMFKMS 1crzA 247 :LNLYVMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20044 # 1ttwA.126.44 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1ttwA)R53 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=20045 # 1pgl2.126.291 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 1pgl2 292 :QE T0287 129 :IMFKMS 1pgl2 295 :VVLKFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20047 # 1gvp.126.39 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 126 :SKPIMFK 1gvp 40 :EYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20048 # 1ikoP.126.78 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1ikoP 108 :D T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKMS 1ikoP 113 :FTIK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20051 # 1v05A.126.21 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 126 :SKP 1v05A 2651 :GQK T0287 131 :FKMS 1v05A 2656 :FTVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20053 # 1b7yA.126.261 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1b7yA)A268 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :S 1b7yA 262 :E T0287 128 :PIMF 1b7yA 264 :GAQF T0287 133 :MS 1b7yA 269 :VW Number of specific fragments extracted= 3 number of extra gaps= 2 total=20056 # 1l6pA.126.77 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 1l6pA 78 :RD T0287 129 :IMFKMS 1l6pA 81 :LTLPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20058 # 1ddlA.126.124 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ddlA)A132 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1ddlA 125 :VKPIDV T0287 134 :S 1ddlA 133 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=20060 # 1zsqA.126.50 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMS 1zsqA 122 :PFVLDAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20061 # 1wmxA.126.130 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 126 :S 1wmxA 131 :T T0287 129 :IM 1wmxA 134 :QH T0287 133 :MS 1wmxA 138 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=20064 # 1ogoX.126.154 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 126 :SKPIMFKMS 1ogoX 155 :ANGRKFSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20065 # 2fojA.126.15 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 2fojA 66 :RS T0287 129 :IMFKMS 2fojA 69 :ATFQFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20067 # 1vcaA.126.105 read from T0287.t04.many.frag # found chain 1vcaA in training set T0287 126 :SKPIMFKMS 1vcaA 106 :GKPITVKCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20068 # 2awgA.126.10 read from T0287.t04.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 126 :SK 2awgA 98 :GN T0287 129 :IMFKMS 2awgA 101 :LLRKKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20070 # 1w0pA.126.424 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 126 :SKPIMFKMS 1w0pA 425 :SAPIILQSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20071 # 2d9rA.126.18 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MS 2d9rA 26 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20073 # 1mspA.126.64 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)S126 (1mspA)K65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1mspA 66 :E T0287 129 :IMFKMS 1mspA 68 :VLMAVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20075 # 1mwpA.126.61 read from T0287.t04.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)K127 (1mwpA)Q90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1mwpA)T93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1mwpA)W97 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :S 1mwpA 89 :N T0287 128 :PI 1mwpA 91 :PV T0287 131 :FKM 1mwpA 94 :IQN Number of specific fragments extracted= 3 number of extra gaps= 3 total=20078 # 1nwzA.126.99 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)M130 (1nwzA)K104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 126 :SKPI 1nwzA 100 :MTPT T0287 133 :MS 1nwzA 107 :VH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20080 # 1te0A.127.303 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 T0287 127 :K 1te0A 340 :K T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=20082 # 1quqB.127.22 read from T0287.t04.many.frag # found chain 1quqB in template set T0287 127 :KPIMFKMSI 1quqB 23 :KPVCFVGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20083 # 1gnyA.127.103 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1gnyA 195 :DLTLTCTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20084 # 1dkiA.127.199 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 127 :KPIMFKMSI 1dkiA 82 :HPKNLFAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20085 # 2bjqA.127.41 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 T0287 127 :KPIMFKM 2bjqA 42 :KPIHGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20086 # 1y8xB.127.87 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 128 :PIMFKM 1y8xB 433 :TVLFKL Number of specific fragments extracted= 1 number of extra gaps= 2 total=20087 # 1dg6A.127.127 read from T0287.t04.many.frag # found chain 1dg6A in training set T0287 127 :KPIMFKMSI 1dg6A 218 :APILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20088 # 1pgl2.127.292 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1pgl2 293 :E T0287 129 :IMFKMSI 1pgl2 295 :VVLKFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20090 # 1wmxA.127.131 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSI 1wmxA 138 :IPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20092 # 1l6pA.127.78 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 1l6pA 79 :D T0287 129 :IMFKMSI 1l6pA 81 :LTLPVTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20094 # 1flmA.127.24 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SI 1flmA 32 :WN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20096 # 1ddlA.127.125 read from T0287.t04.many.frag # found chain 1ddlA in template set T0287 127 :KPIMFKMSI 1ddlA 126 :KPIDVEANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20097 # 1gvp.127.40 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 127 :KPIMFK 1gvp 41 :YPVLVK T0287 135 :I 1gvp 49 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20099 # 1crzA.127.283 read from T0287.t04.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 290 :RPQVYKVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20100 # 1ikoP.127.79 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPI 1ikoP 109 :QDV T0287 131 :FKMSI 1ikoP 113 :FTIKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20102 # 1v05A.127.22 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)K127 (1v05A)Q2652 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)K132 (1v05A)T2657 because E (beta_S) conformation "forbidden" or filtered. T0287 128 :P 1v05A 2653 :K T0287 131 :F 1v05A 2656 :F T0287 133 :MSI 1v05A 2658 :VDC Number of specific fragments extracted= 3 number of extra gaps= 3 total=20105 # 2d9rA.127.19 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSI 2d9rA 26 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=20107 # 1b7yA.127.262 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1b7yA 264 :GAQFAVWW Number of specific fragments extracted= 1 number of extra gaps= 1 total=20108 # 1ogoX.127.155 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 127 :K 1ogoX 156 :N T0287 129 :IMFKMSI 1ogoX 158 :RKFSVEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20110 # 1zsqA.127.51 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 128 :PIMF 1zsqA 122 :PFVL T0287 133 :MSI 1zsqA 127 :ASL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20112 # 1qexA.127.155 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)K132 (1qexA)N161 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :KPIMF 1qexA 156 :STSVW T0287 133 :MSI 1qexA 162 :YSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20114 # 2fojA.127.16 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 2fojA 67 :S T0287 129 :IMFKMSI 2fojA 69 :ATFQFTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20116 # 1ttwA.127.45 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :MSI 1ttwA 52 :MRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20118 # 1mspA.127.65 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1mspA 66 :E T0287 129 :IMFKMSI 1mspA 68 :VLMAVSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=20120 # 1crzA.127.239 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)M130 (1crzA)L249 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPI 1crzA 246 :SLN T0287 131 :FKMSI 1crzA 250 :YVMDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20122 # 1mwpA.127.62 read from T0287.t04.many.frag # found chain 1mwpA in training set T0287 127 :KPIMFKMSI 1mwpA 90 :QPVTIQNWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20123 # 1w0pA.127.425 read from T0287.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)M130 (1w0pA)I429 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPI 1w0pA 426 :API T0287 131 :FKMSI 1w0pA 430 :LQSEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20125 # 1vcaA.127.106 read from T0287.t04.many.frag # found chain 1vcaA in training set T0287 127 :KPIMFKMSI 1vcaA 107 :KPITVKCSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20126 # 2awgA.127.11 read from T0287.t04.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)K127 (2awgA)N99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 2awgA 101 :LLRKKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20127 # 1iq4A.127.123 read from T0287.t04.many.frag # found chain 1iq4A in training set Warning: unaligning (T0287)K127 (1iq4A)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1iq4A)R125 because G (3-10) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1iq4A 126 :GNYTLGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20128 # 1te0A.128.304 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=20129 # 1gnyA.128.104 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 128 :PIMFKMSIR 1gnyA 195 :DLTLTCTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=20130 # 1quqB.128.23 read from T0287.t04.many.frag # found chain 1quqB in template set T0287 128 :PIMFKMSIR 1quqB 24 :PVCFVGRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20131 # 1pgl2.128.293 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1pgl2 295 :VVLKFSQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20132 # 1dkiA.128.200 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1dkiA 84 :KNLFAAIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20133 # 1l6pA.128.79 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMF 1l6pA 81 :LTL T0287 133 :MSIR 1l6pA 85 :VTIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20135 # 1dg6A.128.128 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 T0287 128 :PIMFKMSI 1dg6A 219 :PILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20136 # 1ddlA.128.126 read from T0287.t04.many.frag # found chain 1ddlA in template set T0287 128 :PIMFKMSIR 1ddlA 127 :PIDVEANLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20137 # 1y8xB.128.88 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 128 :PIMFKM 1y8xB 433 :TVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20138 # 1gvp.128.41 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 128 :PIMFK 1gvp 42 :PVLVK T0287 135 :IR 1gvp 49 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20140 # 1ikoP.128.80 read from T0287.t04.many.frag # found chain 1ikoP in template set T0287 128 :PIMFKMSIR 1ikoP 110 :DVKFTIKFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20141 # 1wmxA.128.132 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIR 1wmxA 138 :IPLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=20143 # 2d9rA.128.20 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSIR 2d9rA 26 :AIIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20145 # 1qexA.128.156 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFK 1qexA 157 :TSVWN T0287 134 :SIR 1qexA 163 :SIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20147 # 2bjqA.128.42 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)M130 (2bjqA)H45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2bjqA)R47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 T0287 128 :PI 2bjqA 43 :PI T0287 131 :F 2bjqA 46 :G T0287 133 :M 2bjqA 48 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=20150 # 1flmA.128.25 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SIR 1flmA 32 :WNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20152 # 1v05A.128.23 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1v05A)C2660 because G (3-10) conformation "forbidden" or filtered. T0287 128 :P 1v05A 2653 :K T0287 132 :KMS 1v05A 2657 :TVD T0287 136 :R 1v05A 2661 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=20155 # 1crzA.128.284 read from T0287.t04.many.frag # found chain 1crzA in template set T0287 128 :PIMFKMSIR 1crzA 291 :PQVYKVNIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20156 # 1b7yA.128.263 read from T0287.t04.many.frag # found chain 1b7yA in template set T0287 128 :PIMFKMSIR 1b7yA 264 :GAQFAVWWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20157 # 2fojA.128.17 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2fojA)T74 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFKM 2fojA 69 :ATFQF T0287 135 :IR 2fojA 75 :VE Number of specific fragments extracted= 2 number of extra gaps= 2 total=20159 # 1mspA.128.66 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1mspA 68 :VLMAVSCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20160 # 2bzgA.128.114 read from T0287.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)P128 (2bzgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2bzgA 129 :SLYCCSIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20161 # 1ttwA.128.46 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 132 :KMSI 1ttwA 51 :FMRA Number of specific fragments extracted= 2 number of extra gaps= 3 total=20163 # 1zsqA.128.52 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 128 :PIMF 1zsqA 122 :PFVL T0287 133 :MSIR 1zsqA 127 :ASLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20165 # 1ogoX.128.156 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 128 :PIMFKMSIR 1ogoX 157 :GRKFSVEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20166 # 1mwpA.128.63 read from T0287.t04.many.frag # found chain 1mwpA in training set T0287 128 :PIMFKMSIR 1mwpA 91 :PVTIQNWCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20167 # 2f15A.128.21 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)P128 (2f15A)E89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)R136 (2f15A)N97 because G (3-10) conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 133 :MSI 2f15A 94 :GSF Number of specific fragments extracted= 2 number of extra gaps= 3 total=20169 # 1uh4A.128.588 read from T0287.t04.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)K132 (1uh4A)N593 because N (gamma') conformation "forbidden" or filtered. T0287 128 :PIMF 1uh4A 589 :SHTV T0287 133 :MSIR 1uh4A 594 :VPVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20171 # 2cy7A.128.305 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 128 :PIMFKMSIR 2cy7A 303 :HPPCRMSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20172 # 1vajA.128.113 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 128 :PIMFK 1vajA 114 :PELIE T0287 134 :SIR 1vajA 120 :PPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20174 # 1te0A.129.305 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)E137 (1te0A)E350 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=20175 # 1pgl2.129.294 read from T0287.t04.many.frag # found chain 1pgl2 in template set T0287 129 :IMFKMSIRE 1pgl2 295 :VVLKFSQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20176 # 1gnyA.129.105 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 129 :IMFKMSIRE 1gnyA 196 :LTLTCTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20177 # 1l6pA.129.80 read from T0287.t04.many.frag # found chain 1l6pA in training set T0287 129 :IMFKMSIRE 1l6pA 81 :LTLPVTINQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20178 # 1dkiA.129.201 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 129 :IMFKMSIRE 1dkiA 84 :KNLFAAIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=20179 # 1quqB.129.24 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1quqB 25 :VCFV T0287 134 :SIRE 1quqB 30 :RLEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20181 # 1ddlA.129.127 read from T0287.t04.many.frag # found chain 1ddlA in template set T0287 129 :IMFKMSIRE 1ddlA 128 :IDVEANLTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20182 # 1qexA.129.157 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)E137 (1qexA)S166 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1qexA 158 :SVWNYSIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20183 # 2d9rA.129.21 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 129 :IM 2d9rA 22 :IE T0287 133 :MSIRE 2d9rA 26 :AIIRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20185 # 1v05A.129.24 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 131 :FKMSIRE 1v05A 2656 :FTVDCSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20186 # 2cy7A.129.306 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 129 :IMFKMSIRE 2cy7A 304 :PPCRMSIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20187 # 1gvp.129.42 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 129 :IMFK 1gvp 43 :VLVK T0287 135 :IRE 1gvp 49 :LDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20189 # 1ikoP.129.81 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ikoP)I115 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :I 1ikoP 111 :V T0287 131 :FK 1ikoP 113 :FT T0287 134 :SIRE 1ikoP 116 :KFQE Number of specific fragments extracted= 3 number of extra gaps= 2 total=20192 # 1mspA.129.67 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)E137 (1mspA)T76 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1mspA 68 :VLMAVSCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20193 # 1dg6A.129.129 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1dg6A)N228 T0287 129 :IMFKMSI 1dg6A 220 :ILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20194 # 1b7yA.129.264 read from T0287.t04.many.frag # found chain 1b7yA in template set T0287 129 :IMFKMSIRE 1b7yA 265 :AQFAVWWPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20195 # 1wmxA.129.133 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIRE 1wmxA 138 :IPLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20197 # 2fojA.129.18 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)I129 (2fojA)A69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 2fojA 70 :TFQFTVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=20198 # 2f15A.129.22 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 134 :SIR 2f15A 95 :SFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20200 # 1ng0A.129.179 read from T0287.t04.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)I135 (1ng0A)C186 because G (3-10) conformation "forbidden" or filtered. T0287 129 :IMFKMS 1ng0A 180 :VTSALP T0287 136 :RE 1ng0A 187 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20202 # 1vajA.129.114 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M130 (1vajA)L116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1vajA)E118 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :I 1vajA 115 :E T0287 131 :F 1vajA 117 :I T0287 133 :MSIRE 1vajA 119 :GPPEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=20205 # 1ttwA.129.47 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 132 :KMSI 1ttwA 51 :FMRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20207 # 1ntvA.129.81 read from T0287.t04.many.frag # found chain 1ntvA in training set T0287 129 :IMFKMSIRE 1ntvA 104 :LQHHHAVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20208 # 1wyzA.129.206 read from T0287.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1wyzA 207 :FIQT T0287 134 :SIRE 1wyzA 212 :TVKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20210 # 1wthD.129.83 read from T0287.t04.many.frag # found chain 1wthD in template set T0287 129 :IMFKMSIRE 1wthD 84 :KTRIYGCKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=20211 # 2bzgA.129.115 read from T0287.t04.many.frag # found chain 2bzgA in template set T0287 129 :IMFKMSIRE 2bzgA 129 :SLYCCSIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20212 # 2bjqA.129.43 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)K132 (2bjqA)R47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 T0287 129 :IMF 2bjqA 44 :IHG T0287 133 :M 2bjqA 48 :A T0287 137 :E 2bjqA 52 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=20215 # 1crzA.129.285 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R136 (1crzA)N299 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1crzA)G300 because S (epsilon) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1crzA 292 :QVYKVNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20216 # 2bvcA.129.40 read from T0287.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (2bvcA)F35 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (2bvcA)F35 T0287 129 :I 2bvcA 33 :Q T0287 132 :KMSIRE 2bvcA 36 :TIPASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20218 # 1c8nA.129.202 read from T0287.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)R136 (1c8nA)T210 because G (3-10) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1c8nA 203 :IYVDVDV T0287 137 :E 1c8nA 211 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=20220 # 1te0A.130.306 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20222 # 1pgl2.130.295 read from T0287.t04.many.frag # found chain 1pgl2 in template set T0287 130 :MFKMSIREM 1pgl2 296 :VLKFSQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20223 # 1l6pA.130.81 read from T0287.t04.many.frag # found chain 1l6pA in training set T0287 130 :MFKMSIREM 1l6pA 82 :TLPVTINQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20224 # 1gnyA.130.106 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 130 :MFKMSIREM 1gnyA 197 :TLTCTIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=20225 # 1dkiA.130.202 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 130 :MFKMSIREM 1dkiA 85 :NLFAAISTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20226 # 1ddlA.130.128 read from T0287.t04.many.frag # found chain 1ddlA in template set T0287 130 :MFKMSIREM 1ddlA 129 :DVEANLTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20227 # 2cy7A.130.307 read from T0287.t04.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)M130 (2cy7A)P305 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 2cy7A 306 :CRMSIAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20228 # 1quqB.130.25 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1quqB 26 :CFV T0287 134 :SIREM 1quqB 30 :RLEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20230 # 1vajA.130.115 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 130 :MFK 1vajA 116 :LIE T0287 134 :SIREM 1vajA 120 :PPEER Number of specific fragments extracted= 2 number of extra gaps= 1 total=20232 # 2f15A.130.23 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 130 :M 2f15A 91 :F T0287 134 :SIR 2f15A 95 :SFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20234 # 1qexA.130.158 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1qexA 159 :VWN T0287 134 :SI 1qexA 163 :SI T0287 137 :EM 1qexA 166 :SM Number of specific fragments extracted= 3 number of extra gaps= 2 total=20237 # 1b7yA.130.265 read from T0287.t04.many.frag # found chain 1b7yA in template set T0287 130 :MFKMSIREM 1b7yA 266 :QFAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20238 # 1ng0A.130.180 read from T0287.t04.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)M138 (1ng0A)F189 because G (3-10) conformation "forbidden" or filtered. T0287 130 :MFKMSIRE 1ng0A 181 :TSALPCDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20239 # 1mspA.130.68 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIRE 1mspA 69 :LMAVSCDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20240 # 1v05A.130.25 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 131 :FKMSIREM 1v05A 2656 :FTVDCSKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20241 # 1gvp.130.43 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)E137 (1gvp)E51 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MFK 1gvp 44 :LVK T0287 135 :IR 1gvp 49 :LD T0287 138 :M 1gvp 52 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=20244 # 1wthD.130.84 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1wthD 85 :TRIYGCK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=20246 # 1ikoP.130.82 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1ikoP)T114 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :F 1ikoP 113 :F T0287 133 :MSIREM 1ikoP 115 :IKFQEF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20248 # 2fojA.130.19 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)R136 (2fojA)E76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSI 2fojA 70 :TFQFTV T0287 138 :M 2fojA 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=20250 # 1c8nA.130.203 read from T0287.t04.many.frag # found chain 1c8nA in template set T0287 130 :MFKMSIREM 1c8nA 204 :YVDVDVTRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20251 # 1wmxA.130.134 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 130 :M 1wmxA 135 :H T0287 133 :MSIREM 1wmxA 138 :IPLRDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20253 # 2d9rA.130.22 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 130 :M 2d9rA 23 :E T0287 133 :MSIREM 2d9rA 26 :AIIRQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20255 # 1wyzA.130.207 read from T0287.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1wyzA)T212 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MFK 1wyzA 208 :IQT T0287 135 :IREM 1wyzA 213 :VKDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20257 # 1ntvA.130.82 read from T0287.t04.many.frag # found chain 1ntvA in training set T0287 130 :MFKMSIREM 1ntvA 105 :QHHHAVHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20258 # 1ttwA.130.48 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)T58 T0287 133 :MSI 1ttwA 52 :MRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=20259 # 1nls.130.61 read from T0287.t04.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 Warning: unaligning (T0287)E137 (1nls)N69 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFKM 1nls 62 :SAVV T0287 136 :R 1nls 68 :P T0287 138 :M 1nls 70 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=20262 # 1msc.130.42 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 130 :MFKMSI 1msc 43 :KVTCSV T0287 138 :M 1msc 51 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=20264 # 1gmeA.130.55 read from T0287.t04.many.frag # found chain 1gmeA in template set T0287 130 :MFKMSIREM 1gmeA 56 :VFKADLPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20265 # 1ve2A.130.194 read from T0287.t04.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)M133 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1ve2A 195 :VRL T0287 134 :SIREM 1ve2A 199 :RVEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20267 # 1e2wA.130.190 read from T0287.t04.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)K132 (1e2wA)E193 because E (beta_S) conformation "forbidden" or filtered. T0287 130 :MF 1e2wA 191 :GF T0287 133 :MSIREM 1e2wA 194 :VSIEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20269 # 1l6pA.131.82 read from T0287.t04.many.frag # found chain 1l6pA in training set T0287 131 :FKMSIREMD 1l6pA 83 :LPVTINQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20270 # 1pgl2.131.296 read from T0287.t04.many.frag # found chain 1pgl2 in template set T0287 131 :FKMSIREMD 1pgl2 297 :LKFSQEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20271 # 1te0A.131.307 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20273 # 1gnyA.131.107 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 131 :FKMSIREMD 1gnyA 198 :LTCTIDEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20274 # 2cy7A.131.308 read from T0287.t04.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)K132 (2cy7A)R307 because E (beta_S) conformation "forbidden" or filtered. T0287 131 :F 2cy7A 306 :C T0287 133 :MSIREMD 2cy7A 308 :MSIAELD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20276 # 2f15A.131.24 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 139 :D 2f15A 100 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=20278 # 1ng0A.131.181 read from T0287.t04.many.frag # found chain 1ng0A in template set T0287 131 :FKMSIREMD 1ng0A 182 :SALPCDEFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20279 # 1vajA.131.116 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 131 :FKMSIREMD 1vajA 117 :IEGPPEERP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20280 # 1bco.131.285 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1bco 533 :VR T0287 134 :SIREMD 1bco 536 :DPQQLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20282 # 1qexA.131.159 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1qexA)S166 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSI 1qexA 160 :WNYSI T0287 138 :MD 1qexA 167 :MF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20284 # 1ddlA.131.129 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)D139 (1ddlA)N138 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1ddlA 130 :VEANLTNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20285 # 1mspA.131.69 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1mspA 70 :MAVSCDT T0287 139 :D 1mspA 78 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=20287 # 1c8nA.131.204 read from T0287.t04.many.frag # found chain 1c8nA in template set T0287 131 :FKMSIREMD 1c8nA 205 :VDVDVTRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20288 # 1dkiA.131.203 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)M138 (1dkiA)R93 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1dkiA 86 :LFAAIST T0287 139 :D 1dkiA 94 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=20290 # 1c96A.131.309 read from T0287.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 T0287 131 :FKMSIREM 1c96A 311 :IEINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20291 # 1e2wA.131.191 read from T0287.t04.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)E137 (1e2wA)K198 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIR 1e2wA 192 :FEVSIE T0287 138 :MD 1e2wA 199 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20293 # 1wthD.131.85 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1wthD 86 :RIYGCKHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20294 # 1msc.131.43 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 131 :FKMSI 1msc 44 :VTCSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20296 # 1b7yA.131.266 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)D139 (1b7yA)G275 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1b7yA 267 :FAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=20297 # 1wyzA.131.208 read from T0287.t04.many.frag # found chain 1wyzA in template set T0287 131 :FKMSIREMD 1wyzA 209 :QTRTVKDWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20298 # 1xt5A.131.72 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1xt5A)Y73 Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :EMD 1xt5A 79 :DFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20300 # 1nls.131.62 read from T0287.t04.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 Warning: unaligning (T0287)R136 (1nls)P68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1nls)N69 because T (delta_L) conformation "forbidden" or filtered. T0287 131 :FKM 1nls 63 :AVV T0287 138 :MD 1nls 70 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20302 # 1gvp.131.44 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)E137 (1gvp)E51 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FK 1gvp 45 :VK T0287 135 :IR 1gvp 49 :LD T0287 138 :MD 1gvp 52 :GQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=20305 # 1gmeA.131.56 read from T0287.t04.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)R136 (1gmeA)P62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSI 1gmeA 57 :FKADL T0287 138 :MD 1gmeA 64 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20307 # 1wmxA.131.135 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 133 :MSIREMD 1wmxA 138 :IPLRDLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=20308 # 1v05A.131.26 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 131 :FKMSIREMD 1v05A 2656 :FTVDCSKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20309 # 1s28A.131.53 read from T0287.t04.many.frag # found chain 1s28A in template set T0287 131 :FKMSIREMD 1s28A 54 :FLSDIGVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=20310 # 1quqB.131.26 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1quqB 27 :FV T0287 134 :SIREMD 1quqB 30 :RLEKIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20312 # 1kq1A.131.31 read from T0287.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1kq1A 32 :MKGVIEE T0287 139 :D 1kq1A 40 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=20314 # 1gpqA.131.80 read from T0287.t04.many.frag # found chain 1gpqA in template set T0287 131 :FKMSIREMD 1gpqA 81 :LFSTIDEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20315 # 1l6pA.132.83 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1l6pA 84 :PVTINQA T0287 140 :S 1l6pA 92 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=20317 # 1bco.132.286 read from T0287.t04.many.frag # found chain 1bco in template set T0287 132 :KMSIREMDS 1bco 534 :RFDPQQLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20318 # 2cy7A.132.309 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 132 :KMSIREMDS 2cy7A 307 :RMSIAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20319 # 2f15A.132.25 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 139 :DS 2f15A 100 :ST Number of specific fragments extracted= 2 number of extra gaps= 2 total=20321 # 1gnyA.132.108 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K132 (1gnyA)T199 because E (beta_S) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1gnyA 200 :CTIDEDDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20322 # 1te0A.132.308 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 T0287 132 :KMS 1te0A 345 :QVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20324 # 1vajA.132.117 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 132 :KMSIREMDS 1vajA 118 :EGPPEERPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20325 # 1ng0A.132.182 read from T0287.t04.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)M133 (1ng0A)L184 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :K 1ng0A 183 :A T0287 134 :SIREMDS 1ng0A 185 :PCDEFSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20327 # 1pgl2.132.297 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1pgl2)T306 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMS 1pgl2 298 :KFS T0287 136 :REMD 1pgl2 302 :EEFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20329 # 1e2wA.132.192 read from T0287.t04.many.frag # found chain 1e2wA in training set T0287 132 :KMSIREMDS 1e2wA 193 :EVSIEKANG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20330 # 1xt5A.132.73 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :EMDS 1xt5A 79 :DFLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20332 # 1h6lA.132.171 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSI 1h6lA 200 :KVRA T0287 137 :EMDS 1h6lA 205 :KMNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20334 # 1luzA.132.15 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :K 1luzA 16 :K T0287 134 :SIREMD 1luzA 18 :RVYEKD Number of specific fragments extracted= 2 number of extra gaps= 2 total=20336 # 1c96A.132.310 read from T0287.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 132 :KMSIREM 1c96A 312 :EINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20337 # 1qexA.132.160 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1qexA)F168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :K 1qexA 161 :N T0287 134 :SI 1qexA 163 :SI T0287 137 :EM 1qexA 166 :SM Number of specific fragments extracted= 3 number of extra gaps= 3 total=20340 # 1hx6A.132.359 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)K132 (1hx6A)V361 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1hx6A)N368 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREM 1hx6A 362 :VNPKTV T0287 140 :S 1hx6A 369 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=20342 # 1kq1A.132.32 read from T0287.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIRE 1kq1A 33 :KGVIEE T0287 140 :S 1kq1A 41 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=20344 # 1wyzA.132.209 read from T0287.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1wyzA 210 :T T0287 134 :SIREMDS 1wyzA 212 :TVKDWKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20346 # 1y4wA.132.335 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 132 :KM 1y4wA 355 :HM T0287 135 :IREMD 1y4wA 358 :LKTIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20348 # 2airB.132.123 read from T0287.t04.many.frag # found chain 2airB in template set Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 2airB 124 :SFAVRKRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20349 # 1s28A.132.54 read from T0287.t04.many.frag # found chain 1s28A in template set T0287 132 :KMSIREMDS 1s28A 55 :LSDIGVIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20350 # 1wthD.132.86 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIR 1wthD 87 :IYGCK T0287 138 :M 1wthD 93 :F T0287 140 :S 1wthD 95 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=20353 # 1msc.132.44 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 T0287 132 :KMSI 1msc 45 :TCSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20355 # 1gpqA.132.81 read from T0287.t04.many.frag # found chain 1gpqA in template set T0287 132 :KMSIREMDS 1gpqA 82 :FSTIDEKTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20356 # 1ddlA.132.130 read from T0287.t04.many.frag # found chain 1ddlA in template set T0287 132 :KMSIREMDS 1ddlA 131 :EANLTNLNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20357 # 1c8nA.132.205 read from T0287.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)R136 (1c8nA)T210 because G (3-10) conformation "forbidden" or filtered. T0287 132 :KMSI 1c8nA 206 :DVDV T0287 137 :EMDS 1c8nA 211 :RFDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20359 # 1mspA.132.70 read from T0287.t04.many.frag # found chain 1mspA in template set T0287 132 :KMSIREMDS 1mspA 71 :AVSCDTFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20360 # 1s3rA.132.261 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)R136 (1s3rA)D263 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSI 1s3rA 259 :TASV T0287 137 :EMDS 1s3rA 264 :SPNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20362 # 1ve2A.132.196 read from T0287.t04.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)D139 (1ve2A)P204 because C (cis) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1ve2A 197 :LGRVEDL T0287 140 :S 1ve2A 205 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=20364 # 2ayh.132.120 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M133 (2ayh)Y122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :K 2ayh 121 :N T0287 134 :SI 2ayh 123 :YT T0287 137 :EM 2ayh 126 :GV Number of specific fragments extracted= 3 number of extra gaps= 3 total=20367 # 1bco.133.287 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1bco)T543 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1bco 536 :DPQQLHS Number of specific fragments extracted= 1 number of extra gaps= 2 total=20368 # 1l6pA.133.84 read from T0287.t04.many.frag # found chain 1l6pA in training set T0287 133 :MSIREMDSQ 1l6pA 85 :VTINQASAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20369 # 2f15A.133.26 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 139 :DSQ 2f15A 100 :STK Number of specific fragments extracted= 2 number of extra gaps= 2 total=20371 # 1luzA.133.16 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREM 1luzA 18 :RVYEK Number of specific fragments extracted= 1 number of extra gaps= 2 total=20372 # 1h6lA.133.172 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSI 1h6lA 201 :VRA T0287 137 :EMD 1h6lA 205 :KMN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20374 # 2cy7A.133.310 read from T0287.t04.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)Q141 (2cy7A)S316 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 2cy7A 308 :MSIAELDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20375 # 1xt5A.133.74 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSI 1xt5A 75 :ESF T0287 137 :EMDSQ 1xt5A 79 :DFLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20377 # 1vajA.133.118 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREMDSQ 1vajA 120 :PPEERPRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20378 # 1y4wA.133.336 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 133 :M 1y4wA 356 :M T0287 135 :IREMD 1y4wA 358 :LKTIG T0287 141 :Q 1y4wA 364 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=20381 # 1hx6A.133.360 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)D139 (1hx6A)N368 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREM 1hx6A 362 :VNPKTV T0287 140 :S 1hx6A 369 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=20383 # 1s3rA.133.262 read from T0287.t04.many.frag # found chain 1s3rA in template set T0287 133 :MSIREMDSQ 1s3rA 260 :ASVDSPNSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20384 # 1te0A.133.309 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0287)Q141 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0287 133 :MS 1te0A 346 :VT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20386 # 1gnyA.133.109 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1gnyA 200 :CTIDEDD T0287 141 :Q 1gnyA 208 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=20388 # 1kq1A.133.33 read from T0287.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)E137 (1kq1A)E38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIR 1kq1A 34 :GVIE T0287 140 :SQ 1kq1A 41 :KY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20390 # 1c96A.133.311 read from T0287.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 133 :MSIREM 1c96A 313 :INLSEL T0287 141 :Q 1c96A 321 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=20392 # 2airB.133.124 read from T0287.t04.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIRE 2airB 125 :FAVRK T0287 139 :D 2airB 131 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=20394 # 1oygA.133.170 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 T0287 133 :MSIREMDS 1oygA 197 :VNVSASDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20395 # 1e2wA.133.193 read from T0287.t04.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)E137 (1e2wA)K198 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIR 1e2wA 194 :VSIE T0287 138 :MDSQ 1e2wA 199 :ANGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20397 # 1zpwX.133.63 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)D139 (1zpwX)A70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSIREM 1zpwX 64 :LRIYPV T0287 141 :Q 1zpwX 72 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=20399 # 1ng0A.133.183 read from T0287.t04.many.frag # found chain 1ng0A in template set T0287 133 :MSIREMDSQ 1ng0A 184 :LPCDEFSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20400 # 1pgl2.133.298 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. T0287 133 :MS 1pgl2 299 :FS T0287 136 :REMDSQ 1pgl2 302 :EEFLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20402 # 1b66A.133.124 read from T0287.t04.many.frag # found chain 1b66A in template set T0287 133 :MSIREMDSQ 1b66A 129 :VKVYETDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20403 # 1msc.133.45 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 T0287 133 :MSI 1msc 46 :CSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20405 # 1mkfA.133.319 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1mkfA 320 :LQMTSHD T0287 141 :Q 1mkfA 328 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20407 # 1obdA.133.219 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1obdA 220 :FGIDEKT T0287 141 :Q 1obdA 228 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=20409 # 1gpqA.133.82 read from T0287.t04.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1gpqA 83 :STIDEKT T0287 141 :Q 1gpqA 91 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=20411 # 2ayh.133.121 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M133 (2ayh)Y122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 2ayh 123 :YT T0287 138 :M 2ayh 127 :V T0287 140 :SQ 2ayh 129 :GH Number of specific fragments extracted= 3 number of extra gaps= 3 total=20414 # 1qexA.133.161 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREMD 1qexA 163 :SIESMF T0287 141 :Q 1qexA 170 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=20416 # 1wthD.133.87 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wthD)I104 T0287 133 :MSIREM 1wthD 88 :YGCKHF T0287 140 :S 1wthD 95 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20418 # 1s28A.133.55 read from T0287.t04.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s28A)N63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1s28A)L64 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSI 1s28A 56 :SDI T0287 137 :EMD 1s28A 60 :VID Number of specific fragments extracted= 2 number of extra gaps= 2 total=20420 # 1bco.134.288 read from T0287.t04.many.frag # found chain 1bco in template set T0287 134 :SIREMDSQI 1bco 536 :DPQQLHSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20421 # 1luzA.134.17 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMDS 1luzA 18 :RVYEKDY T0287 142 :I 1luzA 26 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20423 # 1h6lA.134.173 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SI 1h6lA 202 :RA T0287 137 :EMDS 1h6lA 205 :KMNS T0287 142 :I 1h6lA 210 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=20426 # 2f15A.134.27 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 139 :DSQI 2f15A 100 :STKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20428 # 1xt5A.134.75 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SI 1xt5A 76 :SF T0287 137 :EMDSQI 1xt5A 79 :DFLGRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20430 # 1oygA.134.171 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 134 :SIRE 1oygA 198 :NVSA T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20432 # 1zpwX.134.64 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREMD 1zpwX 65 :RIYPVA T0287 141 :QI 1zpwX 72 :QV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20434 # 1vajA.134.119 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 134 :SIREMDSQI 1vajA 120 :PPEERPRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20435 # 1hx6A.134.361 read from T0287.t04.many.frag # found chain 1hx6A in training set T0287 134 :SIREMDSQI 1hx6A 363 :NPKTVNQNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20436 # 1y4wA.134.337 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1y4wA 358 :LKTI T0287 140 :SQI 1y4wA 363 :SKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20438 # 1s3rA.134.263 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SIR 1s3rA 261 :SVD T0287 138 :MDSQI 1s3rA 265 :PNSPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20440 # 2cy7A.134.311 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 134 :SIREMDSQI 2cy7A 309 :SIAELDPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20441 # 1l6pA.134.85 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)E137 (1l6pA)Q89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIR 1l6pA 86 :TIN T0287 138 :MDS 1l6pA 90 :ASA T0287 142 :I 1l6pA 94 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=20444 # 1b66A.134.125 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1b66A 130 :KVYE T0287 139 :DSQI 1b66A 135 :DNNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20446 # 1obdA.134.220 read from T0287.t04.many.frag # found chain 1obdA in training set T0287 134 :SIREMDSQI 1obdA 221 :GIDEKTNEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20447 # 2airB.134.125 read from T0287.t04.many.frag # found chain 2airB in template set Warning: unaligning (T0287)E137 (2airB)K129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIR 2airB 126 :AVR T0287 139 :D 2airB 131 :A T0287 142 :I 2airB 134 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=20450 # 1mkfA.134.320 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREMD 1mkfA 321 :QMTSHD T0287 141 :QI 1mkfA 328 :VW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20452 # 1f00I.134.95 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 134 :SIREMDSQI 1f00I 753 :TLTIDDGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20453 # 1l4dB.134.73 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIR 1l4dB 99 :EVI T0287 138 :MDSQI 1l4dB 103 :FASDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20455 # 1gpqA.134.83 read from T0287.t04.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMD 1gpqA 84 :TIDEKT T0287 141 :QI 1gpqA 91 :QE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20457 # 1msc.134.46 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)M138 (1msc)S51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1msc)N55 T0287 134 :SI 1msc 47 :SV T0287 139 :D 1msc 52 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=20459 # 1kq1A.134.34 read from T0287.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 140 :SQI 1kq1A 41 :KYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20461 # 1thtA.134.156 read from T0287.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 134 :SIRE 1thtA 157 :PIDE T0287 140 :SQI 1thtA 163 :NDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20463 # 1olzA.134.325 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1olzA 326 :TV T0287 137 :EMDSQI 1olzA 329 :QSHTKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20465 # 1c96A.134.312 read from T0287.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 Warning: unaligning (T0287)Q141 (1c96A)H321 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREM 1c96A 314 :NLSEL T0287 142 :I 1c96A 322 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=20467 # 1hjrA.134.16 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :S 1hjrA 17 :V T0287 140 :SQI 1hjrA 23 :RQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20469 # 1k3bA.134.81 read from T0287.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREM 1k3bA 82 :KYKEE T0287 141 :QI 1k3bA 89 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20471 # 1tzlA.134.285 read from T0287.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :S 1tzlA 287 :V T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :I 1tzlA 295 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=20475 # 1gnyA.134.110 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)E137 (1gnyA)E204 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 1gnyA 201 :TID T0287 138 :MD 1gnyA 205 :DD T0287 141 :QI 1gnyA 208 :KF Number of specific fragments extracted= 3 number of extra gaps= 2 total=20478 # 2ayh.134.122 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SI 2ayh 123 :YT T0287 137 :EM 2ayh 126 :GV T0287 141 :QI 2ayh 130 :HE Number of specific fragments extracted= 3 number of extra gaps= 2 total=20481 # 1bco.135.289 read from T0287.t04.many.frag # found chain 1bco in template set T0287 135 :IREMDSQIE 1bco 537 :PQQLHSTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=20482 # 1xt5A.135.76 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :I 1xt5A 77 :F T0287 137 :EMD 1xt5A 79 :DFL T0287 141 :QIE 1xt5A 83 :RAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=20485 # 1h6lA.135.174 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1h6lA)K205 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :I 1h6lA 203 :A T0287 138 :MDSQIE 1h6lA 206 :MNSQTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20487 # 2f15A.135.28 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 135 :IR 2f15A 96 :FN T0287 139 :DSQIE 2f15A 100 :STKIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20489 # 1luzA.135.18 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMDS 1luzA 19 :VYEKDY T0287 142 :IE 1luzA 26 :LY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20491 # 1oygA.135.172 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)R136 (1oygA)S200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 135 :I 1oygA 199 :V T0287 137 :E 1oygA 201 :A T0287 139 :DS 1oygA 203 :DS T0287 143 :E 1oygA 207 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=20495 # 1zpwX.135.65 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)D139 (1zpwX)A70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1zpwX)E74 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREM 1zpwX 66 :IYPV T0287 141 :QI 1zpwX 72 :QV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20497 # 1hx6A.135.362 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1hx6A 364 :PKTVNQNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20498 # 1hjrA.135.17 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=20499 # 1vajA.135.120 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 135 :IREMDSQIE 1vajA 121 :PEERPRKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20500 # 1f00I.135.96 read from T0287.t04.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1f00I 754 :LTIDDGNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20501 # 1olzA.135.326 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 135 :I 1olzA 327 :V T0287 137 :EM 1olzA 329 :QS T0287 140 :SQIE 1olzA 332 :TKWV Number of specific fragments extracted= 3 number of extra gaps= 2 total=20504 # 1s3rA.135.264 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMD 1s3rA 262 :VDSPN T0287 141 :QIE 1s3rA 268 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20506 # 2d0oA.135.474 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)Q141 (2d0oA)S481 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2d0oA)Q483 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREMDS 2d0oA 475 :LRHEDG T0287 142 :I 2d0oA 482 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=20508 # 1l4dB.135.74 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1l4dB)A104 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IR 1l4dB 100 :VI T0287 138 :M 1l4dB 103 :F T0287 140 :SQIE 1l4dB 105 :SDAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=20511 # 1y4wA.135.338 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1y4wA 358 :LKTI T0287 140 :SQIE 1y4wA 363 :SKAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20513 # 1mkfA.135.321 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)Q141 (1mkfA)V328 because D (zeta) conformation "forbidden" or filtered. T0287 135 :IREMDS 1mkfA 322 :MTSHDG T0287 142 :IE 1mkfA 329 :WT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20515 # 1obdA.135.221 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 135 :IREMD 1obdA 222 :IDEKT T0287 141 :QIE 1obdA 228 :EII Number of specific fragments extracted= 2 number of extra gaps= 1 total=20517 # 1b66A.135.126 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IRE 1b66A 131 :VYE T0287 139 :DSQIE 1b66A 135 :DNNIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20519 # 1tzlA.135.286 read from T0287.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :IE 1tzlA 295 :IE Number of specific fragments extracted= 3 number of extra gaps= 3 total=20522 # 1obfO.135.221 read from T0287.t04.many.frag # found chain 1obfO in training set Warning: unaligning (T0287)S140 (1obfO)G227 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1obfO)N230 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMD 1obfO 222 :LPELD T0287 141 :QI 1obfO 228 :KL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20524 # 1k3bA.135.82 read from T0287.t04.many.frag # found chain 1k3bA in template set T0287 135 :IREMDSQIE 1k3bA 83 :YKEEGSKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20525 # 1thtA.135.157 read from T0287.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 Warning: unaligning (T0287)Q141 (1thtA)D164 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1thtA)D166 because D (zeta) conformation "forbidden" or filtered. T0287 135 :IRE 1thtA 158 :IDE T0287 140 :S 1thtA 163 :N T0287 142 :I 1thtA 165 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=20528 # 2c5qA.135.140 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)M138 (2c5qA)P144 because G (3-10) conformation "forbidden" or filtered. T0287 135 :IRE 2c5qA 141 :SCA T0287 139 :DSQIE 2c5qA 145 :KAVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20530 # 2ayh.135.123 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :I 2ayh 124 :T T0287 137 :EM 2ayh 126 :GV T0287 140 :SQIE 2ayh 129 :GHEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20533 # 2airB.135.126 read from T0287.t04.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IRE 2airB 127 :VRK T0287 139 :DS 2airB 131 :AN T0287 142 :IE 2airB 134 :IA Number of specific fragments extracted= 3 number of extra gaps= 2 total=20536 # 2cy7A.135.312 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 135 :IREMDSQIE 2cy7A 310 :IAELDPSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20537 # 1d3yA.135.98 read from T0287.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)D139 (1d3yA)G171 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)I142 (1d3yA)A174 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREM 1d3yA 167 :CTKL T0287 140 :SQ 1d3yA 172 :TG T0287 143 :E 1d3yA 175 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=20540 # 1xmtA.135.29 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. T0287 135 :IR 1xmtA 30 :MR T0287 138 :MDSQIE 1xmtA 33 :NGKVMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20542 # 1l6pA.135.86 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IREM 1l6pA 87 :INQA T0287 140 :S 1l6pA 92 :A T0287 142 :IE 1l6pA 94 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=20545 # 1bco.136.290 read from T0287.t04.many.frag # found chain 1bco in template set T0287 136 :REMDSQIEL 1bco 538 :QQLHSTVYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20546 # 1xt5A.136.77 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)D139 (1xt5A)L81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :REM 1xt5A 78 :GDF T0287 141 :QIEL 1xt5A 83 :RASV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20548 # 1oygA.136.173 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 136 :REMDS 1oygA 200 :SASDS T0287 143 :EL 1oygA 207 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20550 # 1h6lA.136.175 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMD 1h6lA 204 :FKMN T0287 142 :IEL 1h6lA 210 :TEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20552 # 1hjrA.136.18 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :S 1hjrA 23 :R T0287 142 :I 1hjrA 25 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=20554 # 2f15A.136.29 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 136 :R 2f15A 97 :N T0287 139 :DSQIEL 2f15A 100 :STKIPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20556 # 1luzA.136.19 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1luzA)Y27 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMD 1luzA 21 :EKD T0287 142 :I 1luzA 26 :L T0287 144 :L 1luzA 28 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=20559 # 1zpwX.136.66 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMD 1zpwX 67 :YPVA T0287 142 :IEL 1zpwX 73 :VEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20561 # 1f00I.136.97 read from T0287.t04.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1f00I 755 :TIDDGNI T0287 144 :L 1f00I 763 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=20563 # 1olzA.136.327 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1olzA 329 :QSHTKWVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20564 # 2d0oA.136.475 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)E137 (2d0oA)H477 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2d0oA)S481 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :R 2d0oA 476 :R T0287 138 :MD 2d0oA 478 :ED T0287 142 :IEL 2d0oA 482 :VQF Number of specific fragments extracted= 3 number of extra gaps= 2 total=20567 # 1obdA.136.222 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 136 :REMD 1obdA 223 :DEKT T0287 141 :QIEL 1obdA 228 :EIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20569 # 2c5qA.136.141 read from T0287.t04.many.frag # found chain 2c5qA in template set T0287 136 :REMDSQIEL 2c5qA 142 :CAPKAVVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20570 # 1hx6A.136.363 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)E137 (1hx6A)T366 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :R 1hx6A 365 :K T0287 138 :MDSQI 1hx6A 367 :VNQNA T0287 144 :L 1hx6A 373 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=20573 # 1mkfA.136.322 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :REMD 1mkfA 323 :TSHD T0287 141 :QIEL 1mkfA 328 :VWTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20575 # 1vajA.136.121 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 136 :REMDSQIEL 1vajA 122 :EERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20576 # 1s3rA.136.265 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)M138 (1s3rA)P265 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :RE 1s3rA 263 :DS T0287 139 :DSQIEL 1s3rA 266 :NSPSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20578 # 1l4dB.136.75 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :R 1l4dB 101 :I T0287 138 :MDSQIEL 1l4dB 103 :FASDATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20580 # 1r6wA.136.12 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)E137 (1r6wA)P12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 136 :R 1r6wA 11 :I T0287 138 :MDSQIE 1r6wA 13 :MDAGVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20582 # 1b66A.136.127 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :RE 1b66A 132 :YE T0287 139 :DSQIEL 1b66A 135 :DNNIVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20584 # 1k3bA.136.83 read from T0287.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 136 :REM 1k3bA 84 :KEE T0287 140 :SQIEL 1k3bA 88 :SKVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20586 # 1ru3A.136.336 read from T0287.t04.many.frag # found chain 1ru3A in template set T0287 136 :REMDSQIEL 1ru3A 337 :RKGDMHVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20587 # 2ayh.136.124 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :R 2ayh 125 :N T0287 138 :MDSQIEL 2ayh 127 :VGGHEKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20589 # 1rv9A.136.187 read from T0287.t04.many.frag # found chain 1rv9A in training set T0287 136 :REMDSQIEL 1rv9A 188 :PEAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20590 # 1tzlA.136.287 read from T0287.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1tzlA)S297 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :SQIE 1tzlA 293 :SEIE Number of specific fragments extracted= 2 number of extra gaps= 3 total=20592 # 1q67A.136.184 read from T0287.t04.many.frag # found chain 1q67A in template set T0287 136 :REMDSQIEL 1q67A 185 :EVKDELVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=20593 # 1xmtA.136.30 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :R 1xmtA 31 :R T0287 140 :SQIEL 1xmtA 35 :KVMDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20595 # 1y4wA.136.339 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 136 :REM 1y4wA 359 :KTI T0287 141 :QIEL 1y4wA 364 :KATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20597 # 1uekA.136.41 read from T0287.t04.many.frag # found chain 1uekA in training set Warning: unaligning (T0287)E137 (1uekA)P43 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :R 1uekA 42 :E T0287 138 :MDSQIEL 1uekA 44 :VSSGLHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20599 # 1d3yA.136.99 read from T0287.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)I142 (1d3yA)A174 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :REMDSQ 1d3yA 168 :TKLGTG T0287 143 :EL 1d3yA 175 :YN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20601 # 1bco.137.291 read from T0287.t04.many.frag # found chain 1bco in template set T0287 137 :EMDSQIELY 1bco 539 :QLHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=20602 # 1hjrA.137.19 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :S 1hjrA 23 :R T0287 142 :I 1hjrA 25 :L T0287 145 :Y 1hjrA 28 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=20605 # 1xt5A.137.78 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)D139 (1xt5A)L81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EM 1xt5A 79 :DF T0287 141 :QIELY 1xt5A 83 :RASVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20607 # 2c5qA.137.142 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 2c5qA 143 :APKAVVKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20608 # 1f00I.137.98 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 137 :EMDSQIELY 1f00I 756 :IDDGNIEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20609 # 2d0oA.137.476 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EMD 2d0oA 477 :HED T0287 141 :QIELY 2d0oA 481 :SVQFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20611 # 1h6lA.137.176 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)E137 (1h6lA)K205 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MD 1h6lA 206 :MN T0287 141 :QIELY 1h6lA 209 :QTEGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=20613 # 1oygA.137.174 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 137 :E 1oygA 201 :A T0287 139 :DS 1oygA 203 :DS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 3 number of extra gaps= 2 total=20616 # 1r6wA.137.13 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)E137 (1r6wA)P12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 138 :MDSQIE 1r6wA 13 :MDAGVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20617 # 1olzA.137.328 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)S140 (1olzA)T332 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EMD 1olzA 329 :QSH T0287 141 :QIELY 1olzA 333 :KWVRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20619 # 1zpwX.137.67 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EMD 1zpwX 68 :PVA T0287 141 :QIELY 1zpwX 72 :QVEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20621 # 2f15A.137.30 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 137 :E 2f15A 98 :N T0287 139 :DSQIELY 2f15A 100 :STKIPLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20623 # 1obdA.137.223 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 137 :EMD 1obdA 224 :EKT T0287 141 :QIELY 1obdA 228 :EIILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20625 # 1rv9A.137.188 read from T0287.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)E143 (1rv9A)E195 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMDSQI 1rv9A 189 :EAATAF T0287 144 :LY 1rv9A 196 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20627 # 1luzA.137.20 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)E137 (1luzA)E21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :M 1luzA 22 :K T0287 140 :S 1luzA 24 :Y T0287 142 :IELY 1luzA 26 :LYIY Number of specific fragments extracted= 3 number of extra gaps= 3 total=20630 # 1l4dB.137.76 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1l4dB 103 :FASDATIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20631 # 1s3rA.137.266 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MD 1s3rA 265 :PN T0287 141 :QIELY 1s3rA 268 :PSALF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20633 # 1hx6A.137.364 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDSQI 1hx6A 366 :TVNQNA T0287 144 :LY 1hx6A 373 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20635 # 1ru3A.137.337 read from T0287.t04.many.frag # found chain 1ru3A in template set T0287 137 :EMDSQIELY 1ru3A 338 :KGDMHVEFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20636 # 1mkfA.137.323 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EMD 1mkfA 324 :SHD T0287 141 :QIELY 1mkfA 328 :VWTST Number of specific fragments extracted= 2 number of extra gaps= 1 total=20638 # 1b66A.137.128 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :E 1b66A 133 :E T0287 139 :DSQIELY 1b66A 135 :DNNIVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20640 # 1xmtA.137.31 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :M 1xmtA 33 :N T0287 140 :SQIELY 1xmtA 35 :KVMDLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20642 # 1k3bA.137.84 read from T0287.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EMD 1k3bA 85 :EEG T0287 141 :QIELY 1k3bA 89 :KVTTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20644 # 2ayh.137.125 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 2ayh 126 :GV T0287 140 :SQIELY 2ayh 129 :GHEKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20646 # 1d3yA.137.100 read from T0287.t04.many.frag # found chain 1d3yA in template set T0287 137 :EMDSQIELY 1d3yA 169 :KLGTGAYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20647 # 1wubA.137.81 read from T0287.t04.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)Q141 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMDS 1wubA 82 :FVST T0287 142 :IELY 1wubA 87 :IEPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20649 # 1jiwI.137.62 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1jiwI 63 :PTPA T0287 142 :IELY 1jiwI 68 :IALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20651 # 1tzlA.137.288 read from T0287.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)L144 (1tzlA)S297 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDSQIE 1tzlA 290 :ALNSEIE T0287 145 :Y 1tzlA 298 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20653 # 1vajA.137.122 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 137 :EMDSQIELY 1vajA 123 :ERPRKIKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20654 # 1jiwI.137.9 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)D139 (1jiwI)A12 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EM 1jiwI 10 :DL T0287 140 :SQIELY 1jiwI 13 :GQWTLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20656 # 1bco.138.292 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDSQI 1bco 540 :LHSTV T0287 144 :LYG 1bco 546 :CYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20658 # 2c5qA.138.143 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2c5qA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDSQIEL 2c5qA 144 :PKAVVKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20659 # 1hjrA.138.20 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)G146 (1hjrA)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :Y 1hjrA 28 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=20661 # 2d0oA.138.477 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 2d0oA 478 :ED T0287 141 :QIELYG 2d0oA 481 :SVQFFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20663 # 1r6wA.138.14 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1r6wA)V18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 138 :MDS 1r6wA 13 :MDA T0287 142 :I 1r6wA 17 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=20665 # 1xt5A.138.79 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)M138 (1xt5A)F80 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1xt5A 81 :LGRASVAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20666 # 1f00I.138.99 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 138 :MDSQIELYG 1f00I 757 :DDGNIEIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20667 # 1olzA.138.329 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)Q141 (1olzA)K333 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 138 :MDS 1olzA 330 :SHT T0287 142 :IELY 1olzA 334 :WVRY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20669 # 1oygA.138.175 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 139 :DS 1oygA 203 :DS T0287 143 :ELYG 1oygA 207 :NING Number of specific fragments extracted= 2 number of extra gaps= 2 total=20671 # 2f15A.138.31 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f15A 100 :STKIPLI Number of specific fragments extracted= 1 number of extra gaps= 2 total=20672 # 1rv9A.138.189 read from T0287.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)G146 (1rv9A)G198 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1rv9A 190 :AATAFEGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20673 # 1zpwX.138.68 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)G146 (1zpwX)G77 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1zpwX 69 :VAGQVEVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20674 # 1h6lA.138.177 read from T0287.t04.many.frag # found chain 1h6lA in training set T0287 138 :MDSQIELYG 1h6lA 206 :MNSQTEGMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20675 # 1obdA.138.224 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1obdA)V232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1obdA)D233 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MD 1obdA 225 :KT T0287 141 :QIEL 1obdA 228 :EIIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20677 # 1s3rA.138.267 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1s3rA 265 :PNSPSALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20678 # 1ru3A.138.338 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)E143 (1ru3A)E344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDSQI 1ru3A 339 :GDMHV T0287 144 :L 1ru3A 345 :F T0287 146 :G 1ru3A 347 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=20681 # 1luzA.138.21 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :M 1luzA 22 :K T0287 141 :QIELYG 1luzA 25 :ALYIYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20683 # 1l4dB.138.77 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)G146 (1l4dB)D111 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1l4dB 103 :FASDATIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20684 # 1ok7A.138.37 read from T0287.t04.many.frag # found chain 1ok7A in training set T0287 138 :MDSQIELYG 1ok7A 38 :ADGTLSLTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20685 # 1jiwI.138.63 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)A66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MD 1jiwI 64 :TP T0287 142 :IELYG 1jiwI 68 :IALLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20687 # 1xmtA.138.32 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DSQI 1xmtA 34 :GKVM T0287 144 :LY 1xmtA 39 :LV Number of specific fragments extracted= 2 number of extra gaps= 3 total=20689 # 2ayh.138.126 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M138 (2ayh)V127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 2ayh 129 :GHEKVI Number of specific fragments extracted= 1 number of extra gaps= 2 total=20690 # 2bjfA.138.158 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 2bjfA 159 :TKE T0287 142 :IELY 2bjfA 163 :LNVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20692 # 1hx6A.138.365 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)S140 (1hx6A)Q369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hx6A)M375 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MD 1hx6A 367 :VN T0287 142 :I 1hx6A 371 :A T0287 144 :LY 1hx6A 373 :LL Number of specific fragments extracted= 3 number of extra gaps= 3 total=20695 # 1b66A.138.129 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1b66A 135 :DNNIVVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20696 # 1wubA.138.82 read from T0287.t04.many.frag # found chain 1wubA in training set T0287 138 :MDSQIELYG 1wubA 83 :VSTQIEPLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20697 # 2f6eA.138.16 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. T0287 138 :MD 2f6eA 18 :ID T0287 141 :QIELYG 2f6eA 21 :KNFYFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20699 # 1jiwI.138.10 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)M138 (1jiwI)L11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1jiwI 12 :AGQWTLQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=20700 # 1ijqA.138.237 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)M138 (1ijqA)T614 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1ijqA)G615 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL Number of specific fragments extracted= 2 number of extra gaps= 3 total=20702 # 1k3bA.138.85 read from T0287.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)G146 (1k3bA)C94 because G (3-10) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1k3bA 86 :EGSKVTTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=20703 # 2c5qA.139.144 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIEL 2c5qA 145 :KAVVKA T0287 146 :GT 2c5qA 152 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20705 # 1bco.139.293 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1bco 541 :HSTVYCY T0287 147 :T 1bco 549 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20707 # 2d0oA.139.478 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 139 :D 2d0oA 479 :D T0287 141 :QIELYGT 2d0oA 481 :SVQFFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=20709 # 1hjrA.139.21 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1hjrA)R23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 141 :QI 1hjrA 24 :QL T0287 145 :YGT 1hjrA 28 :LGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20711 # 1olzA.139.330 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1olzA)K333 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 140 :S 1olzA 332 :T T0287 142 :IELY 1olzA 334 :WVRY T0287 147 :T 1olzA 339 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=20714 # 1r6wA.139.15 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 139 :DS 1r6wA 14 :DA T0287 142 :IE 1r6wA 17 :VV T0287 147 :T 1r6wA 22 :R Number of specific fragments extracted= 3 number of extra gaps= 1 total=20717 Number of alignments=1033 # 1f00I.139.100 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 139 :DSQIELYGT 1f00I 758 :DGNIEIVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20718 # 1rv9A.139.190 read from T0287.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1rv9A 191 :ATAFEGIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=20719 # 1ru3A.139.339 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :DSQIEL 1ru3A 340 :DMHVEF T0287 146 :GT 1ru3A 347 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20721 # 1ok7A.139.38 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)D139 (1ok7A)D39 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :SQIELY 1ok7A 40 :GTLSLT T0287 147 :T 1ok7A 47 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=20723 # 1s3rA.139.268 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :D 1s3rA 266 :N T0287 141 :QIELYGT 1s3rA 268 :PSALFGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20725 # 1xt5A.139.80 read from T0287.t04.many.frag # found chain 1xt5A in template set T0287 139 :DSQIELYGT 1xt5A 81 :LGRASVANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20726 # 1jiwI.139.64 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 1jiwI 65 :PA T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :T 1jiwI 73 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=20729 # 1oygA.139.176 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)E143 (1oygA)N207 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DS 1oygA 203 :DS T0287 144 :LYGT 1oygA 208 :INGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20731 # 2f15A.139.32 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f15A 100 :STKIPLI T0287 147 :T 2f15A 108 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=20733 # 1zpwX.139.69 read from T0287.t04.many.frag # found chain 1zpwX in template set T0287 139 :DSQIELYGT 1zpwX 70 :AGQVEVLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20734 # 1wubA.139.83 read from T0287.t04.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)D139 (1wubA)S84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIELY 1wubA 85 :TQIEPL T0287 147 :T 1wubA 92 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=20736 # 1ijqA.139.238 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. T0287 139 :DS 1ijqA 615 :GS T0287 142 :IELYGT 1ijqA 618 :VNLLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20738 # 1xmtA.139.33 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)S140 (1xmtA)K35 because G (3-10) conformation "forbidden" or filtered. T0287 139 :D 1xmtA 34 :G T0287 141 :QIELYGT 1xmtA 36 :VMDLVHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20740 # 1l4dB.139.78 read from T0287.t04.many.frag # found chain 1l4dB in template set T0287 139 :DSQIELYGT 1l4dB 104 :ASDATITDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20741 # 1hbnB.139.3 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)Q141 (1hbnB)K7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 1hbnB 5 :ED T0287 142 :I 1hbnB 8 :V T0287 144 :LY 1hbnB 10 :LY T0287 147 :T 1hbnB 13 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=20745 # 2bjfA.139.159 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 2bjfA 160 :KE T0287 142 :IELY 2bjfA 163 :LNVF T0287 147 :T 2bjfA 168 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=20748 # 1obdA.139.225 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)Q141 (1obdA)E228 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DS 1obdA 226 :TN T0287 142 :IELYGT 1obdA 229 :IILVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20750 # 1luzA.139.22 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1luzA)L30 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 1luzA 23 :DY T0287 142 :IELY 1luzA 26 :LYIY T0287 147 :T 1luzA 31 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=20753 # 1gd0A.139.43 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIEL 1gd0A 44 :DQLMAF T0287 146 :GT 1gd0A 51 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20755 # 1h6lA.139.178 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :D 1h6lA 207 :N T0287 142 :IELYGT 1h6lA 210 :TEGMAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20757 # 2f6eA.139.17 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)D139 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELY 2f6eA 20 :NKNFYF Number of specific fragments extracted= 1 number of extra gaps= 2 total=20758 # 1jiwI.139.11 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)D139 (1jiwI)A12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1jiwI)Q14 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELYGT 1jiwI 15 :WTLQQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20759 # 1n9eA.139.742 read from T0287.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)Y145 (1n9eA)Y749 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIEL 1n9eA 743 :ESNWEF T0287 146 :GT 1n9eA 750 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20761 # 2ayh.139.127 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :D 2ayh 128 :G T0287 141 :QIELY 2ayh 130 :HEKVI T0287 147 :T 2ayh 136 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=20764 # 2c5qA.140.145 read from T0287.t04.many.frag # found chain 2c5qA in template set T0287 140 :SQIELYGTN 2c5qA 146 :AVVKAVGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20765 # 2d0oA.140.479 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 2d0oA 481 :SVQFFSTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20766 # 1ru3A.140.340 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIEL 1ru3A 341 :MHVEF T0287 146 :GTN 1ru3A 347 :GGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20768 # 1bco.140.294 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 1bco 542 :STVYCY T0287 147 :TN 1bco 549 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20770 # 1olzA.140.331 read from T0287.t04.many.frag # found chain 1olzA in template set T0287 140 :SQIELYGTN 1olzA 332 :TKWVRYNGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20771 # 1rv9A.140.191 read from T0287.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELYG 1rv9A 192 :TAFEGIG T0287 148 :N 1rv9A 200 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=20773 # 1hjrA.140.22 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)G146 (1hjrA)G29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :Y 1hjrA 28 :L T0287 147 :T 1hjrA 30 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=20776 # 1jiwI.140.65 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1jiwI)A69 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :S 1jiwI 66 :A T0287 142 :I 1jiwI 68 :I T0287 144 :LYGTN 1jiwI 70 :LLERG Number of specific fragments extracted= 3 number of extra gaps= 2 total=20779 # 1r6wA.140.16 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 140 :S 1r6wA 15 :A T0287 142 :IE 1r6wA 17 :VV T0287 147 :TN 1r6wA 22 :RR Number of specific fragments extracted= 3 number of extra gaps= 1 total=20782 Number of alignments=1034 # 1ok7A.140.39 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :SQIELY 1ok7A 40 :GTLSLT T0287 147 :TN 1ok7A 47 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20784 # 1f00I.140.101 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 140 :SQIELYGTN 1f00I 759 :GNIEIVGTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20785 # 1s3rA.140.269 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1s3rA 267 :SPSALFGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20786 # 1xt5A.140.81 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xt5A)S85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. T0287 141 :QI 1xt5A 83 :RA T0287 144 :LY 1xt5A 86 :VA T0287 147 :TN 1xt5A 89 :LA Number of specific fragments extracted= 3 number of extra gaps= 3 total=20789 # 1xmtA.140.34 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)Q141 (1xmtA)V36 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :S 1xmtA 35 :K T0287 142 :IELYGTN 1xmtA 37 :MDLVHTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20791 # 2f15A.140.33 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 2f15A 101 :TKIPLIKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20792 # 1gd0A.140.44 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 1gd0A 45 :QLMAF T0287 146 :GTN 1gd0A 51 :GSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20794 # 1hbnB.140.4 read from T0287.t04.many.frag # found chain 1hbnB in training set T0287 140 :SQIELYGTN 1hbnB 6 :DKVDLYDDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20795 # 1wubA.140.84 read from T0287.t04.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)S140 (1wubA)T85 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1wubA 86 :QIEPLGGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20796 # 2bjfA.140.160 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :S 2bjfA 161 :E T0287 142 :IELY 2bjfA 163 :LNVF T0287 147 :TN 2bjfA 168 :NN Number of specific fragments extracted= 3 number of extra gaps= 2 total=20799 # 1xmkA.140.53 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)S140 (1xmkA)G341 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 T0287 141 :QIELYG 1xmkA 342 :DVYRQG Number of specific fragments extracted= 1 number of extra gaps= 2 total=20800 # 1oygA.140.177 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)N148 (1oygA)E212 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1oygA 204 :S T0287 143 :ELYGT 1oygA 207 :NINGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20802 # 1ijqA.140.239 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ijqA)E623 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL T0287 148 :N 1ijqA 624 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=20805 # 1acc.140.537 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1acc)D546 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQI 1acc 538 :GNL T0287 144 :LYGT 1acc 542 :YQGK Number of specific fragments extracted= 2 number of extra gaps= 2 total=20807 # 1zpwX.140.70 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1zpwX)G79 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1zpwX 72 :QVEVLGV Number of specific fragments extracted= 1 number of extra gaps= 2 total=20808 # 1lpbA.140.24 read from T0287.t04.many.frag # found chain 1lpbA in template set T0287 140 :SQIELYGTN 1lpbA 25 :SNCCQHDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20809 # 1jiwI.140.12 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1jiwI)E21 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1jiwI 14 :QWTLQQD Number of specific fragments extracted= 1 number of extra gaps= 2 total=20810 # 1w8kA.140.311 read from T0287.t04.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)N148 (1w8kA)K360 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1w8kA 352 :KKCYIFNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20811 # 1n9eA.140.743 read from T0287.t04.many.frag # found chain 1n9eA in training set T0287 140 :SQIELYGTN 1n9eA 744 :SNWEFYGND Number of specific fragments extracted= 1 number of extra gaps= 0 total=20812 # 2f6eA.140.18 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELY 2f6eA 21 :KNFYF Number of specific fragments extracted= 1 number of extra gaps= 2 total=20813 # 1ir6A.140.346 read from T0287.t04.many.frag # found chain 1ir6A in template set Warning: unaligning (T0287)L144 (1ir6A)R390 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQIE 1ir6A 386 :DLLL T0287 145 :YGTN 1ir6A 391 :YGGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20815 # 2c5qA.141.146 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 141 :QIELYGT 2c5qA 147 :VVKAVGT T0287 149 :L 2c5qA 155 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20817 # 2d0oA.141.480 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)N148 (2d0oA)P488 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELYGT 2d0oA 481 :SVQFFST T0287 149 :L 2d0oA 489 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20819 # 1ru3A.141.341 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)E143 (1ru3A)E344 because E (beta_S) conformation "forbidden" or filtered. T0287 141 :QI 1ru3A 342 :HV T0287 144 :LYGTNL 1ru3A 345 :FGGGKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20821 # 1bco.141.295 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1bco 543 :TVYCYTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20822 # 1jiwI.141.66 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG Number of specific fragments extracted= 2 number of extra gaps= 3 total=20824 # 1ok7A.141.40 read from T0287.t04.many.frag # found chain 1ok7A in training set T0287 141 :QIELYGTNL 1ok7A 41 :TLSLTGTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20825 # 1olzA.141.332 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELY 1olzA 333 :KWVRY T0287 147 :TNL 1olzA 339 :GPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20827 # 1xmkA.141.54 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)G146 (1xmkA)G347 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 141 :QIELY 1xmkA 342 :DVYRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=20828 # 1gd0A.141.45 read from T0287.t04.many.frag # found chain 1gd0A in training set T0287 141 :QIELYGTNL 1gd0A 46 :LMAFGGSSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20829 # 2bjfA.141.161 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2bjfA)N164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :I 2bjfA 163 :L T0287 144 :LY 2bjfA 165 :VF T0287 147 :TNL 2bjfA 168 :NNI Number of specific fragments extracted= 3 number of extra gaps= 3 total=20832 # 1lpbA.141.25 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)E143 (1lpbA)C28 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QI 1lpbA 26 :NC T0287 144 :LYGTNL 1lpbA 29 :QHDTIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20834 # 1s3rA.141.270 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1s3rA 268 :PSALFGS T0287 149 :L 1s3rA 276 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=20836 # 1r6wA.141.17 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 141 :QIE 1r6wA 16 :GVV T0287 147 :TNL 1r6wA 22 :RRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=20838 Number of alignments=1035 # 1xmtA.141.35 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)G146 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. T0287 141 :QIELY 1xmtA 36 :VMDLV T0287 147 :TNL 1xmtA 42 :TYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20840 # 1pjxA.141.247 read from T0287.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1pjxA)I249 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0287 143 :ELYG 1pjxA 250 :EVFG T0287 149 :L 1pjxA 256 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=20842 # 1acc.141.538 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 141 :QI 1acc 539 :NL T0287 144 :L 1acc 542 :Y T0287 146 :GTNL 1acc 544 :GKDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=20845 # 2f15A.141.34 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 T0287 141 :QIELY 2f15A 102 :KIPLI T0287 147 :TN 2f15A 108 :SH Number of specific fragments extracted= 2 number of extra gaps= 2 total=20847 # 1hbnB.141.5 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1hbnB)R14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1hbnB)G15 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QI 1hbnB 7 :KV T0287 144 :LY 1hbnB 10 :LY T0287 147 :T 1hbnB 13 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=20850 # 1se8A.141.104 read from T0287.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)Q141 (1se8A)R105 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1se8A 106 :MEQLGTQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20851 # 1jiwI.141.13 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELY 1jiwI 14 :QWTLQ T0287 148 :NL 1jiwI 21 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20853 # 1f00I.141.102 read from T0287.t04.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)G146 (1f00I)G765 because H (helix) conformation "forbidden" or filtered. T0287 141 :QIELY 1f00I 760 :NIEIV T0287 147 :TNL 1f00I 766 :TGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20855 # 1rv9A.141.192 read from T0287.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1rv9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYG 1rv9A 193 :AFEGIG T0287 149 :L 1rv9A 201 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=20857 # 1xt5A.141.82 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)L149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xt5A)P92 T0287 141 :QIELYGTN 1xt5A 83 :RASVANLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20858 # 1w8kA.141.312 read from T0287.t04.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)Y145 (1w8kA)F357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1w8kA)N358 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIEL 1w8kA 353 :KCYI T0287 147 :TNL 1w8kA 359 :TKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20860 # 1hjrA.141.23 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)G146 (1hjrA)G29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1hjrA 24 :QL T0287 145 :Y 1hjrA 28 :L T0287 147 :T 1hjrA 30 :S T0287 149 :L 1hjrA 32 :C Number of specific fragments extracted= 4 number of extra gaps= 3 total=20864 # 1ijqA.141.240 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Y145 (1ijqA)L621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QIEL 1ijqA 617 :DVNL T0287 147 :TNL 1ijqA 623 :ENL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20866 # 1v05A.141.39 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 141 :QIELYGTNL 1v05A 2669 :MVGVHGPKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20867 # 1gxrA.141.246 read from T0287.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0287)N148 (1gxrA)N687 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1gxrA 680 :NVEVLHV T0287 149 :L 1gxrA 688 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=20869 # 1ttuA.141.227 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ttuA)T420 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QI 1ttuA 414 :AF T0287 144 :LYG 1ttuA 417 :ASS T0287 148 :NL 1ttuA 421 :KW Number of specific fragments extracted= 3 number of extra gaps= 2 total=20872 # 1txvA.141.265 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1txvA 266 :AVEILDSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=20873 # 1bco.142.296 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1bco 544 :VYCY T0287 147 :TN 1bco 549 :LD T0287 150 :P 1bco 552 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=20876 # 2c5qA.142.147 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)G146 (2c5qA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELY 2c5qA 148 :VKAV T0287 147 :TNLP 2c5qA 153 :TNVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20878 # 1ok7A.142.41 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1ok7A 42 :LSLTGTD T0287 150 :P 1ok7A 50 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=20880 # 1ru3A.142.342 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IEL 1ru3A 343 :VEF T0287 146 :GTNLP 1ru3A 347 :GGKTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20882 # 1jiwI.142.67 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG T0287 150 :P 1jiwI 76 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=20885 # 1xmkA.142.55 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 142 :IELYG 1xmkA 343 :VYRQG T0287 150 :P 1xmkA 351 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20887 # 2d0oA.142.481 read from T0287.t04.many.frag # found chain 2d0oA in template set T0287 142 :IELYGTNLP 2d0oA 482 :VQFFSTPLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20888 # 1gttA.142.188 read from T0287.t04.many.frag # found chain 1gttA in training set T0287 142 :IELYGTNLP 1gttA 189 :VRVLAEGFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20889 # 1lpbA.142.26 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1lpbA 27 :CCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20890 # 1gd0A.142.46 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 142 :IEL 1gd0A 47 :MAF T0287 146 :GTNLP 1gd0A 51 :GSSEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20892 # 1jiwI.142.14 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 15 :WTLQ T0287 148 :NLP 1jiwI 21 :EAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20894 # 1pjxA.142.248 read from T0287.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG Number of specific fragments extracted= 1 number of extra gaps= 2 total=20895 # 1txvA.142.266 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1txvA 267 :VEILDSY T0287 150 :P 1txvA 275 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=20897 # 2f15A.142.35 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E143 (2f15A)P104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 142 :I 2f15A 103 :I T0287 144 :LYGTN 2f15A 105 :LIKSH Number of specific fragments extracted= 2 number of extra gaps= 2 total=20899 # 1v05A.142.40 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 142 :IELYGTNLP 1v05A 2670 :VGVHGPKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20900 # 1acc.142.539 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 142 :I 1acc 540 :L T0287 144 :L 1acc 542 :Y T0287 146 :GTNLP 1acc 544 :GKDIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=20903 # 2bjfA.142.162 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)P150 (2bjfA)G171 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 2bjfA 163 :LNVFDNNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20904 # 1nqeA.142.549 read from T0287.t04.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)G146 (1nqeA)P554 because N (gamma') conformation "forbidden" or filtered. T0287 142 :IELY 1nqeA 550 :AVAY T0287 147 :TNLP 1nqeA 555 :VTSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20906 # 1ijqA.142.241 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ijqA)L626 because D (zeta) conformation "forbidden" or filtered. T0287 142 :IELY 1ijqA 618 :VNLL T0287 147 :TNL 1ijqA 623 :ENL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20908 # 1olzA.142.333 read from T0287.t04.many.frag # found chain 1olzA in template set T0287 142 :IELYGTNLP 1olzA 334 :WVRYNGPVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20909 # 1k3sA.142.69 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELYGT 1k3sA 70 :IGADAD T0287 149 :L 1k3sA 77 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=20911 # 1gxrA.142.247 read from T0287.t04.many.frag # found chain 1gxrA in training set T0287 142 :IELYGTNLP 1gxrA 681 :VEVLHVNKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20912 # 1s3rA.142.271 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1s3rA)T277 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELY 1s3rA 269 :SALF T0287 147 :T 1s3rA 274 :S T0287 149 :L 1s3rA 276 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=20915 # 1ttuA.142.228 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1ttuA 415 :F T0287 144 :LYGTNL 1ttuA 417 :ASSTKW Number of specific fragments extracted= 2 number of extra gaps= 2 total=20917 # 1hbnB.142.6 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1hbnB)G15 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1hbnB 8 :VDLY T0287 147 :TN 1hbnB 13 :DR T0287 150 :P 1hbnB 16 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=20920 # 1vh5A.142.117 read from T0287.t04.many.frag # found chain 1vh5A in training set Warning: unaligning (T0287)E143 (1vh5A)E117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1vh5A)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :I 1vh5A 116 :I T0287 144 :LYGTN 1vh5A 118 :IFDEK T0287 150 :P 1vh5A 124 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=20923 # 1se8A.142.105 read from T0287.t04.many.frag # found chain 1se8A in training set T0287 142 :IELYGTNLP 1se8A 106 :MEQLGTQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20924 # 1vgjA.142.77 read from T0287.t04.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)I78 Warning: unaligning (T0287)E143 (1vgjA)G79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 1vgjA 80 :VF T0287 147 :T 1vgjA 83 :N Number of specific fragments extracted= 2 number of extra gaps= 3 total=20926 # 1yn3A.142.7 read from T0287.t04.many.frag # found chain 1yn3A in training set T0287 142 :IELYGTNLP 1yn3A 164 :ITVNGTSQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20927 # 1xi1A.142.291 read from T0287.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0287)E143 (1xi1A)E293 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1xi1A 292 :F T0287 144 :LYGTNLP 1xi1A 294 :LKEGYIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20929 # 1ru3A.143.343 read from T0287.t04.many.frag # found chain 1ru3A in template set T0287 143 :ELYGTNLPL 1ru3A 344 :EFGGGKTPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20930 # 1xmkA.143.56 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYG 1xmkA 344 :YRQG T0287 150 :PL 1xmkA 351 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20932 # 1ok7A.143.42 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELY 1ok7A 43 :SLT T0287 147 :TN 1ok7A 47 :TD T0287 150 :PL 1ok7A 50 :EM Number of specific fragments extracted= 3 number of extra gaps= 2 total=20935 # 1bco.143.297 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1bco 545 :YCYTLD T0287 150 :PL 1bco 552 :RF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20937 # 2c5qA.143.148 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 143 :ELYGT 2c5qA 149 :KAVGT T0287 149 :LPL 2c5qA 155 :VQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20939 # 1gd0A.143.47 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :EL 1gd0A 48 :AF T0287 146 :GTNLP 1gd0A 51 :GSSEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=20941 # 1gttA.143.189 read from T0287.t04.many.frag # found chain 1gttA in training set T0287 143 :ELYGTNLPL 1gttA 190 :RVLAEGFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20942 # 1lpbA.143.27 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1lpbA 28 :CQHDTIL T0287 151 :L 1lpbA 36 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20944 # 1v05A.143.41 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 143 :ELYGTNLPL 1v05A 2671 :GVHGPKTPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20945 # 1jiwI.143.15 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1jiwI 16 :TLQQ T0287 148 :NLPL 1jiwI 21 :EAPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20947 # 1jiwI.143.68 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1jiwI 69 :ALLERG T0287 150 :PL 1jiwI 76 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20949 # 2f15A.143.36 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 143 :ELYGTN 2f15A 104 :PLIKSH T0287 151 :L 2f15A 112 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=20951 # 2d0oA.143.482 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)N148 (2d0oA)P488 because P (beta_P) conformation "forbidden" or filtered. T0287 143 :ELYGT 2d0oA 483 :QFFST T0287 149 :LPL 2d0oA 489 :LPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20953 # 1acc.143.540 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)L144 (1acc)Y542 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 143 :E 1acc 541 :Q T0287 146 :GTNLPL 1acc 544 :GKDITE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20955 # 1ttuA.143.229 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELY 1ttuA 416 :HAS T0287 147 :TNL 1ttuA 420 :TKW T0287 151 :L 1ttuA 424 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=20958 # 1k3sA.143.70 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)E143 (1k3sA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGT 1k3sA 72 :ADAD T0287 149 :L 1k3sA 77 :T T0287 151 :L 1k3sA 79 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=20961 # 1vgjA.143.78 read from T0287.t04.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)E143 (1vgjA)G79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 1vgjA 80 :VF T0287 147 :T 1vgjA 83 :N T0287 151 :L 1vgjA 87 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=20964 # 2evrA.143.177 read from T0287.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 2evrA 166 :VFFGTSQ T0287 151 :L 2evrA 174 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=20966 # 1nqeA.143.550 read from T0287.t04.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)G146 (1nqeA)P554 because N (gamma') conformation "forbidden" or filtered. T0287 143 :ELY 1nqeA 551 :VAY T0287 147 :TNLPL 1nqeA 555 :VTSHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20968 # 1txvA.143.267 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1txvA 268 :EIL T0287 147 :TN 1txvA 272 :SY T0287 150 :PL 1txvA 275 :QR Number of specific fragments extracted= 3 number of extra gaps= 2 total=20971 # 1pjxA.143.249 read from T0287.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)E143 (1pjxA)E250 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0287 144 :LYG 1pjxA 251 :VFG T0287 149 :LPL 1pjxA 256 :GGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=20973 # 2fj8A.143.72 read from T0287.t04.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 T0287 143 :ELYGTN 2fj8A 73 :ICTRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20974 # 1hbnB.143.7 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)L149 (1hbnB)G15 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1hbnB 9 :DLYDDR T0287 150 :PL 1hbnB 16 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20976 # 1yn3A.143.8 read from T0287.t04.many.frag # found chain 1yn3A in training set T0287 143 :ELYGTNLPL 1yn3A 165 :TVNGTSQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20977 # 1ejfA.143.64 read from T0287.t04.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)E143 (1ejfA)K65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ejfA 66 :HKRTDR T0287 151 :L 1ejfA 73 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=20979 # 2f6eA.143.21 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYG 2f6eA 23 :FYFR T0287 149 :LPL 2f6eA 29 :LPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20981 # 1r5mA.143.132 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)G146 (1r5mA)N248 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1r5mA)T250 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELY 1r5mA 245 :RLW T0287 147 :T 1r5mA 249 :K T0287 149 :LPL 1r5mA 251 :GAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=20984 # 1cfb.143.111 read from T0287.t04.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)N148 (1cfb)E726 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1cfb)N728 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELYGT 1cfb 721 :VGQGT T0287 149 :L 1cfb 727 :P T0287 151 :L 1cfb 729 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=20987 # 1i0vA.143.77 read from T0287.t04.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)E143 (1i0vA)V78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1i0vA)N81 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 1i0vA 79 :VF T0287 147 :TN 1i0vA 82 :EN T0287 150 :PL 1i0vA 85 :QL Number of specific fragments extracted= 3 number of extra gaps= 3 total=20990 # 1tif.143.45 read from T0287.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0287)G146 (1tif)A49 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1tif)N51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1tif)K53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1tif)P54 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELY 1tif 46 :VLV T0287 147 :T 1tif 50 :P T0287 149 :L 1tif 52 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=20993 # 1gttA.144.190 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LY 1gttA 191 :VL T0287 147 :TNLPLL 1gttA 194 :EGFPPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20995 # 1xmkA.144.57 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 144 :LYG 1xmkA 345 :RQG T0287 150 :PLL 1xmkA 351 :PIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20997 # 1ru3A.144.344 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNLPL 1ru3A 345 :FGGGKTPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20998 # 1gd0A.144.48 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1gd0A 49 :F T0287 146 :GTNLPLL 1gd0A 51 :GSSEPCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21000 # 1lpbA.144.28 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1lpbA 29 :QHDTIL T0287 151 :LL 1lpbA 36 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21002 # 1v05A.144.42 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)N148 (1v05A)K2676 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LYGT 1v05A 2672 :VHGP T0287 149 :LPLL 1v05A 2677 :TPCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21004 # 1jiwI.144.16 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1jiwI 17 :LQQ T0287 148 :NLPLL 1jiwI 21 :EAPAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21006 # 1k3sA.144.71 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGT 1k3sA 72 :ADAD T0287 149 :L 1k3sA 77 :T T0287 151 :LL 1k3sA 79 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21009 # 1ok7A.144.43 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNLP 1ok7A 44 :LTGTDLE T0287 152 :L 1ok7A 52 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=21011 # 1bco.144.298 read from T0287.t04.many.frag # found chain 1bco in template set T0287 144 :LYGTNLPLL 1bco 546 :CYTLDGRFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21012 # 1ttuA.144.230 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ttuA 417 :ASSTKW T0287 151 :LL 1ttuA 424 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21014 # 2c5qA.144.149 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. T0287 144 :L 2c5qA 150 :A T0287 146 :GTNLPLL 2c5qA 152 :GTNVQLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21016 # 1jiwI.144.69 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1jiwI 70 :LL T0287 147 :TNLPLL 1jiwI 73 :RGGLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21018 # 1acc.144.541 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1acc 542 :Y T0287 146 :GTNLPLL 1acc 544 :GKDITEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21020 # 2fj8A.144.73 read from T0287.t04.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 T0287 144 :LY 2fj8A 74 :CT T0287 147 :TN 2fj8A 77 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=21022 # 1wnyA.144.68 read from T0287.t04.many.frag # found chain 1wnyA in template set T0287 144 :LYGTNLPLL 1wnyA 268 :LLGEGTPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21023 # 2f15A.144.37 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 144 :LY 2f15A 105 :LI T0287 147 :TN 2f15A 108 :SH T0287 151 :LL 2f15A 112 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21026 # 2d0oA.144.483 read from T0287.t04.many.frag # found chain 2d0oA in template set T0287 144 :LYGTNLPLL 2d0oA 484 :FFSTPLPPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21027 # 1nh1A.144.167 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)Y145 (1nh1A)H169 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1nh1A 168 :L T0287 146 :GTNLPLL 1nh1A 170 :GNVIPLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21029 # 2evrA.144.178 read from T0287.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 2evrA 167 :FFGTSQ T0287 151 :LL 2evrA 174 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21031 # 2jdxA.144.30 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)G146 (2jdxA)N70 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LY 2jdxA 68 :SY T0287 147 :TNLPLL 2jdxA 71 :EWDPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21033 # 1txvA.144.268 read from T0287.t04.many.frag # found chain 1txvA in template set T0287 144 :LYGTNLPLL 1txvA 269 :ILDSYYQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21034 # 1dmgA.144.167 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 144 :LYGTNLPLL 1dmgA 169 :LSGRNLPDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21035 # 1i0vA.144.78 read from T0287.t04.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 144 :LYGTN 1i0vA 79 :VFNEN T0287 150 :PLL 1i0vA 85 :QLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21037 # 1ejfA.144.65 read from T0287.t04.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ejfA 66 :HKRTDR T0287 151 :LL 1ejfA 73 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21039 # 2f6eA.144.22 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGT 2f6eA 24 :YFRN T0287 149 :LPLL 2f6eA 29 :LPQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21041 # 1pjxA.144.250 read from T0287.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1pjxA 251 :VFG T0287 150 :PLL 1pjxA 257 :GQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21043 # 1h4aX.144.155 read from T0287.t04.many.frag # found chain 1h4aX in training set Warning: unaligning (T0287)G146 (1h4aX)A159 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1h4aX 157 :WG T0287 147 :TNLPLL 1h4aX 160 :TNARVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21045 # 1yn3A.144.9 read from T0287.t04.many.frag # found chain 1yn3A in training set Warning: unaligning (T0287)G146 (1yn3A)G168 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LY 1yn3A 166 :VN T0287 147 :TNLPLL 1yn3A 169 :TSQNIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21047 # 1r5mA.144.133 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)G146 (1r5mA)N248 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1r5mA 246 :LW T0287 147 :TNLPLL 1r5mA 249 :KTGALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21049 # 1gttA.145.191 read from T0287.t04.many.frag # found chain 1gttA in training set T0287 145 :YGTNLPLLK 1gttA 192 :LAEGFPPLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21050 # 1k3sA.145.72 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1k3sA 73 :DADNT T0287 151 :LLK 1k3sA 79 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21052 # 1xmkA.145.58 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 145 :YG 1xmkA 346 :QG T0287 150 :PLLK 1xmkA 351 :PIWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21054 # 1ru3A.145.345 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :K 1ru3A 354 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=21056 # 1gd0A.145.49 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1gd0A 51 :GSSEPCAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21057 # 1lpbA.145.29 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1lpbA 30 :HDTIL T0287 151 :LLK 1lpbA 36 :LSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21059 # 1nh1A.145.168 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)Y145 (1nh1A)H169 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1nh1A 170 :GNVIPLNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21060 # 1jiwI.145.17 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 145 :YG 1jiwI 18 :QQ T0287 148 :NLPLLK 1jiwI 21 :EAPAIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21062 # 1wnyA.145.69 read from T0287.t04.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)Y145 (1wnyA)L269 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1wnyA 270 :GEGTPVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21063 # 1jiwI.145.70 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :YGTN 1jiwI 71 :LERG T0287 150 :PLLK 1jiwI 76 :LTLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21065 # 1bco.145.299 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1bco 547 :YTLDGRFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21066 # 1v05A.145.43 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 145 :YGTNLPLLK 1v05A 2673 :HGPKTPCEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21067 # 2fj8A.145.74 read from T0287.t04.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 145 :YGTN 2fj8A 75 :TRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21068 # 2jdxA.145.31 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)Y145 (2jdxA)Y69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2jdxA)N70 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPLLK 2jdxA 71 :EWDPLEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21069 # 1ttuA.145.231 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1ttuA 418 :S T0287 147 :TNL 1ttuA 420 :TKW T0287 151 :LLK 1ttuA 424 :AFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=21072 # 2f15A.145.38 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 145 :Y 2f15A 106 :I T0287 147 :T 2f15A 108 :S T0287 151 :LLK 2f15A 112 :FVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21075 # 1tul.145.75 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 145 :YGT 1tul 76 :VQN T0287 151 :LLK 1tul 82 :DLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21077 # 1ow1A.145.147 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 145 :YGTNLPLLK 1ow1A 3617 :PGSNQPAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21078 # 1gsa.145.214 read from T0287.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)Y145 (1gsa)D215 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1gsa)P218 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GT 1gsa 216 :GE T0287 149 :LPLLK 1gsa 219 :VPYCL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21080 # 1t6aA.145.61 read from T0287.t04.many.frag # found chain 1t6aA in template set T0287 145 :YGTNLPLLK 1t6aA 61 :DGRLYKGMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21081 # 1acc.145.542 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)K153 (1acc)D551 because P (beta_P) conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1acc 543 :QGKDITEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=21082 # 1ok7A.145.44 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLP 1ok7A 45 :TGTDLE T0287 152 :LK 1ok7A 52 :EM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21084 # 1cfb.145.133 read from T0287.t04.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)Y145 (1cfb)N743 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1cfb)N746 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1cfb)H748 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GT 1cfb 744 :AP T0287 149 :L 1cfb 747 :F T0287 151 :LLK 1cfb 749 :YYV Number of specific fragments extracted= 3 number of extra gaps= 3 total=21087 # 1txvA.145.269 read from T0287.t04.many.frag # found chain 1txvA in template set T0287 145 :YGTNLPLLK 1txvA 270 :LDSYYQRLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21088 # 1i0vA.145.79 read from T0287.t04.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)N148 (1i0vA)N83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1i0vA)G88 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGT 1i0vA 80 :FNE T0287 150 :PLL 1i0vA 85 :QLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21090 # 1l9vA.145.179 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1l9vA 180 :LDQNF T0287 151 :LLK 1l9vA 186 :EYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21092 # 1ejfA.145.66 read from T0287.t04.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 1ejfA 67 :K T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :LLK 1ejfA 73 :ILC Number of specific fragments extracted= 3 number of extra gaps= 2 total=21095 # 1yq2A.145.936 read from T0287.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. T0287 145 :Y 1yq2A 936 :D T0287 147 :TNLPLLK 1yq2A 938 :AGAPWLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21097 # 2biqA.145.151 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)Y145 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2biqA)G245 Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 148 :NLPLLK 2biqA 248 :RSPILT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21099 # 2evrA.145.179 read from T0287.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2evrA)H176 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 2evrA 168 :FGTSQ T0287 151 :LL 2evrA 174 :AT Number of specific fragments extracted= 2 number of extra gaps= 2 total=21101 # 1k3sA.146.73 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1k3sA 74 :ADNT T0287 151 :LLK 1k3sA 79 :LVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21103 # 1gttA.146.192 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPLLKL 1gttA 194 :EGFPPLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21104 # 1l9vA.146.180 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)G146 (1l9vA)D181 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKL 1l9vA 186 :EYKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21106 # 1xmkA.146.59 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 146 :G 1xmkA 347 :G T0287 150 :PLLKL 1xmkA 351 :PIWHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21108 # 1gd0A.146.50 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gd0A)L58 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :L 1gd0A 57 :A T0287 154 :L 1gd0A 59 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=21111 # 1ru3A.146.346 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1ru3A)L355 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPLLK 1ru3A 348 :GKTPSFE Number of specific fragments extracted= 1 number of extra gaps= 2 total=21112 # 1ow1A.146.148 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 146 :GTNLPLLKL 1ow1A 3618 :GSNQPAYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21113 # 1kjlA.146.34 read from T0287.t04.many.frag # found chain 1kjlA in template set T0287 146 :GTNLPLLKL 1kjlA 139 :KPNANRIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21114 # 2b8mA.146.87 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N87 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=21115 # 1lpbA.146.30 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1lpbA 31 :DTIL T0287 151 :LLKL 1lpbA 36 :LSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21117 # 2biqA.146.152 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 149 :LPLLKL 2biqA 249 :SPILTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21119 # 1k8wA.146.298 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTN 1k8wA 286 :GEN T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :L 1k8wA 294 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=21122 # 1nh1A.146.169 read from T0287.t04.many.frag # found chain 1nh1A in template set T0287 146 :GTNLPLLKL 1nh1A 170 :GNVIPLNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21123 # 1gsa.146.215 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 146 :GTNLPLLKL 1gsa 216 :GEPVPYCLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21124 # 1jiwI.146.71 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :TNLPLLKL 1jiwI 73 :RGGLTLML Number of specific fragments extracted= 1 number of extra gaps= 1 total=21125 # 1jiwI.146.18 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 146 :G 1jiwI 19 :Q T0287 148 :NLPLLKL 1jiwI 21 :EAPAICH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21127 # 1ospO.146.74 read from T0287.t04.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)G146 (1ospO)S91 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :TNLPLLKL 1ospO 92 :DDLGQTTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21128 # 1uv4A.146.30 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)N148 (1uv4A)E33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 146 :GT 1uv4A 31 :LT T0287 149 :LP 1uv4A 34 :ER T0287 152 :LKL 1uv4A 37 :LRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21131 # 1bco.146.300 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTN 1bco 548 :TLD T0287 150 :PLL 1bco 552 :RFI T0287 154 :L 1bco 556 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=21134 # 1tul.146.76 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1tul 77 :QN T0287 151 :LLKL 1tul 82 :DLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21136 # 1o59A.146.118 read from T0287.t04.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 146 :GTNLPL 1o59A 107 :GNHAPF T0287 154 :L 1o59A 115 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=21138 # 1yq2A.146.937 read from T0287.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1yq2A)A938 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1yq2A)R944 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :LPLL 1yq2A 940 :APWL T0287 154 :L 1yq2A 945 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=21140 # 2fj8A.146.75 read from T0287.t04.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 146 :GTN 2fj8A 76 :RSN T0287 154 :L 2fj8A 84 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=21142 # 1t6aA.146.62 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1t6aA 62 :GRLYK T0287 153 :KL 1t6aA 69 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21144 # 1wnyA.146.70 read from T0287.t04.many.frag # found chain 1wnyA in template set T0287 146 :GTNLPLLKL 1wnyA 270 :GEGTPVLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21145 # 1jl0A.146.233 read from T0287.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1jl0A)T241 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTN 1jl0A 234 :KSD T0287 150 :PLL 1jl0A 238 :TYW T0287 154 :L 1jl0A 242 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=21148 # 1txvA.146.270 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TN 1txvA 272 :SY T0287 150 :PLL 1txvA 275 :QRL T0287 154 :L 1txvA 279 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=21151 # 1p90A.146.23 read from T0287.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)N148 (1p90A)S124 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GT 1p90A 122 :FG T0287 149 :LP 1p90A 125 :CL T0287 152 :LKL 1p90A 128 :FLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21154 # 1ejfA.146.67 read from T0287.t04.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1ejfA 68 :RTDR T0287 151 :LLKL 1ejfA 73 :ILCC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21156 # 1v4pA.146.96 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)G146 (1v4pA)P97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKL 1v4pA 102 :ILKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21158 # 1gttA.147.193 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1gttA 194 :E T0287 149 :LPLLKLF 1gttA 196 :FPPLENP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21160 # 2b8mA.147.88 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=21161 # 1nh1A.147.170 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)N148 (1nh1A)V172 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :T 1nh1A 171 :N T0287 149 :LPLLKLF 1nh1A 173 :IPLNTFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21163 # 1l9vA.147.181 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKLF 1l9vA 186 :EYKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21165 # 2biqA.147.153 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 2biqA 247 :N T0287 149 :LPLLKLF 2biqA 249 :SPILTII Number of specific fragments extracted= 2 number of extra gaps= 1 total=21167 # 1k3sA.147.74 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :T 1k3sA 75 :D T0287 149 :L 1k3sA 77 :T T0287 151 :LLKLF 1k3sA 79 :LVALY Number of specific fragments extracted= 3 number of extra gaps= 2 total=21170 # 1ow1A.147.149 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 147 :TNLPLLKLF 1ow1A 3619 :SNQPAYVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21171 # 1uv4A.147.31 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :TNLPLL 1uv4A 32 :TEERGL T0287 154 :LF 1uv4A 39 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21173 # 1k8wA.147.299 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TN 1k8wA 287 :EN T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LF 1k8wA 294 :MG Number of specific fragments extracted= 3 number of extra gaps= 2 total=21176 # 1kjlA.147.35 read from T0287.t04.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)N148 (1kjlA)N141 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :T 1kjlA 140 :P T0287 149 :LP 1kjlA 142 :AN T0287 152 :LKLF 1kjlA 145 :IALD Number of specific fragments extracted= 3 number of extra gaps= 2 total=21179 # 1v4pA.147.97 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKLF 1v4pA 102 :ILKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21181 # 1ospO.147.75 read from T0287.t04.many.frag # found chain 1ospO in template set T0287 147 :TNLPLLKLF 1ospO 92 :DDLGQTTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21182 # 1jl0A.147.234 read from T0287.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :TN 1jl0A 235 :SD T0287 150 :PLLKLF 1jl0A 238 :TYWTIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21184 # 2czrA.147.66 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. T0287 147 :TNL 2czrA 59 :KDV T0287 151 :LLKLF 2czrA 63 :GIHIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21186 # 1gsa.147.216 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 147 :TNLPLLKLF 1gsa 217 :EPVPYCLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21187 # 1fjgP.147.11 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)N148 (1fjgP)H13 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1fjgP 12 :K T0287 149 :LPLLKLF 1fjgP 14 :NPHYRIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21189 # 1jiwI.147.19 read from T0287.t04.many.frag # found chain 1jiwI in training set T0287 147 :TNLPLLKLF 1jiwI 20 :DEAPAICHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21190 # 1gd0A.147.51 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gd0A)L58 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLP 1gd0A 52 :SSEP T0287 152 :L 1gd0A 57 :A T0287 154 :LF 1gd0A 59 :CS Number of specific fragments extracted= 3 number of extra gaps= 2 total=21193 # 1t6aA.147.63 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPL 1t6aA 63 :RLYKG T0287 153 :KLF 1t6aA 69 :AIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21195 # 1cid.147.123 read from T0287.t04.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 T0287 147 :TNL 1cid 124 :PTS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21197 # 1y12A.147.79 read from T0287.t04.many.frag # found chain 1y12A in template set T0287 147 :TNLPLLKLF 1y12A 77 :KHYPQAKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21198 # 1tul.147.77 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 147 :T 1tul 78 :N T0287 151 :LLKLF 1tul 82 :DLNAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21200 # 1o59A.147.119 read from T0287.t04.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)N148 (1o59A)H109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 147 :T 1o59A 108 :N T0287 149 :LPL 1o59A 110 :APF T0287 154 :LF 1o59A 115 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=21203 # 2a2cA.147.421 read from T0287.t04.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2a2cA)G403 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. T0287 150 :PLLKLF 2a2cA 405 :GGCTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=21204 # 2a8eA.147.164 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 2a8eA 165 :KKA T0287 151 :LLKLF 2a8eA 169 :LLCGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21206 # 1p90A.147.24 read from T0287.t04.many.frag # found chain 1p90A in training set T0287 147 :TNLPLLKLF 1p90A 123 :GSCLRFLVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21207 # 1ysqA.147.141 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)T147 (1ysqA)G140 because T (delta_L) conformation "forbidden" or filtered. T0287 148 :NLPLLKLF 1ysqA 141 :RVPYAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21208 # 1i4wA.147.248 read from T0287.t04.many.frag # found chain 1i4wA in template set T0287 147 :TNLPLLKLF 1i4wA 237 :TKGKPIALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21209 # 1ru3A.147.347 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPL 1ru3A 348 :GKTPS T0287 153 :KLF 1ru3A 354 :ELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21211 # 1yq2A.147.938 read from T0287.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)T147 (1yq2A)A938 because L (left) conformation "forbidden" or filtered. T0287 148 :NLPLLKLF 1yq2A 939 :GAPWLRID Number of specific fragments extracted= 1 number of extra gaps= 1 total=21212 # 2b8mA.148.89 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :V 2b8mA 97 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=21214 # 1nh1A.148.171 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)N148 (1nh1A)V172 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1nh1A 173 :IPLNTFRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21215 # 1gttA.148.194 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1gttA 196 :FPPLENPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21216 # 1l9vA.148.182 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N148 (1l9vA)N183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFV 1l9vA 186 :EYKVTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21218 # 2biqA.148.154 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 148 :NLPLLKLFV 2biqA 248 :RSPILTIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21219 # 1uv4A.148.32 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 148 :NLP 1uv4A 33 :EER T0287 152 :LKLFV 1uv4A 37 :LRVLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21221 # 1ow1A.148.150 read from T0287.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)N148 (1ow1A)N3620 because G (3-10) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1ow1A 3621 :QPAYVLQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21222 # 1jl0A.148.235 read from T0287.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 148 :N 1jl0A 236 :D T0287 150 :PLLKLFV 1jl0A 238 :TYWTIAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21224 # 1k8wA.148.300 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPLL 1k8wA 288 :NGKFI T0287 154 :LFV 1k8wA 294 :MGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21226 # 2a2cA.148.422 read from T0287.t04.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2a2cA)G406 because S (epsilon) conformation "forbidden" or filtered. T0287 150 :P 2a2cA 405 :G T0287 152 :LKLFV 2a2cA 407 :CTVSM Number of specific fragments extracted= 2 number of extra gaps= 2 total=21228 # 1gsa.148.217 read from T0287.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)N148 (1gsa)P218 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gsa)L223 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :LPLL 1gsa 219 :VPYC T0287 154 :LFV 1gsa 224 :ARI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21230 # 1k3sA.148.75 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k3sA)A81 because P (beta_P) conformation "forbidden" or filtered. T0287 148 :NL 1k3sA 76 :NT T0287 151 :LL 1k3sA 79 :LV T0287 154 :LFV 1k3sA 82 :LYR Number of specific fragments extracted= 3 number of extra gaps= 2 total=21233 # 1kjlA.148.36 read from T0287.t04.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)N148 (1kjlA)N141 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1kjlA 142 :AN T0287 152 :LKLFV 1kjlA 145 :IALDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=21235 # 1fjgP.148.12 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)K153 (1fjgP)R18 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLPLL 1fjgP 13 :HNPHY T0287 154 :LFV 1fjgP 19 :IVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21237 # 1vr8A.148.56 read from T0287.t04.many.frag # found chain 1vr8A in training set T0287 148 :NLPLLKLFV 1vr8A 69 :EYGPVFLYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21238 # 1v4pA.148.98 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 148 :NL 1v4pA 99 :DV T0287 151 :LLKLFV 1v4pA 102 :ILKVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21240 # 1cid.148.124 read from T0287.t04.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 T0287 148 :NL 1cid 125 :TS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21242 # 1tul.148.78 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1tul 82 :DLNAIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=21243 # 2btiA.148.27 read from T0287.t04.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 148 :NL 2btiA 26 :KG T0287 151 :LLKLFV 2btiA 29 :QVRIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21245 # 1i4wA.148.249 read from T0287.t04.many.frag # found chain 1i4wA in template set T0287 148 :NLPLLKLFV 1i4wA 238 :KGKPIALVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21246 # 2czrA.148.67 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2czrA)G63 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 2czrA 60 :DV T0287 152 :LKLFV 2czrA 64 :IHIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21248 # 1ospO.148.76 read from T0287.t04.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)K153 (1ospO)T98 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLPLL 1ospO 93 :DLGQT T0287 154 :LFV 1ospO 99 :LEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21250 # 1gd0A.148.52 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLP 1gd0A 53 :SEP T0287 152 :LKLFV 1gd0A 57 :ALCSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21252 # 1y12A.148.80 read from T0287.t04.many.frag # found chain 1y12A in template set Warning: unaligning (T0287)N148 (1y12A)H78 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1y12A 79 :YPQAKLTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21253 # 2a8eA.148.165 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 2a8eA 166 :KA T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FV 2a8eA 173 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=21256 # 1f8eA.148.105 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)N148 (1f8eA)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1f8eA)T188 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 1f8eA 187 :K T0287 151 :LLKLFV 1f8eA 189 :RMSICI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21258 # 1jiwI.148.20 read from T0287.t04.many.frag # found chain 1jiwI in training set T0287 148 :NLPLLKLFV 1jiwI 21 :EAPAICHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21259 # 1sqwA.148.136 read from T0287.t04.many.frag # found chain 1sqwA in template set Warning: unaligning (T0287)N148 (1sqwA)A137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1sqwA)D138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1sqwA)G142 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLL 1sqwA 139 :IPL T0287 154 :LFV 1sqwA 143 :FGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21261 # 1vs0A.148.209 read from T0287.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1vs0A 663 :LLMGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21262 # 1ysqA.148.142 read from T0287.t04.many.frag # found chain 1ysqA in training set T0287 148 :NLPLLKLFV 1ysqA 141 :RVPYAVSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21263 # 1nh1A.149.172 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)K153 (1nh1A)T177 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :LPLL 1nh1A 173 :IPLN T0287 154 :LFVM 1nh1A 178 :FRVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21265 # 1l9vA.149.183 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFVM 1l9vA 186 :EYKVTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21267 # 2b8mA.149.90 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :VM 2b8mA 97 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21269 # 1uv4A.149.33 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LP 1uv4A 34 :ER T0287 152 :L 1uv4A 37 :L T0287 154 :LFVM 1uv4A 39 :VLKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=21272 # 2biqA.149.155 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)M157 (2biqA)L257 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 2biqA 249 :SPILTIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21273 # 1vr8A.149.57 read from T0287.t04.many.frag # found chain 1vr8A in training set T0287 149 :LPLLKLFVM 1vr8A 70 :YGPVFLYVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21274 # 1ow1A.149.151 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 149 :LPLLKLFVM 1ow1A 3621 :QPAYVLQIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21275 # 1k3sA.149.76 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1k3sA 77 :T T0287 151 :LLKLFVM 1k3sA 79 :LVALYRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21277 # 1jl0A.149.236 read from T0287.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1jl0A)T241 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 1jl0A 238 :TYW T0287 154 :LFVM 1jl0A 242 :IAIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=21279 # 1fjgP.149.13 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1fjgP 14 :NPHYRIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21280 # 1gsa.149.218 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 149 :LPLLKLFVM 1gsa 219 :VPYCLARIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21281 # 1gttA.149.195 read from T0287.t04.many.frag # found chain 1gttA in training set T0287 149 :LPLLKLFVM 1gttA 196 :FPPLENPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21282 # 2a8eA.149.166 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 2a8eA 167 :A T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVM 2a8eA 173 :IQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21285 # 1no5A.149.43 read from T0287.t04.many.frag # found chain 1no5A in training set T0287 149 :LPLLKLFVM 1no5A 44 :YSDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=21286 # 1v4pA.149.99 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 1v4pA 100 :V T0287 151 :LLKLFVM 1v4pA 102 :ILKVVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21288 # 2btiA.149.28 read from T0287.t04.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2btiA)R31 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :L 2btiA 27 :G T0287 151 :LL 2btiA 29 :QV T0287 154 :LFVM 2btiA 32 :IGVN Number of specific fragments extracted= 3 number of extra gaps= 2 total=21291 # 1p90A.149.26 read from T0287.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1p90A 125 :CL T0287 152 :LKLFVM 1p90A 128 :FLVYQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21293 # 1jiwI.149.21 read from T0287.t04.many.frag # found chain 1jiwI in training set T0287 149 :LPLLKLFVM 1jiwI 22 :APAICHLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21294 # 1tul.149.79 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVM 1tul 82 :DLNAIMF Number of specific fragments extracted= 1 number of extra gaps= 1 total=21295 # 1i4wA.149.250 read from T0287.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0287)K153 (1i4wA)A243 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :LPLL 1i4wA 239 :GKPI T0287 154 :LFVM 1i4wA 244 :LVEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21297 # 1k8wA.149.301 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0287 150 :PLLKLFVM 1k8wA 290 :KFIGMGEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21298 # 2a2cA.149.423 read from T0287.t04.many.frag # found chain 2a2cA in template set T0287 149 :LPLLKLFVM 2a2cA 404 :WGGCTVSMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21299 # 1vl7A.149.75 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 149 :LPLLKLFVM 1vl7A 64 :NPLVNVLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21300 # 1cid.149.125 read from T0287.t04.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K134 T0287 149 :L 1cid 126 :S T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21302 # 1vs0A.149.210 read from T0287.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVM 1vs0A 662 :SLLMGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21303 # 1ftrA.149.69 read from T0287.t04.many.frag # found chain 1ftrA in training set T0287 149 :LPLLKLFVM 1ftrA 70 :RPGVTIMIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21304 # 1ry9A.149.107 read from T0287.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1ry9A 96 :E T0287 151 :LLKLFVM 1ry9A 98 :LQLRVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21306 # 1k2xA.149.77 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k2xA)D83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 1k2xA 79 :T T0287 151 :LL 1k2xA 81 :EL T0287 155 :FVM 1k2xA 85 :CVM Number of specific fragments extracted= 3 number of extra gaps= 2 total=21309 # 1kjlA.149.37 read from T0287.t04.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1kjlA 142 :AN T0287 152 :LKLFVM 1kjlA 145 :IALDFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21311 # 1vqoS.149.59 read from T0287.t04.many.frag # found chain 1vqoS in template set Warning: unaligning (T0287)P150 (1vqoS)G60 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :L 1vqoS 59 :D T0287 151 :LLKLFVM 1vqoS 61 :EKKAVVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21313 # 1nh1A.150.173 read from T0287.t04.many.frag # found chain 1nh1A in template set T0287 150 :PLLKLFVMT 1nh1A 174 :PLNTFRVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21314 # 1l9vA.150.184 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1l9vA 186 :EYKVTLNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21315 # 2biqA.150.156 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 150 :PLLKLFVMT 2biqA 250 :PILTIITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21316 # 1uv4A.150.34 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLL 1uv4A 35 :RGL T0287 154 :LFV 1uv4A 39 :VLK T0287 158 :T 1uv4A 43 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=21319 # 1vr8A.150.58 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)K153 (1vr8A)F74 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 1vr8A 71 :GPV T0287 154 :LFVMT 1vr8A 75 :LYVYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21321 # 2b8mA.150.91 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 150 :PLLK 2b8mA 91 :DILE T0287 156 :VMT 2b8mA 97 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21323 # 1k3sA.150.77 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1k3sA 79 :LVALYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=21324 # 1ry9A.150.108 read from T0287.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ry9A 98 :LQLRVV T0287 158 :T 1ry9A 105 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=21326 # 2a8eA.150.167 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVMT 2a8eA 173 :IQLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=21328 # 1ow1A.150.152 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 150 :PLLKLFVMT 1ow1A 3622 :PAYVLQIFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21329 # 1fjgP.150.14 read from T0287.t04.many.frag # found chain 1fjgP in template set T0287 150 :PLLKLFVMT 1fjgP 15 :PHYRIVVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21330 # 1gsa.150.219 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 150 :PLLKLFVMT 1gsa 220 :PYCLARIPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21331 # 1no5A.150.44 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 T0287 150 :PLLKLFVM 1no5A 45 :SDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21332 # 1p90A.150.27 read from T0287.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1p90A 126 :L T0287 152 :LKLFVMT 1p90A 128 :FLVYQVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21334 # 1vl7A.150.76 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 150 :PLLKLFVMT 1vl7A 65 :PLVNVLFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21335 # 1g60A.150.115 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1g60A)Q116 T0287 151 :LLKLFVMT 1g60A 117 :ETILFFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21336 # 1v4pA.150.100 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1v4pA 102 :ILKVVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21337 # 1jl0A.150.237 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 150 :PLLKLFVMT 1jl0A 238 :TYWTIAITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21338 # 1k8wA.150.302 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LFVMT 1k8wA 294 :MGEID Number of specific fragments extracted= 2 number of extra gaps= 1 total=21340 # 1ftrA.150.70 read from T0287.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1ftrA 71 :P T0287 152 :LKLFVMT 1ftrA 73 :VTIMIGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21342 # 1jiwI.150.22 read from T0287.t04.many.frag # found chain 1jiwI in training set T0287 150 :PLLKLFVMT 1jiwI 23 :PAICHLELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21343 # 1t6aA.150.66 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1t6aA)A69 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :P 1t6aA 66 :K T0287 154 :LFVMT 1t6aA 70 :ISVRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21345 # 1vs0A.150.211 read from T0287.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F155 (1vs0A)G666 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1vs0A)G669 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKL 1vs0A 663 :LLM T0287 156 :VM 1vs0A 667 :IP Number of specific fragments extracted= 2 number of extra gaps= 3 total=21347 # 2btiA.150.29 read from T0287.t04.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2btiA)R31 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 2btiA 29 :QV T0287 154 :LFVMT 2btiA 32 :IGVNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21349 # 1k2xA.150.78 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVMT 1k2xA 85 :CVMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21351 # 1wvhA.150.107 read from T0287.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)P150 (1wvhA)N1712 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1wvhA)E1719 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1wvhA 1713 :VCHLFA T0287 158 :T 1wvhA 1720 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=21353 # 1w0pA.150.712 read from T0287.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)P150 (1w0pA)Q713 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1w0pA)N714 because L (left) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1w0pA 715 :LGLWFSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=21354 # 2jdxA.150.36 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)L154 (2jdxA)V78 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLLK 2jdxA 74 :PLEE T0287 155 :FVMT 2jdxA 79 :IVGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21356 # 1ysqA.150.144 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLLKLFV 1ysqA 143 :PYAVSIS T0287 158 :T 1ysqA 151 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=21358 # 1i4wA.150.251 read from T0287.t04.many.frag # found chain 1i4wA in template set T0287 150 :PLLKLFVMT 1i4wA 240 :KPIALVEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21359 # 1nh1A.151.174 read from T0287.t04.many.frag # found chain 1nh1A in template set T0287 151 :LLKLFVMTD 1nh1A 175 :LNTFRVATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21360 # 1l9vA.151.185 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 151 :LLKLFVMTD 1l9vA 186 :EYKVTLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=21361 # 2biqA.151.157 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 151 :LLKLFVMTD 2biqA 251 :ILTIITLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=21362 # 1ry9A.151.109 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 151 :LLKLFVMTD 1ry9A 98 :LQLRVVIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21363 # 1vr8A.151.59 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1vr8A 72 :PVFLYVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21364 # 1uv4A.151.35 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1uv4A 37 :LRVLK T0287 158 :TD 1uv4A 43 :SD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21366 # 1vl7A.151.77 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 151 :LLKLFVMTD 1vl7A 66 :LVNVLFVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21367 # 1no5A.151.45 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 T0287 151 :LLKLFVM 1no5A 46 :DLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21368 # 2a8eA.151.168 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 151 :LLKLFVMTD 2a8eA 169 :LLCGIQLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21369 # 1k3sA.151.78 read from T0287.t04.many.frag # found chain 1k3sA in template set T0287 151 :LLKLFVMTD 1k3sA 79 :LVALYRLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21370 # 1gsa.151.220 read from T0287.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)M157 (1gsa)P227 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1gsa 221 :YCLARI T0287 158 :T 1gsa 228 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=21372 # 2b8mA.151.92 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 151 :LLK 2b8mA 92 :ILE T0287 156 :VMTD 2b8mA 97 :VVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21374 # 1jl0A.151.238 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 151 :LLKLFVMTD 1jl0A 239 :YWTIAITPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21375 # 1fjgP.151.15 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)K153 (1fjgP)R18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LL 1fjgP 16 :HY T0287 154 :LFV 1fjgP 19 :IVV T0287 158 :TD 1fjgP 23 :DA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21378 # 1k8wA.151.303 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LL 1k8wA 291 :FI T0287 154 :LFVMTD 1k8wA 294 :MGEIDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21380 # 1ow1A.151.153 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 151 :LLKLFVMTD 1ow1A 3623 :AYVLQIFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21381 # 1wd6A.151.66 read from T0287.t04.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LL 1wd6A 50 :AG T0287 154 :LFVMTD 1wd6A 53 :IYLFTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21383 # 1g60A.151.116 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1g60A 117 :ETILFFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21384 # 1p90A.151.28 read from T0287.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1p90A 128 :FLVYQVSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21385 # 1wvhA.151.108 read from T0287.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)D159 (1wvhA)D1721 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1wvhA 1713 :VCHLFAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21386 # 1ysqA.151.145 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :L 1ysqA 144 :Y T0287 153 :KLFVMTD 1ysqA 146 :VSISLST Number of specific fragments extracted= 2 number of extra gaps= 1 total=21388 # 1k2xA.151.79 read from T0287.t04.many.frag # found chain 1k2xA in training set T0287 151 :LLKLFVMTD 1k2xA 81 :ELDACVMDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21389 # 1ifrA.151.19 read from T0287.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0287)L151 (1ifrA)F451 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ifrA)K457 because G (3-10) conformation "forbidden" or filtered. T0287 152 :LKLFV 1ifrA 452 :VRLRN T0287 158 :TD 1ifrA 458 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=21391 # 1ftrA.151.71 read from T0287.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ftrA 73 :VTIMIGHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21392 # 1v4pA.151.101 read from T0287.t04.many.frag # found chain 1v4pA in training set T0287 151 :LLKLFVMTD 1v4pA 102 :ILKVVVIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=21393 # 2cxhA.151.98 read from T0287.t04.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)L151 (2cxhA)I79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 2cxhA 80 :IRVYAVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=21394 # 1vetA.151.87 read from T0287.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1vetA 88 :LVVSFI T0287 158 :TD 1vetA 95 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21396 # 1ikoP.151.48 read from T0287.t04.many.frag # found chain 1ikoP in template set T0287 151 :LLKLFVMTD 1ikoP 78 :YYKVYMVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21397 # 2acaA.151.135 read from T0287.t04.many.frag # found chain 2acaA in template set Warning: unaligning (T0287)F155 (2acaA)A140 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKL 2acaA 136 :FAEF T0287 156 :VMTD 2acaA 141 :IMTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21399 # 1yu0A.151.107 read from T0287.t04.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 151 :LLKL 1yu0A 108 :DYAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21401 # 1l9vA.152.186 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 152 :LKLFVMTDE 1l9vA 187 :YKVTLNEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21402 # 1nh1A.152.175 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)K153 (1nh1A)T177 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 1nh1A 176 :N T0287 154 :LFVMTDE 1nh1A 178 :FRVATDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21404 # 1no5A.152.46 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 T0287 152 :LKLFVM 1no5A 47 :LDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21405 # 1vl7A.152.78 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 152 :LKLFVMTDE 1vl7A 67 :VNVLFVDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21406 # 1ry9A.152.110 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 152 :LKLFVMTDE 1ry9A 99 :QLRVVIKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21407 # 1jl0A.152.239 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 152 :LKLFVMTDE 1jl0A 240 :WTIAITPEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21408 # 1vr8A.152.60 read from T0287.t04.many.frag # found chain 1vr8A in training set T0287 152 :LKLFVMTDE 1vr8A 73 :VFLYVYKGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21409 # 1uv4A.152.36 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1uv4A 37 :LRVLK T0287 158 :TDE 1uv4A 43 :SDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21411 # 1ifrA.152.20 read from T0287.t04.many.frag # found chain 1ifrA in training set T0287 152 :LKLFVMTDE 1ifrA 452 :VRLRNKSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21412 # 1fjgP.152.16 read from T0287.t04.many.frag # found chain 1fjgP in template set T0287 152 :LKLFVMTDE 1fjgP 17 :YRIVVTDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21413 # 2a8eA.152.169 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 2a8eA 170 :LC T0287 155 :FVMTDE 2a8eA 173 :IQLQKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21415 # 2biqA.152.158 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 152 :LKLFVMTDE 2biqA 252 :LTIITLEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21416 # 1wd6A.152.67 read from T0287.t04.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)L152 (1wd6A)G51 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 1wd6A 52 :GIYLFTDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21417 # 1wvhA.152.109 read from T0287.t04.many.frag # found chain 1wvhA in template set T0287 152 :LKLFVMTDE 1wvhA 1714 :CHLFAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21418 # 1gsa.152.221 read from T0287.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1gsa 222 :CLARIPQ T0287 160 :E 1gsa 230 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=21420 # 1k8wA.152.304 read from T0287.t04.many.frag # found chain 1k8wA in template set T0287 152 :LKLFVMTDE 1k8wA 292 :IGMGEIDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21421 # 2c60A.152.67 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)K153 (2c60A)D82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 T0287 152 :L 2c60A 81 :L T0287 154 :LFV 2c60A 83 :LHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 3 number of extra gaps= 2 total=21424 # 1yu0A.152.108 read from T0287.t04.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 Warning: unaligning (T0287)E160 (1yu0A)G117 because T (delta_L) conformation "forbidden" or filtered. T0287 152 :LKL 1yu0A 109 :YAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21426 # 2cy5A.152.94 read from T0287.t04.many.frag # found chain 2cy5A in template set T0287 152 :LKLFVMTDE 2cy5A 120 :LLLVCQEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21427 # 1vetA.152.88 read from T0287.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1vetA 89 :VVSFI T0287 158 :TDE 1vetA 95 :SSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21429 # 1g60A.152.117 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1g60A 118 :TILFFSK T0287 160 :E 1g60A 126 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=21431 # 1f8eA.152.109 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1f8eA)P197 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :LKLFV 1f8eA 190 :MSICI T0287 160 :E 1f8eA 198 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=21433 # 1k2xA.152.80 read from T0287.t04.many.frag # found chain 1k2xA in training set T0287 152 :LKLFVMTDE 1k2xA 82 :LDACVMDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21434 # 1yb3A.152.83 read from T0287.t04.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1yb3A)F77 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1yb3A)F77 T0287 154 :LFVMTDE 1yb3A 78 :VFAFPKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21435 # 2cxhA.152.99 read from T0287.t04.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 2cxhA 80 :IRVYAVE T0287 160 :E 2cxhA 88 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=21437 # 1k3sA.152.79 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 1k3sA 80 :VA T0287 155 :FVMTDE 1k3sA 83 :YRLPQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21439 # 1dp4A.152.375 read from T0287.t04.many.frag # found chain 1dp4A in template set T0287 152 :LKLFVMTDE 1dp4A 376 :FSLWDMDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21440 # 1o4yA.152.118 read from T0287.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0287)K153 (1o4yA)A136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F155 (1o4yA)W138 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :L 1o4yA 135 :N T0287 154 :L 1o4yA 137 :F T0287 156 :VMTDE 1o4yA 139 :TLTDD Number of specific fragments extracted= 3 number of extra gaps= 2 total=21443 # 1ysqA.152.146 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :TDE 1ysqA 151 :STS Number of specific fragments extracted= 2 number of extra gaps= 2 total=21445 # 1tvgA.152.81 read from T0287.t04.many.frag # found chain 1tvgA in training set T0287 152 :LKLFVMTDE 1tvgA 72 :LKIEKSTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21446 # 1no5A.153.47 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 T0287 153 :KLFVM 1no5A 48 :DLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21447 # 1ry9A.153.111 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 153 :KLFVMTDEE 1ry9A 100 :LRVVIKDDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21448 # 1jl0A.153.240 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 153 :KLFVMTDEE 1jl0A 241 :TIAITPEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21449 # 1l9vA.153.187 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 153 :KLFVMTDEE 1l9vA 188 :KVTLNEDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21450 # 1vl7A.153.79 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 153 :KLFVMTDEE 1vl7A 68 :NVLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21451 # 2biqA.153.159 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 153 :KLFVMTDEE 2biqA 253 :TIITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21452 # 1wd6A.153.68 read from T0287.t04.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1wd6A 53 :IYLFTDEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21453 # 1g60A.153.118 read from T0287.t04.many.frag # found chain 1g60A in training set T0287 153 :KLFVMTDEE 1g60A 119 :ILFFSKSKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21454 # 2c60A.153.68 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 T0287 153 :KLFV 2c60A 82 :DLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21456 # 2czrA.153.72 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 2czrA 65 :HIVAIPDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21457 # 2a8eA.153.170 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 153 :KLFVMTDEE 2a8eA 171 :CGIQLQKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21458 # 1dp4A.153.376 read from T0287.t04.many.frag # found chain 1dp4A in template set T0287 153 :KLFVMTDEE 1dp4A 377 :SLWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=21459 # 1nh1A.153.176 read from T0287.t04.many.frag # found chain 1nh1A in template set T0287 153 :KLFVMTDEE 1nh1A 177 :TFRVATDTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21460 # 3sil.153.139 read from T0287.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0287)E160 (3sil)D150 because L (left) conformation "forbidden" or filtered. T0287 153 :KLFVMTD 3sil 143 :VLYKSTD T0287 161 :E 3sil 151 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=21462 # 1o4yA.153.119 read from T0287.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0287)E161 (1o4yA)E144 because L (left) conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 1o4yA 136 :AFWTLTDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=21463 # 1h5rA.153.174 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 153 :KLFVMTDEE 1h5rA 175 :GLYFYDNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21464 # 1wvhA.153.110 read from T0287.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)D159 (1wvhA)D1721 because E (beta_S) conformation "forbidden" or filtered. T0287 153 :KLFVMT 1wvhA 1715 :HLFAEL T0287 160 :EE 1wvhA 1722 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21466 # 1vr8A.153.61 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1vr8A 74 :FLYVYK T0287 160 :EE 1vr8A 81 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21468 # 1ysqA.153.147 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :TDEE 1ysqA 151 :STSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21470 # 1k2xA.153.81 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :K 1k2xA 83 :D T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21472 # 1ftrA.153.73 read from T0287.t04.many.frag # found chain 1ftrA in training set T0287 153 :KLFVMTDEE 1ftrA 74 :TIMIGHNDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21473 # 1gsa.153.222 read from T0287.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1gsa)T232 T0287 153 :KLFVMTDE 1gsa 223 :LARIPQGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=21474 # 1fjgP.153.17 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1fjgP 18 :RIVV T0287 158 :TDEE 1fjgP 23 :DARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21476 # 1gycA.153.121 read from T0287.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)K153 (1gycA)G122 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1gycA 123 :PFVVYDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21477 # 1f8eA.153.110 read from T0287.t04.many.frag # found chain 1f8eA in training set T0287 153 :KLFVMTDEE 1f8eA 191 :SICISGPNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21478 # 1yu0A.153.109 read from T0287.t04.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 153 :KL 1yu0A 110 :AI T0287 157 :MTDEE 1yu0A 114 :CDDGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21480 # 2b4vA.153.79 read from T0287.t04.many.frag # found chain 2b4vA in template set T0287 153 :KLFVMTDEE 2b4vA 99 :DLACMFDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21481 # 1vetA.153.89 read from T0287.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1vetA 90 :VSFI T0287 158 :TDEE 1vetA 95 :SSSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21483 # 1k8wA.153.305 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1k8wA 294 :MGEIDDEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=21484 # 1yrkA.153.72 read from T0287.t04.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1yrkA)E78 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KLFVMT 1yrkA 70 :QIVLMR T0287 160 :E 1yrkA 77 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=21486 # 1no5A.154.48 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 T0287 154 :LFVM 1no5A 49 :LAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21487 # 1zpvA.154.48 read from T0287.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFV 1zpvA 46 :AVV T0287 158 :TDEEV 1zpvA 50 :SDEKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21489 # 2a8eA.154.171 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 2a8eA 173 :IQLQKEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21490 # 2biqA.154.160 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 154 :LFVMTDEEV 2biqA 254 :IITLEDSSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21491 # 1ry9A.154.112 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 154 :LFVMTDEEV 1ry9A 101 :RVVIKDDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21492 # 2c60A.154.69 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 154 :LFV 2c60A 83 :LHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21494 # 1g60A.154.119 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1g60A 120 :LFFSK T0287 160 :EEV 1g60A 126 :KNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21496 # 1wd6A.154.69 read from T0287.t04.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1wd6A 53 :IYLFT T0287 160 :EEV 1wd6A 59 :EKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21498 # 2czrA.154.73 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 154 :LFVMTDE 2czrA 66 :IVAIPDN T0287 162 :V 2czrA 74 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=21500 # 1o4yA.154.120 read from T0287.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0287)E161 (1o4yA)E144 because L (left) conformation "forbidden" or filtered. T0287 154 :LFVMTDE 1o4yA 137 :FWTLTDD T0287 162 :V 1o4yA 145 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=21502 # 1yrkA.154.73 read from T0287.t04.many.frag # found chain 1yrkA in template set T0287 154 :LFVMTDEEV 1yrkA 71 :IVLMRAAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21503 # 1ysqA.154.148 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFV 1ysqA 147 :SIS T0287 158 :TDEEV 1ysqA 151 :STSRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21505 # 1gycA.154.122 read from T0287.t04.many.frag # found chain 1gycA in template set T0287 154 :LFVMTDEEV 1gycA 123 :PFVVYDPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21506 # 1f60B.154.58 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 154 :LFVMTDEEV 1f60B 1171 :NCVVEDDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21507 # 1h5rA.154.175 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 154 :LFVMTDEEV 1h5rA 176 :LYFYDNDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21508 # 1vr8A.154.62 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1vr8A 75 :LYVYK T0287 160 :EEV 1vr8A 81 :EEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21510 # 12asA.154.119 read from T0287.t04.many.frag # found chain 12asA in template set T0287 154 :LFVMTDEEV 12asA 120 :ERVMGDGER Number of specific fragments extracted= 1 number of extra gaps= 0 total=21511 # 1gw5S.154.66 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 154 :LFVMTDEEV 1gw5S 67 :FCICVDVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=21512 # 1dp4A.154.377 read from T0287.t04.many.frag # found chain 1dp4A in template set Warning: unaligning (T0287)V162 (1dp4A)G386 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1dp4A 378 :LWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 1 total=21513 # 2ajfE.154.63 read from T0287.t04.many.frag # found chain 2ajfE in template set T0287 154 :LFVMTDEEV 2ajfE 386 :SFVVKGDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21514 # 1k2xA.154.82 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1k2xA)L92 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 1 number of extra gaps= 2 total=21515 # 1cfzA.154.73 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 154 :LFVMTDE 1cfzA 74 :MMILRDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21516 # 1wnaA.154.90 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 154 :LFVMTDEEV 1wnaA 91 :EAVVSPGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=21517 # 1vl7A.154.80 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 154 :LFVMTDEEV 1vl7A 69 :VLFVDDEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21518 # 1t9fA.154.158 read from T0287.t04.many.frag # found chain 1t9fA in template set Warning: unaligning (T0287)E161 (1t9fA)I185 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFVMTDE 1t9fA 178 :EVVGTDS T0287 162 :V 1t9fA 186 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=21520 # 1ftrA.154.74 read from T0287.t04.many.frag # found chain 1ftrA in training set T0287 154 :LFVMTDEEV 1ftrA 75 :IMIGHNDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=21521 # 1vr7A.154.90 read from T0287.t04.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 154 :LFVMT 1vr7A 79 :DLFTC T0287 162 :V 1vr7A 87 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=21523 # 2a2cA.154.428 read from T0287.t04.many.frag # found chain 2a2cA in template set T0287 154 :LFVMTDEEV 2a2cA 409 :VSMVPADKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21524 # 1yj7A.154.125 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 154 :LFVMTDEEV 1yj7A 145 :VLVISSPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21525 # 1jl0A.154.241 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 154 :LFVMTDEEV 1jl0A 242 :IAITPEPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21526 # 2a8eA.155.172 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 155 :FVMTDEEVN 2a8eA 173 :IQLQKEEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21527 # 1zpvA.155.49 read from T0287.t04.many.frag # found chain 1zpvA in template set T0287 155 :FVMTDEEVN 1zpvA 47 :VVSSDEKQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21528 # 1no5A.155.49 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 T0287 155 :FVM 1no5A 50 :AII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21529 # 1cfzA.155.74 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 155 :FVMTDE 1cfzA 75 :MILRDE T0287 163 :N 1cfzA 83 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=21531 # 2c60A.155.70 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N163 (2c60A)I92 because E (beta_S) conformation "forbidden" or filtered. T0287 155 :FV 2c60A 84 :HY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21533 # 1xkpC.155.94 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 155 :FVMTDEEVN 1xkpC 95 :ARLRLQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21534 # 1wnaA.155.91 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 155 :FVMTDEEVN 1wnaA 92 :AVVSPGEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21535 # 2biqA.155.161 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 155 :FVMTDEEVN 2biqA 255 :ITLEDSSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21536 # 1yb3A.155.86 read from T0287.t04.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1yb3A 79 :FAFPKEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21537 # 1gw5S.155.67 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 155 :FVMTDEEVN 1gw5S 68 :CICVDVNDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21538 # 1h5rA.155.176 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 155 :FVMTDEEVN 1h5rA 177 :YFYDNDVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21539 # 1ysqA.155.149 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FV 1ysqA 148 :IS T0287 158 :TDEEVN 1ysqA 151 :STSRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21541 # 2b5iC.155.59 read from T0287.t04.many.frag # found chain 2b5iC in template set T0287 155 :FVMTDEEVN 2b5iC 93 :CQLQKKEIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21542 # 1ry9A.155.113 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 155 :FVMTDEEVN 1ry9A 102 :VVIKDDYVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21543 # 1f60B.155.59 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 155 :FVMTDEEVN 1f60B 1172 :CVVEDDKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21544 # 1g60A.155.120 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1g60A 121 :FFSK T0287 160 :EEVN 1g60A 126 :KNHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21546 # 1vr8A.155.63 read from T0287.t04.many.frag # found chain 1vr8A in training set T0287 155 :FVMTDEEVN 1vr8A 76 :YVYKGEEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21547 # 12asA.155.120 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTD 12asA 121 :RVMGD T0287 161 :EV 12asA 127 :ER Number of specific fragments extracted= 2 number of extra gaps= 2 total=21549 # 1t6aA.155.71 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. T0287 155 :FVMTD 1t6aA 71 :SVRTA T0287 161 :EVN 1t6aA 77 :EET Number of specific fragments extracted= 2 number of extra gaps= 1 total=21551 # 1yj7A.155.126 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)M157 (1yj7A)I148 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FV 1yj7A 146 :LV T0287 158 :TDEEVN 1yj7A 149 :SSPEVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21553 # 1wd6A.155.70 read from T0287.t04.many.frag # found chain 1wd6A in template set T0287 155 :FVMTDEEVN 1wd6A 54 :YLFTDEKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21554 # 1gycA.155.123 read from T0287.t04.many.frag # found chain 1gycA in template set T0287 155 :FVMTDEEVN 1gycA 124 :FVVYDPKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21555 # 2a90A.155.27 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)D159 (2a90A)S53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMT 2a90A 49 :WEFE T0287 161 :EVN 2a90A 55 :GKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=21557 # 1uylA.155.186 read from T0287.t04.many.frag # found chain 1uylA in training set T0287 155 :FVMTDEEVN 1uylA 187 :ILHLKEDQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21558 # 2czrA.155.74 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDE 2czrA 67 :VAIPDN T0287 162 :VN 2czrA 74 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21560 # 1pv5A.155.222 read from T0287.t04.many.frag # found chain 1pv5A in training set Warning: unaligning (T0287)V162 (1pv5A)I227 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1pv5A)D228 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 1pv5A 220 :QIDSDDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=21561 # 1ln1A.155.41 read from T0287.t04.many.frag # found chain 1ln1A in template set Warning: unaligning (T0287)N163 (1ln1A)G50 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1ln1A 42 :YRLLDKKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21562 # 1yrkA.155.74 read from T0287.t04.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1yrkA)A77 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FVMT 1yrkA 72 :VLMR T0287 161 :EVN 1yrkA 78 :EEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21564 # 2ajfE.155.64 read from T0287.t04.many.frag # found chain 2ajfE in template set Warning: unaligning (T0287)F155 (2ajfE)F387 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEVN 2ajfE 388 :VVKGDDVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=21565 # 1t9fA.155.159 read from T0287.t04.many.frag # found chain 1t9fA in template set Warning: unaligning (T0287)E161 (1t9fA)I185 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FVMTDE 1t9fA 179 :VVGTDS T0287 162 :VN 1t9fA 186 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21567 # 1cfzA.156.75 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 156 :VMTDE 1cfzA 76 :ILRDE T0287 163 :NF 1cfzA 83 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21569 # 1zpvA.156.50 read from T0287.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1zpvA)K53 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :V 1zpvA 48 :V T0287 158 :TDE 1zpvA 50 :SDE T0287 162 :VNF 1zpvA 54 :QDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=21572 # 1no5A.156.50 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 156 :VM 1no5A 51 :II Number of specific fragments extracted= 1 number of extra gaps= 1 total=21573 # 2a8eA.156.173 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 156 :VMTDEEVNF 2a8eA 174 :QLQKEEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21574 # 2c60A.156.71 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 156 :V 2c60A 85 :Y T0287 159 :DE 2c60A 88 :NE T0287 163 :NF 2c60A 92 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21577 # 1wnaA.156.92 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 156 :VMTDEEVNF 1wnaA 93 :VVSPGEMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21578 # 1h5rA.156.177 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 156 :VMTDEEVNF 1h5rA 178 :FYDNDVVQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=21579 # 12asA.156.121 read from T0287.t04.many.frag # found chain 12asA in template set T0287 156 :VMTDEEVNF 12asA 122 :VMGDGERQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21580 # 1xkpC.156.95 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 156 :VMTDEEVNF 1xkpC 96 :RLRLQELDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21581 # 2b5iC.156.60 read from T0287.t04.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)M157 (2b5iC)L95 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :V 2b5iC 94 :Q T0287 158 :TDEEVNF 2b5iC 96 :QKKEIHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21583 # 1yb3A.156.87 read from T0287.t04.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1yb3A 80 :AFPKEEL T0287 164 :F 1yb3A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=21585 # 1t6aA.156.72 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 T0287 156 :VMTDEEVN 1t6aA 72 :VRTAGEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=21586 # 1f60B.156.60 read from T0287.t04.many.frag # found chain 1f60B in training set Warning: unaligning (T0287)N163 (1f60B)S1180 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1f60B 1173 :VVEDDKV T0287 164 :F 1f60B 1181 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=21588 # 1gw5S.156.68 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 156 :VMTDEEVNF 1gw5S 69 :ICVDVNDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21589 # 1vr8A.156.64 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMT 1vr8A 77 :VYK T0287 160 :EEVNF 1vr8A 81 :EEAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21591 # 1zn6A.156.183 read from T0287.t04.many.frag # found chain 1zn6A in template set T0287 156 :VMTDEEVNF 1zn6A 184 :ILPDGAYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21592 # 1yj7A.156.127 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 156 :VMTDEEVNF 1yj7A 147 :VISSPEVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21593 # 2a90A.156.28 read from T0287.t04.many.frag # found chain 2a90A in template set T0287 156 :VMTDEEVNF 2a90A 50 :EFESRGKWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21594 # 1ysqA.156.150 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1ysqA 149 :S T0287 158 :TDEEVNF 1ysqA 151 :STSRLKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21596 # 1zh1A.156.96 read from T0287.t04.many.frag # found chain 1zh1A in template set T0287 156 :VMTDEEVNF 1zh1A 132 :GMTTDNVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21597 # 1uwcA.156.225 read from T0287.t04.many.frag # found chain 1uwcA in training set T0287 156 :VMTDEEVNF 1uwcA 226 :VCTGDEVQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21598 # 2czrA.156.75 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTDE 2czrA 68 :AIPDN T0287 162 :VNF 2czrA 74 :VFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21600 # 1ry9A.156.114 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 156 :VMTDEEVNF 1ry9A 103 :VIKDDYVHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21601 # 1yymG.156.84 read from T0287.t04.many.frag # found chain 1yymG in template set Warning: unaligning (T0287)E161 (1yymG)K232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1yymG)G235 because T (delta_L) conformation "forbidden" or filtered. T0287 156 :VMTDE 1yymG 227 :KCNDK T0287 162 :VN 1yymG 233 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=21603 # 1pv5A.156.223 read from T0287.t04.many.frag # found chain 1pv5A in training set Warning: unaligning (T0287)D159 (1pv5A)D224 because D (zeta) conformation "forbidden" or filtered. T0287 156 :VMT 1pv5A 221 :IDS T0287 160 :EEVNF 1pv5A 225 :DDIDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21605 # 1dmgA.156.16 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 156 :VMTDEEVNF 1dmgA 18 :EISDFVFNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21606 # 1xg8A.156.12 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 156 :VMTDEEVNF 1xg8A 4 :YGADVICAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21607 # 1uylA.156.187 read from T0287.t04.many.frag # found chain 1uylA in training set T0287 156 :VMTDEEVNF 1uylA 188 :LHLKEDQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21608 # 1yreA.156.177 read from T0287.t04.many.frag # found chain 1yreA in template set T0287 156 :VMTDEEVNF 1yreA 176 :SITDHEWPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21609 # 1jiwI.156.28 read from T0287.t04.many.frag # found chain 1jiwI in training set T0287 156 :VMTDEEVNF 1jiwI 29 :ELRDSEVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21610 # 1cfzA.157.76 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 157 :MTDE 1cfzA 77 :LRDE T0287 163 :NFY 1cfzA 83 :PAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21612 # 1zpvA.157.51 read from T0287.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 1zpvA 50 :SDEKQDFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21613 # 2c60A.157.72 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N163 (2c60A)I92 because E (beta_S) conformation "forbidden" or filtered. T0287 159 :DE 2c60A 88 :NE T0287 164 :FY 2c60A 93 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21615 # 1no5A.157.51 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 157 :M 1no5A 52 :I T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=21617 # 1wnaA.157.93 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 157 :MTDEEVNFY 1wnaA 94 :VSPGEMTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21618 # 1h5rA.157.178 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 157 :MTDEEVNFY 1h5rA 179 :YDNDVVQMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21619 # 12asA.157.122 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTD 12asA 123 :MGD T0287 161 :EV 12asA 127 :ER T0287 164 :FY 12asA 130 :FS Number of specific fragments extracted= 3 number of extra gaps= 2 total=21622 # 2b5iC.157.61 read from T0287.t04.many.frag # found chain 2b5iC in template set T0287 157 :MTDEEVNFY 2b5iC 95 :LQKKEIHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21623 # 1xkpC.157.96 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 157 :MTDEEVNFY 1xkpC 97 :LRLQELDTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21624 # 1f60B.157.61 read from T0287.t04.many.frag # found chain 1f60B in training set Warning: unaligning (T0287)N163 (1f60B)S1180 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :MTDEEV 1f60B 1174 :VEDDKV T0287 164 :FY 1f60B 1181 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21626 # 2a8eA.157.174 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)F164 (2a8eA)N182 because G (3-10) conformation "forbidden" or filtered. T0287 157 :MTDEEVN 2a8eA 175 :LQKEEVL T0287 165 :Y 2a8eA 183 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=21628 # 1t6aA.157.73 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 157 :MTD 1t6aA 73 :RTA T0287 161 :EVN 1t6aA 77 :EET Number of specific fragments extracted= 2 number of extra gaps= 2 total=21630 # 1gw5S.157.69 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 157 :MTDEEVNFY 1gw5S 70 :CVDVNDNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21631 # 1yj7A.157.128 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 157 :MTDEEVNFY 1yj7A 148 :ISSPEVNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21632 # 1yb3A.157.88 read from T0287.t04.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEV 1yb3A 81 :FPKEEL T0287 164 :FY 1yb3A 88 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21634 # 1zh1A.157.97 read from T0287.t04.many.frag # found chain 1zh1A in template set T0287 157 :MTDEEVNFY 1zh1A 133 :MTTDNVKCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21635 # 2a90A.157.29 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)D159 (2a90A)S53 because D (zeta) conformation "forbidden" or filtered. T0287 157 :MT 2a90A 51 :FE T0287 160 :EEVNFY 2a90A 54 :RGKWLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21637 # 1uwcA.157.226 read from T0287.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEV 1uwcA 227 :CTGDEV T0287 164 :FY 1uwcA 234 :CC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21639 # 1h70A.157.194 read from T0287.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)M157 (1h70A)E194 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 1h70A 195 :IPEEESYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21640 # 1xg8A.157.13 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)M157 (1xg8A)G5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1xg8A)V8 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :TD 1xg8A 6 :AD T0287 161 :EVNFY 1xg8A 9 :ICASC Number of specific fragments extracted= 2 number of extra gaps= 2 total=21642 # 1zn6A.157.184 read from T0287.t04.many.frag # found chain 1zn6A in template set T0287 157 :MTDEEVNFY 1zn6A 185 :LPDGAYGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=21643 # 1pbjA.157.101 read from T0287.t04.many.frag # found chain 1pbjA in training set Warning: unaligning (T0287)D159 (1pbjA)D104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1pbjA)D105 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MT 1pbjA 102 :EE T0287 161 :EVNFY 1pbjA 106 :EIIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21645 # 2czrA.157.76 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E160 (2czrA)N72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 157 :MTD 2czrA 69 :IPD T0287 162 :VNFY 2czrA 74 :VFYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21647 # 1vr8A.157.65 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MT 1vr8A 78 :YK T0287 160 :EEVNFY 1vr8A 81 :EEAKKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21649 # 1n9pA.157.151 read from T0287.t04.many.frag # found chain 1n9pA in training set T0287 157 :MTDEEVNFY 1n9pA 316 :YTEDEVLWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21650 # 1o97D.157.287 read from T0287.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)T158 (1o97D)T289 because G (3-10) conformation "forbidden" or filtered. T0287 157 :M 1o97D 288 :N T0287 159 :DEEVNFY 1o97D 290 :DPGASIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21652 # 1t3gA.157.19 read from T0287.t04.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFY 1t3gA 424 :GEEERFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21653 # 1m9zA.157.41 read from T0287.t04.many.frag # found chain 1m9zA in training set Warning: unaligning (T0287)E161 (1m9zA)N71 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDE 1m9zA 67 :KNDE T0287 162 :VNFY 1m9zA 72 :ITLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21655 # 1vr7A.157.93 read from T0287.t04.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 157 :MT 1vr7A 82 :TC T0287 162 :VNFY 1vr7A 87 :VDPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=21657 # 1kzfA.157.184 read from T0287.t04.many.frag # found chain 1kzfA in training set T0287 157 :MTDEEVNFY 1kzfA 165 :LTEKERIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21658 # 1cfzA.158.77 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 158 :TDE 1cfzA 78 :RDE T0287 163 :NFYA 1cfzA 83 :PALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21660 # 2c60A.158.73 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYA 2c60A 92 :ILLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=21662 # 1zpvA.158.52 read from T0287.t04.many.frag # found chain 1zpvA in template set T0287 158 :TDEEVNFYA 1zpvA 50 :SDEKQDFTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21663 # 1wnaA.158.94 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 158 :TDEEVNFYA 1wnaA 95 :SPGEMTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21664 # 1h5rA.158.179 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 158 :TDEEVNFYA 1h5rA 180 :DNDVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21665 # 1gw5S.158.70 read from T0287.t04.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)N163 (1gw5S)N76 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDEEV 1gw5S 71 :VDVND T0287 164 :FYA 1gw5S 77 :NLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21667 # 12asA.158.123 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TD 12asA 124 :GD T0287 161 :EV 12asA 127 :ER T0287 164 :FYA 12asA 130 :FST Number of specific fragments extracted= 3 number of extra gaps= 2 total=21670 # 1no5A.158.52 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=21671 # 1uwcA.158.227 read from T0287.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TDEEV 1uwcA 228 :TGDEV T0287 164 :FYA 1uwcA 234 :CCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21673 # 1t6aA.158.74 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)D159 (1t6aA)A75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 158 :T 1t6aA 74 :T T0287 160 :EEVN 1t6aA 76 :GEET T0287 166 :A 1t6aA 82 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=21676 # 1h70A.158.195 read from T0287.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)Y165 (1h70A)A202 because G (3-10) conformation "forbidden" or filtered. T0287 158 :TDEEVNF 1h70A 195 :IPEEESY T0287 166 :A 1h70A 203 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=21678 # 2a90A.158.30 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TD 2a90A 52 :ES T0287 162 :VNFYA 2a90A 56 :KWLPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21680 # 1xkpC.158.97 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 158 :TDEEVNFYA 1xkpC 98 :RLQELDTHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21681 # 1yj7A.158.129 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 158 :TDEEVNFYA 1yj7A 149 :SSPEVNLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21682 # 1f60B.158.62 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 158 :TDEEVNFYA 1f60B 1175 :EDDKVSLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21683 # 2b5iC.158.62 read from T0287.t04.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)Y165 (2b5iC)Y103 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDEEVNF 2b5iC 96 :QKKEIHL T0287 166 :A 2b5iC 104 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=21685 # 1zh1A.158.98 read from T0287.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDE 1zh1A 134 :TTD T0287 162 :VNFYA 1zh1A 138 :VKCPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21687 # 1xg8A.158.14 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)T158 (1xg8A)A6 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEVNFYA 1xg8A 7 :DVICASCV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21688 # 1pbjA.158.102 read from T0287.t04.many.frag # found chain 1pbjA in training set Warning: unaligning (T0287)D159 (1pbjA)D104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1pbjA)D105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1pbjA)G109 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :T 1pbjA 103 :E T0287 161 :EVN 1pbjA 106 :EII T0287 165 :YA 1pbjA 110 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21691 # 2btiA.158.37 read from T0287.t04.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)D159 (2btiA)P37 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :T 2btiA 36 :A T0287 160 :EEVNFYA 2btiA 38 :KEVSVHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21693 # 1t3gA.158.20 read from T0287.t04.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFYA 1t3gA 424 :GEEERFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21694 # 1l3lA.158.138 read from T0287.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)E161 (1l3lA)E142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1l3lA)D144 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDE 1l3lA 139 :LDR T0287 162 :V 1l3lA 143 :I T0287 164 :FYA 1l3lA 145 :AVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21697 # 1zn6A.158.185 read from T0287.t04.many.frag # found chain 1zn6A in template set T0287 158 :TDEEVNFYA 1zn6A 186 :PDGAYGDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21698 # 1o97D.158.288 read from T0287.t04.many.frag # found chain 1o97D in training set T0287 158 :TDEEVNFYA 1o97D 289 :TDPGASIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21699 # 1uylA.158.189 read from T0287.t04.many.frag # found chain 1uylA in training set T0287 158 :TDEEVNFYA 1uylA 190 :LKEDQTEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21700 # 1mkaA.158.59 read from T0287.t04.many.frag # found chain 1mkaA in template set T0287 158 :TDEEVNFYA 1mkaA 60 :INPDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21701 # 2a8eA.158.175 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 158 :TDEEVNFYA 2a8eA 176 :QKEEVLNMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21702 # 1ngmB.158.31 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)E160 (1ngmB)E468 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 158 :TD 1ngmB 466 :DD T0287 161 :EVNFY 1ngmB 469 :ELNAH Number of specific fragments extracted= 2 number of extra gaps= 2 total=21704 # 1lbu.158.162 read from T0287.t04.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :TDEEV 1lbu 163 :GAGSQ T0287 164 :FYA 1lbu 169 :FCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21706 # 1yzxA.158.189 read from T0287.t04.many.frag # found chain 1yzxA in template set Warning: unaligning (T0287)A166 (1yzxA)F198 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 1yzxA 190 :VDGQTHML Number of specific fragments extracted= 1 number of extra gaps= 1 total=21707 # 1gw5S.159.71 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 159 :DEEVNFYAN 1gw5S 72 :DVNDNNLAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21708 # 1cfzA.159.78 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 159 :DE 1cfzA 79 :DE T0287 163 :NFYAN 1cfzA 83 :PALFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21710 # 1wnaA.159.95 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 159 :DEEVNFYAN 1wnaA 96 :PGEMTALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21711 # 1l3lA.159.139 read from T0287.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)N163 (1l3lA)D144 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DEEV 1l3lA 140 :DREI T0287 164 :FYAN 1l3lA 145 :AVAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21713 # 1h5rA.159.180 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)N167 (1h5rA)N189 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEEVNFYA 1h5rA 181 :NDVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21714 # 2c60A.159.74 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYAN 2c60A 92 :ILLKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21716 # 1xkpC.159.98 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 159 :DEEVNFYAN 1xkpC 99 :LQELDTHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21717 # 1xg8A.159.15 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E160 (1xg8A)V8 because E (beta_S) conformation "forbidden" or filtered. T0287 159 :D 1xg8A 7 :D T0287 161 :EVNFYAN 1xg8A 9 :ICASCVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21719 # 12asA.159.124 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :D 12asA 125 :D T0287 161 :EV 12asA 127 :ER T0287 164 :FYAN 12asA 130 :FSTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21722 # 1h70A.159.196 read from T0287.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)D159 (1h70A)P196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1h70A)A202 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVNF 1h70A 197 :EEESY T0287 166 :AN 1h70A 203 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=21724 # 1zh1A.159.99 read from T0287.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E160 (1zh1A)D136 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :D 1zh1A 135 :T T0287 161 :EVNFYAN 1zh1A 137 :NVKCPCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21726 # 1xdnA.159.68 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1xdnA)D116 T0287 160 :EEVNFYAN 1xdnA 117 :PNENFFGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=21727 # 1zpvA.159.53 read from T0287.t04.many.frag # found chain 1zpvA in template set T0287 159 :DEEVNFYAN 1zpvA 51 :DEKQDFTYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21728 # 1f60B.159.63 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 159 :DEEVNFYAN 1f60B 1176 :DDKVSLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21729 # 2a90A.159.31 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (2a90A)Y60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2a90A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :D 2a90A 53 :S T0287 162 :VNFY 2a90A 56 :KWLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=21731 # 1yj7A.159.130 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 159 :DEEVNFYAN 1yj7A 150 :SPEVNLAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21732 # 1mkaA.159.60 read from T0287.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)D159 (1mkaA)N61 because E (beta_S) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1mkaA 62 :PDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=21733 # 1ngmB.159.32 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)D159 (1ngmB)D467 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1ngmB)E468 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EVNFYAN 1ngmB 469 :ELNAHLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21734 # 1lbu.159.163 read from T0287.t04.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :D 1lbu 164 :A T0287 161 :EVNFYAN 1lbu 166 :SQGFCAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21736 # 1t0tV.159.150 read from T0287.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)E160 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1t0tV)N155 because D (zeta) conformation "forbidden" or filtered. T0287 159 :D 1t0tV 151 :Q T0287 161 :EV 1t0tV 153 :ND T0287 164 :FYAN 1t0tV 156 :WYML Number of specific fragments extracted= 3 number of extra gaps= 2 total=21739 # 1uylA.159.190 read from T0287.t04.many.frag # found chain 1uylA in training set T0287 159 :DEEVNFYAN 1uylA 191 :KEDQTEYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21740 # 1uwcA.159.228 read from T0287.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEV 1uwcA 230 :DEV T0287 164 :FYAN 1uwcA 234 :CCEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21742 # 1o97D.159.289 read from T0287.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)D159 (1o97D)D290 because D (zeta) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1o97D 291 :PGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21743 # 2b5iC.159.63 read from T0287.t04.many.frag # found chain 2b5iC in template set T0287 159 :DEEVNFYAN 2b5iC 97 :KKEIHLYQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21744 # 1qo7A.159.366 read from T0287.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0287)N163 (1qo7A)G373 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEV 1qo7A 369 :HAEG T0287 164 :FYAN 1qo7A 374 :HFAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21746 # 1t6aA.159.75 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 159 :D 1t6aA 75 :A T0287 161 :EVN 1t6aA 77 :EET T0287 166 :AN 1t6aA 82 :DI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21749 # 1rcwA.159.102 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 159 :DEEVNFYAN 1rcwA 103 :PEELEAHEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21750 # 1no5A.159.53 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=21751 # 2a8eA.159.176 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 159 :DEEVNFYAN 2a8eA 177 :KEEVLNMNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21752 # 1i60A.159.248 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 159 :DEEVNFYAN 1i60A 249 :RPEYYKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21753 # 1gw5S.160.72 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 160 :EEVNFYANL 1gw5S 73 :VNDNNLAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21754 # 1h5rA.160.181 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 T0287 160 :EEVNFYAN 1h5rA 182 :DVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21755 # 1xg8A.160.16 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 160 :EEVNFYANL 1xg8A 8 :VICASCVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21756 # 1l3lA.160.140 read from T0287.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)N163 (1l3lA)D144 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEV 1l3lA 141 :REI T0287 164 :FYANL 1l3lA 145 :AVAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21758 # 2c60A.160.75 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N163 (2c60A)I92 because E (beta_S) conformation "forbidden" or filtered. T0287 160 :E 2c60A 89 :E T0287 164 :FYANL 2c60A 93 :LLKNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21760 # 1xkpC.160.99 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 160 :EEVNFYANL 1xkpC 100 :QELDTHGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21761 # 1xdnA.160.69 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 166 :ANL 1xdnA 123 :GYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21763 # 1t0tV.160.151 read from T0287.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)E160 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1t0tV)Y157 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EVNF 1t0tV 153 :NDNW T0287 166 :ANL 1t0tV 158 :MLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=21765 # 1zh1A.160.100 read from T0287.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :E 1zh1A 136 :D T0287 162 :VNFYANL 1zh1A 138 :VKCPCQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21767 # 1f60B.160.64 read from T0287.t04.many.frag # found chain 1f60B in training set Warning: unaligning (T0287)N163 (1f60B)S1180 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEV 1f60B 1177 :DKV T0287 164 :FYANL 1f60B 1181 :LDDLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21769 # 1lbu.160.164 read from T0287.t04.many.frag # found chain 1lbu in training set T0287 160 :EEVNFYANL 1lbu 165 :GSQGFCALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21770 # 1rcwA.160.103 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 160 :EEVNFYANL 1rcwA 104 :EELEAHEPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21771 # 1mkaA.160.61 read from T0287.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 T0287 160 :EEVNFYAN 1mkaA 62 :PDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=21772 # 1qnrA.160.129 read from T0287.t04.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)E160 (1qnrA)N130 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1qnrA 131 :ATTWYTNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21773 # 12asA.160.125 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EV 12asA 127 :ER T0287 164 :FYANL 12asA 130 :FSTLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=21775 # 1h70A.160.197 read from T0287.t04.many.frag # found chain 1h70A in training set T0287 160 :EEVNFYANL 1h70A 197 :EEESYAANC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21776 # 1ngmB.160.33 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)N167 (1ngmB)L475 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1ngmB 468 :EELNAHL T0287 168 :L 1ngmB 476 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=21778 # 1zgkA.160.240 read from T0287.t04.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E160 (1zgkA)E542 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 T0287 163 :NFYANL 1zgkA 545 :TFVAPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=21779 # 1yj7A.160.131 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 160 :EEVNFYANL 1yj7A 151 :PEVNLAPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21780 # 2ex0A.160.376 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 160 :EEVNFYANL 2ex0A 401 :SQVIFWDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21781 # 1fo8A.160.72 read from T0287.t04.many.frag # found chain 1fo8A in training set T0287 160 :EEVNFYANL 1fo8A 177 :DHRKFQGYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21782 # 2b5iC.160.64 read from T0287.t04.many.frag # found chain 2b5iC in template set T0287 160 :EEVNFYANL 2b5iC 98 :KEIHLYQTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21783 # 1wnaA.160.96 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 160 :EEVNFYANL 1wnaA 97 :GEMTALLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21784 # 1o97D.160.290 read from T0287.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1o97D)K300 T0287 160 :EEVNFYAN 1o97D 291 :PGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21785 # 1dmgA.160.20 read from T0287.t04.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEV 1dmgA 22 :FVF T0287 164 :FYANL 1dmgA 26 :IDPNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21787 # 1zavA.160.126 read from T0287.t04.many.frag # found chain 1zavA in template set T0287 160 :EEVNFYANL 1zavA 126 :EEVENIAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21788 # 1i60A.160.249 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 160 :EEVNFYANL 1i60A 250 :PEYYKLTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21789 # 1dqzA.160.42 read from T0287.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1dqzA 45 :DYNGWDIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21790 # 1vk4A.160.186 read from T0287.t04.many.frag # found chain 1vk4A in template set T0287 160 :EEVNFYANL 1vk4A 175 :REAETLTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21791 # 1h8eG.160.187 read from T0287.t04.many.frag # found chain 1h8eG in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h8eG)D197 T0287 160 :EEVNFYAN 1h8eG 188 :ESMSIYDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=21792 # 1gw5S.161.73 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 161 :EVNFYANLK 1gw5S 74 :NDNNLAYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21793 # 1xg8A.161.17 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 161 :EVNFYANLK 1xg8A 9 :ICASCVNAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21794 # 1h5rA.161.182 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 161 :EVNFYAN 1h5rA 183 :VVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21795 # 2c60A.161.76 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 2c60A 92 :ILLK T0287 168 :LK 2c60A 97 :QD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21797 # 1l3lA.161.141 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 161 :EVNFYANLK 1l3lA 142 :EIDAVAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21798 # 1t0tV.161.152 read from T0287.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)Y165 (1t0tV)Y157 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EVNF 1t0tV 153 :NDNW T0287 166 :ANLK 1t0tV 158 :MLSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21800 # 1qnrA.161.130 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 161 :EVNFYANLK 1qnrA 131 :ATTWYTNTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21801 # 1xdnA.161.70 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)F164 (1xdnA)F121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EVN 1xdnA 118 :NEN T0287 165 :Y 1xdnA 122 :F T0287 167 :NLK 1xdnA 124 :YHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21804 # 1dmgA.161.21 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 161 :EVNFYANLK 1dmgA 23 :VFNIDPNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21805 # 1rcwA.161.104 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 161 :EVNFYANLK 1rcwA 105 :ELEAHEPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21806 # 2ex0A.161.377 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 161 :EVNFYANLK 2ex0A 402 :QVIFWDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21807 # 1fo8A.161.73 read from T0287.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)N163 (1fo8A)K180 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EV 1fo8A 178 :HR T0287 164 :FYANLK 1fo8A 181 :FQGYYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21809 # 1lbu.161.165 read from T0287.t04.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EV 1lbu 166 :SQ T0287 164 :FYANLK 1lbu 169 :FCALAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21811 # 1josA.161.60 read from T0287.t04.many.frag # found chain 1josA in training set T0287 161 :EVNFYANLK 1josA 61 :EMAIEQGMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21812 # 1ngmB.161.34 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)N167 (1ngmB)L475 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1ngmB 469 :ELNAHL T0287 168 :LK 1ngmB 476 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21814 # 1mkaA.161.62 read from T0287.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1mkaA)F71 T0287 161 :EVNFYAN 1mkaA 63 :DLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=21815 # 1vk4A.161.187 read from T0287.t04.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1vk4A 176 :EAETLT T0287 168 :LK 1vk4A 183 :TN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21817 # 1hp1A.161.297 read from T0287.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1hp1A)R332 Warning: unaligning (T0287)K169 (1hp1A)A340 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 1hp1A 333 :VLYTPEI Number of specific fragments extracted= 1 number of extra gaps= 2 total=21818 # 1xkpC.161.100 read from T0287.t04.many.frag # found chain 1xkpC in training set Warning: unaligning (T0287)N163 (1xkpC)D103 because E (beta_S) conformation "forbidden" or filtered. T0287 161 :EV 1xkpC 101 :EL T0287 164 :FYANLK 1xkpC 104 :THGLQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21820 # 1e0tA.161.314 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LK 1e0tA 322 :LE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21821 # 1dqzA.161.43 read from T0287.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYAN 1dqzA 46 :YNGWDIN T0287 169 :K 1dqzA 54 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=21823 # 1rz2A.161.143 read from T0287.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EVN 1rz2A 144 :DGS T0287 165 :YANLK 1rz2A 148 :FGSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21825 # 1zdyA.161.127 read from T0287.t04.many.frag # found chain 1zdyA in template set T0287 161 :EVNFYANLK 1zdyA 128 :NMPGVAELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21826 # 1t0hB.161.87 read from T0287.t04.many.frag # found chain 1t0hB in template set T0287 161 :EVNFYANLK 1t0hB 289 :RSNTRSSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21827 # 1thtA.161.239 read from T0287.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)N167 (1thtA)N246 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYA 1thtA 240 :SHDLGE T0287 168 :LK 1thtA 247 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21829 # 1zh1A.161.101 read from T0287.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)K169 (1zh1A)P145 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1zh1A 137 :NVKCPCQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21830 # 1i60A.161.250 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 161 :EVNFYANLK 1i60A 251 :EYYKLTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21831 # 1zgkA.161.241 read from T0287.t04.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 Warning: unaligning (T0287)A166 (1zgkA)A548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1zgkA)P549 because P (beta_P) conformation "forbidden" or filtered. T0287 163 :NFY 1zgkA 545 :TFV T0287 168 :LK 1zgkA 550 :MK Number of specific fragments extracted= 2 number of extra gaps= 2 total=21833 # 1zavA.161.127 read from T0287.t04.many.frag # found chain 1zavA in template set T0287 161 :EVNFYANLK 1zavA 127 :EVENIAKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21834 # 12asA.161.126 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EV 12asA 127 :ER T0287 164 :FYANLK 12asA 130 :FSTLKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21836 # 1xg8A.162.18 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 1xg8A 10 :CASCVNA T0287 170 :T 1xg8A 18 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=21838 # 1gw5S.162.74 read from T0287.t04.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)N163 (1gw5S)N76 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 1gw5S 75 :D T0287 164 :FYANLKT 1gw5S 77 :NLAYLEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21840 # 2c60A.162.77 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 2c60A 92 :ILLK T0287 168 :LKT 2c60A 97 :QDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21842 # 1h5rA.162.183 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)N167 (1h5rA)N189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 162 :VNFYA 1h5rA 184 :VQMAK T0287 170 :T 1h5rA 192 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=21844 # 2bgcA.162.205 read from T0287.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)N163 (2bgcA)F206 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 2bgcA 205 :C T0287 164 :FYANLKT 2bgcA 207 :YVQNLDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21846 # 1dmgA.162.22 read from T0287.t04.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. T0287 162 :V 1dmgA 24 :F T0287 164 :FYANLKT 1dmgA 26 :IDPNYDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21848 # 1e0tA.162.315 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKT 1e0tA 322 :LEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21849 # 1josA.162.61 read from T0287.t04.many.frag # found chain 1josA in training set T0287 162 :VNFYANLKT 1josA 62 :MAIEQGMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21850 # 1l3lA.162.142 read from T0287.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)N163 (1l3lA)D144 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 1l3lA 143 :I T0287 164 :FYANLKT 1l3lA 145 :AVAAAAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21852 # 1vk4A.162.188 read from T0287.t04.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :VNFYA 1vk4A 177 :AETLT T0287 168 :LKT 1vk4A 183 :TND Number of specific fragments extracted= 2 number of extra gaps= 1 total=21854 # 1qnrA.162.131 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 162 :VNFYANLKT 1qnrA 132 :TTWYTNTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21855 # 1rcwA.162.105 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 162 :VNFYANLKT 1rcwA 106 :LEAHEPSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21856 # 1thtA.162.240 read from T0287.t04.many.frag # found chain 1thtA in template set T0287 162 :VNFYANLKT 1thtA 241 :HDLGENLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21857 # 2ex0A.162.378 read from T0287.t04.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)K169 (2ex0A)K410 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 2ex0A 403 :VIFWDSL T0287 170 :T 2ex0A 411 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=21859 # 1t0tV.162.153 read from T0287.t04.many.frag # found chain 1t0tV in training set T0287 162 :VNFYANLKT 1t0tV 154 :DNWYMLSME Number of specific fragments extracted= 1 number of extra gaps= 0 total=21860 # 1t0hB.162.88 read from T0287.t04.many.frag # found chain 1t0hB in template set Warning: unaligning (T0287)N167 (1t0hB)S295 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYA 1t0hB 290 :SNTRS T0287 168 :LKT 1t0hB 296 :LAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21862 # 1rz2A.162.144 read from T0287.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)V162 (1rz2A)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 163 :N 1rz2A 146 :S T0287 165 :YANLKT 1rz2A 148 :FGSLKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=21864 # 1zavA.162.128 read from T0287.t04.many.frag # found chain 1zavA in template set T0287 162 :VNFYANLKT 1zavA 128 :VENIAKLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21865 # 1hp1A.162.298 read from T0287.t04.many.frag # found chain 1hp1A in training set T0287 162 :VNFYANLKT 1hp1A 333 :VLYTPEIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21866 # 1xdnA.162.71 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)N163 (1xdnA)N120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :V 1xdnA 119 :E T0287 164 :F 1xdnA 121 :F T0287 167 :NLKT 1xdnA 124 :YHIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21869 # 1g5aA.162.105 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 162 :VNFYANLKT 1g5aA 106 :DLFAGDLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21870 # 1zdyA.162.128 read from T0287.t04.many.frag # found chain 1zdyA in template set T0287 162 :VNFYANLKT 1zdyA 129 :MPGVAELSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21871 # 1dqzA.162.44 read from T0287.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFYAN 1dqzA 47 :NGWDIN T0287 169 :KT 1dqzA 54 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21873 # 1fo8A.162.74 read from T0287.t04.many.frag # found chain 1fo8A in training set T0287 162 :VNFYANLKT 1fo8A 179 :RKFQGYYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21874 # 2ex0A.162.177 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 162 :VNFYANLKT 2ex0A 202 :TDYFEKAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21875 # 1ngmB.162.35 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 162 :VNFY 1ngmB 470 :LNAH T0287 167 :NLKT 1ngmB 475 :LNEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21877 # 1i60A.162.251 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 162 :VNFYANLKT 1i60A 252 :YYKLTAEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21878 # 1txoA.162.198 read from T0287.t04.many.frag # found chain 1txoA in template set T0287 162 :VNFYANLKT 1txoA 202 :ILEALQIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21879 # 1qgiA.162.120 read from T0287.t04.many.frag # found chain 1qgiA in training set T0287 162 :VNFYANLKT 1qgiA 121 :KVFCGKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21880 # 2ar0A.162.485 read from T0287.t04.many.frag # found chain 2ar0A in template set T0287 162 :VNFYANLKT 2ar0A 486 :VLAAEAMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21881 # 1gw5S.163.75 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 163 :NFYANLKTI 1gw5S 76 :NNLAYLEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21882 # 1xg8A.163.19 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 163 :NFYANLKTI 1xg8A 11 :ASCVNAPTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21883 # 1josA.163.62 read from T0287.t04.many.frag # found chain 1josA in training set T0287 163 :NFYANLKTI 1josA 63 :AIEQGMKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21884 # 1e0tA.163.316 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTI 1e0tA 322 :LEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21885 # 2c60A.163.78 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)N163 (2c60A)I92 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (2c60A)K95 because G (3-10) conformation "forbidden" or filtered. T0287 164 :FY 2c60A 93 :LL T0287 167 :NLKTI 2c60A 96 :NQDDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21887 # 2bgcA.163.206 read from T0287.t04.many.frag # found chain 2bgcA in template set T0287 163 :NFYANLKTI 2bgcA 206 :FYVQNLDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21888 # 1dmgA.163.23 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 163 :NFYANLKTI 1dmgA 25 :NIDPNYDVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=21889 # 1h5rA.163.184 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)N167 (1h5rA)N189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 163 :NFYA 1h5rA 185 :QMAK T0287 170 :TI 1h5rA 192 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21891 # 1g5aA.163.106 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 1g5aA 107 :LFAG T0287 168 :LKTI 1g5aA 112 :LKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21893 # 1uf3A.163.12 read from T0287.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)N163 (1uf3A)N13 because L (left) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1uf3A 14 :PMGDLEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21894 # 2ex0A.163.178 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 163 :NFYANLKTI 2ex0A 203 :DYFEKAEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21895 # 1rcwA.163.106 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 163 :NFYANLKTI 1rcwA 107 :EAHEPSEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21896 # 1l3lA.163.143 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 163 :NFYANLKTI 1l3lA 144 :DAVAAAATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21897 # 1thtA.163.241 read from T0287.t04.many.frag # found chain 1thtA in template set T0287 163 :NFYANLKTI 1thtA 242 :DLGENLVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21898 # 1xdnA.163.72 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NFY 1xdnA 120 :NFF T0287 167 :NLKTI 1xdnA 124 :YHILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21900 # 1vk4A.163.189 read from T0287.t04.many.frag # found chain 1vk4A in template set T0287 163 :NFYANLKTI 1vk4A 178 :ETLTGTNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21901 # 1vliA.163.260 read from T0287.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE at template residue (1vliA)S249 T0287 164 :FYANLKTI 1vliA 250 :FALNPDEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21902 # 1fm0D.163.19 read from T0287.t04.many.frag # found chain 1fm0D in training set Warning: unaligning (T0287)A166 (1fm0D)A23 because N (gamma') conformation "forbidden" or filtered. T0287 163 :NFY 1fm0D 20 :EVA T0287 167 :NLKTI 1fm0D 24 :DFPTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21904 # 1rz2A.163.145 read from T0287.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)Y165 (1rz2A)F148 because G (3-10) conformation "forbidden" or filtered. T0287 163 :NF 1rz2A 146 :SM T0287 166 :ANLKTI 1rz2A 149 :GSLKKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21906 # 1wo8A.163.104 read from T0287.t04.many.frag # found chain 1wo8A in template set T0287 163 :NFYANLKTI 1wo8A 105 :PLATNLVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21907 # 1uhvA.163.73 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 163 :NFYANLKTI 1uhvA 74 :KPFYNFTYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21908 # 1t0hB.163.89 read from T0287.t04.many.frag # found chain 1t0hB in template set T0287 163 :NFYANLKTI 1t0hB 291 :NTRSSLAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21909 # 1qnrA.163.132 read from T0287.t04.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)A166 (1qnrA)T136 because G (3-10) conformation "forbidden" or filtered. T0287 163 :NFY 1qnrA 133 :TWY T0287 167 :NLKTI 1qnrA 137 :NTAAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21911 # 1rkuA.163.62 read from T0287.t04.many.frag # found chain 1rkuA in training set T0287 163 :NFYANLKTI 1rkuA 62 :EVIATLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21912 # 1eokA.163.56 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 163 :NFYANLKTI 1eokA 57 :GMMGSFKSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21913 # 1txoA.163.199 read from T0287.t04.many.frag # found chain 1txoA in template set T0287 163 :NFYANLKTI 1txoA 203 :LEALQIPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21914 # 1fo8A.163.75 read from T0287.t04.many.frag # found chain 1fo8A in training set T0287 163 :NFYANLKTI 1fo8A 180 :KFQGYYKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21915 # 1t77A.163.316 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 163 :NFYANLKTI 1t77A 2392 :ELPPWAKTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21916 # 2bw4A.163.190 read from T0287.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bw4A)Y196 T0287 163 :NFYA 2bw4A 191 :GNYK T0287 169 :KTI 2bw4A 197 :ETP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21918 # 1f06A.163.86 read from T0287.t04.many.frag # found chain 1f06A in template set T0287 163 :NFYANLKTI 1f06A 87 :DTYDNHRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21919 # 1xg8A.164.20 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 164 :FYANLKTIE 1xg8A 12 :SCVNAPTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21920 # 1josA.164.63 read from T0287.t04.many.frag # found chain 1josA in training set T0287 164 :FYANLKTIE 1josA 64 :IEQGMKGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21921 # 1gw5S.164.76 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 164 :FYANLKTIE 1gw5S 77 :NLAYLEAIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21922 # 1e0tA.164.317 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIE 1e0tA 322 :LEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21923 # 1dmgA.164.24 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 164 :FYANLKTIE 1dmgA 26 :IDPNYDVMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=21924 # 1xdnA.164.73 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)F164 (1xdnA)F121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIE 1xdnA 124 :YHILID Number of specific fragments extracted= 1 number of extra gaps= 1 total=21925 # 1uf3A.164.13 read from T0287.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :FY 1uf3A 14 :PM T0287 167 :NLKTIE 1uf3A 17 :DLEALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21927 # 2c60A.164.79 read from T0287.t04.many.frag # found chain 2c60A in template set T0287 164 :FYANLKTIE 2c60A 93 :LLKNQDDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21928 # 1t77A.164.317 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 164 :FYANLKTIE 1t77A 2393 :LPPWAKTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21929 # 2bgcA.164.207 read from T0287.t04.many.frag # found chain 2bgcA in template set T0287 164 :FYANLKTIE 2bgcA 207 :YVQNLDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21930 # 1g5aA.164.107 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 164 :FY 1g5aA 108 :FA T0287 168 :LKTIE 1g5aA 112 :LKGLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21932 # 1eokA.164.57 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 164 :FYANLKTIE 1eokA 58 :MMGSFKSYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21933 # 2ex0A.164.179 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 164 :FYANLKTIE 2ex0A 204 :YFEKAEFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21934 # 1wo8A.164.105 read from T0287.t04.many.frag # found chain 1wo8A in template set T0287 164 :FYANLKTIE 1wo8A 106 :LATNLVAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21935 # 1vliA.164.261 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 164 :FYANLKTIE 1vliA 250 :FALNPDELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21936 # 1thtA.164.242 read from T0287.t04.many.frag # found chain 1thtA in template set T0287 164 :FYANLKTIE 1thtA 243 :LGENLVVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21937 # 1f06A.164.87 read from T0287.t04.many.frag # found chain 1f06A in template set T0287 164 :FYANLKTIE 1f06A 88 :TYDNHRDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21938 # 1wa5C.164.75 read from T0287.t04.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)Y165 (1wa5C)L77 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1wa5C)P79 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :F 1wa5C 76 :H T0287 166 :A 1wa5C 78 :L T0287 168 :LKTIE 1wa5C 80 :ANNVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=21941 # 1rcwA.164.107 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 164 :FYANLKTIE 1rcwA 108 :AHEPSEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21942 # 2ak3A.164.164 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 164 :FYANLKTIE 2ak3A 164 :PETVVKRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21943 # 2exrA.164.447 read from T0287.t04.many.frag # found chain 2exrA in template set T0287 164 :FYANLKTIE 2exrA 448 :PCAKVSSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21944 # 1t0hB.164.90 read from T0287.t04.many.frag # found chain 1t0hB in template set Warning: unaligning (T0287)N167 (1t0hB)S295 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYA 1t0hB 292 :TRS T0287 168 :LKTIE 1t0hB 296 :LAEVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21946 # 1xrjA.164.210 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 164 :FYANLKTIE 1xrjA 211 :GADNLVAIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21947 # 1vjuA.164.142 read from T0287.t04.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1vjuA)Y143 T0287 165 :YANLKTIE 1vjuA 144 :YAVEEDCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=21948 # 1uhvA.164.74 read from T0287.t04.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)A166 (1uhvA)Y77 because D (zeta) conformation "forbidden" or filtered. T0287 164 :FY 1uhvA 75 :PF T0287 167 :NLKTIE 1uhvA 78 :NFTYID Number of specific fragments extracted= 2 number of extra gaps= 1 total=21950 # 1l3lA.164.144 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 164 :FYANLKTIE 1l3lA 145 :AVAAAATIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21951 # 1f35A.164.113 read from T0287.t04.many.frag # found chain 1f35A in template set T0287 164 :FYANLKTIE 1f35A 115 :MDWNEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21952 # 2fb5A.164.42 read from T0287.t04.many.frag # found chain 2fb5A in template set T0287 164 :FYANLKTIE 2fb5A 43 :ILCKMEDIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21953 # 1h5rA.164.185 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 164 :FYAN 1h5rA 186 :MAKN T0287 170 :TIE 1h5rA 192 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21955 # 2al2A.164.213 read from T0287.t04.many.frag # found chain 2al2A in template set Warning: unaligning (T0287)A166 (2al2A)P216 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FY 2al2A 214 :VA T0287 167 :NLKTIE 2al2A 217 :NIQTAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21957 # 1xg8A.165.21 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 165 :YANLKTIEQ 1xg8A 13 :CVNAPTSKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21958 # 1josA.165.64 read from T0287.t04.many.frag # found chain 1josA in training set T0287 165 :YANLKTIEQ 1josA 65 :EQGMKGLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21959 # 1gw5S.165.77 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 165 :YANLKTIEQ 1gw5S 78 :LAYLEAIHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21960 # 1e0tA.165.318 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21961 # 1t77A.165.318 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 165 :YANLKTIEQ 1t77A 2394 :PPWAKTSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21962 # 1eokA.165.58 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)T170 (1eokA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :YANLK 1eokA 59 :MGSFK T0287 171 :IEQ 1eokA 65 :YKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21964 # 1uf3A.165.14 read from T0287.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. T0287 166 :ANLKTIEQ 1uf3A 16 :GDLEALEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21965 # 1vliA.165.262 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 165 :YANLKTIEQ 1vliA 251 :ALNPDELKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21966 # 2ex0A.165.180 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 165 :YANLKTIEQ 2ex0A 205 :FEKAEFLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21967 # 1dmgA.165.25 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 165 :YANLKTIEQ 1dmgA 27 :DPNYDVMWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21968 # 1g5aA.165.108 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1g5aA 109 :A T0287 168 :LKTIEQ 1g5aA 112 :LKGLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21970 # 2exrA.165.448 read from T0287.t04.many.frag # found chain 2exrA in template set T0287 165 :YANLKTIEQ 2exrA 449 :CAKVSSVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21971 # 2c60A.165.80 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)A166 (2c60A)K95 because G (3-10) conformation "forbidden" or filtered. T0287 165 :Y 2c60A 94 :L T0287 167 :NLKTIEQ 2c60A 96 :NQDDLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21973 # 1wa5C.165.76 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 165 :YANLKTIEQ 1wa5C 77 :LLPANNVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21974 # 1xdnA.165.74 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 166 :ANLKTIEQ 1xdnA 123 :GYHILIDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21975 # 2ak3A.165.165 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 165 :YANLKTIEQ 2ak3A 165 :ETVVKRLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21976 # 2bgcA.165.208 read from T0287.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)N167 (2bgcA)N210 because D (zeta) conformation "forbidden" or filtered. T0287 165 :YA 2bgcA 208 :VQ T0287 168 :LKTIEQ 2bgcA 211 :LDYLKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21978 # 1e4fT.165.163 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 165 :YANLKTIEQ 1e4fT 164 :VVPLKVYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=21979 # 1wo8A.165.106 read from T0287.t04.many.frag # found chain 1wo8A in template set T0287 165 :YANLKTIEQ 1wo8A 107 :ATNLVAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21980 # 1f06A.165.88 read from T0287.t04.many.frag # found chain 1f06A in template set T0287 165 :YANLKTIEQ 1f06A 89 :YDNHRDIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21981 # 1vjuA.165.143 read from T0287.t04.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)A166 (1vjuA)A145 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 1vjuA 144 :Y T0287 167 :NLKTIEQ 1vjuA 146 :VEEDCRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21983 # 1xrjA.165.211 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 165 :YANLKTIEQ 1xrjA 212 :ADNLVAINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21984 # 1auoA.165.77 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 165 :YANLKTIEQ 1auoA 78 :SISLEELEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21985 # 2fb5A.165.43 read from T0287.t04.many.frag # found chain 2fb5A in template set T0287 165 :YANLKTIEQ 2fb5A 44 :LCKMEDIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21986 # 1rcwA.165.108 read from T0287.t04.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YA 1rcwA 109 :HE T0287 168 :LKTIEQ 1rcwA 112 :SEAAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21988 # 1ryiA.165.281 read from T0287.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1ryiA)D271 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 165 :Y 1ryiA 269 :T T0287 168 :LKTIEQ 1ryiA 272 :LGGLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=21990 # 1wdaA.165.535 read from T0287.t04.many.frag # found chain 1wdaA in template set T0287 165 :YANLKTIEQ 1wdaA 529 :ILSNKTLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21991 # 2al2A.165.214 read from T0287.t04.many.frag # found chain 2al2A in template set T0287 165 :YANLKTIEQ 2al2A 215 :APNIQTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21992 # 1i60A.165.254 read from T0287.t04.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)A166 (1i60A)T256 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 1i60A 255 :L T0287 167 :NLKTIEQ 1i60A 257 :AEEAIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21994 # 1f35A.165.114 read from T0287.t04.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1f35A 116 :D T0287 167 :NLKTIEQ 1f35A 118 :NEADALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21996 # 1gw5S.166.78 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 166 :ANLKTIEQY 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21997 # 1josA.166.65 read from T0287.t04.many.frag # found chain 1josA in training set T0287 166 :ANLKTIEQY 1josA 66 :QGMKGLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21998 # 1xg8A.166.22 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 166 :ANLKTIEQY 1xg8A 14 :VNAPTSKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21999 # 1e0tA.166.319 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22000 # 1t77A.166.319 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 166 :ANLKTIEQY 1t77A 2395 :PWAKTSEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22001 # 1eokA.166.59 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)T170 (1eokA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0287 166 :ANLK 1eokA 60 :GSFK T0287 171 :IEQY 1eokA 65 :YKDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22003 # 1rttA.166.57 read from T0287.t04.many.frag # found chain 1rttA in training set T0287 166 :ANLKTIEQY 1rttA 58 :GFPPAVERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22004 # 1uf3A.166.15 read from T0287.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1uf3A 17 :DLEALEKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22005 # 2ak3A.166.166 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 166 :ANLKTIEQY 2ak3A 166 :TVVKRLKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22006 # 1ynbA.166.110 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 166 :ANLKTIEQY 1ynbA 111 :PDFSDVEVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22007 # 1xrjA.166.212 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 166 :ANLKTIEQY 1xrjA 213 :DNLVAINLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22008 # 2ex0A.166.181 read from T0287.t04.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)I171 (2ex0A)L211 because G (3-10) conformation "forbidden" or filtered. T0287 166 :ANLKT 2ex0A 206 :EKAEF T0287 172 :EQY 2ex0A 212 :QPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22010 # 1wa5C.166.77 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 166 :ANLKTIEQY 1wa5C 78 :LPANNVELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22011 # 1auoA.166.78 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 166 :ANLKTIEQY 1auoA 79 :ISLEELEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22012 # 1vjuA.166.144 read from T0287.t04.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)A166 (1vjuA)A145 because P (beta_P) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1vjuA 146 :VEEDCRDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22013 # 1ro7A.166.106 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 166 :ANLKTIEQY 1ro7A 107 :DFFKQLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22014 # 2exrA.166.449 read from T0287.t04.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)N167 (2exrA)K451 because P (beta_P) conformation "forbidden" or filtered. T0287 166 :A 2exrA 450 :A T0287 168 :LKTIEQY 2exrA 452 :VSSVEKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22016 # 1vliA.166.263 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 166 :ANLKTIEQY 1vliA 252 :LNPDELKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22017 # 1xdnA.166.75 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1xdnA 124 :YHILIDEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22018 # 2a2mA.166.144 read from T0287.t04.many.frag # found chain 2a2mA in template set Warning: unaligning (T0287)A166 (2a2mA)I133 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2a2mA)P134 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQY 2a2mA 135 :GTDIKDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=22019 # 1g5aA.166.109 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1g5aA 111 :DLKGLKDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22020 # 1v0wA.166.383 read from T0287.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)S391 T0287 167 :NLKTIEQY 1v0wA 392 :QIKSLSEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22021 # 1e4fT.166.164 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 166 :ANLKTIEQY 1e4fT 165 :VPLKVYEMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22022 # 1i60A.166.255 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 166 :ANLKTIEQY 1i60A 256 :TAEEAIQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22023 # 2fb5A.166.44 read from T0287.t04.many.frag # found chain 2fb5A in template set T0287 166 :ANLKTIEQY 2fb5A 45 :CKMEDIHHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22024 # 1dmgA.166.26 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 166 :ANLKTIEQY 1dmgA 28 :PNYDVMWRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22025 # 1rcwA.166.109 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 166 :ANLKTIEQY 1rcwA 110 :EPSEAAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22026 # 2fb0A.166.68 read from T0287.t04.many.frag # found chain 2fb0A in template set T0287 166 :ANLKTIEQY 2fb0A 66 :EKTAHFAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22027 # 1t8kA.166.59 read from T0287.t04.many.frag # found chain 1t8kA in training set T0287 166 :ANLKTIEQY 1t8kA 60 :EKITTVQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22028 # 1wwpA.166.97 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 166 :ANLKTIEQY 1wwpA 98 :AIFRRLPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22029 # 1josA.167.66 read from T0287.t04.many.frag # found chain 1josA in training set T0287 167 :NLKTIEQYN 1josA 67 :GMKGLEKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22030 # 1gw5S.167.79 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 167 :NLKTIEQYN 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22031 # 1xg8A.167.23 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 167 :NLKTIEQYN 1xg8A 15 :NAPTSKDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22032 # 1t77A.167.320 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 167 :NLKTIEQYN 1t77A 2396 :WAKTSEEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22033 # 1vjuA.167.145 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 167 :NLKTIEQYN 1vjuA 146 :VEEDCRDFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22034 # 1rttA.167.58 read from T0287.t04.many.frag # found chain 1rttA in training set T0287 167 :NLKTIEQYN 1rttA 59 :FPPAVERFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22035 # 1ifqA.167.36 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 167 :NLKTIEQYN 1ifqA 26 :SGRDLQQYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22036 # 1auoA.167.79 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 167 :NLKTIEQYN 1auoA 80 :SLEELEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22037 # 1e0tA.167.320 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22038 # 2ak3A.167.167 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 167 :NLKTIEQYN 2ak3A 167 :VVKRLKAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22039 # 1uf3A.167.16 read from T0287.t04.many.frag # found chain 1uf3A in template set T0287 167 :NLKTIEQYN 1uf3A 17 :DLEALEKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22040 # 2exrA.167.450 read from T0287.t04.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)N167 (2exrA)K451 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2exrA 452 :VSSVEKMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22041 # 1wa5C.167.78 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 167 :NLKTIEQYN 1wa5C 79 :PANNVELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22042 # 1eokA.167.60 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 167 :NLKTIEQYN 1eokA 61 :SFKSYKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22043 # 1vliA.167.264 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 167 :NLKTIEQYN 1vliA 253 :NPDELKEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22044 # 1ynbA.167.111 read from T0287.t04.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)N167 (1ynbA)D112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I171 (1ynbA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 168 :LKT 1ynbA 113 :FSD T0287 172 :EQYN 1ynbA 117 :EVYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=22046 # 1xrjA.167.213 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 167 :NLKTIEQYN 1xrjA 214 :NLVAINLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22047 # 2a2mA.167.145 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 167 :NLKTIEQYN 2a2mA 134 :PGTDIKDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22048 # 1e4fT.167.165 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 167 :NLKTIEQYN 1e4fT 166 :PLKVYEMFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22049 # 1xdnA.167.76 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 167 :NLKTIEQYN 1xdnA 124 :YHILIDEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22050 # 1i60A.167.256 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 167 :NLKTIEQYN 1i60A 257 :AEEAIQTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22051 # 1tr9A.167.310 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 167 :NLKTIEQYN 1tr9A 310 :RLERWQQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22052 # 1ryiA.167.283 read from T0287.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 168 :LKTIEQYN 1ryiA 272 :LGGLESVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22053 # 1wwpA.167.98 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 167 :NLKTIEQYN 1wwpA 99 :IFRRLPDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22054 # 2cxaA.167.216 read from T0287.t04.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)N167 (2cxaA)C200 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2cxaA 201 :EIPRRDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22055 # 1ro7A.167.107 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 167 :NLKTIEQYN 1ro7A 108 :FFKQLKDFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22056 # 1itxA.167.143 read from T0287.t04.many.frag # found chain 1itxA in training set T0287 167 :NLKTIEQYN 1itxA 176 :TAATREVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22057 # 7a3hA.167.240 read from T0287.t04.many.frag # found chain 7a3hA in training set T0287 167 :NLKTIEQYN 7a3hA 241 :FLDEAQVWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22058 # 1wzdA.167.164 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 167 :NLKTIEQYN 1wzdA 165 :GIAKLKVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22059 # 2fb5A.167.45 read from T0287.t04.many.frag # found chain 2fb5A in template set T0287 167 :NLKTIEQYN 2fb5A 46 :KMEDIHHML Number of specific fragments extracted= 1 number of extra gaps= 0 total=22060 # 1ifqA.168.37 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 168 :LKTIEQYND 1ifqA 27 :GRDLQQYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22061 # 1josA.168.67 read from T0287.t04.many.frag # found chain 1josA in training set T0287 168 :LKTIEQYND 1josA 68 :MKGLEKASP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22062 # 1ro7A.168.108 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 168 :LKTIEQYND 1ro7A 109 :FKQLKDFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22063 # 1xg8A.168.24 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :L 1xg8A 16 :A T0287 170 :TIEQYND 1xg8A 18 :TSKDIYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22065 # 1gw5S.168.80 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 168 :LKTIEQYND 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22066 # 1vjuA.168.146 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 168 :LKTIEQYND 1vjuA 147 :EEDCRDFHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22067 # 1vliA.168.265 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 168 :LKTIEQYND 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22068 # 2a2mA.168.146 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 168 :LKTIEQYND 2a2mA 135 :GTDIKDYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22069 # 1wwpA.168.99 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 168 :LKTIEQYND 1wwpA 100 :FRRLPDYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22070 # 1rttA.168.59 read from T0287.t04.many.frag # found chain 1rttA in training set T0287 168 :LKTIEQYND 1rttA 60 :PPAVERFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22071 # 1auoA.168.80 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 168 :LKTIEQYND 1auoA 81 :LEELEVSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22072 # 1t77A.168.321 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 168 :LKTIEQYND 1t77A 2397 :AKTSEEFVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22073 # 1ynbA.168.112 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 168 :LKTIEQYND 1ynbA 113 :FSDVEVYVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22074 # 2exrA.168.451 read from T0287.t04.many.frag # found chain 2exrA in template set T0287 168 :LKTIEQYND 2exrA 452 :VSSVEKMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22075 # 1tr9A.168.311 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 168 :LKTIEQYND 1tr9A 311 :LERWQQASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22076 # 1uf3A.168.17 read from T0287.t04.many.frag # found chain 1uf3A in template set T0287 168 :LKTIEQYND 1uf3A 18 :LEALEKFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22077 # 1xdnA.168.77 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 168 :LKTIEQYND 1xdnA 125 :HILIDEFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22078 # 1f5qB.168.225 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 168 :LKTIEQYND 1f5qB 226 :KEELHQCCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22079 # 1e0tA.168.321 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI T0287 176 :D 1e0tA 330 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=22081 # 1eokA.168.61 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 168 :LKTIEQYND 1eokA 62 :FKSYKDLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22082 # 2cxaA.168.217 read from T0287.t04.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)K169 (2cxaA)I202 because E (beta_S) conformation "forbidden" or filtered. T0287 168 :L 2cxaA 201 :E T0287 170 :TIEQYND 2cxaA 203 :PRRDYLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22084 # 2ak3A.168.168 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 168 :LKTIEQYND 2ak3A 168 :VKRLKAYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22085 # 1xrjA.168.214 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 168 :LKTIEQYND 1xrjA 215 :LVAINLIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22086 # 1wa5C.168.79 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 168 :LKTIEQYND 1wa5C 80 :ANNVELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22087 # 1wzdA.168.165 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 168 :LKTIEQYND 1wzdA 166 :IAKLKVYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22088 # 2fb0A.168.70 read from T0287.t04.many.frag # found chain 2fb0A in template set T0287 168 :LKTIEQYND 2fb0A 68 :TAHFAQYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22089 # 1e4fT.168.166 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 168 :LKTIEQYND 1e4fT 167 :LKVYEMFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22090 # 1i60A.168.257 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 168 :LKTIEQYND 1i60A 258 :EEAIQTAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22091 # 1xqwA.168.274 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 168 :LKTIEQYND 1xqwA 275 :WEDREGYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22092 # 2bgcA.168.211 read from T0287.t04.many.frag # found chain 2bgcA in template set T0287 168 :LKTIEQYND 2bgcA 211 :LDYLKRYAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22093 # 1ifqA.169.38 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 169 :KTIEQYNDY 1ifqA 28 :RDLQQYQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22094 # 1ro7A.169.109 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 169 :KTIEQYNDY 1ro7A 110 :KQLKDFNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22095 # 1vjuA.169.147 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 169 :KTIEQYNDY 1vjuA 148 :EDCRDFHQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22096 # 1josA.169.68 read from T0287.t04.many.frag # found chain 1josA in training set T0287 169 :KTIEQYNDY 1josA 69 :KGLEKASPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22097 # 2a2mA.169.147 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 169 :KTIEQYNDY 2a2mA 136 :TDIKDYADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22098 # 1xdnA.169.78 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 169 :KTIEQYNDY 1xdnA 126 :ILIDEFTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22099 # 1wwpA.169.100 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 169 :KTIEQYNDY 1wwpA 101 :RRLPDYARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22100 # 1auoA.169.81 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 169 :KTIEQYNDY 1auoA 82 :EELEVSAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22101 # 1vliA.169.266 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 169 :KTIEQYNDY 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22102 # 1f5qB.169.226 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 169 :KTIEQYNDY 1f5qB 227 :EELHQCCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22103 # 1xqwA.169.275 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 169 :KTIEQYNDY 1xqwA 276 :EDREGYNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22104 # 1xg8A.169.25 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 169 :KTIEQYNDY 1xg8A 17 :PTSKDIYDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22105 # 1rttA.169.60 read from T0287.t04.many.frag # found chain 1rttA in training set T0287 169 :KTIEQYNDY 1rttA 61 :PAVERFREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22106 # 1gw5S.169.81 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 169 :KTIEQYNDY 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22107 # 1qwtA.169.230 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 169 :KTIEQYNDY 1qwtA 403 :LTSDQYKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22108 # 1tr9A.169.312 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 169 :KTIEQYNDY 1tr9A 312 :ERWQQASAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22109 # 1t77A.169.322 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 169 :KTIEQYNDY 1t77A 2398 :KTSEEFVHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22110 # 1uf3A.169.18 read from T0287.t04.many.frag # found chain 1uf3A in template set T0287 169 :KTIEQYNDY 1uf3A 19 :EALEKFVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22111 # 1wzdA.169.166 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 169 :KTIEQYNDY 1wzdA 167 :AKLKVYKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22112 # 2f1rA.169.146 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 169 :KTIEQYNDY 2f1rA 147 :DEVERIAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22113 # 1ynbA.169.113 read from T0287.t04.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)I171 (1ynbA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 169 :KT 1ynbA 114 :SD T0287 172 :EQYNDY 1ynbA 117 :EVYVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22115 # 2exrA.169.452 read from T0287.t04.many.frag # found chain 2exrA in template set T0287 169 :KTIEQYNDY 2exrA 453 :SSVEKMVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22116 # 1xrjA.169.215 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 169 :KTIEQYNDY 1xrjA 216 :VAINLIVQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22117 # 1lvaA.169.198 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 169 :KTIEQYNDY 1lvaA 575 :QALGEAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22118 # 1e4fT.169.167 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 169 :KTIEQYNDY 1e4fT 168 :KVYEMFYNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22119 # 1wduA.169.127 read from T0287.t04.many.frag # found chain 1wduA in template set T0287 169 :KTIEQYNDY 1wduA 131 :KPIESYLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22120 # 1eokA.169.62 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 169 :KTIEQYNDY 1eokA 63 :KSYKDLDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22121 # 1qnrA.169.138 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 169 :KTIEQYNDY 1qnrA 139 :AAQTQYRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22122 # 1z7aA.169.226 read from T0287.t04.many.frag # found chain 1z7aA in template set T0287 169 :KTIEQYNDY 1z7aA 227 :NNGEQFFQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22123 # 2cxaA.169.218 read from T0287.t04.many.frag # found chain 2cxaA in template set T0287 169 :KTIEQYNDY 2cxaA 202 :IPRRDYLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22124 # 1ifqA.170.39 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 170 :TIEQYNDYV 1ifqA 29 :DLQQYQSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22125 # 1f5qB.170.227 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 170 :TIEQYNDYV 1f5qB 228 :ELHQCCDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22126 # 1vjuA.170.148 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 170 :TIEQYNDYV 1vjuA 149 :DCRDFHQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22127 # 1ro7A.170.110 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 170 :TIEQYNDYV 1ro7A 111 :QLKDFNAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22128 # 2a2mA.170.148 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 170 :TIEQYNDYV 2a2mA 137 :DIKDYADYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22129 # 1xqwA.170.276 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 170 :TIEQYNDYV 1xqwA 277 :DREGYNKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22130 # 1wwpA.170.101 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 170 :TIEQYNDYV 1wwpA 102 :RLPDYARLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22131 # 1josA.170.69 read from T0287.t04.many.frag # found chain 1josA in training set T0287 170 :TIEQYNDYV 1josA 70 :GLEKASPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22132 # 1qwtA.170.231 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 170 :TIEQYNDYV 1qwtA 404 :TSDQYKAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22133 # 1xdnA.170.79 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 170 :TIEQYNDYV 1xdnA 127 :LIDEFTAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22134 # 1auoA.170.82 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 170 :TIEQYNDYV 1auoA 83 :ELEVSAKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22135 # 1vliA.170.267 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 170 :TIEQYNDYV 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22136 # 1wzdA.170.167 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 170 :TIEQYNDYV 1wzdA 168 :KLKVYKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22137 # 1wduA.170.128 read from T0287.t04.many.frag # found chain 1wduA in template set T0287 170 :TIEQYNDYV 1wduA 132 :PIESYLEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22138 # 1xg8A.170.26 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 170 :TIEQYNDYV 1xg8A 18 :TSKDIYDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22139 # 1tr9A.170.313 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 170 :TIEQYNDYV 1tr9A 313 :RWQQASANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22140 # 1qnrA.170.139 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 170 :TIEQYNDYV 1qnrA 140 :AQTQYRKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22141 # 1lvaA.170.199 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 170 :TIEQYNDYV 1lvaA 576 :ALGEAREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22142 # 1wdaA.170.540 read from T0287.t04.many.frag # found chain 1wdaA in template set T0287 170 :TIEQYNDYV 1wdaA 534 :TLREHNSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22143 # 1rttA.170.61 read from T0287.t04.many.frag # found chain 1rttA in training set T0287 170 :TIEQYNDYV 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22144 # 1jl1A.170.128 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 170 :TIEQYNDYV 1jl1A 129 :ENERADELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22145 # 1ynbA.170.114 read from T0287.t04.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)I171 (1ynbA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 170 :T 1ynbA 115 :D T0287 172 :EQYNDYV 1ynbA 117 :EVYVSDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22147 # 1wouA.170.44 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 170 :TIEQYNDYV 1wouA 45 :DCVQAEPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22148 # 2f1rA.170.147 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 170 :TIEQYNDYV 2f1rA 148 :EVERIAEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22149 # 1ntyA.170.294 read from T0287.t04.many.frag # found chain 1ntyA in training set T0287 170 :TIEQYNDYV 1ntyA 1519 :NKQDWIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22150 # 1tqhA.170.229 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 170 :TIEQYNDYV 1tqhA 230 :EKDQLHEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22151 # 1nznA.170.88 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 170 :TIEQYNDYV 1nznA 89 :EYEKALKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22152 # 1oltA.170.80 read from T0287.t04.many.frag # found chain 1oltA in template set T0287 170 :TIEQYNDYV 1oltA 81 :KADQYLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22153 # 1xrjA.170.216 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 170 :TIEQYNDYV 1xrjA 217 :AINLIVQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22154 # 2cxaA.170.219 read from T0287.t04.many.frag # found chain 2cxaA in template set T0287 170 :TIEQYNDYV 2cxaA 203 :PRRDYLNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22155 # 1f5qB.171.228 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 171 :IEQYNDYVR 1f5qB 229 :LHQCCDLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22156 # 1ifqA.171.40 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 171 :IEQYNDYVR 1ifqA 30 :LQQYQSQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22157 # 1vjuA.171.149 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 171 :IEQYNDYVR 1vjuA 150 :CRDFHQVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22158 # 2a2mA.171.149 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 171 :IEQYNDYVR 2a2mA 138 :IKDYADYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22159 # 1ro7A.171.111 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 171 :IEQYNDYVR 1ro7A 112 :LKDFNAYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22160 # 1xqwA.171.277 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 171 :IEQYNDYVR 1xqwA 278 :REGYNKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22161 # 1wwpA.171.102 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 171 :IEQYNDYVR 1wwpA 103 :LPDYARLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=22162 # 1qwtA.171.232 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 171 :IEQYNDYVR 1qwtA 405 :SDQYKAYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22163 # 1auoA.171.83 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 171 :IEQYNDYVR 1auoA 84 :LEVSAKMVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22164 # 1wzdA.171.168 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 171 :IEQYNDYVR 1wzdA 169 :LKVYKDEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22165 # 1xdnA.171.80 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 171 :IEQYNDYVR 1xdnA 128 :IDEFTAQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22166 # 1josA.171.70 read from T0287.t04.many.frag # found chain 1josA in training set T0287 171 :IEQYNDYVR 1josA 71 :LEKASPYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22167 # 1lvaA.171.200 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 171 :IEQYNDYVR 1lvaA 577 :LGEAREVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22168 # 1jl1A.171.129 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 171 :IEQYNDYVR 1jl1A 130 :NERADELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22169 # 1vliA.171.268 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 171 :IEQYNDYVR 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22170 # 1b3tA.171.111 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 171 :IEQYNDYVR 1b3tA 572 :AEVLKDAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22171 # 1wduA.171.129 read from T0287.t04.many.frag # found chain 1wduA in template set T0287 171 :IEQYNDYVR 1wduA 133 :IESYLEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22172 # 1nznA.171.89 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 171 :IEQYNDYVR 1nznA 90 :YEKALKYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22173 # 1xodA.171.100 read from T0287.t04.many.frag # found chain 1xodA in training set T0287 171 :IEQYNDYVR 1xodA 106 :ARAFDRGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22174 # 2f1rA.171.148 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 171 :IEQYNDYVR 2f1rA 149 :VERIAEFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22175 # 1ntyA.171.295 read from T0287.t04.many.frag # found chain 1ntyA in training set T0287 171 :IEQYNDYVR 1ntyA 1520 :KQDWIKHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22176 # 2b61A.171.362 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 171 :IEQYNDYVR 2b61A 344 :YDQFEKRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22177 # 1xrjA.171.217 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 171 :IEQYNDYVR 1xrjA 218 :INLIVQHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22178 # 1qnrA.171.140 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 171 :IEQYNDYVR 1qnrA 141 :QTQYRKYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22179 # 1oltA.171.81 read from T0287.t04.many.frag # found chain 1oltA in template set T0287 171 :IEQYNDYVR 1oltA 82 :ADQYLDALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22180 # 1wouA.171.45 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 171 :IEQYNDYVR 1wouA 46 :CVQAEPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22181 # 1ynbA.171.115 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 171 :IEQYNDYVR 1ynbA 116 :VEVYVSDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22182 # 1tqhA.171.230 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 171 :IEQYNDYVR 1tqhA 231 :KDQLHEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22183 # 1w9cA.171.301 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 171 :IEQYNDYVR 1w9cA 1008 :IPAFKEHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22184 # 1l5oA.171.209 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 171 :IEQYNDYVR 1l5oA 210 :IDNKVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22185 # 1f5qB.172.229 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 172 :EQYNDYVRD 1f5qB 230 :HQCCDLVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22186 # 1ifqA.172.41 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 172 :EQYNDYVRD 1ifqA 31 :QQYQSQAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22187 # 1xqwA.172.278 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 172 :EQYNDYVRD 1xqwA 279 :EGYNKLLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22188 # 2a2mA.172.150 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 172 :EQYNDYVRD 2a2mA 139 :KDYADYEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22189 # 1vjuA.172.150 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 172 :EQYNDYVRD 1vjuA 151 :RDFHQVAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22190 # 1qwtA.172.233 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 172 :EQYNDYVRD 1qwtA 406 :DQYKAYLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22191 # 1wzdA.172.169 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 172 :EQYNDYVRD 1wzdA 170 :KVYKDEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22192 # 1jl1A.172.130 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 172 :EQYNDYVRD 1jl1A 131 :ERADELARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22193 # 1auoA.172.84 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 172 :EQYNDYVRD 1auoA 85 :EVSAKMVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22194 # 1b3tA.172.112 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 172 :EQYNDYVRD 1b3tA 573 :EVLKDAIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22195 # 1nznA.172.90 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 172 :EQYNDYVRD 1nznA 91 :EKALKYVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22196 # 1ro7A.172.112 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 172 :EQYNDYVRD 1ro7A 113 :KDFNAYFKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22197 # 1wwpA.172.103 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 172 :EQYNDYVRD 1wwpA 104 :PDYARLMEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22198 # 1lvaA.172.201 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 172 :EQYNDYVRD 1lvaA 578 :GEAREVIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22199 # 1uddA.172.110 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 172 :EQYNDYVRD 1uddA 111 :SAYMDFMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22200 # 1xdnA.172.81 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 172 :EQYNDYVRD 1xdnA 129 :DEFTAQIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22201 # 1l5oA.172.210 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 172 :EQYNDYVRD 1l5oA 211 :DNKVDVVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22202 # 2f1rA.172.149 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 172 :EQYNDYVRD 2f1rA 150 :ERIAEFILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22203 # 1josA.172.71 read from T0287.t04.many.frag # found chain 1josA in training set T0287 172 :EQYNDYVRD 1josA 72 :EKASPYIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22204 # 1z77A.172.125 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 172 :EQYNDYVRD 1z77A 126 :RVFFDFVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22205 # 1w9cA.172.302 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 172 :EQYNDYVRD 1w9cA 1009 :PAFKEHLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22206 # 2b61A.172.363 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 172 :EQYNDYVRD 2b61A 345 :DQFEKRIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22207 # 1o6dA.172.80 read from T0287.t04.many.frag # found chain 1o6dA in training set T0287 172 :EQYNDYVRD 1o6dA 79 :EEFADFLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22208 # 1xodA.172.101 read from T0287.t04.many.frag # found chain 1xodA in training set T0287 172 :EQYNDYVRD 1xodA 107 :RAFDRGIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22209 # 1wdaA.172.542 read from T0287.t04.many.frag # found chain 1wdaA in template set T0287 172 :EQYNDYVRD 1wdaA 536 :REHNSFVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=22210 # 2gmfA.172.103 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 172 :EQYNDYVRD 2gmfA 104 :ESFKENLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22211 # 1qnrA.172.141 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 172 :EQYNDYVRD 1qnrA 142 :TQYRKYVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22212 # 1vliA.172.269 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 172 :EQYNDYVRD 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22213 # 1tqhA.172.231 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 172 :EQYNDYVRD 1tqhA 232 :DQLHEDIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22214 # 1wouA.172.46 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 172 :EQYNDYVRD 1wouA 47 :VQAEPVVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22215 # 1f5qB.173.230 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 173 :QYNDYVRDL 1f5qB 231 :QCCDLVDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22216 # 1ifqA.173.42 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 173 :QYNDYVRDL 1ifqA 32 :QYQSQAKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22217 # 1qwtA.173.234 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 173 :QYNDYVRDL 1qwtA 407 :QYKAYLQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22218 # 1xqwA.173.279 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 173 :QYNDYVRDL 1xqwA 280 :GYNKLLSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22219 # 1b3tA.173.113 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 173 :QYNDYVRDL 1b3tA 574 :VLKDAIKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22220 # 1vjuA.173.151 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 173 :QYNDYVRDL 1vjuA 152 :DFHQVAQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22221 # 1jl1A.173.131 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 173 :QYNDYVRDL 1jl1A 132 :RADELARAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22222 # 1auoA.173.85 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 173 :QYNDYVRDL 1auoA 86 :VSAKMVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22223 # 2a2mA.173.151 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 173 :QYNDYVRDL 2a2mA 140 :DYADYEAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22224 # 1wzdA.173.170 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 173 :QYNDYVRDL 1wzdA 171 :VYKDEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22225 # 1lvaA.173.202 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 173 :QYNDYVRDL 1lvaA 579 :EAREVIKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22226 # 1z77A.173.126 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 173 :QYNDYVRDL 1z77A 127 :VFFDFVREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22227 # 2b61A.173.364 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 173 :QYNDYVRDL 2b61A 346 :QFEKRIRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22228 # 1nznA.173.91 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 173 :QYNDYVRDL 1nznA 92 :KALKYVRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22229 # 2gmfA.173.104 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 173 :QYNDYVRDL 2gmfA 105 :SFKENLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22230 # 2f1rA.173.150 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 173 :QYNDYVRDL 2f1rA 151 :RIAEFILSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22231 # 1wwpA.173.104 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 173 :QYNDYVRDL 1wwpA 105 :DYARLMEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22232 # 1ro7A.173.113 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 173 :QYNDYVRDL 1ro7A 114 :DFNAYFKFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22233 # 1l5oA.173.211 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 173 :QYNDYVRDL 1l5oA 212 :NKVDVVRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22234 # 1w9cA.173.303 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 173 :QYNDYVRDL 1w9cA 1010 :AFKEHLRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22235 # 1xdnA.173.82 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 173 :QYNDYVRDL 1xdnA 130 :EFTAQIRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22236 # 1wouA.173.47 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 173 :QYNDYVRDL 1wouA 48 :QAEPVVREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22237 # 1xodA.173.102 read from T0287.t04.many.frag # found chain 1xodA in training set T0287 173 :QYNDYVRDL 1xodA 108 :AFDRGIRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22238 # 1izmA.173.155 read from T0287.t04.many.frag # found chain 1izmA in template set T0287 173 :QYNDYVRDL 1izmA 154 :EIIEYVRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22239 # 2d0tA.173.304 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 173 :QYNDY 2d0tA 302 :AHRNF T0287 180 :DL 2d0tA 309 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22241 # 1josA.173.72 read from T0287.t04.many.frag # found chain 1josA in training set T0287 173 :QYNDYVRDL 1josA 73 :KASPYIRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22242 # 1tqhA.173.232 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 173 :QYNDYVRDL 1tqhA 233 :QLHEDIYAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22243 # 1xrjA.173.219 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 173 :QYNDYVRDL 1xrjA 220 :LIVQHIQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22244 # 1jl0A.173.262 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 173 :QYNDYVRDL 1jl0A 263 :SYDDLIRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22245 # 1vliA.173.270 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 173 :QYNDYVRDL 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22246 # 1f5qB.174.231 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 174 :YNDYVRDLL 1f5qB 232 :CCDLVDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22247 # 1ifqA.174.43 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 174 :YNDYVRDLL 1ifqA 33 :YQSQAKQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22248 # 1qwtA.174.235 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 174 :YNDYVRDLL 1qwtA 408 :YKAYLQDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22249 # 1b3tA.174.114 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 174 :YNDYVRDLL 1b3tA 575 :LKDAIKDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22250 # 1jl1A.174.132 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 174 :YNDYVRDLL 1jl1A 133 :ADELARAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22251 # 1z77A.174.127 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 174 :YNDYVRDLL 1z77A 128 :FFDFVREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22252 # 1xqwA.174.280 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 174 :YNDYVRDLL 1xqwA 281 :YNKLLSDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22253 # 1nznA.174.92 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 174 :YNDYVRDLL 1nznA 93 :ALKYVRGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22254 # 1vjuA.174.152 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 174 :YNDYVRDLL 1vjuA 153 :FHQVAQDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22255 # 2b61A.174.365 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 174 :YNDYVRDLL 2b61A 347 :FEKRIRDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22256 # 2gmfA.174.105 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 174 :YNDYVRDLL 2gmfA 106 :FKENLKDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22257 # 1wzdA.174.171 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 174 :YNDYVRDLL 1wzdA 172 :YKDEYREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22258 # 1lvaA.174.203 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 174 :YNDYVRDLL 1lvaA 580 :AREVIKNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22259 # 1auoA.174.86 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 174 :YNDYVRDLL 1auoA 87 :SAKMVTDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22260 # 2f1rA.174.151 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 174 :YNDYVRDLL 2f1rA 152 :IAEFILSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22261 # 1l5oA.174.212 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 174 :YNDYVRDLL 1l5oA 213 :KVDVVRRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22262 # 1w9cA.174.304 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 174 :YNDYVRDLL 1w9cA 1011 :FKEHLRDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22263 # 1wouA.174.48 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 174 :YNDYVRDLL 1wouA 49 :AEPVVREGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22264 # 1l5aA.174.297 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 174 :YNDYVRDLL 1l5aA 298 :SGQAIRSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22265 # 2a2mA.174.152 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 174 :YNDYVRDLL 2a2mA 141 :YADYEAYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22266 # 1uddA.174.112 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 174 :YNDYVRDLL 1uddA 113 :YMDFMLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22267 # 1qw9A.174.263 read from T0287.t04.many.frag # found chain 1qw9A in training set T0287 174 :YNDYVRDLL 1qw9A 264 :MDDFIRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22268 # 2d0tA.174.305 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 174 :YNDY 2d0tA 303 :HRNF T0287 180 :DLL 2d0tA 309 :SLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22270 # 1xdnA.174.83 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 174 :YNDYVRDLL 1xdnA 131 :FTAQIRILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22271 # 1o6dA.174.82 read from T0287.t04.many.frag # found chain 1o6dA in training set T0287 174 :YNDYVRDLL 1o6dA 81 :FADFLKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22272 # 1izmA.174.156 read from T0287.t04.many.frag # found chain 1izmA in template set T0287 174 :YNDYVRDLL 1izmA 155 :IIEYVRTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22273 # 1uh4A.174.444 read from T0287.t04.many.frag # found chain 1uh4A in template set T0287 174 :YNDYVRDLL 1uh4A 445 :FDSWLRGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22274 # 1ro7A.174.114 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 174 :YNDYVRDLL 1ro7A 115 :FNAYFKFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22275 # 1x38A.174.11 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 174 :YNDYVRDLL 1x38A 12 :VEDRVADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22276 # 1jl0A.174.263 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 174 :YNDYVRDLL 1jl0A 264 :YDDLIRKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22277 # 1f5qB.175.232 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 175 :NDYVRDLLM 1f5qB 233 :CDLVDIAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22278 # 1ifqA.175.44 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 175 :NDYVRDLLM 1ifqA 34 :QSQAKQLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22279 # 1b3tA.175.115 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 175 :NDYVRDLLM 1b3tA 576 :KDAIKDLVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22280 # 1xqwA.175.281 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 175 :NDYVRDLLM 1xqwA 282 :NKLLSDFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22281 # 2gmfA.175.106 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 175 :NDYVRDLLM 2gmfA 107 :KENLKDFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22282 # 1qwtA.175.236 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 175 :NDYVRDLLM 1qwtA 409 :KAYLQDLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22283 # 1z77A.175.128 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 175 :NDYVRDLLM 1z77A 129 :FDFVREKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22284 # 1jl1A.175.133 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 175 :NDYVRDLLM 1jl1A 134 :DELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22285 # 1vjuA.175.153 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 175 :NDYVRDLLM 1vjuA 154 :HQVAQDLCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22286 # 1nznA.175.93 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 175 :NDYVRDLLM 1nznA 94 :LKYVRGLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22287 # 1wzdA.175.172 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 175 :NDYVRDLLM 1wzdA 173 :KDEYREKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22288 # 2b61A.175.366 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 175 :NDYVRDLLM 2b61A 348 :EKRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22289 # 1lvaA.175.204 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 175 :NDYVRDLLM 1lvaA 581 :REVIKNLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22290 # 1wouA.175.49 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 175 :NDYVRDLLM 1wouA 50 :EPVVREGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22291 # 1x38A.175.12 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 175 :NDYVRDLLM 1x38A 13 :EDRVADLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22292 # 1auoA.175.87 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 175 :NDYVRDLLM 1auoA 88 :AKMVTDLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22293 # 1w9cA.175.305 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 175 :NDYVRDLLM 1w9cA 1012 :KEHLRDFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22294 # 1l5aA.175.298 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 175 :NDYVRDLLM 1l5aA 299 :GQAIRSLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22295 # 1l5oA.175.213 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 175 :NDYVRDLLM 1l5oA 214 :VDVVRRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22296 # 2f1rA.175.152 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 175 :NDYVRDLLM 2f1rA 153 :AEFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22297 # 1izmA.175.157 read from T0287.t04.many.frag # found chain 1izmA in template set T0287 175 :NDYVRDLLM 1izmA 156 :IEYVRTIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22298 # 1xrjA.175.221 read from T0287.t04.many.frag # found chain 1xrjA in template set Warning: unaligning (T0287)M183 because last residue in template chain is (1xrjA)N230 T0287 175 :NDYVRDLL 1xrjA 222 :VQHIQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22299 # 1tqhA.175.234 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 175 :NDYVRDLLM 1tqhA 235 :HEDIYAFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22300 # 2d0tA.175.306 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 175 :NDY 2d0tA 304 :RNF T0287 180 :DLLM 2d0tA 309 :SLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=22302 # 1tr9A.175.318 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 175 :NDYVRDLLM 1tr9A 318 :SANMQRLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22303 # 1i60A.175.264 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 175 :NDYVRDLLM 1i60A 265 :KKTTVDVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22304 # 1uddA.175.113 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 175 :NDYVRDLLM 1uddA 114 :MDFMLATAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22305 # 1o6dA.175.83 read from T0287.t04.many.frag # found chain 1o6dA in training set T0287 175 :NDYVRDLLM 1o6dA 82 :ADFLKDLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22306 # 1llfA.175.358 read from T0287.t04.many.frag # found chain 1llfA in training set Warning: unaligning (T0287)L182 (1llfA)F366 because D (zeta) conformation "forbidden" or filtered. T0287 175 :NDYVRDL 1llfA 359 :RAYFKQS T0287 183 :M 1llfA 367 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=22308 # 1qw9A.175.264 read from T0287.t04.many.frag # found chain 1qw9A in training set T0287 175 :NDYVRDLLM 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22309 # 1ifqA.176.45 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 176 :DYVRDLLMK 1ifqA 35 :SQAKQLFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22310 # 1f5qB.176.233 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 176 :DYVRDLLMK 1f5qB 234 :DLVDIAIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22311 # 1b3tA.176.116 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 176 :DYVRDLLMK 1b3tA 577 :DAIKDLVMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22312 # 2gmfA.176.107 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 176 :DYVRDLLMK 2gmfA 108 :ENLKDFLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22313 # 1x38A.176.13 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 176 :DYVRDLLMK 1x38A 14 :DRVADLLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22314 # 1nznA.176.94 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 176 :DYVRDLLMK 1nznA 95 :KYVRGLLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22315 # 1wzdA.176.173 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 176 :DYVRDLLMK 1wzdA 174 :DEYREKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22316 # 1xqwA.176.282 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 176 :DYVRDLLMK 1xqwA 283 :KLLSDFILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22317 # 1qwtA.176.237 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 176 :DYVRDLLMK 1qwtA 410 :AYLQDLVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22318 # 1jl1A.176.134 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 176 :DYVRDLLMK 1jl1A 135 :ELARAAAMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22319 # 1z77A.176.129 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 176 :DYVRDLLMK 1z77A 130 :DFVREKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22320 # 1vjuA.176.154 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 176 :DYVRDLLMK 1vjuA 155 :QVAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22321 # 2b61A.176.367 read from T0287.t04.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 2b61A 349 :KRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22322 # 1lvaA.176.205 read from T0287.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)K184 (1lvaA)T590 because G (3-10) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 1lvaA 582 :EVIKNLAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22323 # 1wouA.176.50 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 176 :DYVRDLLMK 1wouA 51 :PVVREGLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22324 # 1tr9A.176.319 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 176 :DYVRDLLMK 1tr9A 319 :ANMQRLIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22325 # 1l5aA.176.299 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 176 :DYVRDLLMK 1l5aA 300 :QAIRSLYLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22326 # 1o6dA.176.84 read from T0287.t04.many.frag # found chain 1o6dA in training set T0287 176 :DYVRDLLMK 1o6dA 83 :DFLKDLEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22327 # 2d0tA.176.307 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 176 :DY 2d0tA 305 :NF T0287 180 :DLLMK 2d0tA 309 :SLESN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22329 # 1w9cA.176.306 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 176 :DYVRDLLMK 1w9cA 1013 :EHLRDFLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22330 # 1uddA.176.114 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 176 :DYVRDLLMK 1uddA 115 :DFMLATAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22331 # 1tqhA.176.235 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 176 :DYVRDLLMK 1tqhA 236 :EDIYAFLES Number of specific fragments extracted= 1 number of extra gaps= 0 total=22332 # 1i60A.176.265 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 176 :DYVRDLLMK 1i60A 266 :KTTVDVVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22333 # 1auoA.176.88 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 176 :DYVRDLLMK 1auoA 89 :KMVTDLIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22334 # 1l5oA.176.214 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 176 :DYVRDLLMK 1l5oA 215 :DVVRRAIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22335 # 2f1rA.176.153 read from T0287.t04.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 176 :DYVRDLLM 2f1rA 154 :EFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22336 # 1llfA.176.359 read from T0287.t04.many.frag # found chain 1llfA in training set Warning: unaligning (T0287)L182 (1llfA)F366 because D (zeta) conformation "forbidden" or filtered. T0287 176 :DYVRDL 1llfA 360 :AYFKQS T0287 183 :MK 1llfA 367 :IH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22338 # 2arhA.176.171 read from T0287.t04.many.frag # found chain 2arhA in template set T0287 176 :DYVRDLLMK 2arhA 170 :KEFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22339 # 1ursA.176.216 read from T0287.t04.many.frag # found chain 1ursA in training set T0287 176 :DYVRDLLMK 1ursA 217 :TLMRDMVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22340 # 1yjsA.176.377 read from T0287.t04.many.frag # found chain 1yjsA in template set T0287 176 :DYVRDLLMK 1yjsA 378 :AIIGLVLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22341 # 1ifqA.177.46 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 177 :YVRDLLMKF 1ifqA 36 :QAKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22342 # 1f5qB.177.234 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 177 :YVRDLLMKF 1f5qB 235 :LVDIAIVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22343 # 1b3tA.177.117 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 177 :YVRDLLMKF 1b3tA 578 :AIKDLVMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22344 # 1wzdA.177.174 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 177 :YVRDLLMKF 1wzdA 175 :EYREKLNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22345 # 2gmfA.177.108 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 177 :YVRDLLMKF 2gmfA 109 :NLKDFLLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22346 # 1xqwA.177.283 read from T0287.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)F185 (1xqwA)H292 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLMK 1xqwA 284 :LLSDFILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22347 # 1x38A.177.14 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 177 :YVRDLLMKF 1x38A 15 :RVADLLGRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22348 # 1qwtA.177.238 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 177 :YVRDLLMKF 1qwtA 411 :YLQDLVEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22349 # 1vjuA.177.155 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 177 :YVRDLLMKF 1vjuA 156 :VAQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22350 # 1z77A.177.130 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 177 :YVRDLLMKF 1z77A 131 :FVREKLKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22351 # 1jl1A.177.135 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 177 :YVRDLLMKF 1jl1A 136 :LARAAAMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22352 # 2b61A.177.368 read from T0287.t04.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because last residue in template chain is (2b61A)N358 T0287 177 :YVRDLLM 2b61A 350 :RIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22353 # 1tqhA.177.236 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 177 :YVRDLLMKF 1tqhA 237 :DIYAFLESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22354 # 1n69A.177.58 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 177 :YVRDLLMKF 1n69A 57 :IAIQMMMHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22355 # 1nznA.177.95 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 177 :YVRDLLMKF 1nznA 96 :YVRGLLQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22356 # 1lvaA.177.206 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 177 :YVRDLLMKF 1lvaA 583 :VIKNLASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22357 # 1tr9A.177.320 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 177 :YVRDLLMKF 1tr9A 320 :NMQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22358 # 1wouA.177.51 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 177 :YVRDLLMKF 1wouA 52 :VVREGLKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22359 # 2b6cA.177.192 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 177 :YVRDLLMKF 2b6cA 190 :WVEELMKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22360 # 1q7eA.177.312 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 177 :YVRDLLMKF 1q7eA 313 :EIEKYTVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22361 # 1llfA.177.360 read from T0287.t04.many.frag # found chain 1llfA in training set T0287 177 :YVRDLLMKF 1llfA 361 :YFKQSFIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22362 # 1yjsA.177.378 read from T0287.t04.many.frag # found chain 1yjsA in template set T0287 177 :YVRDLLMKF 1yjsA 379 :IIGLVLKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22363 # 2arhA.177.172 read from T0287.t04.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 T0287 177 :YVRDLLMK 2arhA 171 :EFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22364 # 1uddA.177.115 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 177 :YVRDLLMKF 1uddA 116 :FMLATAYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22365 # 1uteA.177.167 read from T0287.t04.many.frag # found chain 1uteA in training set T0287 177 :YVRDLLMKF 1uteA 168 :WIKKQLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22366 # 2d0tA.177.308 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 177 :Y 2d0tA 306 :F T0287 180 :DLLMKF 2d0tA 309 :SLESNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22368 # 1i60A.177.266 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 177 :YVRDLLMKF 1i60A 267 :TTVDVVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22369 # 1ursA.177.217 read from T0287.t04.many.frag # found chain 1ursA in training set T0287 177 :YVRDLLMKF 1ursA 218 :LMRDMVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22370 # 1colA.177.80 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 T0287 177 :YV 1colA 81 :AL T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=22372 # 2f1rA.177.154 read from T0287.t04.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 177 :YVRDLLM 2f1rA 155 :FILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22373 # 1f5qB.178.235 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 178 :VRDLLMKFD 1f5qB 236 :VDIAIVSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22374 # 1ifqA.178.47 read from T0287.t04.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1ifqA 37 :AKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22375 # 1x38A.178.15 read from T0287.t04.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)D186 (1x38A)T24 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1x38A 16 :VADLLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22376 # 1wzdA.178.175 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 178 :VRDLLMKFD 1wzdA 176 :YREKLNNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22377 # 1n69A.178.59 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 178 :VRDLLMKFD 1n69A 58 :AIQMMMHMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22378 # 1b3tA.178.118 read from T0287.t04.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)D186 (1b3tA)P587 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1b3tA 579 :IKDLVMTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22379 # 2gmfA.178.109 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 178 :VRDLLMKFD 2gmfA 110 :LKDFLLVIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22380 # 1nznA.178.96 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 178 :VRDLLMKFD 1nznA 97 :VRGLLQTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22381 # 2b6cA.178.193 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 178 :VRDLLMKFD 2b6cA 191 :VEELMKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22382 # 1qwtA.178.239 read from T0287.t04.many.frag # found chain 1qwtA in template set Warning: unaligning (T0287)K184 (1qwtA)G418 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLLM 1qwtA 412 :LQDLVE T0287 185 :FD 1qwtA 419 :MD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22384 # 1z77A.178.131 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 178 :VRDLLMKFD 1z77A 132 :VREKLKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22385 # 1jl1A.178.136 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 178 :VRDLLMKFD 1jl1A 137 :ARAAAMNPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22386 # 2d0tA.178.309 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 180 :DLLMKFD 2d0tA 309 :SLESNPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22387 # 1orc.178.6 read from T0287.t04.many.frag # found chain 1orc in training set T0287 178 :VRDLLMKFD 1orc 7 :LKDYAMRFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22388 # 1vjuA.178.156 read from T0287.t04.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)D186 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1vjuA 157 :AQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22389 # 1tr9A.178.321 read from T0287.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 178 :VRDLLMKF 1tr9A 321 :MQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22390 # 1tqhA.178.237 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 178 :VRDLLMKFD 1tqhA 238 :IYAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22391 # 1yjsA.178.379 read from T0287.t04.many.frag # found chain 1yjsA in template set T0287 178 :VRDLLMKFD 1yjsA 380 :IGLVLKNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22392 # 1colA.178.81 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 178 :V 1colA 82 :L T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=22394 # 1xqwA.178.284 read from T0287.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)D186 because last residue in template chain is (1xqwA)L293 T0287 178 :VRDLLMKF 1xqwA 285 :LSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22395 # 1uddA.178.116 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 178 :VRDLLMKFD 1uddA 117 :MLATAYKGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22396 # 2arhA.178.173 read from T0287.t04.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)M183 (2arhA)G177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 Warning: unaligning (T0287)D186 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arhA)E180 T0287 178 :VRDLL 2arhA 172 :FEEFI T0287 184 :K 2arhA 178 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=22398 # 1yvrA.178.268 read from T0287.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1yvrA 269 :WKSLLQDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22399 # 1q7eA.178.313 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 178 :VRDLLMKFD 1q7eA 314 :IEKYTVTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=22400 # 1vpjA.178.102 read from T0287.t04.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1vpjA)T91 T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22401 # 1j9lA.178.142 read from T0287.t04.many.frag # found chain 1j9lA in template set T0287 178 :VRDLLMKFD 1j9lA 143 :LIDFLKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22402 # 1bm8.178.79 read from T0287.t04.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1bm8 83 :AKQLAEKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22403 # 1fo8A.178.90 read from T0287.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)D186 (1fo8A)N203 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1fo8A 195 :LGQIFHNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22404 # 1wouA.178.52 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 178 :VRDLLMKFD 1wouA 53 :VREGLKHIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22405 # 1ursA.178.218 read from T0287.t04.many.frag # found chain 1ursA in training set T0287 178 :VRDLLMKFD 1ursA 219 :MRDMVSKYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22406 # 1n69A.179.60 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 179 :RDLLMKFDL 1n69A 59 :IQMMMHMQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22407 # 1f5qB.179.236 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 179 :RDLLMKFDL 1f5qB 237 :DIAIVSFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22408 # 2b6cA.179.194 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 179 :RDLLMKFDL 2b6cA 192 :EELMKELVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22409 # 1x38A.179.16 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 179 :RDLLMKFDL 1x38A 17 :ADLLGRMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22410 # 1orc.179.7 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1orc 8 :KDYAMRF T0287 187 :L 1orc 16 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=22412 # 1wzdA.179.176 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 179 :RDLLMKFDL 1wzdA 177 :REKLNNLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22413 # 1uddA.179.117 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 179 :RDLLMKFDL 1uddA 118 :LATAYKGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22414 # 1ifqA.179.48 read from T0287.t04.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ifqA 38 :KQLFRKL T0287 187 :L 1ifqA 46 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22416 # 1b3tA.179.119 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 179 :RDLLMKFDL 1b3tA 580 :KDLVMTKPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22417 # 1ucdA.179.105 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 179 :RDLLMKFDL 1ucdA 106 :VDMRNNYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22418 # 1colA.179.82 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :L 1colA 91 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=22420 # 1yvrA.179.269 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 179 :RDLLMKFDL 1yvrA 270 :KSLLQDMPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22421 # 1j9lA.179.143 read from T0287.t04.many.frag # found chain 1j9lA in template set T0287 179 :RDLLMKFDL 1j9lA 144 :IDFLKEFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22422 # 1bm8.179.80 read from T0287.t04.many.frag # found chain 1bm8 in training set T0287 179 :RDLLMKFDL 1bm8 84 :KQLAEKFSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22423 # 2gmfA.179.110 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 179 :RDLLMKFDL 2gmfA 111 :KDFLLVIPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22424 # 1zbxB.179.46 read from T0287.t04.many.frag # found chain 1zbxB in template set T0287 179 :RDLLMKFDL 1zbxB 526 :RAMIDQMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22425 # 1wkcA.179.10 read from T0287.t04.many.frag # found chain 1wkcA in training set T0287 179 :RDLLMKFDL 1wkcA 11 :RAAWRRLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22426 # 1ursA.179.219 read from T0287.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ursA 220 :RDMVSKY T0287 187 :L 1ursA 228 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=22428 # 1ty9A.179.132 read from T0287.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0287)D186 (1ty9A)P140 because P (beta_P) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ty9A 133 :DDAWLKR T0287 187 :L 1ty9A 141 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=22430 # 1z77A.179.132 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 179 :RDLLMKFDL 1z77A 133 :REKLKDLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22431 # 1q7eA.179.314 read from T0287.t04.many.frag # found chain 1q7eA in training set Warning: unaligning (T0287)K184 (1q7eA)T320 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLLM 1q7eA 315 :EKYTV T0287 185 :FDL 1q7eA 321 :IDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22433 # 1jl1A.179.137 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 179 :RDLLMKFDL 1jl1A 138 :RAAAMNPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22434 # 1tqhA.179.238 read from T0287.t04.many.frag # found chain 1tqhA in training set Warning: unaligning (T0287)L187 because last residue in template chain is (1tqhA)W247 T0287 179 :RDLLMKFD 1tqhA 239 :YAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22435 # 1wusA.179.110 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1wusA 186 :RLALMQ T0287 186 :DL 1wusA 193 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22437 # 1vpjA.179.103 read from T0287.t04.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22438 # 1tr9A.179.322 read from T0287.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 179 :RDLLMKF 1tr9A 322 :QRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22439 # 2d0tA.179.310 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)K184 (2d0tA)N313 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLM 2d0tA 309 :SLES T0287 185 :FDL 2d0tA 314 :PSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=22441 # 2lisA.179.89 read from T0287.t04.many.frag # found chain 2lisA in training set T0287 179 :RDLLMKFDL 2lisA 90 :AEIGRRIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22442 # 1t71A.179.141 read from T0287.t04.many.frag # found chain 1t71A in template set Warning: unaligning (T0287)F185 (1t71A)R148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L187 (1t71A)C150 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMK 1t71A 142 :KELILK T0287 186 :D 1t71A 149 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=22444 # 1yjsA.179.380 read from T0287.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)K184 (1yjsA)N386 because D (zeta) conformation "forbidden" or filtered. T0287 179 :RDLLM 1yjsA 381 :GLVLK T0287 185 :FDL 1yjsA 387 :VGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22446 # 1n69A.180.61 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)K184 (1n69A)H64 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLM 1n69A 60 :QMMM T0287 185 :FDLE 1n69A 65 :MQPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22448 # 1orc.180.8 read from T0287.t04.many.frag # found chain 1orc in training set T0287 180 :DLLMKFDLE 1orc 9 :DYAMRFGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22449 # 1ucdA.180.106 read from T0287.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0287)K184 (1ucdA)N111 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLM 1ucdA 107 :DMRN T0287 185 :FDLE 1ucdA 112 :YDII Number of specific fragments extracted= 2 number of extra gaps= 1 total=22451 # 1colA.180.83 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LE 1colA 91 :AQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=22453 # 2b6cA.180.195 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 180 :DLLMKFDLE 2b6cA 193 :ELMKELVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22454 # 1x38A.180.17 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 180 :DLLMKFDLE 1x38A 18 :DLLGRMTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22455 # 1uddA.180.118 read from T0287.t04.many.frag # found chain 1uddA in template set Warning: unaligning (T0287)D186 (1uddA)N125 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1uddA 119 :ATAYKG T0287 187 :LE 1uddA 126 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=22457 # 1f5qB.180.237 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 180 :DLLMKFDLE 1f5qB 238 :IAIVSFDEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22458 # 1q7eA.180.315 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 180 :DLLMKFDLE 1q7eA 316 :KYTVTIDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22459 # 1j9lA.180.144 read from T0287.t04.many.frag # found chain 1j9lA in template set T0287 180 :DLLMKFDLE 1j9lA 145 :DFLKEFDFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22460 # 1zbxB.180.47 read from T0287.t04.many.frag # found chain 1zbxB in template set T0287 180 :DLLMKFDLE 1zbxB 527 :AMIDQMNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22461 # 1wzdA.180.177 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 180 :DLLMKFDLE 1wzdA 178 :EKLNNLELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22462 # 1wusA.180.111 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 180 :DLLMK 1wusA 187 :LALMQ T0287 186 :DLE 1wusA 193 :KLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22464 # 1yvrA.180.270 read from T0287.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1yvrA 271 :SLLQDM T0287 187 :LE 1yvrA 278 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22466 # 1zi8A.180.85 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 180 :DLLMKFDLE 1zi8A 86 :KLWQAFDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=22467 # 1wkcA.180.11 read from T0287.t04.many.frag # found chain 1wkcA in training set T0287 180 :DLLMKFDLE 1wkcA 12 :AAWRRLDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22468 # 1ty9A.180.133 read from T0287.t04.many.frag # found chain 1ty9A in training set T0287 180 :DLLMKFDLE 1ty9A 134 :DAWLKRPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22469 # 1bm8.180.81 read from T0287.t04.many.frag # found chain 1bm8 in training set T0287 180 :DLLMKFDLE 1bm8 85 :QLAEKFSVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22470 # 1ifqA.180.49 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 180 :DLLMKFDLE 1ifqA 39 :QLFRKLNEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22471 # 1mzgA.180.94 read from T0287.t04.many.frag # found chain 1mzgA in template set Warning: unaligning (T0287)K184 (1mzgA)N99 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLM 1mzgA 95 :QDIV T0287 185 :FDLE 1mzgA 100 :FDVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22473 # 1b3tA.180.120 read from T0287.t04.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)E188 (1b3tA)P589 because C (cis) conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 1b3tA 581 :DLVMTKPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22474 # 1ursA.180.220 read from T0287.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E188 (1ursA)M229 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKF 1ursA 221 :DMVSKY T0287 187 :L 1ursA 228 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=22476 # 1j5sA.180.140 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 180 :DL 1j5sA 129 :KK T0287 184 :KFDLE 1j5sA 133 :EMTPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22478 # 2lisA.180.90 read from T0287.t04.many.frag # found chain 2lisA in training set T0287 180 :DLLMKFDLE 2lisA 91 :EIGRRIDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22479 # 1t77A.180.128 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 180 :DLLMKFDLE 1t77A 2204 :QLFKASNMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22480 # 1vpjA.180.104 read from T0287.t04.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKFD 1vpjA 93 :KILEKVE T0287 188 :E 1vpjA 101 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=22482 # 1rkxA.180.334 read from T0287.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 180 :DLLM 1rkxA 335 :NWLS T0287 185 :FDLE 1rkxA 340 :TDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22484 # 1pyaB.180.200 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 180 :DLLMKFDLE 1pyaB 283 :EIMENLTMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22485 # 1yo3A.180.39 read from T0287.t04.many.frag # found chain 1yo3A in training set T0287 180 :DLLMKFDLE 1yo3A 21 :QALQKYNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22486 # 2gmfA.180.111 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 180 :DLLMKFDLE 2gmfA 112 :DFLLVIPFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22487 # 1n69A.181.62 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 181 :LLMKFDLEK 1n69A 61 :MMMHMQPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22488 # 1ucdA.181.107 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 181 :LLMKFDLEK 1ucdA 108 :MRNNYDIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22489 # 1orc.181.9 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)F185 (1orc)F14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 181 :LLMK 1orc 10 :YAMR T0287 187 :LEK 1orc 16 :QTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22491 # 1colA.181.84 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LEK 1colA 91 :AQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22493 # 1q7eA.181.316 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 181 :LLMKFDLEK 1q7eA 317 :YTVTIDKHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22494 # 1x38A.181.18 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 181 :LLMKFDLEK 1x38A 19 :LLGRMTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22495 # 2b6cA.181.196 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 181 :LLMKFDLEK 2b6cA 194 :LMKELVLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22496 # 1wusA.181.112 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1wusA 188 :ALMQ T0287 186 :DLEK 1wusA 193 :KLSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22498 # 1zi8A.181.86 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 181 :LLMKFDLEK 1zi8A 87 :LWQAFDMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22499 # 1uddA.181.119 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 181 :LLMKFDLEK 1uddA 120 :TAYKGNIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22500 # 1mzgA.181.95 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 181 :LLMKFDLEK 1mzgA 96 :DIVNFDVRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22501 # 1j9lA.181.145 read from T0287.t04.many.frag # found chain 1j9lA in template set T0287 181 :LLMKFDLEK 1j9lA 146 :FLKEFDFSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22502 # 1yvrA.181.271 read from T0287.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1yvrA 272 :LLQDM T0287 187 :LEK 1yvrA 278 :LTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22504 # 1wkcA.181.12 read from T0287.t04.many.frag # found chain 1wkcA in training set T0287 181 :LLMKFDLEK 1wkcA 13 :AWRRLDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22505 # 1pyaB.181.201 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 181 :LLMKFDLEK 1pyaB 284 :IMENLTMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22506 # 2b8nA.181.393 read from T0287.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 2b8nA 382 :YLKN T0287 186 :DLEK 2b8nA 387 :DSYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22508 # 1zbxB.181.48 read from T0287.t04.many.frag # found chain 1zbxB in template set T0287 181 :LLMKFDLEK 1zbxB 528 :MIDQMNLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22509 # 1bm8.181.82 read from T0287.t04.many.frag # found chain 1bm8 in training set T0287 181 :LLMKFDLEK 1bm8 86 :LAEKFSVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22510 # 1fs1A.181.19 read from T0287.t04.many.frag # found chain 1fs1A in training set T0287 181 :LLMKFDLEK 1fs1A 120 :IFSCLCLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22511 # 1rz4A.181.107 read from T0287.t04.many.frag # found chain 1rz4A in template set T0287 181 :LLMKFDLEK 1rz4A 108 :LLETCHFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22512 # 2d0tA.181.312 read from T0287.t04.many.frag # found chain 2d0tA in template set T0287 181 :LLMKFDLEK 2d0tA 310 :LESNPSVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22513 # 1rkxA.181.335 read from T0287.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 181 :LLM 1rkxA 336 :WLS T0287 185 :FDLEK 1rkxA 340 :TDMHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22515 # 2c1lA.181.146 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 181 :LLMKFDLEK 2c1lA 147 :QSMGFSWND Number of specific fragments extracted= 1 number of extra gaps= 0 total=22516 # 1t77A.181.129 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 181 :LLMKFDLEK 1t77A 2205 :LFKASNMTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22517 # 1r5yA.181.363 read from T0287.t04.many.frag # found chain 1r5yA in training set T0287 181 :LLMKFDLEK 1r5yA 364 :SISEGRFSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22518 # 1j5sA.181.141 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 181 :L 1j5sA 130 :K T0287 184 :KFDLEK 1j5sA 133 :EMTPQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22520 # 1ty9A.181.134 read from T0287.t04.many.frag # found chain 1ty9A in training set T0287 181 :LLMKFDLEK 1ty9A 135 :AWLKRPYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22521 # 1wzdA.181.178 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 181 :LLMKFDLEK 1wzdA 179 :KLNNLELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22522 # 1vk9A.181.130 read from T0287.t04.many.frag # found chain 1vk9A in template set T0287 181 :LLMKFDLEK 1vk9A 119 :VLEMDDPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22523 # 1yo3A.181.40 read from T0287.t04.many.frag # found chain 1yo3A in training set T0287 181 :LLMKFDLEK 1yo3A 22 :ALQKYNVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22524 # 1n69A.182.63 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)K184 (1n69A)H64 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LM 1n69A 62 :MM T0287 185 :FDLEKY 1n69A 65 :MQPKEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22526 # 1ucdA.182.108 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 182 :LMKFDLEKY 1ucdA 109 :RNNYDIIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22527 # 1orc.182.10 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 182 :LMKF 1orc 11 :AMRF T0287 187 :LEKY 1orc 16 :QTKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22529 # 1colA.182.85 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 182 :LMK 1colA 86 :WKH T0287 187 :LEKY 1colA 91 :AQDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22531 # 1q7eA.182.317 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 182 :LMKFDLEKY 1q7eA 318 :TVTIDKHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22532 # 1wusA.182.113 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1wusA 189 :LMQ T0287 186 :DLEKY 1wusA 193 :KLSEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22534 # 1j2rA.182.117 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 182 :LMKFDLEKY 1j2rA 118 :FYGTDLELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22535 # 2c1lA.182.147 read from T0287.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 2c1lA 148 :SM T0287 185 :FDLEKY 2c1lA 151 :FSWNDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22537 # 1zi8A.182.87 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 182 :LMKFDLEKY 1zi8A 88 :WQAFDMEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22538 # 1mzgA.182.96 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 182 :LMKFDLEKY 1mzgA 97 :IVNFDVRPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22539 # 1pyaB.182.202 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 182 :LMKFDLEKY 1pyaB 285 :MENLTMPEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22540 # 1x38A.182.19 read from T0287.t04.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)D186 (1x38A)T24 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1x38A 20 :LGRM T0287 187 :LEKY 1x38A 25 :LAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22542 # 2b8nA.182.394 read from T0287.t04.many.frag # found chain 2b8nA in template set T0287 182 :LMKFDLEKY 2b8nA 383 :LKNNDSYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22543 # 1rz4A.182.108 read from T0287.t04.many.frag # found chain 1rz4A in template set T0287 182 :LMKFDLEKY 1rz4A 109 :LETCHFQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22544 # 2d0tA.182.313 read from T0287.t04.many.frag # found chain 2d0tA in template set T0287 182 :LMKFDLEKY 2d0tA 311 :ESNPSVREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22545 # 1yvrA.182.272 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 182 :LMKFDLEKY 1yvrA 273 :LQDMPLTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22546 # 1xcrA.182.75 read from T0287.t04.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)K184 (1xcrA)V77 because E (beta_S) conformation "forbidden" or filtered. T0287 182 :LM 1xcrA 75 :KK T0287 185 :FDLEKY 1xcrA 78 :YDLNKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22548 # 1rkxA.182.336 read from T0287.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 1rkxA 337 :LS T0287 185 :FDLEKY 1rkxA 340 :TDMHEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22550 # 1qouA.182.146 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 182 :LM 1qouA 146 :RD T0287 185 :FDLEKY 1qouA 149 :FNTRKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22552 # 1uddA.182.120 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 182 :LMKFDLEKY 1uddA 121 :AYKGNIIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22553 # 1wkcA.182.13 read from T0287.t04.many.frag # found chain 1wkcA in training set T0287 182 :LMKFDLEKY 1wkcA 14 :WRRLDLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22554 # 1ujpA.182.236 read from T0287.t04.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. T0287 182 :LM 1ujpA 237 :EE T0287 185 :FDLEKY 1ujpA 240 :RSLAPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22556 # 1j5sA.182.142 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 184 :KFDLEKY 1j5sA 133 :EMTPQKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22557 # 1sa3A.182.127 read from T0287.t04.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)M183 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. T0287 182 :L 1sa3A 128 :I T0287 184 :KFDLEKY 1sa3A 130 :EYDVETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22559 # 1r5yA.182.364 read from T0287.t04.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1r5yA 365 :ISE T0287 186 :DLEKY 1r5yA 369 :RFSQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22561 # 1vk9A.182.131 read from T0287.t04.many.frag # found chain 1vk9A in template set T0287 182 :LMKFDLEKY 1vk9A 120 :LEMDDPEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22562 # 1fs1A.182.20 read from T0287.t04.many.frag # found chain 1fs1A in training set Warning: unaligning (T0287)D186 (1fs1A)C125 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1fs1A 121 :FSCL T0287 187 :LEKY 1fs1A 126 :LPEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22564 # 1fs7A.182.431 read from T0287.t04.many.frag # found chain 1fs7A in training set Warning: unaligning (T0287)K184 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0287 182 :LM 1fs7A 454 :LA T0287 185 :FDLEKY 1fs7A 457 :VDMEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22566 # 2cwcA.182.178 read from T0287.t04.many.frag # found chain 2cwcA in template set Warning: unaligning (T0287)K184 (2cwcA)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (2cwcA)P183 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LM 2cwcA 179 :LR T0287 185 :F 2cwcA 182 :A T0287 187 :LEKY 2cwcA 184 :KEAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=22569 # 1j1jA.182.87 read from T0287.t04.many.frag # found chain 1j1jA in template set Warning: unaligning (T0287)F185 (1j1jA)F79 because Y (epsilon') conformation "forbidden" or filtered. T0287 182 :LMK 1j1jA 76 :KTK T0287 186 :DLEKY 1j1jA 80 :PAEQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22571 # 1n69A.183.64 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 183 :MKFDLEKYM 1n69A 63 :MHMQPKEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22572 # 1orc.183.11 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 183 :MKF 1orc 12 :MRF T0287 187 :LEKYM 1orc 16 :QTKTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22574 # 1ucdA.183.109 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 183 :MKFDLEKYM 1ucdA 110 :NNYDIIGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22575 # 1qouA.183.147 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)M183 (1qouA)D147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 185 :FDLEKYM 1qouA 149 :FNTRKFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=22576 # 1colA.183.86 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 183 :MK 1colA 87 :KH T0287 187 :LEKYM 1colA 91 :AQDMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22578 # 1oz2A.183.223 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 183 :MKFDLEKYM 1oz2A 420 :DNFCWEKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22579 # 1j2rA.183.118 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 183 :MKFDLEKYM 1j2rA 119 :YGTDLELQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22580 # 1pyaB.183.203 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 183 :MKFDLEKYM 1pyaB 286 :ENLTMPEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22581 # 2c1lA.183.148 read from T0287.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 2c1lA 149 :M T0287 185 :FDLEKYM 2c1lA 151 :FSWNDMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22583 # 1xcrA.183.76 read from T0287.t04.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 183 :MKF 1xcrA 76 :KVY T0287 187 :LEKYM 1xcrA 80 :LNKIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22585 # 1q7eA.183.318 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 183 :MKFDLEKYM 1q7eA 319 :VTIDKHEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22586 # 1wusA.183.114 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1wusA 190 :MQ T0287 186 :DLEKYM 1wusA 193 :KLSEYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22588 # 2b8nA.183.395 read from T0287.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 2b8nA 384 :KN T0287 186 :DLEKYM 2b8nA 387 :DSYNAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22590 # 2d0tA.183.314 read from T0287.t04.many.frag # found chain 2d0tA in template set T0287 183 :MKFDLEKYM 2d0tA 312 :SNPSVREFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22591 # 1mzgA.183.97 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 183 :MKFDLEKYM 1mzgA 98 :VNFDVRPWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22592 # 1sa3A.183.128 read from T0287.t04.many.frag # found chain 1sa3A in template set T0287 183 :MKFDLEKYM 1sa3A 129 :AEYDVETIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22593 # 1l3lA.183.186 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 183 :MKFDLEKYM 1l3lA 187 :VGKTMEEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22594 # 1rz4A.183.109 read from T0287.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1rz4A 110 :ET T0287 186 :DLEKYM 1rz4A 113 :HFQAFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=22596 # 1zi8A.183.88 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 183 :MKFDLEKYM 1zi8A 89 :QAFDMEAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22597 # 1l5aA.183.308 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 183 :MKFDLEKYM 1l5aA 309 :GRYRIEQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22598 # 1x38A.183.20 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 183 :MKFDLEKYM 1x38A 21 :GRMTLAEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22599 # 1ujpA.183.237 read from T0287.t04.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1ujpA 238 :E T0287 185 :FDLEKYM 1ujpA 240 :RSLAPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22601 # 1uocA.183.224 read from T0287.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 Warning: unaligning (T0287)D186 (1uocA)S228 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1uocA 227 :Y T0287 187 :LEKYM 1uocA 229 :LTTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22603 # 1rkxA.183.337 read from T0287.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 1rkxA 338 :S T0287 185 :FDLEKYM 1rkxA 340 :TDMHEYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22605 # 1r5yA.183.365 read from T0287.t04.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1r5yA 366 :SE T0287 186 :DLEKYM 1r5yA 369 :RFSQFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22607 # 1yvrA.183.273 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 183 :MKFDLEKYM 1yvrA 274 :QDMPLTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22608 # 1o2dA.183.311 read from T0287.t04.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K184 (1o2dA)G301 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 1o2dA 300 :F T0287 185 :FDLEKYM 1o2dA 302 :GSLLKFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22610 # 1oz2A.183.115 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 183 :MKFDLEKYM 1oz2A 312 :EEFSWSQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22611 # 1j5sA.183.143 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1j5sA 133 :EM T0287 187 :LEKYM 1j5sA 136 :PQKLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=22613 # 1vk4A.183.258 read from T0287.t04.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)K184 (1vk4A)K248 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1vk4A 247 :K T0287 185 :FDLEKYM 1vk4A 249 :MSIEKAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22615 # 1n69A.184.65 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 184 :KFDLEKYMK 1n69A 64 :HMQPKEICA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22616 # 1qouA.184.148 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1qouA 149 :FNTRKFTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=22617 # 1oz2A.184.224 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 421 :NFCWEKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22618 # 1orc.184.12 read from T0287.t04.many.frag # found chain 1orc in training set T0287 184 :KFDLEKYMK 1orc 13 :RFGQTKTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22619 # 1j2rA.184.119 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 184 :KFDLEKYMK 1j2rA 120 :GTDLELQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22620 # 2c1lA.184.149 read from T0287.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 2c1lA 151 :FSWNDMIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22621 # 1pyaB.184.204 read from T0287.t04.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1pyaB 287 :NL T0287 187 :LEKYMK 1pyaB 290 :MPEWLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22623 # 1xcrA.184.77 read from T0287.t04.many.frag # found chain 1xcrA in template set T0287 184 :KFDLEKYMK 1xcrA 77 :VYDLNKIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22624 # 1ucdA.184.110 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 184 :KFDLEKYMK 1ucdA 111 :NYDIIGALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22625 # 1o2dA.184.312 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 184 :KFDLEKYMK 1o2dA 301 :GGSLLKFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22626 # 1wusA.184.115 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1wusA 191 :Q T0287 186 :DLEKYMK 1wusA 193 :KLSEYMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22628 # 2d0tA.184.315 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)K184 (2d0tA)N313 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 2d0tA 314 :PSVREFVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22629 # 1colA.184.87 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 184 :K 1colA 88 :H T0287 187 :LEKYMK 1colA 91 :AQDMAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22631 # 1l5aA.184.309 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 184 :KFDLEKYMK 1l5aA 310 :RYRIEQIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22632 # 1l3lA.184.187 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 184 :KFDLEKYMK 1l3lA 188 :GKTMEEIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22633 # 1oz2A.184.116 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 313 :EFSWSQYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22634 # 2b8nA.184.396 read from T0287.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 184 :K 2b8nA 385 :N T0287 186 :DLEKYMK 2b8nA 387 :DSYNALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22636 # 1mzgA.184.98 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 184 :KFDLEKYMK 1mzgA 99 :NFDVRPWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22637 # 1f86A.184.62 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 184 :KFDLEKYMK 1f86A 72 :EIDTKSYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22638 # 1ywfA.184.269 read from T0287.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)F185 (1ywfA)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 184 :K 1ywfA 250 :Y T0287 187 :LEKYMK 1ywfA 253 :LGGYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22640 # 1j54A.184.141 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 184 :KFDLEKYMK 1j54A 142 :RNSLDALCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22641 # 1ujpA.184.238 read from T0287.t04.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)D186 (1ujpA)S241 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1ujpA 239 :GR T0287 187 :LEKYMK 1ujpA 242 :LAPLLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22643 # 1sa3A.184.129 read from T0287.t04.many.frag # found chain 1sa3A in template set T0287 184 :KFDLEKYMK 1sa3A 130 :EYDVETICT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22644 # 1uocA.184.225 read from T0287.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 T0287 185 :FDLEKYMK 1uocA 227 :YSLTTLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22645 # 1r5yA.184.366 read from T0287.t04.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1r5yA 367 :E T0287 186 :DLEKYMK 1r5yA 369 :RFSQFAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22647 # 1rz4A.184.110 read from T0287.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1rz4A 111 :T T0287 186 :DLEKYMK 1rz4A 113 :HFQAFWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22649 # 1mtyG.184.145 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 184 :KFDLEKYMK 1mtyG 149 :DTPLEELRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22650 # 1zi8A.184.89 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 184 :KFDLEKYMK 1zi8A 90 :AFDMEAGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22651 # 1j5sA.184.144 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 184 :KFDLEKYMK 1j5sA 133 :EMTPQKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22652 # 1q7eA.184.319 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 184 :KFDLEKYMK 1q7eA 320 :TIDKHEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22653 # 1oz2A.185.225 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 422 :FCWEKYLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22654 # 1qouA.185.149 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)D186 (1qouA)N150 because D (zeta) conformation "forbidden" or filtered. T0287 185 :F 1qouA 149 :F T0287 187 :LEKYMKE 1qouA 151 :TRKFTQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22656 # 1pyaB.185.205 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 185 :FDLEKYMKE 1pyaB 288 :LTMPEWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22657 # 1n69A.185.66 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 185 :FDLEKYMKE 1n69A 65 :MQPKEICAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22658 # 1j2rA.185.120 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 185 :FDLEKYMKE 1j2rA 121 :TDLELQLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22659 # 1orc.185.13 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 185 :F 1orc 14 :F T0287 187 :LEKYMKE 1orc 16 :QTKTAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22661 # 2c1lA.185.150 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 185 :FDLEKYMKE 2c1lA 151 :FSWNDMISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22662 # 1ywfA.185.270 read from T0287.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)F185 (1ywfA)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1ywfA 253 :LGGYLRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=22663 # 1o2dA.185.313 read from T0287.t04.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1o2dA 303 :SLLKFLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22664 # 1oz2A.185.117 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 314 :FSWSQYLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22665 # 1l5aA.185.310 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 185 :FDLEKYMKE 1l5aA 311 :YRIEQIEQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22666 # 1xcrA.185.78 read from T0287.t04.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 185 :F 1xcrA 78 :Y T0287 187 :LEKYMKE 1xcrA 80 :LNKIAKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22668 # 1f86A.185.63 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 185 :FDLEKYMKE 1f86A 73 :IDTKSYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22669 # 1wusA.185.116 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1wusA 193 :KLSEYMKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22670 # 1j54A.185.142 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 185 :FDLEKYMKE 1j54A 143 :NSLDALCAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22671 # 1mtyG.185.146 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 185 :FDLEKYMKE 1mtyG 150 :TPLEELRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22672 # 1uocA.185.226 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 185 :FDLEKYMKE 1uocA 227 :YSLTTLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22673 # 2d0tA.185.316 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 2d0tA 314 :P T0287 187 :LEKYMKE 2d0tA 316 :VREFVLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22675 # 1ucdA.185.111 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 185 :FDLEKYMKE 1ucdA 112 :YDIIGALRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22676 # 2c71A.185.182 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 185 :FDLEKYMKE 2c71A 658 :VTLTELFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22677 # 1l3lA.185.188 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 185 :FDLEKYMKE 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22678 # 1wkqA.185.119 read from T0287.t04.many.frag # found chain 1wkqA in training set T0287 185 :FDLEKYMKE 1wkqA 112 :FDDSFIYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22679 # 1sa3A.185.130 read from T0287.t04.many.frag # found chain 1sa3A in template set T0287 185 :FDLEKYMKE 1sa3A 131 :YDVETICTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22680 # 1ujpA.185.239 read from T0287.t04.many.frag # found chain 1ujpA in training set T0287 185 :FDLEKYMKE 1ujpA 240 :RSLAPLLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22681 # 1um0A.185.103 read from T0287.t04.many.frag # found chain 1um0A in template set T0287 185 :FDLEKYMKE 1um0A 104 :HADFTYFHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22682 # 1w5rA.185.5 read from T0287.t04.many.frag # found chain 1w5rA in template set Warning: unaligning (T0287)F185 because first residue in template chain is (1w5rA)M3 T0287 186 :DLEKYMKE 1w5rA 4 :DLGGYLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22683 # 1rz4A.185.111 read from T0287.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1rz4A 113 :HFQAFWQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22684 # 1colA.185.88 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 187 :LEKYMKE 1colA 91 :AQDMANK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22685 # 1mzgA.185.99 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 185 :FDLEKYMKE 1mzgA 100 :FDVRPWFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22686 # 1ifc.185.12 read from T0287.t04.many.frag # found chain 1ifc in training set T0287 185 :FDLEKYMKE 1ifc 12 :ENYEKFMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22687 # 1oz2A.186.226 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 423 :CWEKYLEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=22688 # 1qouA.186.150 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)D186 (1qouA)N150 because D (zeta) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1qouA 151 :TRKFTQEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=22689 # 1pyaB.186.206 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 186 :DLEKYMKEK 1pyaB 289 :TMPEWLEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22690 # 1o2dA.186.314 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 186 :DLEKYMKEK 1o2dA 303 :SLLKFLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22691 # 1j2rA.186.121 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 186 :DLEKYMKEK 1j2rA 122 :DLELQLRRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22692 # 1ywfA.186.271 read from T0287.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ywfA 253 :LGGYLRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22693 # 1orc.186.14 read from T0287.t04.many.frag # found chain 1orc in training set T0287 186 :DLEKYMKEK 1orc 15 :GQTKTAKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22694 # 1n69A.186.67 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1n69A 67 :PKEICALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22695 # 2c1lA.186.151 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 186 :DLEKYMKEK 2c1lA 152 :SWNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22696 # 1oz2A.186.118 read from T0287.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)S315 because E (beta_S) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1oz2A 316 :WSQYLRST Number of specific fragments extracted= 1 number of extra gaps= 1 total=22697 # 1xcrA.186.79 read from T0287.t04.many.frag # found chain 1xcrA in template set T0287 186 :DLEKYMKEK 1xcrA 79 :DLNKIAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22698 # 1l5aA.186.311 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 186 :DLEKYMKEK 1l5aA 312 :RIEQIEQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22699 # 1f86A.186.64 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 186 :DLEKYMKEK 1f86A 74 :DTKSYWKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22700 # 1j54A.186.143 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 186 :DLEKYMKEK 1j54A 144 :SLDALCARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22701 # 1mtyG.186.147 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 186 :DLEKYMKEK 1mtyG 151 :PLEELRKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22702 # 2d0tA.186.317 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 2d0tA 316 :VREFVLSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22703 # 2c71A.186.183 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 186 :DLEKYMKEK 2c71A 659 :TLTELFTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22704 # 1jr2A.186.170 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 186 :DLEKYMKEK 1jr2A 150 :ILPKALKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22705 # 1wusA.186.117 read from T0287.t04.many.frag # found chain 1wusA in template set T0287 186 :DLEKYMKEK 1wusA 193 :KLSEYMKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22706 # 1uocA.186.227 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 186 :DLEKYMKEK 1uocA 228 :SLTTLADEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22707 # 1jubA.186.287 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 186 :DLEKYMKEK 1jubA 288 :ELEEIMNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22708 # 1vbkA.186.245 read from T0287.t04.many.frag # found chain 1vbkA in template set T0287 186 :DLEKYMKEK 1vbkA 246 :RVLKLIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22709 # 1ucdA.186.112 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 186 :DLEKYMKEK 1ucdA 113 :DIIGALRPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22710 # 1ifc.186.13 read from T0287.t04.many.frag # found chain 1ifc in training set Warning: unaligning (T0287)D186 (1ifc)N13 because L (left) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ifc 14 :YEKFMEKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22711 # 1um0A.186.104 read from T0287.t04.many.frag # found chain 1um0A in template set T0287 186 :DLEKYMKEK 1um0A 105 :ADFTYFHKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22712 # 1mtpA.186.263 read from T0287.t04.many.frag # found chain 1mtpA in training set T0287 186 :DLEKYMKEK 1mtpA 266 :QLVEVLAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22713 # 1zsqA.186.140 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)D186 (1zsqA)D210 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K194 (1zsqA)Q218 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1zsqA 211 :PLLEYRR Number of specific fragments extracted= 1 number of extra gaps= 2 total=22714 # 1od6A.186.72 read from T0287.t04.many.frag # found chain 1od6A in training set T0287 186 :DLEKYMKEK 1od6A 73 :LLVDFVRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22715 # 2b8nA.186.398 read from T0287.t04.many.frag # found chain 2b8nA in template set T0287 186 :DLEKYMKEK 2b8nA 387 :DSYNALKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22716 # 1ko6A.186.157 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 186 :DLEKYMKEK 1ko6A 834 :RLEAVSRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22717 # 1oz2A.187.227 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 424 :WEKYLEETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22718 # 1o2dA.187.315 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 187 :LEKYMKEKG 1o2dA 304 :LLKFLKELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22719 # 1ywfA.187.272 read from T0287.t04.many.frag # found chain 1ywfA in template set T0287 187 :LEKYMKEKG 1ywfA 253 :LGGYLRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22720 # 1qouA.187.151 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K194 (1qouA)N158 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1qouA 151 :TRKFTQE T0287 195 :G 1qouA 159 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22722 # 1pyaB.187.207 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 187 :LEKYMKEKG 1pyaB 290 :MPEWLEKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22723 # 1j2rA.187.122 read from T0287.t04.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)K194 (1j2rA)R130 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1j2rA 123 :LELQLRR T0287 195 :G 1j2rA 131 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=22725 # 1l5aA.187.312 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 187 :LEKYMKEKG 1l5aA 313 :IEQIEQDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22726 # 1f86A.187.65 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 187 :LEKYMKEKG 1f86A 75 :TKSYWKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22727 # 1n69A.187.68 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 187 :LEKYMKEKG 1n69A 67 :PKEICALVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22728 # 1orc.187.15 read from T0287.t04.many.frag # found chain 1orc in training set T0287 187 :LEKYMKEKG 1orc 16 :QTKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22729 # 1j54A.187.144 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 187 :LEKYMKEKG 1j54A 145 :LDALCARYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22730 # 1mtyG.187.148 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 187 :LEKYMKEKG 1mtyG 152 :LEELRKQRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22731 # 1oz2A.187.119 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 316 :WSQYLRSTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22732 # 2c71A.187.184 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 187 :LEKYMKEKG 2c71A 660 :LTELFTLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22733 # 1jr2A.187.171 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 187 :LEKYMKEKG 1jr2A 151 :LPKALKDKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22734 # 1vbkA.187.246 read from T0287.t04.many.frag # found chain 1vbkA in template set T0287 187 :LEKYMKEKG 1vbkA 247 :VLKLIRDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22735 # 1xcrA.187.80 read from T0287.t04.many.frag # found chain 1xcrA in template set T0287 187 :LEKYMKEKG 1xcrA 80 :LNKIAKEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22736 # 1jubA.187.288 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 187 :LEKYMKEKG 1jubA 289 :LEEIMNQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22737 # 2c1lA.187.152 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 187 :LEKYMKEKG 2c1lA 153 :WNDMISEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=22738 # 1zsqA.187.141 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 T0287 187 :LEKYMKEK 1zsqA 211 :PLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=22739 # 1e5kA.187.156 read from T0287.t04.many.frag # found chain 1e5kA in training set T0287 187 :LEKYMKEKG 1e5kA 157 :VMVFMRLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22740 # 1ux5A.187.359 read from T0287.t04.many.frag # found chain 1ux5A in template set T0287 187 :LEKYMKEKG 1ux5A 1709 :FESLMHTYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22741 # 1i0dA.187.298 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 187 :LEKYMKEKG 1i0dA 332 :VIPFLREKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22742 # 1u4bA.187.514 read from T0287.t04.many.frag # found chain 1u4bA in training set Warning: unaligning (T0287)K194 (1u4bA)E818 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1u4bA 811 :LNARLKE T0287 195 :G 1u4bA 819 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=22744 # 1l3lA.187.190 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 187 :LEKYMKEKG 1l3lA 191 :MEEIADVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22745 # 1w6gA.187.115 read from T0287.t04.many.frag # found chain 1w6gA in template set T0287 187 :LEKYMKEKG 1w6gA 118 :WLKALAARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22746 # 1ko6A.187.158 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 187 :LEKYMKEKG 1ko6A 835 :LEAVSRKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22747 # 2bdeA.187.283 read from T0287.t04.many.frag # found chain 2bdeA in template set T0287 187 :LEKYMKEKG 2bdeA 284 :AKKFTEDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22748 # 1t0fC.187.32 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 187 :LEKYMKEKG 1t0fC 534 :MHERLKGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22749 # 1uocA.187.228 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 187 :LEKYMKEKG 1uocA 229 :LTTLADELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22750 # 1oz2A.188.228 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 425 :EKYLEETGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22751 # 1j2rA.188.123 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 188 :EKYMKEKGV 1j2rA 124 :ELQLRRRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22752 # 1o2dA.188.316 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 188 :EKYMKEKGV 1o2dA 305 :LKFLKELGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22753 # 1qouA.188.152 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 188 :EKYMKEKGV 1qouA 152 :RKFTQENEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22754 # 1ywfA.188.273 read from T0287.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)K194 (1ywfA)A260 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1ywfA 254 :GGYLRD T0287 195 :GV 1ywfA 261 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22756 # 1pyaB.188.208 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 188 :EKYMKEKGV 1pyaB 291 :PEWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22757 # 1l5aA.188.313 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 188 :EKYMKEKGV 1l5aA 314 :EQIEQDQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22758 # 1i0dA.188.299 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 188 :EKYMKEKGV 1i0dA 333 :IPFLREKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22759 # 1mtyG.188.149 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 188 :EKYMKEKGV 1mtyG 153 :EELRKQRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22760 # 1n69A.188.69 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 188 :EKYMKEKGV 1n69A 68 :KEICALVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22761 # 1jr2A.188.172 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 188 :EKYMKEKGV 1jr2A 152 :PKALKDKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22762 # 1jubA.188.289 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 188 :EKYMKEKGV 1jubA 290 :EEIMNQKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22763 # 1j54A.188.145 read from T0287.t04.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)K194 (1j54A)Y152 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1j54A 146 :DALCAR T0287 195 :GV 1j54A 153 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22765 # 1f86A.188.66 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 188 :EKYMKEKGV 1f86A 76 :KSYWKALGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22766 # 2nacA.188.167 read from T0287.t04.many.frag # found chain 2nacA in training set T0287 188 :EKYMKEKGV 2nacA 168 :SHEWARKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22767 # 1ko6A.188.159 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 188 :EKYMKEKGV 1ko6A 836 :EAVSRKQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22768 # 1t0fC.188.33 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 188 :EKYMKEKGV 1t0fC 535 :HERLKGKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22769 # 2c71A.188.185 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 188 :EKYMKEKGV 2c71A 661 :TELFTLKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22770 # 1orc.188.16 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 T0287 188 :EKYMKEKG 1orc 17 :TKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=22771 # 1u4bA.188.515 read from T0287.t04.many.frag # found chain 1u4bA in training set T0287 188 :EKYMKEKGV 1u4bA 812 :NARLKEERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22772 # 1vbkA.188.247 read from T0287.t04.many.frag # found chain 1vbkA in template set T0287 188 :EKYMKEKGV 1vbkA 248 :LKLIRDFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22773 # 1zsqA.188.142 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 T0287 188 :EKYMKEK 1zsqA 212 :LLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=22774 # 1e5kA.188.157 read from T0287.t04.many.frag # found chain 1e5kA in training set T0287 188 :EKYMKEKGV 1e5kA 158 :MVFMRLAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22775 # 1lxjA.188.63 read from T0287.t04.many.frag # found chain 1lxjA in training set T0287 188 :EKYMKEKGV 1lxjA 64 :HEYGHEKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22776 # 1nuuA.188.223 read from T0287.t04.many.frag # found chain 1nuuA in template set T0287 188 :EKYMKEKGV 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22777 # 1oz2A.188.120 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 317 :SQYLRSTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22778 # 1l1sA.188.72 read from T0287.t04.many.frag # found chain 1l1sA in template set T0287 188 :EKYMKEKGV 1l1sA 73 :SNTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22779 # 1l3lA.188.191 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 188 :EKYMKEKGV 1l3lA 192 :EEIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22780 # 2d1pB.188.79 read from T0287.t04.many.frag # found chain 2d1pB in template set T0287 188 :EKYMKEKGV 2d1pB 80 :AASLRERGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22781 # 1ux5A.188.360 read from T0287.t04.many.frag # found chain 1ux5A in template set T0287 188 :EKYMKEKGV 1ux5A 1710 :ESLMHTYGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22782 # 1j2rA.189.124 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 189 :KYMKEKGVQ 1j2rA 125 :LQLRRRGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=22783 # 1oz2A.189.229 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 189 :KYMKEKGVQ 1oz2A 426 :KYLEETGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22784 # 1o2dA.189.317 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 189 :KYMKEKGVQ 1o2dA 306 :KFLKELGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22785 # 1ywfA.189.274 read from T0287.t04.many.frag # found chain 1ywfA in template set T0287 189 :KYMKEKGVQ 1ywfA 255 :GYLRDAGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22786 # 1pyaB.189.209 read from T0287.t04.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)Q197 (1pyaB)K300 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1pyaB 292 :EWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=22787 # 1i0dA.189.300 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 189 :KYMKEKGVQ 1i0dA 334 :PFLREKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22788 # 1qouA.189.153 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 189 :KYMKEKGVQ 1qouA 153 :KFTQENELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22789 # 1l5aA.189.314 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 189 :KYMKEKGVQ 1l5aA 315 :QIEQDQGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22790 # 1mtyG.189.150 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 189 :KYMKEKGVQ 1mtyG 154 :ELRKQRGVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22791 # 1u4bA.189.516 read from T0287.t04.many.frag # found chain 1u4bA in training set Warning: unaligning (T0287)K194 (1u4bA)E818 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKE 1u4bA 813 :ARLKE T0287 195 :GVQ 1u4bA 819 :RLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22793 # 1t0fC.189.34 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 189 :KYMKEKGVQ 1t0fC 536 :ERLKGKGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22794 # 2nacA.189.168 read from T0287.t04.many.frag # found chain 2nacA in training set T0287 189 :KYMKEKGVQ 2nacA 169 :HEWARKGGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22795 # 1f86A.189.67 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 189 :KYMKEKGVQ 1f86A 77 :SYWKALGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22796 # 1jubA.189.290 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 189 :KYMKEKGVQ 1jubA 291 :EIMNQKGYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22797 # 1zsqA.189.143 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K194 (1zsqA)Q218 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 189 :KYMKE 1zsqA 213 :LEYRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=22798 # 1jr2A.189.173 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 189 :KYMKEKGVQ 1jr2A 153 :KALKDKGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22799 # 1j54A.189.146 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 189 :KYMKEKGVQ 1j54A 147 :ALCARYEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=22800 # 2c71A.189.186 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 189 :KYMKEKGVQ 2c71A 662 :ELFTLKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22801 # 1l1sA.189.73 read from T0287.t04.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l1sA 74 :NTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22802 # 1ko6A.189.160 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 189 :KYMKEKGVQ 1ko6A 837 :AVSRKQGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22803 # 1vbkA.189.248 read from T0287.t04.many.frag # found chain 1vbkA in template set T0287 189 :KYMKEKGVQ 1vbkA 249 :KLIRDFGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22804 # 1n69A.189.70 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)K194 (1n69A)V74 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKE 1n69A 69 :EICAL T0287 195 :GVQ 1n69A 75 :GFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=22806 # 1orc.189.17 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)K194 (1orc)L23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1orc)Y26 T0287 189 :KYMKE 1orc 18 :KTAKD T0287 195 :G 1orc 24 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=22808 # 1ux5A.189.361 read from T0287.t04.many.frag # found chain 1ux5A in template set T0287 189 :KYMKEKGVQ 1ux5A 1711 :SLMHTYGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=22809 # 1nuuA.189.224 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1nuuA 225 :TYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22810 # 2d1pB.189.80 read from T0287.t04.many.frag # found chain 2d1pB in template set T0287 189 :KYMKEKGVQ 2d1pB 81 :ASLRERGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22811 # 1e5kA.189.158 read from T0287.t04.many.frag # found chain 1e5kA in training set T0287 189 :KYMKEKGVQ 1e5kA 159 :VFMRLAGGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22812 # 1l3lA.189.192 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 189 :KYMKEKGVQ 1l3lA 193 :EIADVEGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22813 # 1c1yB.189.29 read from T0287.t04.many.frag # found chain 1c1yB in template set T0287 189 :KYMKEKGVQ 1c1yB 84 :KALKVRGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22814 # 2cvbA.189.88 read from T0287.t04.many.frag # found chain 2cvbA in template set T0287 189 :KYMKEKGVQ 2cvbA 89 :AFAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22815 # 1j2rA.190.125 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 190 :YMKEKGVQN 1j2rA 126 :QLRRRGIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22816 # 1oz2A.190.230 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 190 :YMKEKGVQN 1oz2A 427 :YLEETGASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22817 # 1jubA.190.291 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 190 :YMKEKGVQN 1jubA 292 :IMNQKGYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22818 # 1ywfA.190.275 read from T0287.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)K194 (1ywfA)A260 because G (3-10) conformation "forbidden" or filtered. T0287 190 :YMKE 1ywfA 256 :YLRD T0287 195 :GVQN 1ywfA 261 :GISQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22820 # 1i0dA.190.301 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 190 :YMKEKGVQN 1i0dA 335 :FLREKGVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22821 # 1mtyG.190.151 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 190 :YMKEKGVQN 1mtyG 155 :LRKQRGVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22822 # 1o2dA.190.318 read from T0287.t04.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)Q197 (1o2dA)Y314 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1o2dA 307 :FLKELGL T0287 198 :N 1o2dA 315 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22824 # 1pyaB.190.210 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 190 :YMKEKGVQN 1pyaB 293 :WLEKMGYKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22825 # 1vbkA.190.249 read from T0287.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1vbkA 250 :LIRDFGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22826 # 1t0fC.190.35 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 190 :YMKEKGVQN 1t0fC 537 :RLKGKGVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22827 # 2nacA.190.169 read from T0287.t04.many.frag # found chain 2nacA in training set T0287 190 :YMKEKGVQN 2nacA 170 :EWARKGGWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22828 # 1onrA.190.116 read from T0287.t04.many.frag # found chain 1onrA in template set T0287 190 :YMKEKGVQN 1onrA 118 :LYNDAGISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22829 # 1l1sA.190.74 read from T0287.t04.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1l1sA 75 :TLRASGM T0287 198 :N 1l1sA 83 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=22831 # 1zsqA.190.144 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 Warning: unaligning (T0287)N198 (1zsqA)N222 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEK 1zsqA 214 :EYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=22832 # 1qouA.190.154 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 190 :YMKEKGVQN 1qouA 154 :FTQENELGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22833 # 1ko6A.190.161 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 190 :YMKEKGVQN 1ko6A 838 :VSRKQGAQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22834 # 1l5aA.190.315 read from T0287.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)K194 (1l5aA)Q320 because G (3-10) conformation "forbidden" or filtered. T0287 190 :YMKE 1l5aA 316 :IEQD T0287 195 :GVQN 1l5aA 321 :GLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22836 # 1u4bA.190.517 read from T0287.t04.many.frag # found chain 1u4bA in training set T0287 190 :YMKEKGVQN 1u4bA 814 :RLKEERLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22837 # 2c71A.190.187 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 190 :YMKEKGVQN 2c71A 663 :LFTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22838 # 1lxjA.190.65 read from T0287.t04.many.frag # found chain 1lxjA in training set T0287 190 :YMKEKGVQN 1lxjA 66 :YGHEKGYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22839 # 2cvbA.190.89 read from T0287.t04.many.frag # found chain 2cvbA in template set Warning: unaligning (T0287)N198 (2cvbA)F98 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 2cvbA 90 :FAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22840 # 1i12A.190.142 read from T0287.t04.many.frag # found chain 1i12A in training set T0287 190 :YMKEKGVQN 1i12A 142 :FYEKCGFSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22841 # 1c1yB.190.30 read from T0287.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0287)Q197 (1c1yB)Q92 because E (beta_S) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1c1yB 85 :ALKVRGL T0287 198 :N 1c1yB 93 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=22843 # 1j54A.190.147 read from T0287.t04.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)N198 (1j54A)N156 because G (3-10) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1j54A 148 :LCARYEID Number of specific fragments extracted= 1 number of extra gaps= 1 total=22844 # 1n93X.190.364 read from T0287.t04.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1n93X 360 :IMKMIGVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=22845 # 1ux5A.190.362 read from T0287.t04.many.frag # found chain 1ux5A in template set T0287 190 :YMKEKGVQN 1ux5A 1712 :LMHTYGEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22846 # 1nuuA.190.225 read from T0287.t04.many.frag # found chain 1nuuA in template set T0287 190 :YMKEKGVQN 1nuuA 226 :YIKDHGLYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22847 # 1y42X.190.148 read from T0287.t04.many.frag # found chain 1y42X in template set T0287 190 :YMKEKGVQN 1y42X 180 :QMRARGYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22848 # 2d1pB.190.81 read from T0287.t04.many.frag # found chain 2d1pB in template set Warning: unaligning (T0287)K194 (2d1pB)R86 because G (3-10) conformation "forbidden" or filtered. T0287 190 :YMKE 2d1pB 82 :SLRE T0287 195 :GVQN 2d1pB 87 :GLDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22850 # 1f86A.190.68 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 190 :YMKEKGVQN 1f86A 78 :YWKALGISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22851 # 1mtyG.191.152 read from T0287.t04.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)N198 (1mtyG)V163 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1mtyG 156 :RKQRGVR T0287 199 :A 1mtyG 164 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=22853 # 1t0fC.191.36 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 191 :MKEKGVQNA 1t0fC 538 :LKGKGVIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22854 # 1jubA.191.292 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 191 :MKEKGVQNA 1jubA 293 :MNQKGYQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22855 # 1j2rA.191.126 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 191 :MKEKGVQNA 1j2rA 127 :LRRRGIDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22856 # 1vbkA.191.250 read from T0287.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1vbkA 251 :IRDFGVK T0287 199 :A 1vbkA 259 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=22858 # 1onrA.191.117 read from T0287.t04.many.frag # found chain 1onrA in template set T0287 191 :MKEKGVQNA 1onrA 119 :YNDAGISND Number of specific fragments extracted= 1 number of extra gaps= 0 total=22859 # 1oz2A.191.231 read from T0287.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)N198 (1oz2A)A435 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1oz2A 428 :LEETGAS T0287 199 :A 1oz2A 436 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=22861 # 1i0dA.191.302 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 191 :MKEKGVQNA 1i0dA 336 :LREKGVPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22862 # 1ko6A.191.162 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 191 :MKEKGVQNA 1ko6A 839 :SRKQGAQFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22863 # 1sp3A.191.375 read from T0287.t04.many.frag # found chain 1sp3A in template set T0287 191 :MKEKGVQNA 1sp3A 376 :MLEKGIKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22864 # 1zsqA.191.145 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 191 :MKEK 1zsqA 215 :YRRQ T0287 198 :NA 1zsqA 222 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22866 # 1l1sA.191.75 read from T0287.t04.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1l1sA 76 :LRASGM T0287 198 :NA 1l1sA 83 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22868 # 2cvbA.191.90 read from T0287.t04.many.frag # found chain 2cvbA in template set T0287 191 :MKEKGVQNA 2cvbA 91 :AEEHGIFFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22869 # 2nacA.191.170 read from T0287.t04.many.frag # found chain 2nacA in training set T0287 191 :MKEKGVQNA 2nacA 171 :WARKGGWNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22870 # 1n93X.191.365 read from T0287.t04.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1n93X 361 :MKMIGVT T0287 199 :A 1n93X 369 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=22872 # 1c1yB.191.31 read from T0287.t04.many.frag # found chain 1c1yB in template set T0287 191 :MKEKGVQNA 1c1yB 86 :LKVRGLQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22873 # 1o2dA.191.319 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 191 :MKEKGVQNA 1o2dA 308 :LKELGLYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22874 # 1i12A.191.143 read from T0287.t04.many.frag # found chain 1i12A in training set T0287 191 :MKEKGVQNA 1i12A 143 :YEKCGFSNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22875 # 1ywfA.191.276 read from T0287.t04.many.frag # found chain 1ywfA in template set T0287 191 :MKEKGVQNA 1ywfA 257 :LRDAGISQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22876 # 1lxjA.191.66 read from T0287.t04.many.frag # found chain 1lxjA in training set T0287 191 :MKEKGVQNA 1lxjA 67 :GHEKGYVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22877 # 1u4bA.191.518 read from T0287.t04.many.frag # found chain 1u4bA in training set Warning: unaligning (T0287)K194 (1u4bA)E818 because G (3-10) conformation "forbidden" or filtered. T0287 191 :MKE 1u4bA 815 :LKE T0287 195 :GVQNA 1u4bA 819 :RLQAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22879 # 1pyaB.191.211 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 191 :MKEKGVQNA 1pyaB 294 :LEKMGYKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22880 # 1jr2A.191.175 read from T0287.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)Q197 (1jr2A)A161 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1jr2A 155 :LKDKGI T0287 198 :NA 1jr2A 162 :ME Number of specific fragments extracted= 2 number of extra gaps= 1 total=22882 # 1s3rA.191.283 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)Q197 (1s3rA)N287 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1s3rA 281 :LINRGV T0287 198 :NA 1s3rA 288 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22884 # 2c71A.191.188 read from T0287.t04.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)Q197 (2c71A)P670 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A199 (2c71A)D672 because D (zeta) conformation "forbidden" or filtered. T0287 191 :MKEKGV 2c71A 664 :FTLKGV T0287 198 :N 2c71A 671 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=22886 # 1y42X.191.149 read from T0287.t04.many.frag # found chain 1y42X in template set Warning: unaligning (T0287)A199 (1y42X)D189 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 1y42X 181 :MRARGYEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22887 # 1nofA.191.119 read from T0287.t04.many.frag # found chain 1nofA in training set T0287 191 :MKEKGVQNA 1nofA 150 :MQTNGAPLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22888 # 1qddA.191.65 read from T0287.t04.many.frag # found chain 1qddA in training set Warning: unaligning (T0287)N198 (1qddA)D73 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1qddA 66 :IKESGTD T0287 199 :A 1qddA 74 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=22890 # 2igd.191.38 read from T0287.t04.many.frag # found chain 2igd in training set Warning: unaligning (T0287)Q197 (2igd)D45 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N198 (2igd)G46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)A199 (2igd)V47 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGV 2igd 39 :ANDNGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22891 # 1nuuA.191.226 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1nuuA 227 :IKDHGL T0287 198 :NA 1nuuA 234 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22893 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0287.t06.many.frag with CODEWEIGHT bystroff filtering # T0287 read from T0287.t06.many.frag # 1e9rA.1.164 read from T0287.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)M1 (1e9rA)G235 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1e9rA 236 :TPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22894 # 1wu7A.1.175 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)N3 (1wu7A)S178 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :MS 1wu7A 176 :TS T0287 4 :NMRKLF 1wu7A 179 :DPFSVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22896 # 1xsvA.1.25 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 1 :MSNNMRKLF 1xsvA 23 :LTNKQRNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22897 # 1zpyA.1.12 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 1 :MSN 1zpyA 13 :LSD T0287 6 :RKLF 1zpyA 18 :RDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22899 # 1efyA.1.3 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 1 :MSNNMRKLF 1efyA 665 :LAKPIQDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22900 # 1u61A.1.37 read from T0287.t06.many.frag # found chain 1u61A in template set T0287 1 :MSNNMRKLF 1u61A 35 :RPNQLHRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22901 # 2b06A.1.120 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N3 (2b06A)Y123 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :MS 2b06A 121 :LA T0287 4 :NMRKLF 2b06A 124 :DMLPLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22903 # 2czsA.1.12 read from T0287.t06.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S2 (2czsA)D36 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 2czsA 35 :L T0287 3 :NNMRKLF 2czsA 37 :TNHKRFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22905 # 1z7xW.1.211 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 1 :MSNNMRKLF 1z7xW 211 :TSDNCRDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22906 # 1v96A.1.17 read from T0287.t06.many.frag # found chain 1v96A in template set T0287 1 :MSNNMRKLF 1v96A 18 :HSQNMKRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22907 # 1p0yA.1.306 read from T0287.t06.many.frag # found chain 1p0yA in template set T0287 1 :MSNNMRKLF 1p0yA 351 :LPPGLLPYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22908 # 1qg8A.1.11 read from T0287.t06.many.frag # found chain 1qg8A in training set T0287 1 :MSNNMRKLF 1qg8A 13 :KSDYVAKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22909 # 1j93A.1.165 read from T0287.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M1 (1j93A)S165 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N4 (1j93A)N168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 2 :SN 1j93A 166 :SK T0287 6 :RKLF 1j93A 170 :TKIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=22911 # 2f22A.1.32 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 1 :MSNNMRKLF 2f22A 32 :ELGTLRKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22912 # 1yvrA.1.143 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 1 :MSNNMRKLF 1yvrA 144 :WGRALRKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22913 # 1ah7.1.190 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 1 :MSNNMRKLF 1ah7 191 :VNDNTKDWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22914 # 1x91A.1.29 read from T0287.t06.many.frag # found chain 1x91A in training set Warning: unaligning (T0287)N4 (1x91A)N29 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :MSN 1x91A 26 :ASA T0287 5 :MRKLF 1x91A 30 :LQALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22916 # 2b0tA.1.59 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 1 :MSNNMRKLF 2b0tA 60 :VGNALAELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22917 # 1pu6A.1.60 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 1pu6A 61 :L T0287 3 :NNMRKLF 1pu6A 63 :NDDEINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22919 # 1ua4A.1.237 read from T0287.t06.many.frag # found chain 1ua4A in template set T0287 1 :MSNNMRKLF 1ua4A 238 :TKENYKEPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22920 # 1yd0A.1.0 read from T0287.t06.many.frag # found chain 1yd0A in training set T0287 1 :MSNNMRKLF 1yd0A 1 :MKEKIRKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22921 # 1qhlA.1.166 read from T0287.t06.many.frag # found chain 1qhlA in template set T0287 1 :MSNNMRKLF 1qhlA 167 :QFNSITDYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22922 # 1jfzA.1.0 read from T0287.t06.many.frag # found chain 1jfzA in template set Warning: unaligning (T0287)N3 (1jfzA)K2 because G (3-10) conformation "forbidden" or filtered. T0287 1 :MS 1jfzA 0 :GM T0287 4 :NMRKLF 1jfzA 3 :MLEQLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22924 # 1ldjA.1.298 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 T0287 1 :MSNNMRKL 1ldjA 315 :KNEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22925 # 2bg5A.1.276 read from T0287.t06.many.frag # found chain 2bg5A in template set T0287 1 :MSNNMRKLF 2bg5A 526 :SATSIPEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22926 # 1utcA.1.329 read from T0287.t06.many.frag # found chain 1utcA in template set T0287 1 :MSNNMRKLF 1utcA 330 :EEENIIPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22927 # 1qgiA.1.181 read from T0287.t06.many.frag # found chain 1qgiA in training set T0287 1 :MSNNMRKLF 1qgiA 182 :GSDTLQGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22928 # 1fm0D.1.23 read from T0287.t06.many.frag # found chain 1fm0D in training set Warning: unaligning (T0287)M1 (1fm0D)D24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N4 (1fm0D)T27 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SN 1fm0D 25 :FP T0287 5 :MRKLF 1fm0D 28 :VEALR Number of specific fragments extracted= 2 number of extra gaps= 2 total=22930 # 2b6cA.1.120 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)L119 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLF 2b6cA 120 :TELPTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22931 # 1m5wA.1.111 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 1 :MSNNMRKLF 1m5wA 112 :QRDKMRDAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22932 # 1wu7A.2.176 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 2 :SNNMRKLFS 1wu7A 177 :SSDPFSVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22933 # 1xsvA.2.26 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 2 :SNNMRKLFS 1xsvA 24 :TNKQRNYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22934 # 1efyA.2.4 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 2 :SNNMRKLFS 1efyA 666 :AKPIQDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22935 # 1e9rA.2.165 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 2 :SNNMRKLFS 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22936 # 2czsA.2.13 read from T0287.t06.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S2 (2czsA)D36 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 2czsA 37 :TNHKRFYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=22937 # 1zpyA.2.13 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 2 :SN 1zpyA 14 :SD T0287 6 :RKLFS 1zpyA 18 :RDMHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22939 # 1ah7.2.191 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 2 :SNNMRKLFS 1ah7 192 :NDNTKDWFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22940 # 2f22A.2.33 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 2 :SNNMRKLFS 2f22A 33 :LGTLRKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22941 # 1qg8A.2.12 read from T0287.t06.many.frag # found chain 1qg8A in training set T0287 2 :SNNMRKLFS 1qg8A 14 :SDYVAKSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22942 # 2b06A.2.121 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N3 (2b06A)Y123 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :S 2b06A 122 :A T0287 5 :MRKLFS 2b06A 125 :MLPLME Number of specific fragments extracted= 2 number of extra gaps= 1 total=22944 # 1j93A.2.166 read from T0287.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 2 :SNN 1j93A 166 :SKN T0287 6 :RKLFS 1j93A 170 :TKIKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22946 # 1z7xW.2.212 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 2 :SNNMRKLFS 1z7xW 212 :SDNCRDLCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22947 # 1ldjA.2.299 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 2 :SNNMRKL 1ldjA 316 :NEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22948 # 1yvrA.2.144 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 2 :SNNMRKLFS 1yvrA 145 :GRALRKAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22949 # 1ua4A.2.238 read from T0287.t06.many.frag # found chain 1ua4A in template set T0287 2 :SNNMRKLFS 1ua4A 239 :KENYKEPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22950 # 1m5wA.2.112 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 2 :SNNMRKLFS 1m5wA 113 :RDKMRDACK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22951 # 1wb9A.2.429 read from T0287.t06.many.frag # found chain 1wb9A in template set T0287 2 :SNNMRKLFS 1wb9A 430 :NEELDEWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22952 # 1u61A.2.38 read from T0287.t06.many.frag # found chain 1u61A in template set T0287 2 :SNNMRKLFS 1u61A 36 :PNQLHRLGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22953 # 1dozA.2.17 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 2 :SNNMRKLFS 1dozA 19 :EEDIERYYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22954 # 2b6cA.2.121 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLFS 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22955 # 1v96A.2.18 read from T0287.t06.many.frag # found chain 1v96A in template set T0287 2 :SNNMRKLFS 1v96A 19 :SQNMKRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22956 # 1yd0A.2.1 read from T0287.t06.many.frag # found chain 1yd0A in training set T0287 2 :SNNMRKLFS 1yd0A 2 :KEKIRKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22957 # 1xfiA.2.38 read from T0287.t06.many.frag # found chain 1xfiA in training set Warning: unaligning (T0287)S2 (1xfiA)T39 because P (beta_P) conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 1xfiA 40 :PNEISWIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=22958 # 1pu6A.2.61 read from T0287.t06.many.frag # found chain 1pu6A in training set T0287 2 :SNNMRKLFS 1pu6A 62 :ENDDEINLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22959 # 3thiA.2.120 read from T0287.t06.many.frag # found chain 3thiA in template set T0287 2 :SNNMRKLFS 3thiA 129 :VDNIYELYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22960 # 1p0yA.2.307 read from T0287.t06.many.frag # found chain 1p0yA in template set Warning: unaligning (T0287)N3 (1p0yA)P353 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :S 1p0yA 352 :P T0287 4 :NMRKLFS 1p0yA 354 :GLLPYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22962 # 1z0wA.2.174 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SN 1z0wA 589 :VS T0287 5 :MRKLFS 1z0wA 592 :INEVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22964 # 2ahrA.2.154 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 2 :SNNMRKLFS 2ahrA 152 :EKDFDTFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22965 # 1hw1A.2.120 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 2 :SNNMRKLFS 1hw1A 121 :PDKAQEVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22966 # 2b0tA.2.60 read from T0287.t06.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)N3 (2b0tA)N62 because D (zeta) conformation "forbidden" or filtered. T0287 2 :S 2b0tA 61 :G T0287 4 :NMRKLFS 2b0tA 63 :ALAELGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22968 # 1wu7A.3.177 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 3 :NNMRKLFSM 1wu7A 178 :SDPFSVFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22969 # 1efyA.3.5 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 3 :NNMRKLFSM 1efyA 667 :KPIQDLIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22970 # 1xsvA.3.27 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 3 :NNMRKLFSM 1xsvA 25 :NKQRNYLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22971 # 1zpyA.3.14 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 3 :N 1zpyA 15 :D T0287 6 :RKLFSM 1zpyA 18 :RDMHRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22973 # 1ah7.3.192 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 3 :NNMRKLFSM 1ah7 193 :DNTKDWFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22974 # 2czsA.3.14 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 3 :NNMRKLFSM 2czsA 37 :TNHKRFYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22975 # 1e9rA.3.166 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 3 :NNMRKLFSM 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22976 # 2f22A.3.34 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 3 :NNMRKLFSM 2f22A 34 :GTLRKLFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22977 # 2b6cA.3.122 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 3 :NNMRKLFSM 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22978 # 1m5wA.3.113 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 3 :NNMRKLFSM 1m5wA 114 :DKMRDACKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22979 # 1ldjA.3.300 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 3 :NNMRKL 1ldjA 317 :EDLGRM T0287 11 :M 1ldjA 325 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=22981 # 1dozA.3.18 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 3 :NNMRKLFSM 1dozA 20 :EDIERYYTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22982 # 2b06A.3.122 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N3 (2b06A)Y123 because P (beta_P) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 2b06A 124 :DMLPLMEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22983 # 1wb9A.3.430 read from T0287.t06.many.frag # found chain 1wb9A in template set T0287 3 :NNMRKLFSM 1wb9A 431 :EELDEWRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22984 # 1z7xW.3.213 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 3 :NNMRKLFSM 1z7xW 213 :DNCRDLCGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22985 # 1j93A.3.167 read from T0287.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 3 :NN 1j93A 167 :KN T0287 6 :RKLFSM 1j93A 170 :TKIKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22987 # 1qg8A.3.13 read from T0287.t06.many.frag # found chain 1qg8A in training set T0287 3 :NNMRKLFSM 1qg8A 15 :DYVAKSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22988 # 3thiA.3.121 read from T0287.t06.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)N4 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :N 3thiA 130 :D T0287 5 :MRKLFSM 3thiA 132 :IYELYKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22990 # 1ee4A.3.296 read from T0287.t06.many.frag # found chain 1ee4A in template set Warning: unaligning (T0287)N3 (1ee4A)N383 because L (left) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 1ee4A 384 :LIPPLVKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22991 # 1yvrA.3.145 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 3 :NNMRKLFSM 1yvrA 146 :RALRKAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22992 # 1ua4A.3.239 read from T0287.t06.many.frag # found chain 1ua4A in template set T0287 3 :NNMRKLFSM 1ua4A 240 :ENYKEPFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22993 # 1xfiA.3.39 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 3 :NNMRKLFSM 1xfiA 40 :PNEISWINV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22994 # 1b25A.3.502 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 3 :NNMRKLFSM 1b25A 503 :DYYPKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22995 # 1u61A.3.39 read from T0287.t06.many.frag # found chain 1u61A in template set T0287 3 :NNMRKLFSM 1u61A 37 :NQLHRLGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22996 # 1z0wA.3.175 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :N 1z0wA 590 :S T0287 5 :MRKLFSM 1z0wA 592 :INEVLEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22998 # 1hw1A.3.121 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 3 :NNMRKLFSM 1hw1A 122 :DKAQEVLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22999 # 2ahrA.3.155 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 3 :NNMRKLFSM 2ahrA 153 :KDFDTFTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23000 # 2b0tA.3.61 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 3 :NNMRKLFSM 2b0tA 62 :NALAELGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23001 # 1yqyA.3.29 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 3 :NNMRKLFSM 1yqyA 287 :EEGRGLLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23002 # 1yavA.3.102 read from T0287.t06.many.frag # found chain 1yavA in template set T0287 3 :NNMRKLFSM 1yavA 103 :DPIMKGFGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23003 # 1wu7A.4.178 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 4 :NMRKLFSMI 1wu7A 179 :DPFSVFSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=23004 # 1ah7.4.193 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 4 :NMRKLFSMI 1ah7 194 :NTKDWFVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23005 # 1efyA.4.6 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 4 :NMRKLFSMI 1efyA 668 :PIQDLIKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23006 # 1xsvA.4.28 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 4 :NMRKLFSMI 1xsvA 26 :KQRNYLELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23007 # 1zpyA.4.15 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMI 1zpyA 18 :RDMHRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23008 # 2czsA.4.15 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 4 :NMRKLFSMI 2czsA 38 :NHKRFYDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23009 # 1m5wA.4.114 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 4 :NMRKLFSMI 1m5wA 115 :KMRDACKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23010 # 1e9rA.4.167 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 4 :NMRKLFSMI 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23011 # 1ldjA.4.301 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 4 :NMRKL 1ldjA 318 :DLGRM T0287 11 :MI 1ldjA 325 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23013 # 2b6cA.4.123 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 4 :NMRKLFSMI 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23014 # 1dozA.4.19 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 4 :NMRKLFSMI 1dozA 21 :DIERYYTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23015 # 2f22A.4.35 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 4 :NMRKLFSMI 2f22A 35 :TLRKLFIHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23016 # 2b06A.4.123 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 2b06A 125 :MLPLMEMM Number of specific fragments extracted= 1 number of extra gaps= 1 total=23017 # 1yvrA.4.146 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 4 :NMRKLFSMI 1yvrA 147 :ALRKAVSDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23018 # 1xfiA.4.40 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 4 :NMRKLFSMI 1xfiA 41 :NEISWINVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23019 # 1wb9A.4.431 read from T0287.t06.many.frag # found chain 1wb9A in template set T0287 4 :NMRKLFSMI 1wb9A 432 :ELDEWRALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23020 # 1qg8A.4.14 read from T0287.t06.many.frag # found chain 1qg8A in training set T0287 4 :NMRKLFSMI 1qg8A 16 :YVAKSISSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23021 # 1z0wA.4.176 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 4 :NMRKLFSMI 1z0wA 591 :RINEVLEHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23022 # 3thiA.4.122 read from T0287.t06.many.frag # found chain 3thiA in template set T0287 4 :NMRKLFSMI 3thiA 131 :NIYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23023 # 1yavA.4.103 read from T0287.t06.many.frag # found chain 1yavA in template set T0287 4 :NMRKLFSMI 1yavA 104 :PIMKGFGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23024 # 1hw1A.4.122 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 4 :NMRKLFSMI 1hw1A 123 :KAQEVLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23025 # 1yqyA.4.30 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 4 :NMRKLFSMI 1yqyA 288 :EGRGLLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23026 # 1ua4A.4.240 read from T0287.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0287)N4 (1ua4A)N241 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1ua4A 242 :YKEPFEIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23027 # 1v74B.4.4 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 4 :NMRKLFSMI 1v74B 5 :AMIDLAKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23028 # 1sd4A.4.10 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 4 :NMRKLFSMI 1sd4A 11 :AEWDVMNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=23029 # 1u7nA.4.191 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 4 :NMRKLFSMI 1u7nA 189 :LTKKAFELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23030 # 1z7xW.4.214 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 4 :NMRKLFSMI 1z7xW 214 :NCRDLCGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23031 # 1n1bA.4.207 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 4 :NMRKLFSMI 1n1bA 257 :EARWFIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23032 # 1b25A.4.503 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 4 :NMRKLFSMI 1b25A 504 :YYPKLLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23033 # 1j93A.4.168 read from T0287.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N4 (1j93A)N168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 1j93A 170 :TKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23034 # 1wu7A.5.179 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 5 :MRKLFSMIA 1wu7A 180 :PFSVFSIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23035 # 1ah7.5.194 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 5 :MRKLFSMIA 1ah7 195 :TKDWFVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23036 # 1efyA.5.7 read from T0287.t06.many.frag # found chain 1efyA in template set Warning: unaligning (T0287)A13 (1efyA)F677 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1efyA 669 :IQDLIKMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23037 # 1xsvA.5.29 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 5 :MRKLFSMIA 1xsvA 27 :QRNYLELFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23038 # 2czsA.5.16 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 5 :MRKLFSMIA 2czsA 39 :HKRFYDAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23039 # 1zpyA.5.16 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMIA 1zpyA 18 :RDMHRAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=23040 # 1ldjA.5.302 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 5 :MRKL 1ldjA 319 :LGRM T0287 11 :MIA 1ldjA 325 :LVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23042 # 1dozA.5.20 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 5 :MRKLFSMIA 1dozA 22 :IERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23043 # 2b6cA.5.124 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 5 :MRKLFSMIA 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23044 # 1m5wA.5.115 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 5 :MRKLFSMIA 1m5wA 116 :MRDACKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23045 # 2b06A.5.124 read from T0287.t06.many.frag # found chain 2b06A in template set T0287 5 :MRKLFSMIA 2b06A 125 :MLPLMEMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=23046 # 1wb9A.5.432 read from T0287.t06.many.frag # found chain 1wb9A in template set T0287 5 :MRKLFSMIA 1wb9A 433 :LDEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23047 # 3htsB.5.15 read from T0287.t06.many.frag # found chain 3htsB in training set T0287 5 :MRKLFSMIA 3htsB 198 :VNKLWSMVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23048 # 1e9rA.5.168 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 5 :MRKLFSMIA 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23049 # 1u7nA.5.192 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 5 :MRKLFSMIA 1u7nA 190 :TKKAFELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23050 # 1xfiA.5.41 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 5 :MRKLFSMIA 1xfiA 42 :EISWINVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23051 # 1n1bA.5.208 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 5 :MRKLFSMIA 1n1bA 258 :ARWFIDAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23052 # 1yavA.5.104 read from T0287.t06.many.frag # found chain 1yavA in template set T0287 5 :MRKLFSMIA 1yavA 105 :IMKGFGMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23053 # 3thiA.5.123 read from T0287.t06.many.frag # found chain 3thiA in template set T0287 5 :MRKLFSMIA 3thiA 132 :IYELYKKIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23054 # 1v74B.5.5 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 5 :MRKLFSMIA 1v74B 6 :MIDLAKLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23055 # 1hw1A.5.123 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 5 :MRKLFSMIA 1hw1A 124 :AQEVLATAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23056 # 1q08A.5.21 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 5 :MRKLFSMIA 1q08A 64 :IRELLSIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23057 # 1b25A.5.504 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 5 :MRKLFSMIA 1b25A 505 :YPKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23058 # 2f22A.5.36 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 5 :MRKLFSMIA 2f22A 36 :LRKLFIHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23059 # 1n5uA.5.160 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 5 :MRKLFSMIA 1n5uA 161 :YKAAFTECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23060 # 1sd4A.5.11 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 5 :MRKLFSMIA 1sd4A 12 :EWDVMNIIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23061 # 1z0wA.5.177 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 5 :MRKLFSMIA 1z0wA 592 :INEVLEHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23062 # 1yvrA.5.147 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 5 :MRKLFSMIA 1yvrA 148 :LRKAVSDWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23063 # 1z7xW.5.215 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 5 :MRKLFSMIA 1z7xW 215 :CRDLCGIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23064 # 2czlA.5.125 read from T0287.t06.many.frag # found chain 2czlA in template set Warning: unaligning (T0287)R6 (2czlA)D127 because G (3-10) conformation "forbidden" or filtered. T0287 5 :M 2czlA 126 :Y T0287 7 :KLFSMIA 2czlA 128 :RILPMVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23066 # 1wu7A.6.180 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 6 :RKLFSMIAD 1wu7A 181 :FSVFSIIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23067 # 1ah7.6.195 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 6 :RKLFSMIAD 1ah7 196 :KDWFVKAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23068 # 1efyA.6.8 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 6 :RKLFSMIAD 1efyA 670 :QDLIKMIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23069 # 1xsvA.6.30 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 6 :RKLFSMIAD 1xsvA 28 :RNYLELFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23070 # 2czsA.6.17 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 6 :RKLFSMIAD 2czsA 40 :KRFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23071 # 1dozA.6.21 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 6 :RKLFSMIAD 1dozA 23 :ERYYTHIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23072 # 1ldjA.6.303 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 6 :RKL 1ldjA 320 :GRM T0287 11 :MIAD 1ldjA 325 :LVSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23074 # 1zpyA.6.17 read from T0287.t06.many.frag # found chain 1zpyA in template set T0287 6 :RKLFSMIAD 1zpyA 18 :RDMHRAIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23075 # 2b6cA.6.125 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 6 :RKLFSMIAD 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23076 # 1m5wA.6.116 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 6 :RKLFSMIAD 1m5wA 117 :RDACKRLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23077 # 1n5uA.6.161 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 6 :RKLFSMIAD 1n5uA 162 :KAAFTECCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23078 # 1v74B.6.6 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 6 :RKLFSMIAD 1v74B 7 :IDLAKLFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23079 # 1yavA.6.105 read from T0287.t06.many.frag # found chain 1yavA in template set T0287 6 :RKLFSMIAD 1yavA 106 :MKGFGMVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23080 # 1u7nA.6.193 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 6 :RKLFSMIAD 1u7nA 191 :KKAFELLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23081 # 1n1bA.6.209 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 6 :RKLFSMIAD 1n1bA 259 :RWFIDAYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23082 # 3htsB.6.16 read from T0287.t06.many.frag # found chain 3htsB in training set T0287 6 :RKLFSMIAD 3htsB 199 :NKLWSMVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=23083 # 2b06A.6.125 read from T0287.t06.many.frag # found chain 2b06A in template set T0287 6 :RKLFSMIAD 2b06A 126 :LPLMEMMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23084 # 1wb9A.6.433 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)A13 (1wb9A)D441 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 T0287 6 :RKLFSMI 1wb9A 434 :DEWRALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23085 # 1hw1A.6.124 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1hw1A 125 :QEVLATAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=23086 # 1xfiA.6.42 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 6 :RKLFSMIAD 1xfiA 43 :ISWINVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23087 # 1skvA.6.7 read from T0287.t06.many.frag # found chain 1skvA in template set T0287 6 :RKLFSMIAD 1skvA 8 :KELFEMLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23088 # 1z0wA.6.178 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 6 :RKLFSMIAD 1z0wA 593 :NEVLEHVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23089 # 1q08A.6.22 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 6 :RKLFSMIAD 1q08A 65 :RELLSIRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23090 # 1sd4A.6.12 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 6 :RKLFSMIAD 1sd4A 13 :WDVMNIIWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23091 # 1b43A.6.247 read from T0287.t06.many.frag # found chain 1b43A in template set T0287 6 :RKLFSMIAD 1b43A 247 :KKALEIVRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23092 # 3thiA.6.124 read from T0287.t06.many.frag # found chain 3thiA in template set T0287 6 :RKLFSMIAD 3thiA 133 :YELYKKIGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23093 # 1b25A.6.505 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 6 :RKLFSMIAD 1b25A 506 :PKLLKAITG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23094 # 1yvrA.6.148 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 6 :RKLFSMIAD 1yvrA 149 :RKAVSDWYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23095 # 1f7lA.6.12 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 6 :RKLFSMIAD 1f7lA 13 :KRIASMAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23096 # 1elkA.6.37 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 6 :RKLFSMIAD 1elkA 34 :MEICDIINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23097 # 1ah7.7.196 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 7 :KLFSMIADS 1ah7 197 :DWFVKAAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23098 # 1wu7A.7.181 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 7 :KLFSMIADS 1wu7A 182 :SVFSIIDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23099 # 1efyA.7.9 read from T0287.t06.many.frag # found chain 1efyA in template set Warning: unaligning (T0287)A13 (1efyA)F677 because G (3-10) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1efyA 671 :DLIKMI T0287 14 :DS 1efyA 678 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23101 # 2czsA.7.18 read from T0287.t06.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S15 (2czsA)G49 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIAD 2czsA 41 :RFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=23102 # 1dozA.7.22 read from T0287.t06.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)A13 (1dozA)R30 because G (3-10) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1dozA 24 :RYYTHI T0287 14 :DS 1dozA 31 :RG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23104 # 1u7nA.7.194 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 7 :KLFSMIADS 1u7nA 192 :KAFELLAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23105 # 1elkA.7.38 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 7 :KLFSMIADS 1elkA 35 :EICDIINET Number of specific fragments extracted= 1 number of extra gaps= 0 total=23106 # 1hw1A.7.125 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)A13 (1hw1A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1hw1A 126 :EVLATA T0287 14 :DS 1hw1A 133 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23108 # 1n5uA.7.162 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 7 :KLFSMIADS 1n5uA 163 :AAFTECCQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23109 # 1ldjA.7.304 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 7 :KL 1ldjA 321 :RM T0287 11 :MIADS 1ldjA 325 :LVSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23111 # 1xsvA.7.31 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 7 :KLFSMIADS 1xsvA 29 :NYLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23112 # 2b06A.7.126 read from T0287.t06.many.frag # found chain 2b06A in template set T0287 7 :KLFSMIADS 2b06A 127 :PLMEMMEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23113 # 1z0wA.7.179 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. T0287 7 :KLFSM 1z0wA 594 :EVLEH T0287 13 :ADS 1z0wA 600 :LED Number of specific fragments extracted= 2 number of extra gaps= 1 total=23115 # 1q08A.7.23 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 7 :KLFSMIADS 1q08A 66 :ELLSIRIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23116 # 1b43A.7.248 read from T0287.t06.many.frag # found chain 1b43A in template set T0287 7 :KLFSMIADS 1b43A 248 :KALEIVRHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23117 # 3htsB.7.17 read from T0287.t06.many.frag # found chain 3htsB in training set T0287 7 :KLFSMIADS 3htsB 200 :KLWSMVNDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23118 # 1v74B.7.7 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 7 :KLFSMIADS 1v74B 8 :DLAKLFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23119 # 1n1bA.7.210 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 7 :KLFSMIADS 1n1bA 260 :WFIDAYARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23120 # 1qv9A.7.81 read from T0287.t06.many.frag # found chain 1qv9A in training set T0287 7 :KLFSMIADS 1qv9A 82 :KAREMLADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23121 # 1f7lA.7.13 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 7 :KLFSMIADS 1f7lA 14 :RIASMAGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23122 # 1m5wA.7.117 read from T0287.t06.many.frag # found chain 1m5wA in template set Warning: unaligning (T0287)S15 (1m5wA)A126 because G (3-10) conformation "forbidden" or filtered. T0287 7 :KLFSMIAD 1m5wA 118 :DACKRLAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23123 # 1sd4A.7.13 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 7 :KLFSMIADS 1sd4A 14 :DVMNIIWDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23124 # 3thiA.7.125 read from T0287.t06.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 7 :KLFSMI 3thiA 134 :ELYKKI T0287 14 :DS 3thiA 141 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23126 # 1zpyA.7.18 read from T0287.t06.many.frag # found chain 1zpyA in template set T0287 7 :KLFSMIADS 1zpyA 19 :DMHRAIISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23127 # 1skvA.7.8 read from T0287.t06.many.frag # found chain 1skvA in template set T0287 7 :KLFSMIADS 1skvA 9 :ELFEMLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=23128 # 2b6cA.7.126 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 7 :KLFSMIADS 2b6cA 124 :TIFALFYGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23129 # 1zv1A.7.14 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zv1A)Y22 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1zv1A 15 :KLLEKF T0287 15 :S 1zv1A 23 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=23131 # 1g8mA.7.153 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 7 :KLFSMIADS 1g8mA 154 :SVAKEMAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23132 # 1wb9A.7.434 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 7 :KLFSMIA 1wb9A 435 :EWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23133 # 1h6kA.7.496 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 7 :KLFSMIADS 1h6kA 516 :EIFSILKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23134 # 1ah7.8.197 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 8 :LFSMIADSK 1ah7 198 :WFVKAAVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23135 # 1wu7A.8.182 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 8 :LFSMIADSK 1wu7A 183 :VFSIIDRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23136 # 1elkA.8.39 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 8 :LFSMIADSK 1elkA 36 :ICDIINETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23137 # 1z0wA.8.180 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)A13 (1z0wA)L600 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMI 1z0wA 595 :VLEHV T0287 15 :SK 1z0wA 602 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23139 # 1n5uA.8.163 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 8 :LFSMIADSK 1n5uA 164 :AFTECCQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23140 # 1u7nA.8.195 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 8 :LFSMIADSK 1u7nA 193 :AFELLAADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23141 # 1dozA.8.23 read from T0287.t06.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIA 1dozA 25 :YYTHIR T0287 16 :K 1dozA 33 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=23143 # 1f7lA.8.14 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 8 :LFSMIADSK 1f7lA 15 :IASMAGRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23144 # 1xsvA.8.32 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 8 :LFSMIADSK 1xsvA 30 :YLELFYLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=23145 # 1efyA.8.10 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 8 :LFSMIADSK 1efyA 672 :LIKMIFDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23146 # 1b43A.8.249 read from T0287.t06.many.frag # found chain 1b43A in template set T0287 8 :LFSMIADSK 1b43A 249 :ALEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23147 # 1q08A.8.24 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 8 :LFSMIADSK 1q08A 67 :LLSIRIDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23148 # 2b06A.8.127 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)D14 (2b06A)A134 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIA 2b06A 128 :LMEMME T0287 15 :SK 2b06A 135 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23150 # 2czsA.8.19 read from T0287.t06.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S15 (2czsA)G49 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 2czsA 42 :FYDAFAQ T0287 16 :K 2czsA 50 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=23152 # 1ldjA.8.305 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 8 :L 1ldjA 322 :M T0287 11 :MIADSK 1ldjA 325 :LVSRIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23154 # 3htsB.8.18 read from T0287.t06.many.frag # found chain 3htsB in training set T0287 8 :LFSMIADSK 3htsB 201 :LWSMVNDKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23155 # 1t0qB.8.270 read from T0287.t06.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)K16 (1t0qB)E279 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1t0qB 271 :LVKMALEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23156 # 1qv9A.8.82 read from T0287.t06.many.frag # found chain 1qv9A in training set T0287 8 :LFSMIADSK 1qv9A 83 :AREMLADSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23157 # 1zc6A.8.169 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 8 :LFSMIADSK 1zc6A 170 :LTQMALDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23158 # 1sd4A.8.14 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 8 :LFSMIADSK 1sd4A 15 :VMNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23159 # 1v74B.8.8 read from T0287.t06.many.frag # found chain 1v74B in template set Warning: unaligning (T0287)S15 (1v74B)S16 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1v74B 9 :LAKLFLA T0287 16 :K 1v74B 17 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=23161 # 1g8mA.8.154 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 8 :LFSMIADSK 1g8mA 155 :VAKEMAASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23162 # 1hw1A.8.126 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1hw1A 127 :VLATANEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23163 # 1tn6A.8.174 read from T0287.t06.many.frag # found chain 1tn6A in training set T0287 8 :LFSMIADSK 1tn6A 175 :LVEWLRDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23164 # 1otvA.8.192 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 8 :LFSMIADSK 1otvA 193 :LAKAYCDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23165 # 1ak0.8.92 read from T0287.t06.many.frag # found chain 1ak0 in training set T0287 8 :LFSMIADSK 1ak0 93 :YTQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23166 # 1hf8A.8.44 read from T0287.t06.many.frag # found chain 1hf8A in template set T0287 8 :LFSMIADSK 1hf8A 45 :LIQCTNEMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23167 # 1zv1A.8.15 read from T0287.t06.many.frag # found chain 1zv1A in template set T0287 8 :LFSMIADSK 1zv1A 16 :LLEKFRYPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23168 # 1n1bA.8.211 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 8 :LFSMIADSK 1n1bA 261 :FIDAYARRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23169 # 1ej0A.8.79 read from T0287.t06.many.frag # found chain 1ej0A in training set T0287 8 :LFSMIADSK 1ej0A 109 :LLERVGDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23170 # 1ah7.9.198 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 9 :FSMIADSKD 1ah7 199 :FVKAAVSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23171 # 1elkA.9.40 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 9 :FSMIADSKD 1elkA 37 :CDIINETEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23172 # 1n5uA.9.164 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)D17 (1n5uA)D173 because D (zeta) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1n5uA 165 :FTECCQAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23173 # 1z0wA.9.181 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSM 1z0wA 596 :LEH T0287 13 :ADS 1z0wA 600 :LED T0287 17 :D 1z0wA 604 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=23176 # 1u7nA.9.196 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 9 :FSMIADSKD 1u7nA 194 :FELLAADET Number of specific fragments extracted= 1 number of extra gaps= 0 total=23177 # 1otvA.9.193 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 9 :FSMIADSKD 1otvA 194 :AKAYCDSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23178 # 1b43A.9.250 read from T0287.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 T0287 9 :FSMIADSK 1b43A 250 :LEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23179 # 1f7lA.9.15 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 9 :FSMIADSKD 1f7lA 16 :ASMAGRQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23180 # 1g8mA.9.155 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 9 :FSMIADSKD 1g8mA 156 :AKEMAASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23181 # 1t0qB.9.271 read from T0287.t06.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1t0qB 272 :VKMALEKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=23182 # 1q08A.9.25 read from T0287.t06.many.frag # found chain 1q08A in template set Warning: unaligning (T0287)D14 (1q08A)D73 because D (zeta) conformation "forbidden" or filtered. T0287 9 :FSMIA 1q08A 68 :LSIRI T0287 15 :SKD 1q08A 74 :PEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23184 # 1wu7A.9.183 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K16 (1wu7A)H191 because G (3-10) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1wu7A 184 :FSIIDRY T0287 17 :D 1wu7A 192 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=23186 # 1ldjA.9.306 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 11 :MIADSKD 1ldjA 325 :LVSRIQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23187 # 2czsA.9.20 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 9 :FSMIADSKD 2czsA 43 :YDAFAQGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23188 # 1zc6A.9.170 read from T0287.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIAD 1zc6A 171 :TQMALD T0287 16 :K 1zc6A 178 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=23190 # 1hw1A.9.127 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 9 :FSMIADSKD 1hw1A 128 :LATANEVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23191 # 1qkrA.9.55 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 9 :FSMIADSKD 1qkrA 934 :SRLVRGGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23192 # 1n1bA.9.212 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 9 :FSMIADSKD 1n1bA 262 :IDAYARRPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23193 # 1tn6A.9.175 read from T0287.t06.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMI 1tn6A 176 :VEWL T0287 14 :DSKD 1tn6A 181 :DPSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23195 # 1dozA.9.24 read from T0287.t06.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIA 1dozA 26 :YTHIR T0287 15 :SKD 1dozA 32 :GRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23197 # 1v58A.9.145 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 9 :FSMIADSKD 1v58A 146 :AAAILASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23198 # 1sd4A.9.15 read from T0287.t06.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)D17 (1sd4A)S24 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1sd4A 16 :MNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23199 # 1xsvA.9.33 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 9 :FSMIADSKD 1xsvA 31 :LELFYLEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23200 # 1qv9A.9.83 read from T0287.t06.many.frag # found chain 1qv9A in training set T0287 9 :FSMIADSKD 1qv9A 84 :REMLADSEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23201 # 2b06A.9.128 read from T0287.t06.many.frag # found chain 2b06A in template set T0287 9 :FSMIADSKD 2b06A 129 :MEMMEAPDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23202 # 1zv1A.9.16 read from T0287.t06.many.frag # found chain 1zv1A in template set T0287 9 :FSMIADSKD 1zv1A 17 :LEKFRYPWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23203 # 1ak0.9.93 read from T0287.t06.many.frag # found chain 1ak0 in training set T0287 9 :FSMIADSKD 1ak0 94 :TQRVSDSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23204 # 1xttA.9.14 read from T0287.t06.many.frag # found chain 1xttA in training set T0287 9 :FSMIADSKD 1xttA 15 :LTQLRDKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23205 # 1tu9A.9.12 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1tu9A 11 :YGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 1 total=23206 # 1ci4A.9.45 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1ci4A 46 :LGQFLVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23207 # 1n5uA.10.165 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 10 :SMIADSKDK 1n5uA 166 :TECCQAADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23208 # 1ah7.10.199 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 10 :SMIADSKDK 1ah7 200 :VKAAVSQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23209 # 1otvA.10.194 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 10 :SMIADSKDK 1otvA 195 :KAYCDSAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23210 # 1z0wA.10.182 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SMIADS 1z0wA 597 :EHVLED T0287 17 :DK 1z0wA 604 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23212 # 1elkA.10.41 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 10 :SMIADSKDK 1elkA 38 :DIINETEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23213 # 1v58A.10.146 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 10 :SMIADSKDK 1v58A 147 :AAILASKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23214 # 1n1bA.10.213 read from T0287.t06.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)K18 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1n1bA 263 :DAYARRPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23215 # 1qkrA.10.56 read from T0287.t06.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)D14 (1qkrA)G939 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIA 1qkrA 935 :RLVR T0287 15 :SKDK 1qkrA 940 :GSGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23217 # 1t0qB.10.272 read from T0287.t06.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)A13 (1t0qB)L276 because G (3-10) conformation "forbidden" or filtered. T0287 10 :SMI 1t0qB 273 :KMA T0287 14 :DSKDK 1t0qB 277 :EKEGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23219 # 1g8mA.10.156 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 10 :SMIADSKDK 1g8mA 157 :KEMAASKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23220 # 1hw1A.10.128 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADS 1hw1A 129 :ATANEV T0287 17 :DK 1hw1A 136 :DH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23222 # 1f7lA.10.16 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 10 :SMIADSKDK 1f7lA 17 :SMAGRQKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23223 # 1ci4A.10.46 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1ci4A 47 :GQFLVLK T0287 18 :K 1ci4A 55 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=23225 # 1zc6A.10.171 read from T0287.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1zc6A)S180 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIAD 1zc6A 172 :QMALD T0287 16 :K 1zc6A 178 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=23227 # 1zv1A.10.17 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1zv1A)L26 because G (3-10) conformation "forbidden" or filtered. T0287 10 :SMI 1zv1A 18 :EKF T0287 14 :DSKD 1zv1A 22 :YPWE Number of specific fragments extracted= 2 number of extra gaps= 2 total=23229 # 1q08A.10.26 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 10 :SMIADSKDK 1q08A 69 :SIRIDPEHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23230 # 1u7nA.10.197 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 10 :SMIADSKDK 1u7nA 195 :ELLAADETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23231 # 1b43A.10.251 read from T0287.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1b43A)P259 T0287 10 :SMIADSK 1b43A 251 :EIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23232 # 1ldjA.10.307 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 11 :MIADSKDK 1ldjA 325 :LVSRIQDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23233 # 1tu9A.10.13 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 10 :SMIADSKDK 1tu9A 12 :GRCCASTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23234 # 1wb9A.10.437 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)A13 (1wb9A)D441 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 10 :SMI 1wb9A 438 :ALA T0287 16 :KDK 1wb9A 444 :TDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23236 # 1zybA.10.193 read from T0287.t06.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 10 :SMI 1zybA 182 :RCL T0287 14 :DSKDK 1zybA 186 :DTRLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23238 # 1ak0.10.94 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)A13 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. T0287 10 :SMI 1ak0 95 :QRV T0287 14 :DSKDK 1ak0 99 :DSSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23240 # 1aa7A.10.11 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SMIA 1aa7A 12 :LSII T0287 15 :S 1aa7A 17 :S T0287 17 :DK 1aa7A 19 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23243 # 1qv9A.10.84 read from T0287.t06.many.frag # found chain 1qv9A in training set Warning: unaligning (T0287)D17 (1qv9A)Y92 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1qv9A 85 :EMLADSE T0287 18 :K 1qv9A 93 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=23245 # 2bnlA.10.8 read from T0287.t06.many.frag # found chain 2bnlA in template set T0287 10 :SMIADSKDK 2bnlA 9 :QFIAENQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23246 # 1tn6A.10.176 read from T0287.t06.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. T0287 10 :SMI 1tn6A 177 :EWL T0287 14 :DSKDK 1tn6A 181 :DPSQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23248 # 1i4dA.10.52 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 10 :SMIADSKDK 1i4dA 74 :DLSQKSPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23249 # 1xttA.10.15 read from T0287.t06.many.frag # found chain 1xttA in training set T0287 10 :SMIADSKDK 1xttA 16 :TQLRDKYTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23250 # 1v74B.10.10 read from T0287.t06.many.frag # found chain 1v74B in template set Warning: unaligning (T0287)D17 (1v74B)I18 because E (beta_S) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1v74B 11 :KLFLASK T0287 18 :K 1v74B 19 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=23252 # 1n5uA.11.166 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 11 :MIADSKDKK 1n5uA 167 :ECCQAADKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23253 # 1otvA.11.195 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 11 :MIADSKDKK 1otvA 196 :AYCDSAEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23254 # 1qkrA.11.57 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 11 :MIADSKDKK 1qkrA 936 :LVRGGSGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23255 # 1z0wA.11.183 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :M 1z0wA 598 :H T0287 13 :ADS 1z0wA 600 :LED T0287 17 :DKK 1z0wA 604 :KKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23258 # 1ah7.11.200 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 11 :MIADSKDKK 1ah7 201 :KAAVSQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23259 # 1v58A.11.147 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 11 :MIADSKDKK 1v58A 148 :AILASKDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23260 # 1n1bA.11.214 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 11 :MIADSKDKK 1n1bA 264 :AYARRPDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23261 # 1elkA.11.42 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 11 :MIADSKDKK 1elkA 39 :IINETEEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23262 # 1ci4A.11.47 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADSKD 1ci4A 48 :QFLVLKK T0287 19 :K 1ci4A 56 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=23264 # 1zv1A.11.18 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 11 :MI 1zv1A 19 :KF T0287 14 :DSKDKK 1zv1A 22 :YPWELM Number of specific fragments extracted= 2 number of extra gaps= 1 total=23266 # 1aa7A.11.12 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)I12 (1aa7A)I14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :M 1aa7A 13 :S T0287 13 :ADS 1aa7A 15 :IPS T0287 17 :DKK 1aa7A 19 :PLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23269 # 1t0qB.11.273 read from T0287.t06.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADSK 1t0qB 274 :MALEKE T0287 18 :KK 1t0qB 281 :NR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23271 # 1ak0.11.95 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 T0287 11 :MIADSKDK 1ak0 96 :RVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23272 # 1zc6A.11.172 read from T0287.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIAD 1zc6A 173 :MALD T0287 16 :KDKK 1zc6A 178 :RHSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23274 # 1hw1A.11.129 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K18 (1hw1A)H137 because E (beta_S) conformation "forbidden" or filtered. T0287 11 :MIADSKD 1hw1A 130 :TANEVAD T0287 19 :K 1hw1A 138 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=23276 # 1g8mA.11.157 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 11 :MIADSKDKK 1g8mA 158 :EMAASKDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23277 # 2bl2A.11.42 read from T0287.t06.many.frag # found chain 2bl2A in template set T0287 11 :MIADSKDKK 2bl2A 43 :ALTTSQPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23278 # 1kxu.11.137 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 11 :MIADSKDKK 1kxu 128 :NLRESPLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23279 # 1zybA.11.194 read from T0287.t06.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 11 :MI 1zybA 183 :CL T0287 14 :DSKDKK 1zybA 186 :DTRLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23281 # 1tu9A.11.14 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADSK 1tu9A 13 :RCCAST T0287 18 :KK 1tu9A 20 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23283 # 1i4dA.11.53 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 11 :MIADSKDKK 1i4dA 75 :LSQKSPELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23284 # 1wb9A.11.438 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 11 :MIA 1wb9A 439 :LAD T0287 16 :KDKK 1wb9A 444 :TDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23286 # 1on2A.11.30 read from T0287.t06.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)A13 (1on2A)A33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1on2A)V34 because E (beta_S) conformation "forbidden" or filtered. T0287 11 :MI 1on2A 31 :AL T0287 15 :SKDKK 1on2A 35 :HPSSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23288 # 1f7lA.11.17 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 11 :MIADSKDKK 1f7lA 18 :MAGRQKRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23289 # 1jfbA.11.156 read from T0287.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MI 1jfbA 156 :LL T0287 14 :DSKDKK 1jfbA 159 :VPFNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23291 # 1ez3A.11.36 read from T0287.t06.many.frag # found chain 1ez3A in template set T0287 11 :MIADSKDKK 1ez3A 60 :AILASPNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23292 # 1rzhM.11.236 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 11 :MIADSKDKK 1rzhM 237 :QIADRGTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23293 # 1xttA.11.16 read from T0287.t06.many.frag # found chain 1xttA in training set Warning: unaligning (T0287)D17 (1xttA)T23 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADSK 1xttA 17 :QLRDKY T0287 18 :KK 1xttA 24 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23295 # 1q08A.11.27 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 11 :MIADSKDKK 1q08A 70 :IRIDPEHHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23296 # 1oksA.11.12 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 11 :MIADSKDKK 1oksA 13 :SSRLEEDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23297 # 1n5uA.12.167 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 12 :IADSKDKKE 1n5uA 168 :CCQAADKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23298 # 1otvA.12.196 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 12 :IADSKDKKE 1otvA 197 :YCDSAEKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23299 # 1qkrA.12.58 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 12 :IADSKDKKE 1qkrA 937 :VRGGSGNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23300 # 1z0wA.12.184 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADS 1z0wA 599 :VLED T0287 17 :DKKE 1z0wA 604 :KKKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23302 # 1aa7A.12.13 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADS 1aa7A 14 :IIPS T0287 17 :DKKE 1aa7A 19 :PLKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23304 # 1ah7.12.201 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 12 :IADSKDKKE 1ah7 202 :AAVSQEYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23305 # 1v58A.12.148 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 12 :IADSKDKKE 1v58A 149 :ILASKDPAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23306 # 1zv1A.12.19 read from T0287.t06.many.frag # found chain 1zv1A in template set T0287 12 :IADSKDKKE 1zv1A 20 :FRYPWELMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23307 # 1n1bA.12.215 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 12 :IADSKDKKE 1n1bA 265 :YARRPDMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23308 # 1elkA.12.43 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 12 :IADSKDKKE 1elkA 40 :INETEEGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23309 # 1ci4A.12.48 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 12 :IADSKDKKE 1ci4A 49 :FLVLKKDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=23310 # 1hw1A.12.130 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IA 1hw1A 131 :AN T0287 15 :SKDKKE 1hw1A 134 :VADHAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23312 # 1kxu.12.138 read from T0287.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IA 1kxu 129 :LR T0287 15 :SKDKKE 1kxu 132 :SPLGQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23314 # 1t0qB.12.274 read from T0287.t06.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)K16 (1t0qB)E279 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IADS 1t0qB 275 :ALEK T0287 17 :DKKE 1t0qB 280 :GNRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23316 # 1ak0.12.96 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 12 :IADSKDK 1ak0 97 :VSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23317 # 1on2A.12.31 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 12 :IADSKDKKE 1on2A 32 :LAVHPSSVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23318 # 1rzhM.12.237 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 12 :IADSKDKKE 1rzhM 238 :IADRGTAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23319 # 1i4dA.12.54 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 12 :IADSKDKKE 1i4dA 76 :SQKSPELQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23320 # 2bl2A.12.43 read from T0287.t06.many.frag # found chain 2bl2A in template set T0287 12 :IADSKDKKE 2bl2A 44 :LTTSQPEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23321 # 1wb9A.12.439 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 12 :IA 1wb9A 440 :AD T0287 16 :KDKKE 1wb9A 444 :TDYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23323 # 1jfbA.12.157 read from T0287.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :I 1jfbA 157 :L T0287 14 :DSKDKKE 1jfbA 159 :VPFNDLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23325 # 1m0wA.12.3 read from T0287.t06.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKE 1m0wA 7 :SKDQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23326 # 1oksA.12.13 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 12 :IADSKDKKE 1oksA 14 :SRLEEDRKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23327 # 1tu9A.12.15 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IADSK 1tu9A 14 :CCAST T0287 18 :KKE 1tu9A 20 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23329 # 1zybA.12.195 read from T0287.t06.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1zybA 184 :L T0287 14 :DSKDKKE 1zybA 186 :DTRLNIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23331 # 1lvaA.12.26 read from T0287.t06.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)D14 (1lvaA)L405 because E (beta_S) conformation "forbidden" or filtered. T0287 12 :IA 1lvaA 403 :AS T0287 15 :SKDKKE 1lvaA 406 :SLEETR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23333 # 1ymtA.12.18 read from T0287.t06.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)D14 (1ymtA)E237 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IA 1ymtA 235 :EP T0287 15 :SKDKKE 1ymtA 238 :EDQVRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23335 # 1q52A.12.266 read from T0287.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)I12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q52A)L267 Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 13 :ADS 1q52A 268 :LDD T0287 17 :DKKE 1q52A 272 :LVGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=23337 # 1zc6A.12.173 read from T0287.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)E20 (1zc6A)S182 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADSKDKK 1zc6A 174 :ALDGRHSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=23338 # 1r6xA.12.11 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 12 :IADSKDKKE 1r6xA 13 :IARDALKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23339 # 1qkrA.13.59 read from T0287.t06.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)K18 (1qkrA)N943 because G (3-10) conformation "forbidden" or filtered. T0287 13 :ADSKD 1qkrA 938 :RGGSG T0287 19 :KEK 1qkrA 944 :KRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23341 # 1n5uA.13.168 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)D17 (1n5uA)D173 because D (zeta) conformation "forbidden" or filtered. T0287 13 :ADSK 1n5uA 169 :CQAA T0287 18 :KKEK 1n5uA 174 :KAAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=23343 # 1otvA.13.197 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 13 :ADSKDKKEK 1otvA 198 :CDSAEKQNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23344 # 1aa7A.13.14 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :ADS 1aa7A 15 :IPS T0287 17 :DKKEK 1aa7A 19 :PLKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23346 # 1z0wA.13.185 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :ADS 1z0wA 600 :LED T0287 17 :DKKEK 1z0wA 604 :KKKNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23348 # 1zv1A.13.20 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1zv1A 22 :YPWELMPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23349 # 1on2A.13.32 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 13 :ADSKDKKEK 1on2A 33 :AVHPSSVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23350 # 1ah7.13.202 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 13 :ADSKDKKEK 1ah7 203 :AVSQEYADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23351 # 1ci4A.13.49 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 13 :ADSK 1ci4A 50 :LVLK T0287 18 :KKEK 1ci4A 55 :DEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23353 # 1lvaA.13.27 read from T0287.t06.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1lvaA)L405 because E (beta_S) conformation "forbidden" or filtered. T0287 15 :SKDKKEK 1lvaA 406 :SLEETRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23354 # 1kxu.13.139 read from T0287.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1kxu 130 :R T0287 15 :SKDKKEK 1kxu 132 :SPLGQEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23356 # 1n1bA.13.216 read from T0287.t06.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)K19 (1n1bA)N272 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :ADSKDK 1n1bA 266 :ARRPDM T0287 20 :EK 1n1bA 273 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23358 # 1m0wA.13.4 read from T0287.t06.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEK 1m0wA 7 :SKDQLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23359 # 1oksA.13.14 read from T0287.t06.many.frag # found chain 1oksA in training set Warning: unaligning (T0287)D14 (1oksA)L16 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :A 1oksA 15 :R T0287 15 :SKDKKEK 1oksA 17 :EEDRKRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23361 # 1hw1A.13.131 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :A 1hw1A 132 :N T0287 15 :S 1hw1A 134 :V T0287 17 :DKKEK 1hw1A 136 :DHADA Number of specific fragments extracted= 3 number of extra gaps= 2 total=23364 # 1v58A.13.149 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 13 :ADSKDKKEK 1v58A 150 :LASKDPAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23365 # 1elkA.13.44 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 13 :ADSKDKKEK 1elkA 41 :NETEEGPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23366 # 1rzhM.13.238 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 13 :ADSKDKKEK 1rzhM 239 :ADRGTAAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=23367 # 1q52A.13.267 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 13 :ADSKDKKEK 1q52A 268 :LDDGLVGQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23368 # 1t0qB.13.275 read from T0287.t06.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 13 :ADSK 1t0qB 276 :LEKE T0287 18 :KKEK 1t0qB 281 :NREV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23370 # 1ymtA.13.19 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 13 :ADSKDKKEK 1ymtA 236 :PEEDQVRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23371 # 1ak0.13.97 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K18 (1ak0)S103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 13 :ADSKD 1ak0 98 :SDSSL T0287 21 :K 1ak0 106 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=23373 # 1jfbA.13.158 read from T0287.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)D14 (1jfbA)V159 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :A 1jfbA 158 :G T0287 15 :SKDKKEK 1jfbA 160 :PFNDLEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23375 # 1i4dA.13.55 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 13 :ADSKDKKEK 1i4dA 77 :QKSPELQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23376 # 1r6xA.13.12 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 13 :ADSKDKKEK 1r6xA 14 :ARDALKKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23377 # 2ayuA.13.86 read from T0287.t06.many.frag # found chain 2ayuA in template set Warning: unaligning (T0287)A13 (2ayuA)G87 because G (3-10) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 2ayuA 88 :LPKNVKEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23378 # 1yrtA.13.208 read from T0287.t06.many.frag # found chain 1yrtA in template set T0287 13 :ADSKDKKEK 1yrtA 209 :VTSGDSVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23379 # 1szhA.13.17 read from T0287.t06.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)D14 (1szhA)C33 because E (beta_S) conformation "forbidden" or filtered. T0287 13 :A 1szhA 32 :C T0287 15 :SKDKKEK 1szhA 34 :TRNRQEC Number of specific fragments extracted= 2 number of extra gaps= 1 total=23381 # 1wb9A.13.440 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 13 :A 1wb9A 441 :D T0287 16 :KDKKEK 1wb9A 444 :TDYLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=23383 # 2bl2A.13.44 read from T0287.t06.many.frag # found chain 2bl2A in template set Warning: unaligning (T0287)K16 (2bl2A)Q48 because D (zeta) conformation "forbidden" or filtered. T0287 13 :ADS 2bl2A 45 :TTS T0287 17 :DKKEK 2bl2A 49 :PEKFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23385 # 1qkrA.14.60 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 14 :DSKDKKEKL 1qkrA 939 :GGSGNKRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23386 # 1n5uA.14.169 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 14 :DSKDKKEKL 1n5uA 170 :QAADKAACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23387 # 1aa7A.14.15 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 14 :DSKDKKEKL 1aa7A 16 :PSGPLKAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23388 # 1otvA.14.198 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 14 :DSKDKKEKL 1otvA 199 :DSAEKQNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23389 # 1on2A.14.33 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 14 :DSKDKKEKL 1on2A 34 :VHPSSVTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23390 # 1z0wA.14.186 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 14 :DS 1z0wA 601 :ED T0287 17 :DKKEKL 1z0wA 604 :KKKNRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23392 # 1lvaA.14.28 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 14 :DSKDKKEKL 1lvaA 405 :LSLEETRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23393 # 1kxu.14.140 read from T0287.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1kxu 132 :SPLGQEKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23394 # 1hw1A.14.132 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DS 1hw1A 133 :EV T0287 17 :DKKEKL 1hw1A 136 :DHADAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23396 # 1rzhM.14.239 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 14 :DSKDKKEKL 1rzhM 240 :DRGTAAERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23397 # 1ci4A.14.50 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DS 1ci4A 51 :VL T0287 19 :KEKL 1ci4A 56 :EDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23399 # 1zv1A.14.21 read from T0287.t06.many.frag # found chain 1zv1A in template set T0287 14 :DSKDKKEKL 1zv1A 22 :YPWELMPLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23400 # 1szhA.14.18 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 14 :DSKDKKEKL 1szhA 33 :CTRNRQECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23401 # 1m0wA.14.5 read from T0287.t06.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEKL 1m0wA 7 :SKDQLNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23402 # 1r6xA.14.13 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 14 :DSKDKKEKL 1r6xA 15 :RDALKKNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23403 # 1yovA.14.237 read from T0287.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1yovA)T236 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKL 1yovA 237 :YKEKEDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23404 # 1ah7.14.203 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 14 :DSKDKKEKL 1ah7 204 :VSQEYADKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23405 # 1ymtA.14.20 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 14 :DSKDKKEKL 1ymtA 237 :EEDQVRARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23406 # 1q52A.14.268 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 14 :DSKDKKEKL 1q52A 269 :DDGLVGQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23407 # 1oksA.14.15 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 14 :DSKDKKEKL 1oksA 16 :LEEDRKRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23408 # 1gxjA.14.40 read from T0287.t06.many.frag # found chain 1gxjA in template set Warning: unaligning (T0287)D14 (1gxjA)E525 because E (beta_S) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1gxjA 526 :VDEKYSLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23409 # 1yiiA.14.28 read from T0287.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)D17 (1yiiA)T33 because E (beta_S) conformation "forbidden" or filtered. T0287 14 :DSK 1yiiA 30 :GMG T0287 18 :KKEKL 1yiiA 34 :DEETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23411 # 1xdpA.14.66 read from T0287.t06.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)D14 (1xdpA)G68 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1xdpA 69 :SNSHSRHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23412 # 1g2yA.14.17 read from T0287.t06.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. T0287 14 :DS 1g2yA 18 :ES T0287 17 :DKKEKL 1g2yA 21 :LSKEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23414 # 1n1bA.14.217 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 14 :DSKDKKEKL 1n1bA 267 :RRPDMNPLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23415 # 1jfbA.14.159 read from T0287.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)D14 (1jfbA)V159 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1jfbA 160 :PFNDLEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23416 # 1elkA.14.45 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 14 :DSKDKKEKL 1elkA 42 :ETEEGPKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23417 # 1yrtA.14.209 read from T0287.t06.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1yrtA 211 :SGDSVTDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=23418 # 1i4dA.14.56 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 14 :DSKDKKEKL 1i4dA 78 :KSPELQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23419 # 2ayuA.14.87 read from T0287.t06.many.frag # found chain 2ayuA in template set T0287 14 :DSKDKKEKL 2ayuA 88 :LPKNVKEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23420 # 1qkrA.15.61 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 15 :SKDKKEKLI 1qkrA 940 :GSGNKRALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23421 # 1aa7A.15.16 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKLI 1aa7A 19 :PLKAEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23423 # 1szhA.15.19 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 15 :SKDKKEKLI 1szhA 34 :TRNRQECCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23424 # 1on2A.15.34 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 15 :SKDKKEKLI 1on2A 35 :HPSSVTKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23425 # 1z0wA.15.187 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1z0wA 602 :D T0287 17 :DKKEKLI 1z0wA 604 :KKKNRLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=23427 # 1otvA.15.199 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 15 :SKDKKEKLI 1otvA 200 :SAEKQNRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=23428 # 1r6xA.15.14 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 15 :SKDKKEKLI 1r6xA 16 :DALKKNELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23429 # 1w8iA.15.55 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 15 :SKDKKEKLI 1w8iA 56 :KKLPADKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23430 # 1g2yA.15.18 read from T0287.t06.many.frag # found chain 1g2yA in training set T0287 15 :SKDKKEKLI 1g2yA 19 :SGLSKEALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23431 # 1lvaA.15.29 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 15 :SKDKKEKLI 1lvaA 406 :SLEETRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23432 # 1rzhM.15.240 read from T0287.t06.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)S15 (1rzhM)R241 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1rzhM 242 :GTAAERAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23433 # 1kxu.15.141 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 15 :SKDKKEKLI 1kxu 132 :SPLGQEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23434 # 1n5uA.15.170 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 15 :SKDKKEKLI 1n5uA 171 :AADKAACLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23435 # 1yiiA.15.29 read from T0287.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)K16 (1yiiA)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :S 1yiiA 31 :M T0287 17 :DKKEKLI 1yiiA 33 :TDEETIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23437 # 1hw1A.15.133 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 15 :SKDKKEKLI 1hw1A 134 :VADHADAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23438 # 1ci4A.15.51 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 15 :SKDKKEKLI 1ci4A 52 :LKKDEDLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23439 # 1ymtA.15.21 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 15 :SKDKKEKLI 1ymtA 238 :EDQVRARIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23440 # 1yovA.15.238 read from T0287.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKLI 1yovA 237 :YKEKEDFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=23441 # 1uw4B.15.16 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)S15 (1uw4B)S784 because Y (epsilon') conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1uw4B 785 :KVTTEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23442 # 1r7jA.15.32 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 15 :SKDKKEKLI 1r7jA 33 :SYALTGRYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23443 # 1oksA.15.16 read from T0287.t06.many.frag # found chain 1oksA in training set Warning: unaligning (T0287)S15 (1oksA)E17 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1oksA 18 :EDRKRYLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=23444 # 1xdpA.15.67 read from T0287.t06.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)D17 (1xdpA)S71 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SK 1xdpA 69 :SN T0287 18 :KKEKLI 1xdpA 72 :HSRHLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23446 # 1usyA.15.142 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)S15 (1usyA)P143 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1usyA 144 :KDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23447 # 1q52A.15.269 read from T0287.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)S15 (1q52A)D270 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1q52A 271 :GLVGQQLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23448 # 1zv1A.15.22 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)S15 (1zv1A)P23 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1zv1A 24 :WELMPLMY Number of specific fragments extracted= 1 number of extra gaps= 1 total=23449 # 1m0wA.15.6 read from T0287.t06.many.frag # found chain 1m0wA in training set T0287 15 :SKDKKEKLI 1m0wA 7 :SKDQLNELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23450 # 1gxjA.15.41 read from T0287.t06.many.frag # found chain 1gxjA in template set T0287 15 :SKDKKEKLI 1gxjA 526 :VDEKYSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23451 # 1x3zB.15.34 read from T0287.t06.many.frag # found chain 1x3zB in template set T0287 15 :SKDKKEKLI 1x3zB 272 :NPEALAPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23452 # 1elkA.15.46 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 15 :SKDKKEKLI 1elkA 43 :TEEGPKDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23453 # 1v0jA.15.114 read from T0287.t06.many.frag # found chain 1v0jA in template set Warning: unaligning (T0287)S15 (1v0jA)K115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)T118 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)T118 T0287 16 :K 1v0jA 116 :Y T0287 19 :KEKLI 1v0jA 119 :PEQAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=23455 # 1qkrA.16.62 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 16 :KDKKEKLIE 1qkrA 941 :SGNKRALIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23456 # 1on2A.16.35 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 16 :KDKKEKLIE 1on2A 36 :PSSVTKMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23457 # 1szhA.16.20 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 16 :KDKKEKLIE 1szhA 35 :RNRQECCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23458 # 1r6xA.16.15 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 16 :KDKKEKLIE 1r6xA 17 :ALKKNELLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23459 # 1uw4B.16.17 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 16 :KDKKEKLIE 1uw4B 785 :KVTTEKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23460 # 1aa7A.16.17 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1aa7A 19 :PLKAEIAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=23461 # 1w8iA.16.56 read from T0287.t06.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)D17 (1w8iA)L58 because E (beta_S) conformation "forbidden" or filtered. T0287 16 :K 1w8iA 57 :K T0287 18 :KKEKLIE 1w8iA 59 :PADKFLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23463 # 1lvaA.16.30 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 16 :KDKKEKLIE 1lvaA 407 :LEETRKLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23464 # 1r7jA.16.33 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 16 :KDKKEKLIE 1r7jA 34 :YALTGRYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23465 # 1otvA.16.200 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 16 :KDKKEKLIE 1otvA 201 :AEKQNRMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23466 # 1ci4A.16.52 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 16 :K 1ci4A 53 :K T0287 18 :KKEKLIE 1ci4A 55 :DEDLFRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23468 # 1usyA.16.143 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 16 :KDKKEKLIE 1usyA 144 :KDLHEKVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23469 # 1rzhM.16.241 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 16 :KDKKEKLIE 1rzhM 242 :GTAAERAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23470 # 1z0wA.16.188 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1z0wA 604 :KKKNRLMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23471 # 1g2yA.16.19 read from T0287.t06.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K18 (1g2yA)S22 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KD 1g2yA 20 :GL T0287 19 :KEKLIE 1g2yA 23 :KEALIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23473 # 1yovA.16.239 read from T0287.t06.many.frag # found chain 1yovA in template set T0287 16 :KDKKEKLIE 1yovA 237 :YKEKEDFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23474 # 1gxjA.16.42 read from T0287.t06.many.frag # found chain 1gxjA in template set T0287 16 :KDKKEKLIE 1gxjA 527 :DEKYSLAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23475 # 1ymtA.16.22 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 16 :KDKKEKLIE 1ymtA 239 :DQVRARIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23476 # 1hw1A.16.134 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 16 :KDKKEKLIE 1hw1A 135 :ADHADAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23477 # 1kxu.16.142 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 16 :KDKKEKLIE 1kxu 133 :PLGQEKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23478 # 1oksA.16.17 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 16 :KDKKEKLIE 1oksA 18 :EDRKRYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23479 # 1yiiA.16.30 read from T0287.t06.many.frag # found chain 1yiiA in training set T0287 16 :KDKKEKLIE 1yiiA 32 :GTDEETILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23480 # 1jr2A.16.139 read from T0287.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIE 1jr2A 122 :AEKLAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=23482 # 1q52A.16.270 read from T0287.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1q52A 272 :LVGQQLFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23483 # 1p4xA.16.63 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 16 :KDKKEKLIE 1p4xA 64 :QSDLVQHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23484 # 1m0wA.16.7 read from T0287.t06.many.frag # found chain 1m0wA in training set T0287 16 :KDKKEKLIE 1m0wA 8 :KDQLNELIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23485 # 1xdpA.16.68 read from T0287.t06.many.frag # found chain 1xdpA in template set T0287 16 :KDKKEKLIE 1xdpA 70 :NSHSRHLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23486 # 1x3zB.16.35 read from T0287.t06.many.frag # found chain 1x3zB in template set T0287 16 :KDKKEKLIE 1x3zB 273 :PEALAPLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23487 # 2d28C.16.3 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 16 :KDKKEKLIE 2d28C 4 :RSAETRIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23488 # 1zv1A.16.23 read from T0287.t06.many.frag # found chain 1zv1A in template set T0287 16 :KDKKEKLIE 1zv1A 24 :WELMPLMYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23489 # 1qkrA.17.63 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 17 :DKKEKLIES 1qkrA 942 :GNKRALIQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23490 # 1on2A.17.36 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 17 :DKKEKLIES 1on2A 37 :SSVTKMVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23491 # 1szhA.17.21 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 17 :DKKEKLIES 1szhA 36 :NRQECCIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23492 # 1uw4B.17.18 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)K18 (1uw4B)T787 because G (3-10) conformation "forbidden" or filtered. T0287 17 :D 1uw4B 786 :V T0287 19 :KEKLIES 1uw4B 788 :TEKVLRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23494 # 1r6xA.17.16 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 17 :DKKEKLIES 1r6xA 18 :LKKNELLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23495 # 1w8iA.17.57 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 17 :DKKEKLIES 1w8iA 58 :LPADKFLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23496 # 1usyA.17.144 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 17 :DKKEKLIES 1usyA 145 :DLHEKVLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23497 # 1aa7A.17.18 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 17 :DKKEKLIES 1aa7A 19 :PLKAEIAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23498 # 1r7jA.17.34 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 17 :DKKEKLIES 1r7jA 35 :ALTGRYIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23499 # 1ci4A.17.53 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 18 :KKEKLIES 1ci4A 55 :DEDLFREW Number of specific fragments extracted= 1 number of extra gaps= 1 total=23500 # 1lvaA.17.31 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 17 :DKKEKLIES 1lvaA 408 :EETRKLLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23501 # 1jr2A.17.140 read from T0287.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIES 1jr2A 122 :AEKLAEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23503 # 1otvA.17.201 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 17 :DKKEKLIES 1otvA 202 :EKQNRMLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23504 # 1yovA.17.240 read from T0287.t06.many.frag # found chain 1yovA in template set T0287 17 :DKKEKLIES 1yovA 238 :KEKEDFRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23505 # 1ymtA.17.23 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 17 :DKKEKLIES 1ymtA 240 :QVRARIVGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23506 # 1z0wA.17.189 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 17 :DKKEKLIES 1z0wA 604 :KKKNRLMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23507 # 1g2yA.17.20 read from T0287.t06.many.frag # found chain 1g2yA in training set T0287 17 :DKKEKLIES 1g2yA 21 :LSKEALIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23508 # 2d28C.17.4 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 17 :DKKEKLIES 2d28C 5 :SAETRIVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23509 # 1s9rA.17.88 read from T0287.t06.many.frag # found chain 1s9rA in training set T0287 17 :DKKEKLIES 1s9rA 89 :EAKDKLIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23510 # 1yiiA.17.31 read from T0287.t06.many.frag # found chain 1yiiA in training set T0287 17 :DKKEKLIES 1yiiA 33 :TDEETILKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23511 # 1q52A.17.271 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 17 :DKKEKLIES 1q52A 272 :LVGQQLFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23512 # 1kxu.17.143 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 17 :DKKEKLIES 1kxu 134 :LGQEKALEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23513 # 1oksA.17.18 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 17 :DKKEKLIES 1oksA 19 :DRKRYLMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23514 # 1rzhM.17.242 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 17 :DKKEKLIES 1rzhM 243 :TAAERAALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23515 # 1m0wA.17.8 read from T0287.t06.many.frag # found chain 1m0wA in training set T0287 17 :DKKEKLIES 1m0wA 9 :DQLNELIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23516 # 1x3zB.17.36 read from T0287.t06.many.frag # found chain 1x3zB in template set T0287 17 :DKKEKLIES 1x3zB 274 :EALAPLLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23517 # 1hw1A.17.135 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 17 :DKKEKLIES 1hw1A 136 :DHADAFAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23518 # 1wu7A.17.192 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K18 (1wu7A)S194 because P (beta_P) conformation "forbidden" or filtered. T0287 17 :D 1wu7A 193 :I T0287 19 :KEKLIES 1wu7A 195 :REEFVDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23520 # 1q08A.17.19 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 17 :DKKEKLIES 1q08A 62 :ESIRELLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23521 # 1gk9B.17.313 read from T0287.t06.many.frag # found chain 1gk9B in training set T0287 17 :DKKEKLIES 1gk9B 314 :DPRRQLVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=23522 # 1on2A.18.37 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 18 :KKEKLIESL 1on2A 38 :SVTKMVQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23523 # 1uw4B.18.19 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 18 :KKEKLIESL 1uw4B 787 :TTEKVLRQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23524 # 1r6xA.18.17 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 18 :KKEKLIESL 1r6xA 19 :KKNELLSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23525 # 1r7jA.18.35 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 18 :KKEKLIESL 1r7jA 36 :LTGRYIKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=23526 # 1w8iA.18.58 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 18 :KKEKLIESL 1w8iA 59 :PADKFLEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23527 # 1lvaA.18.32 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 18 :KKEKLIESL 1lvaA 409 :ETRKLLQSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23528 # 1szhA.18.22 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 18 :KKEKLIESL 1szhA 37 :RQECCIEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23529 # 1qkrA.18.64 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 18 :KKEKLIESL 1qkrA 943 :NKRALIQCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23530 # 1usyA.18.145 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 18 :KKEKLIESL 1usyA 146 :LHEKVLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23531 # 1aa7A.18.19 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 18 :KKEKLIESL 1aa7A 20 :LKAEIAQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23532 # 1jr2A.18.141 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 18 :KKEKLIESL 1jr2A 121 :NAEKLAEYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23533 # 2d28C.18.5 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 18 :KKEKLIESL 2d28C 6 :AETRIVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23534 # 1otvA.18.202 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 18 :KKEKLIESL 1otvA 203 :KQNRMLEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23535 # 1ci4A.18.54 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 18 :KKEKLIESL 1ci4A 55 :DEDLFREWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23536 # 1i58A.18.103 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 18 :KKEKLIESL 1i58A 455 :DKEKIIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23537 # 1yovA.18.241 read from T0287.t06.many.frag # found chain 1yovA in template set T0287 18 :KKEKLIESL 1yovA 239 :EKEDFRDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23538 # 1s9rA.18.89 read from T0287.t06.many.frag # found chain 1s9rA in training set T0287 18 :KKEKLIESL 1s9rA 90 :AKDKLIEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23539 # 1sflA.18.112 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 18 :KKEKLIESL 1sflA 113 :KHQRIITHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23540 # 1q52A.18.272 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 18 :KKEKLIESL 1q52A 273 :VGQQLFAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23541 # 1z0wA.18.190 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 18 :KKEKLIESL 1z0wA 605 :KKNRLMSKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23542 # 1kxu.18.144 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 18 :KKEKLIESL 1kxu 135 :GQEKALEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23543 # 2ahrA.18.170 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 18 :KKEKLIESL 2ahrA 168 :YIYLFIEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23544 # 1p4xA.18.65 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 18 :KKEKLIESL 1p4xA 66 :DLVQHIKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23545 # 1ctf.18.17 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 18 :KKEKLIESL 1ctf 64 :NKVAVIKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23546 # 1ymtA.18.24 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 18 :KKEKLIESL 1ymtA 241 :VRARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23547 # 1wu7A.18.193 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 18 :KKEKLIESL 1wu7A 194 :SREEFVDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23548 # 1yvrA.18.220 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 18 :KKEKLIESL 1yvrA 221 :ETEKVLKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23549 # 1m0wA.18.9 read from T0287.t06.many.frag # found chain 1m0wA in training set T0287 18 :KKEKLIESL 1m0wA 10 :QLNELIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23550 # 1yiiA.18.32 read from T0287.t06.many.frag # found chain 1yiiA in training set T0287 18 :KKEKLIESL 1yiiA 34 :DEETILKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23551 # 1dc1A.18.89 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 18 :KKEKLIESL 1dc1A 90 :DKKESINNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23552 # 1on2A.19.38 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 19 :KEKLIESLQ 1on2A 39 :VTKMVQKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23553 # 1uw4B.19.20 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 19 :KEKLIESLQ 1uw4B 788 :TEKVLRQMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23554 # 1w8iA.19.59 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 19 :KEKLIESLQ 1w8iA 60 :ADKFLEGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23555 # 2d28C.19.6 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 19 :KEKLIESLQ 2d28C 7 :ETRIVEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23556 # 1r7jA.19.36 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 19 :KEKLIESLQ 1r7jA 37 :TGRYIKMLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23557 # 1r6xA.19.18 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 19 :KEKLIESLQ 1r6xA 20 :KNELLSEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23558 # 1lvaA.19.33 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 19 :KEKLIESLQ 1lvaA 410 :TRKLLQSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23559 # 1szhA.19.23 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 19 :KEKLIESLQ 1szhA 38 :QECCIEIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23560 # 1aa7A.19.20 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 19 :KEKLIESLQ 1aa7A 21 :KAEIAQRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23561 # 1jr2A.19.142 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 19 :KEKLIESLQ 1jr2A 122 :AEKLAEYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23562 # 1ci4A.19.55 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 19 :KEKLIESLQ 1ci4A 56 :EDLFREWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23563 # 2ahrA.19.171 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 19 :KEKLIESLQ 2ahrA 169 :IYLFIEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23564 # 1i58A.19.104 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 19 :KEKLIESLQ 1i58A 456 :KEKIIRKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23565 # 1sflA.19.113 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 19 :KEKLIESLQ 1sflA 114 :HQRIITHLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23566 # 1jkeA.19.41 read from T0287.t06.many.frag # found chain 1jkeA in training set T0287 19 :KEKLIESLQ 1jkeA 42 :ANRLCERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23567 # 2fnuA.19.297 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 19 :KEKLIESLQ 2fnuA 298 :KKLILESLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23568 # 1usyA.19.146 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 19 :KEKLIESLQ 1usyA 147 :HEKVLNLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23569 # 1r71A.19.23 read from T0287.t06.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1r71A)A140 T0287 20 :EKLIESLQ 1r71A 141 :DQVIENLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=23570 # 1ctf.19.18 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 19 :KEKLIESLQ 1ctf 65 :KVAVIKAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23571 # 1otvA.19.203 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 19 :KEKLIESLQ 1otvA 204 :QNRMLEILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23572 # 1yovA.19.242 read from T0287.t06.many.frag # found chain 1yovA in template set T0287 19 :KEKLIESLQ 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23573 # 1dc1A.19.90 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 19 :KEKLIESLQ 1dc1A 91 :KKESINNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23574 # 1wu7A.19.194 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 19 :KEKLIESLQ 1wu7A 195 :REEFVDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23575 # 1q52A.19.273 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 19 :KEKLIESLQ 1q52A 274 :GQQLFAGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23576 # 1s9rA.19.90 read from T0287.t06.many.frag # found chain 1s9rA in training set T0287 19 :KEKLIESLQ 1s9rA 91 :KDKLIEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23577 # 1p4xA.19.66 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 19 :KEKLIESLQ 1p4xA 67 :LVQHIKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23578 # 1qkrA.19.65 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 19 :KEKLIESLQ 1qkrA 944 :KRALIQCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23579 # 2b0tA.19.90 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 19 :KEKLIESLQ 2b0tA 91 :LKAAIKELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23580 # 1kxu.19.145 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 19 :KEKLIESLQ 1kxu 136 :QEKALEQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23581 # 1ymtA.19.25 read from T0287.t06.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)Q27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ymtA)Q259 T0287 19 :KEKLIESL 1ymtA 242 :RARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23582 # 1on2A.20.39 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 20 :EKLIESLQE 1on2A 40 :TKMVQKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23583 # 1uw4B.20.21 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 20 :EKLIESLQE 1uw4B 789 :EKVLRQMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23584 # 2d28C.20.7 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 20 :EKLIESLQE 2d28C 8 :TRIVEALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23585 # 1w8iA.20.60 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 20 :EKLIESLQE 1w8iA 61 :DKFLEGFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23586 # 1r7jA.20.37 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 20 :EKLIESLQE 1r7jA 38 :GRYIKMLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23587 # 2ahrA.20.172 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 20 :EKLIESLQE 2ahrA 170 :YLFIEALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23588 # 1i58A.20.105 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 20 :EKLIESLQE 1i58A 457 :EKIIRKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23589 # 1lvaA.20.34 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 20 :EKLIESLQE 1lvaA 411 :RKLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23590 # 1sflA.20.114 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 20 :EKLIESLQE 1sflA 115 :QRIITHLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23591 # 1r6xA.20.19 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 20 :EKLIESLQE 1r6xA 21 :NELLSEAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23592 # 1r71A.20.24 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 20 :EKLIESLQE 1r71A 141 :DQVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23593 # 1ci4A.20.56 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 20 :EKLIESLQE 1ci4A 57 :DLFREWLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23594 # 1szhA.20.24 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 20 :EKLIESLQE 1szhA 39 :ECCIEIMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23595 # 1aa7A.20.21 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 20 :EKLIESLQE 1aa7A 22 :AEIAQRLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=23596 # 1dc1A.20.91 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 20 :EKLIESLQE 1dc1A 92 :KESINNLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23597 # 2fnuA.20.298 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 20 :EKLIESLQE 2fnuA 299 :KLILESLHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23598 # 1jr2A.20.143 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 20 :EKLIESLQE 1jr2A 123 :EKLAEYICS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23599 # 1jkeA.20.42 read from T0287.t06.many.frag # found chain 1jkeA in training set T0287 20 :EKLIESLQE 1jkeA 43 :NRLCERVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23600 # 1s9rA.20.91 read from T0287.t06.many.frag # found chain 1s9rA in training set T0287 20 :EKLIESLQE 1s9rA 92 :DKLIEEFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23601 # 1ctf.20.19 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 20 :EKLIESLQE 1ctf 66 :VAVIKAVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23602 # 2b0tA.20.91 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 20 :EKLIESLQE 2b0tA 92 :KAAIKELQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23603 # 1p4xA.20.67 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 20 :EKLIESLQE 1p4xA 68 :VQHIKVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23604 # 1kxu.20.146 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 20 :EKLIESLQE 1kxu 137 :EKALEQILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23605 # 1wu7A.20.195 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 20 :EKLIESLQE 1wu7A 196 :EEFVDQLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23606 # 1q52A.20.274 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 20 :EKLIESLQE 1q52A 275 :QQLFAGEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23607 # 1xg8A.20.66 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 20 :EKLIESLQE 1xg8A 58 :LQFIERIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23608 # 1oi7A.20.258 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 20 :EKLIESLQE 1oi7A 259 :ESKLRAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23609 # 1qvzA.20.81 read from T0287.t06.many.frag # found chain 1qvzA in template set T0287 20 :EKLIESLQE 1qvzA 82 :NKTLAKIKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23610 # 1otvA.20.204 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 20 :EKLIESLQE 1otvA 205 :NRMLEILQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23611 # 1pu6A.20.48 read from T0287.t06.many.frag # found chain 1pu6A in training set T0287 20 :EKLIESLQE 1pu6A 49 :LKSLENLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23612 # 2d28C.21.8 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 21 :KLIESLQEN 2d28C 9 :RIVEALLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=23613 # 1on2A.21.40 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 21 :KLIESLQEN 1on2A 41 :KMVQKLDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23614 # 1uw4B.21.22 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1uw4B 790 :KVLRQMRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23615 # 1w8iA.21.61 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 21 :KLIESLQEN 1w8iA 62 :KFLEGFVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=23616 # 1r7jA.21.38 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 21 :KLIESLQEN 1r7jA 39 :RYIKMLMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23617 # 1r71A.21.25 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 21 :KLIESLQEN 1r71A 142 :QVIENLQRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23618 # 1i58A.21.106 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 21 :KLIESLQEN 1i58A 458 :KIIRKAIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23619 # 1sflA.21.115 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 21 :KLIESLQEN 1sflA 116 :RIITHLQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23620 # 2ahrA.21.173 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 21 :KLIESLQEN 2ahrA 171 :LFIEALAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23621 # 1aa7A.21.22 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 21 :KLIESLQEN 1aa7A 23 :EIAQRLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23622 # 2fnuA.21.299 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 21 :KLIESLQEN 2fnuA 300 :LILESLHKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23623 # 1szhA.21.25 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 21 :KLIESLQEN 1szhA 40 :CCIEIMKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23624 # 1ci4A.21.57 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 21 :KLIESLQEN 1ci4A 58 :LFREWLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23625 # 1r6xA.21.20 read from T0287.t06.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)E28 (1r6xA)S29 because P (beta_P) conformation "forbidden" or filtered. T0287 21 :KLIESLQ 1r6xA 22 :ELLSEAQ T0287 29 :N 1r6xA 30 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=23627 # 1pu6A.21.49 read from T0287.t06.many.frag # found chain 1pu6A in training set T0287 21 :KLIESLQEN 1pu6A 50 :KSLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23628 # 1jkeA.21.43 read from T0287.t06.many.frag # found chain 1jkeA in training set T0287 21 :KLIESLQEN 1jkeA 44 :RLCERVLGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23629 # 1sd4A.21.28 read from T0287.t06.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)N29 (1sd4A)Y37 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1sd4A 29 :EIVVEIQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23630 # 1jr2A.21.144 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 21 :KLIESLQEN 1jr2A 124 :KLAEYICSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23631 # 1ctf.21.20 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 21 :KLIESLQEN 1ctf 67 :AVIKAVRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23632 # 1yj7A.21.48 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 21 :KLIESLQEN 1yj7A 68 :RAITILNNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23633 # 2b0tA.21.92 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 21 :KLIESLQEN 2b0tA 93 :AAIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23634 # 1lvaA.21.35 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 21 :KLIESLQEN 1lvaA 412 :KLLQSMAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23635 # 1oi7A.21.259 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 21 :KLIESLQEN 1oi7A 260 :SKLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23636 # 1dc1A.21.92 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 21 :KLIESLQEN 1dc1A 93 :ESINNLIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23637 # 2bwbA.21.8 read from T0287.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)N29 (2bwbA)M342 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 2bwbA 334 :HQLRQLND Number of specific fragments extracted= 1 number of extra gaps= 1 total=23638 # 1qvzA.21.82 read from T0287.t06.many.frag # found chain 1qvzA in template set T0287 21 :KLIESLQEN 1qvzA 83 :KTLAKIKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23639 # 1l0bA.21.75 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1l0bA 1664 :WVIKSIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=23640 # 2tpt.21.5 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 2tpt 6 :EIIRKKRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23641 # 1uj8A.21.41 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 21 :KLIESLQEN 1uj8A 42 :DMHQWICDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23642 # 1jalA.21.141 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 21 :KLIESLQEN 1jalA 142 :RAIQRLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23643 # 2d28C.22.9 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 22 :LIESLQENE 2d28C 10 :IVEALLERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23644 # 1on2A.22.41 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 22 :LIESLQENE 1on2A 42 :MVQKLDKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23645 # 1uw4B.22.23 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 22 :LIESLQENE 1uw4B 791 :VLRQMRKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23646 # 1i58A.22.107 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 22 :LIESLQENE 1i58A 459 :IIRKAIEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23647 # 1yj7A.22.49 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1yj7A 69 :AITILNNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=23648 # 1w8iA.22.62 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 22 :LIESLQENE 1w8iA 63 :FLEGFVESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23649 # 1l0bA.22.76 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1l0bA 1665 :VIKSIQE T0287 30 :E 1l0bA 1673 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=23651 # 1r71A.22.26 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 22 :LIESLQENE 1r71A 143 :VIENLQRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23652 # 1r7jA.22.39 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 22 :LIESLQENE 1r7jA 40 :YIKMLMDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23653 # 1sd4A.22.29 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 22 :LIESLQENE 1sd4A 30 :IVVEIQKYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23654 # 1sflA.22.116 read from T0287.t06.many.frag # found chain 1sflA in template set Warning: unaligning (T0287)E30 (1sflA)N125 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1sflA 117 :IITHLQQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=23655 # 2ahrA.22.174 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 22 :LIESLQENE 2ahrA 172 :FIEALAKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23656 # 2fnuA.22.300 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 22 :LIESLQENE 2fnuA 301 :ILESLHKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23657 # 1oi7A.22.260 read from T0287.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1oi7A 261 :KLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23658 # 1pu6A.22.50 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1pu6A 51 :SLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23659 # 1ctf.22.21 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 22 :LIESLQENE 1ctf 68 :VIKAVRGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23660 # 2b0tA.22.93 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 22 :LIESLQENE 2b0tA 94 :AIKELQDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23661 # 1szhA.22.26 read from T0287.t06.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)N29 (1szhA)G48 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1szhA 41 :CIEIMKF T0287 30 :E 1szhA 49 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=23663 # 1ci4A.22.58 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 22 :LIESLQENE 1ci4A 59 :FREWLKDTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23664 # 1r6xA.22.21 read from T0287.t06.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)Q27 (1r6xA)Q28 because G (3-10) conformation "forbidden" or filtered. T0287 22 :LIESL 1r6xA 23 :LLSEA T0287 28 :ENE 1r6xA 29 :SSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23666 # 1aa7A.22.23 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 22 :LIESLQENE 1aa7A 24 :IAQRLEDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23667 # 2tpt.22.6 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)E30 (2tpt)H15 because P (beta_P) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2tpt 7 :IIRKKRDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23668 # 1jr2A.22.145 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 22 :LIESLQENE 1jr2A 125 :LAEYICSRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23669 # 1nuuA.22.222 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1nuuA 223 :VITYIKDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=23670 # 2cz1A.22.24 read from T0287.t06.many.frag # found chain 2cz1A in template set T0287 22 :LIESLQENE 2cz1A 25 :LFRALDGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23671 # 2bwbA.22.9 read from T0287.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2bwbA 335 :QLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=23672 # 1lvaA.22.36 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 22 :LIESLQENE 1lvaA 413 :LLQSMAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23673 # 1uj8A.22.42 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 22 :LIESLQENE 1uj8A 43 :MHQWICDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23674 # 1jalA.22.142 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 22 :LIESLQENE 1jalA 143 :AIQRLQKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23675 # 1dc1A.22.93 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 22 :LIESLQENE 1dc1A 94 :SINNLIENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23676 # 2d28C.23.10 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2d28C 11 :VEALLER T0287 31 :L 2d28C 19 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=23678 # 1uw4B.23.24 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQE 1uw4B 792 :LRQMRK T0287 30 :EL 1uw4B 799 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=23680 # 1on2A.23.42 read from T0287.t06.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)E30 (1on2A)E50 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1on2A 43 :VQKLDKD T0287 31 :L 1on2A 51 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=23682 # 1i58A.23.108 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 23 :IESLQENEL 1i58A 460 :IRKAIEKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23683 # 1yj7A.23.50 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1yj7A 70 :ITILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=23685 # 1l0bA.23.77 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)Q27 (1l0bA)Q1670 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESL 1l0bA 1666 :IKSI T0287 28 :E 1l0bA 1671 :E T0287 30 :EL 1l0bA 1673 :KL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23688 # 1w8iA.23.63 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 23 :IESLQENEL 1w8iA 64 :LEGFVESGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23689 # 1r71A.23.27 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 23 :IESLQENEL 1r71A 144 :IENLQRNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23690 # 1sd4A.23.30 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 23 :IESLQENEL 1sd4A 31 :VVEIQKYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23691 # 1nuuA.23.223 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)N29 (1nuuA)H230 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQE 1nuuA 224 :ITYIKD T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23693 # 1pu6A.23.51 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1pu6A 52 :LENLKNA T0287 31 :L 1pu6A 60 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=23695 # 1oi7A.23.261 read from T0287.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)N29 (1oi7A)A268 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1oi7A 262 :LRAFAE T0287 31 :L 1oi7A 270 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=23697 # 2ahrA.23.175 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 23 :IESLQENEL 2ahrA 173 :IEALAKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23698 # 1uj8A.23.43 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 23 :IESLQENEL 1uj8A 44 :HQWICDLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=23699 # 1ctf.23.22 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 23 :IESLQENEL 1ctf 69 :IKAVRGATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23700 # 2bwbA.23.10 read from T0287.t06.many.frag # found chain 2bwbA in template set T0287 23 :IESLQENEL 2bwbA 336 :LRQLNDMGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23701 # 1r7jA.23.40 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 23 :IESLQENEL 1r7jA 41 :IKMLMDLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23702 # 2cz1A.23.25 read from T0287.t06.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2cz1A 26 :FRALDGK T0287 31 :L 2cz1A 34 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23704 # 1sflA.23.117 read from T0287.t06.many.frag # found chain 1sflA in template set Warning: unaligning (T0287)N29 (1sflA)Y124 because G (3-10) conformation "forbidden" or filtered. T0287 23 :IESLQE 1sflA 118 :ITHLQQ T0287 30 :EL 1sflA 125 :NK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23706 # 1ci4A.23.59 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQENE 1ci4A 60 :REWLKDTC Number of specific fragments extracted= 1 number of extra gaps= 1 total=23707 # 1jalA.23.143 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 23 :IESLQENEL 1jalA 144 :IQRLQKRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23708 # 2fnuA.23.301 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 23 :IESLQENEL 2fnuA 302 :LESLHKRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23709 # 1aa7A.23.24 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 23 :IESLQENEL 1aa7A 25 :AQRLEDVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23710 # 2hddA.23.18 read from T0287.t06.many.frag # found chain 2hddA in template set T0287 23 :IESLQENEL 2hddA 17 :KREFNENRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23711 # 2tpt.23.7 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 2tpt 8 :IRKKRD T0287 30 :EL 2tpt 15 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23713 # 1xg8A.23.69 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)N29 (1xg8A)D67 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1xg8A 61 :IERIEQ T0287 30 :EL 1xg8A 68 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23715 # 2ak3A.23.55 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 23 :IESLQENEL 2ak3A 55 :KTFIDQGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23716 # 1h5uA.23.741 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 23 :IESLQENEL 1h5uA 742 :IEQLSSGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23717 # 1k3xA.23.139 read from T0287.t06.many.frag # found chain 1k3xA in training set T0287 23 :IESLQENEL 1k3xA 140 :KERLLSPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23718 # 1jkeA.23.45 read from T0287.t06.many.frag # found chain 1jkeA in training set Warning: unaligning (T0287)N29 (1jkeA)Y52 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQE 1jkeA 46 :CERVLG T0287 30 :EL 1jkeA 53 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23720 # 2d28C.24.11 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2d28C 12 :EALLER T0287 31 :LL 2d28C 19 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23722 # 1i58A.24.109 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 24 :ESLQENEL 1i58A 461 :RKAIEKGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23723 # 1uw4B.24.25 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 24 :ESLQE 1uw4B 793 :RQMRK T0287 30 :ELL 1uw4B 799 :PWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23725 # 1yj7A.24.51 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 24 :ESLQENEL 1yj7A 71 :TILNNNGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23726 # 1on2A.24.43 read from T0287.t06.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)E30 (1on2A)E50 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1on2A 44 :QKLDKD T0287 31 :LL 1on2A 51 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23728 # 1l0bA.24.78 read from T0287.t06.many.frag # found chain 1l0bA in template set T0287 24 :ESLQENELL 1l0bA 1667 :KSIQERKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23729 # 1oi7A.24.262 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 24 :ESLQENELL 1oi7A 263 :RAFAEAGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23730 # 1pu6A.24.52 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1pu6A 53 :ENLKNA T0287 31 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23732 # 1nuuA.24.224 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)N29 (1nuuA)H230 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQE 1nuuA 225 :TYIKD T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=23734 # 2bwbA.24.11 read from T0287.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2bwbA 337 :RQLNDM T0287 31 :LL 2bwbA 344 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23736 # 1r71A.24.28 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 24 :ESLQENELL 1r71A 145 :ENLQRNELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23737 # 1whsA.24.196 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1whsA 190 :EFWWNH T0287 31 :LL 1whsA 197 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23739 # 1uj8A.24.44 read from T0287.t06.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 24 :ESLQE 1uj8A 45 :QWICD T0287 30 :ELL 1uj8A 51 :EDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23741 # 1w8iA.24.64 read from T0287.t06.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1w8iA 65 :EGFVES T0287 31 :LL 1w8iA 72 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23743 # 1r7jA.24.41 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 24 :ESLQENELL 1r7jA 42 :KMLMDLEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=23744 # 1u20A.24.186 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1u20A 187 :YALRSL T0287 31 :LL 1u20A 194 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23746 # 1ctf.24.23 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 24 :ESLQENELL 1ctf 70 :KAVRGATGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23747 # 1sd4A.24.31 read from T0287.t06.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. T0287 24 :ESLQEN 1sd4A 32 :VEIQKY T0287 31 :LL 1sd4A 39 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23749 # 1jalA.24.144 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 24 :ESLQENELL 1jalA 145 :QRLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23750 # 2ak3A.24.56 read from T0287.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2ak3A)K62 because P (beta_P) conformation "forbidden" or filtered. T0287 24 :ESLQE 2ak3A 56 :TFIDQ T0287 31 :LL 2ak3A 63 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23752 # 2cz1A.24.26 read from T0287.t06.many.frag # found chain 2cz1A in template set T0287 24 :ESLQENELL 2cz1A 27 :RALDGKGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23753 # 2fnuA.24.302 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 24 :ESLQENELL 2fnuA 303 :ESLHKRGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23754 # 1ig0A.24.106 read from T0287.t06.many.frag # found chain 1ig0A in training set T0287 24 :ESLQENELL 1ig0A 107 :KYYRKNKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23755 # 2tpt.24.8 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 2tpt 9 :RKKRD T0287 30 :ELL 2tpt 15 :HAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23757 # 1fiuA.24.13 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1fiuA 14 :KKLLDG T0287 31 :LL 1fiuA 21 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23759 # 2ahrA.24.176 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 24 :ESLQENELL 2ahrA 174 :EALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23760 # 1h5uA.24.742 read from T0287.t06.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)N29 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 1h5uA 743 :EQLSS T0287 30 :ELL 1h5uA 749 :FFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23762 # 1s7zA.24.20 read from T0287.t06.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1s7zA 20 :ENIRYD T0287 31 :LL 1s7zA 27 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23764 # 1qvzA.24.85 read from T0287.t06.many.frag # found chain 1qvzA in template set T0287 24 :ESLQENELL 1qvzA 86 :AKIKTPKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23765 # 1ci4A.24.60 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQENE 1ci4A 61 :EWLKDTC T0287 32 :L 1ci4A 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=23767 # 2d28C.25.12 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 2d28C 13 :ALLER T0287 31 :LLN 2d28C 19 :RLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23769 # 1i58A.25.110 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENEL 1i58A 462 :KAIEKGL T0287 33 :N 1i58A 470 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=23771 # 1whsA.25.197 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1whsA 191 :FWWNH T0287 31 :LLN 1whsA 197 :IVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23773 # 1nuuA.25.225 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1nuuA 226 :YIKDH T0287 31 :L 1nuuA 232 :L T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=23776 # 1oi7A.25.263 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 25 :SLQENELLN 1oi7A 264 :AFAEAGIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23777 # 1pu6A.25.53 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQEN 1pu6A 54 :NLKNA T0287 31 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23779 # 1yj7A.25.52 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)N29 (1yj7A)N76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 25 :SLQE 1yj7A 72 :ILNN T0287 31 :L 1yj7A 78 :F T0287 33 :N 1yj7A 80 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=23782 # 1u20A.25.187 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQEN 1u20A 188 :ALRSL T0287 31 :LL 1u20A 194 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23784 # 2bwbA.25.12 read from T0287.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 2bwbA 338 :QLNDM T0287 31 :LLN 2bwbA 344 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23786 # 1l0bA.25.79 read from T0287.t06.many.frag # found chain 1l0bA in template set T0287 25 :SLQENELLN 1l0bA 1668 :SIQERKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23787 # 1uw4B.25.26 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQENELL 1uw4B 794 :QMRKLPWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=23788 # 1jalA.25.145 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 25 :SLQENELLN 1jalA 146 :RLQKRAKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23789 # 2ahrA.25.177 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 T0287 25 :SLQENELL 2ahrA 175 :ALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23790 # 1fzcA.25.18 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 25 :SLQENELLN 1fzcA 129 :KVQHIQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23791 # 1on2A.25.44 read from T0287.t06.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)N33 (1on2A)I53 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENELL 1on2A 45 :KLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23792 # 2ak3A.25.57 read from T0287.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2ak3A)K62 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQE 2ak3A 57 :FIDQ T0287 31 :LLN 2ak3A 63 :LIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23794 # 1s7zA.25.21 read from T0287.t06.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1s7zA 21 :NIRYD T0287 31 :LLN 1s7zA 27 :IRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23796 # 1hynP.25.137 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 25 :SLQENELLN 1hynP 138 :RFIFEDQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23797 # 1uj8A.25.45 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 25 :SLQENELLN 1uj8A 46 :WICDLEDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23798 # 1fiuA.25.14 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQEN 1fiuA 15 :KLLDG T0287 31 :LL 1fiuA 21 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23800 # 1h5uA.25.743 read from T0287.t06.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)N29 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQE 1h5uA 744 :QLSS T0287 30 :ELLN 1h5uA 749 :FFSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23802 # 2ao9A.25.33 read from T0287.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 25 :SLQENEL 2ao9A 34 :LLVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23803 # 1ctf.25.24 read from T0287.t06.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQENE 1ctf 71 :AVRGAT T0287 32 :LN 1ctf 78 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23805 # 1vjrA.25.68 read from T0287.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0287)N33 (1vjrA)V65 because E (beta_S) conformation "forbidden" or filtered. T0287 25 :SLQENELL 1vjrA 57 :KLRNMGVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23806 # 1go3F.25.39 read from T0287.t06.many.frag # found chain 1go3F in training set Warning: unaligning (T0287)N29 (1go3F)F44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1go3F)A45 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQE 1go3F 40 :YLQK T0287 31 :LLN 1go3F 46 :KLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23808 # 2hddA.25.20 read from T0287.t06.many.frag # found chain 2hddA in template set T0287 25 :SLQENELLN 2hddA 19 :EFNENRYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23809 # 2tpt.25.9 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2tpt)S18 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQE 2tpt 10 :KKRD T0287 30 :ELL 2tpt 15 :HAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23811 # 2cz1A.25.27 read from T0287.t06.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 2cz1A 28 :ALDGK T0287 31 :LLN 2cz1A 34 :LVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23813 # 1cy5A.25.27 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1cy5A)T36 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQEN 1cy5A 28 :HMISD T0287 31 :LL 1cy5A 34 :FL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23815 # 2b8nA.25.227 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)E30 (2b8nA)G221 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 2b8nA 216 :VLEKY T0287 31 :LLN 2b8nA 222 :IET Number of specific fragments extracted= 2 number of extra gaps= 1 total=23817 # 1whsA.26.198 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1whsA 192 :WWNH T0287 31 :LLNT 1whsA 197 :IVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23819 # 1i58A.26.111 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1i58A)D470 because E (beta_S) conformation "forbidden" or filtered. T0287 26 :LQENEL 1i58A 463 :AIEKGL T0287 34 :T 1i58A 471 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=23821 # 2d28C.26.13 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 2d28C 14 :LLER T0287 31 :LLNT 2d28C 19 :RLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23823 # 1u20A.26.188 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1u20A 189 :LRSL T0287 31 :LLNT 1u20A 194 :LLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23825 # 1pu6A.26.54 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQEN 1pu6A 55 :LKNA T0287 31 :LL 1pu6A 60 :IL T0287 34 :T 1pu6A 63 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=23828 # 1hynP.26.138 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1hynP 139 :FIFE T0287 31 :LLNT 1hynP 144 :QIRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23830 # 1nuuA.26.226 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 26 :LQEN 1nuuA 227 :IKDH T0287 31 :L 1nuuA 232 :L T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=23833 # 1fiuA.26.15 read from T0287.t06.many.frag # found chain 1fiuA in training set T0287 26 :LQENELLNT 1fiuA 16 :LLDGNILAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23834 # 1cy5A.26.28 read from T0287.t06.many.frag # found chain 1cy5A in training set T0287 26 :LQENELLNT 1cy5A 29 :MISDGFLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23835 # 1l0bA.26.80 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQE 1l0bA 1669 :IQE T0287 30 :ELLNT 1l0bA 1673 :KLLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23837 # 2ahrA.26.178 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 26 :LQENELL 2ahrA 176 :LAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23838 # 1yj7A.26.53 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 26 :LQENEL 1yj7A 73 :LNNNGF T0287 33 :NT 1yj7A 80 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23840 # 1oi7A.26.264 read from T0287.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1oi7A 265 :FAEA T0287 31 :LLNT 1oi7A 270 :IPVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23842 # 1fzcA.26.19 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 26 :LQENELLNT 1fzcA 130 :VQHIQLLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23843 # 2ak3A.26.58 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 26 :LQENELLNT 2ak3A 58 :IDQGKLIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23844 # 1jalA.26.146 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 26 :LQENELLNT 1jalA 147 :LQKRAKGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23845 # 1vfgA.26.177 read from T0287.t06.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1vfgA 178 :AVNL T0287 31 :LLNT 1vfgA 183 :LLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23847 # 2bwbA.26.13 read from T0287.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)N33 (2bwbA)D346 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENELL 2bwbA 339 :LNDMGFF T0287 34 :T 2bwbA 347 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=23849 # 2etjA.26.211 read from T0287.t06.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 2etjA 200 :FFEK T0287 31 :LLNT 2etjA 205 :LISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23851 # 1uj8A.26.46 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 26 :LQENELLNT 1uj8A 47 :ICDLEDFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23852 # 2ao9A.26.34 read from T0287.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 26 :LQENEL 2ao9A 35 :LVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23853 # 1s7zA.26.22 read from T0287.t06.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1s7zA 22 :IRYD T0287 31 :LLNT 1s7zA 27 :IRDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23855 # 1uw4B.26.27 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 26 :LQENELLNT 1uw4B 795 :MRKLPWQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23856 # 1jg1A.26.27 read from T0287.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0287)E30 (1jg1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1jg1A 28 :LKAE T0287 31 :LLNT 1jg1A 33 :IIRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23858 # 2tpt.26.10 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2tpt)S18 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQE 2tpt 11 :KRD T0287 30 :ELL 2tpt 15 :HAL T0287 34 :T 2tpt 19 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=23861 # 1go3F.26.40 read from T0287.t06.many.frag # found chain 1go3F in training set Warning: unaligning (T0287)E30 (1go3F)A45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1go3F)L47 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQEN 1go3F 41 :LQKF T0287 31 :L 1go3F 46 :K T0287 33 :NT 1go3F 48 :DK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23864 # 1gqeA.26.40 read from T0287.t06.many.frag # found chain 1gqeA in template set Warning: unaligning (T0287)E28 (1gqeA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQ 1gqeA 41 :LE T0287 29 :NELLNT 1gqeA 44 :PDVWNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23866 # 1ctf.26.25 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 26 :LQENELLNT 1ctf 72 :VRGATGLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23867 # 2d3dA.26.52 read from T0287.t06.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 2d3dA 488 :LEKK T0287 31 :LL 2d3dA 493 :VL T0287 34 :T 2d3dA 496 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=23870 # 1ci4A.26.62 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 26 :LQENE 1ci4A 63 :LKDTC T0287 32 :LNT 1ci4A 69 :ANA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23872 # 1whsA.27.199 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N29 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. T0287 27 :QE 1whsA 193 :WN T0287 30 :ELLNTD 1whsA 196 :GIVSDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23874 # 1hynP.27.139 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1hynP 140 :IFE T0287 31 :LLNTD 1hynP 144 :QIRPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23876 # 1u20A.27.189 read from T0287.t06.many.frag # found chain 1u20A in template set T0287 27 :QENELLNTD 1u20A 190 :RSLKLLRED Number of specific fragments extracted= 1 number of extra gaps= 0 total=23877 # 1pu6A.27.55 read from T0287.t06.many.frag # found chain 1pu6A in training set T0287 27 :QENELLNTD 1pu6A 56 :KNAFILEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=23878 # 1i58A.27.112 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QEN 1i58A 464 :IEK T0287 31 :L 1i58A 468 :L T0287 33 :NTD 1i58A 470 :DES Number of specific fragments extracted= 3 number of extra gaps= 2 total=23881 # 1cy5A.27.29 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1cy5A 30 :ISD T0287 31 :LLNTD 1cy5A 34 :FLTIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23883 # 2d28C.27.14 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 2d28C 15 :LER T0287 31 :LLNTD 2d28C 19 :RLKDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23885 # 1u3eM.27.100 read from T0287.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1u3eM 101 :MSR T0287 31 :LLNTD 1u3eM 105 :TLNVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23887 # 1nuuA.27.227 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)N29 (1nuuA)H230 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 27 :QE 1nuuA 228 :KD T0287 30 :EL 1nuuA 231 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23889 # 2etjA.27.212 read from T0287.t06.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 2etjA 201 :FEK T0287 31 :LLNTD 2etjA 205 :LISEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23891 # 1fzcA.27.20 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 27 :QENELLNTD 1fzcA 131 :QHIQLLQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23892 # 1fiuA.27.16 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QEN 1fiuA 17 :LDG T0287 31 :LL 1fiuA 21 :IL T0287 34 :TD 1fiuA 24 :TN Number of specific fragments extracted= 3 number of extra gaps= 2 total=23895 # 2d3dA.27.53 read from T0287.t06.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QENELL 2d3dA 489 :EKKGVL T0287 34 :TD 2d3dA 496 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23897 # 1kicA.27.102 read from T0287.t06.many.frag # found chain 1kicA in training set Warning: unaligning (T0287)N29 (1kicA)M93 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QE 1kicA 91 :DD T0287 30 :ELLNTD 1kicA 94 :PILNIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23899 # 2ahrA.27.179 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 27 :QENELL 2ahrA 177 :AKAGVK T0287 35 :D 2ahrA 185 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=23901 # 1l0bA.27.81 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)Q27 (1l0bA)Q1670 because G (3-10) conformation "forbidden" or filtered. T0287 28 :ENELLNTD 1l0bA 1671 :ERKLLSVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=23902 # 2ak3A.27.59 read from T0287.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 27 :QE 2ak3A 59 :DQ T0287 30 :ELLNTD 2ak3A 62 :KLIPDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23904 # 1vfgA.27.178 read from T0287.t06.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1vfgA 179 :VNL T0287 31 :LLNTD 1vfgA 183 :LLKEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23906 # 1oi7A.27.265 read from T0287.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1oi7A 266 :AEA T0287 31 :LLNTD 1oi7A 270 :IPVAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23908 # 1qqfA.27.22 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)Q27 (1qqfA)E1032 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 28 :ENELL 1qqfA 1033 :QWEKF T0287 35 :D 1qqfA 1040 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=23910 # 1utg.27.42 read from T0287.t06.many.frag # found chain 1utg in training set T0287 27 :QENELLNTD 1utg 43 :KVLDSLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23911 # 1uj8A.27.47 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 27 :QENELLNTD 1uj8A 48 :CDLEDFDDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23912 # 1qvzA.27.88 read from T0287.t06.many.frag # found chain 1qvzA in template set T0287 27 :QENELLNTD 1qvzA 89 :KTPKEVNAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23913 # 1jalA.27.147 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 27 :QENELLNTD 1jalA 148 :QKRAKGGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23914 # 1s7zA.27.23 read from T0287.t06.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1s7zA 23 :RYD T0287 31 :LLNTD 1s7zA 27 :IRDTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23916 # 1jg1A.27.28 read from T0287.t06.many.frag # found chain 1jg1A in training set T0287 27 :QENELLNTD 1jg1A 29 :KAEGIIRSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23917 # 1m40A.27.168 read from T0287.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 27 :QENELLN 1m40A 194 :LTGELLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=23918 # 2ao9A.27.35 read from T0287.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 27 :QENEL 2ao9A 36 :VENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23919 # 1gqeA.27.41 read from T0287.t06.many.frag # found chain 1gqeA in template set Warning: unaligning (T0287)E28 (1gqeA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :Q 1gqeA 42 :E T0287 29 :NELLNTD 1gqeA 44 :PDVWNEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23921 # 1k3yA.27.105 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 T0287 27 :QENELLNT 1k3yA 107 :LLLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=23922 # 1whsA.28.200 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1whsA 194 :NH T0287 31 :LLNTDE 1whsA 197 :IVSDDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23924 # 1u20A.28.190 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)N29 (1u20A)L192 because G (3-10) conformation "forbidden" or filtered. T0287 28 :E 1u20A 191 :S T0287 30 :ELLNTDE 1u20A 193 :KLLREDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23926 # 1hynP.28.140 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 28 :ENELLNTDE 1hynP 141 :FEDQIRPQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23927 # 1pu6A.28.56 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :ENELL 1pu6A 57 :NAFIL T0287 34 :TDE 1pu6A 63 :NDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23929 # 1u3eM.28.101 read from T0287.t06.many.frag # found chain 1u3eM in template set T0287 28 :ENELLNTDE 1u3eM 102 :SRGTLNVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23930 # 2d3dA.28.54 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 28 :ENELLNTDE 2d3dA 490 :KKGVLALGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23931 # 1i58A.28.113 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1i58A 465 :EK T0287 31 :LLNTDE 1i58A 468 :LIDESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23933 # 1k3yA.28.106 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 28 :ENELLNT 1k3yA 108 :LLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=23934 # 1cy5A.28.30 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1cy5A 31 :SD T0287 31 :LLNTDE 1cy5A 34 :FLTISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23936 # 1kicA.28.103 read from T0287.t06.many.frag # found chain 1kicA in training set T0287 28 :ENELLNTDE 1kicA 92 :DMPILNIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23937 # 1qqfA.28.23 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 28 :ENELL 1qqfA 1033 :QWEKF T0287 35 :DE 1qqfA 1040 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23939 # 2etjA.28.213 read from T0287.t06.many.frag # found chain 2etjA in template set T0287 28 :ENELLNTDE 2etjA 202 :EKGLISENR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23940 # 1fzcA.28.21 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 28 :ENELLNTDE 1fzcA 132 :HIQLLQKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23941 # 2ahrA.28.180 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 28 :ENELL 2ahrA 178 :KAGVK T0287 35 :DE 2ahrA 185 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23943 # 1rr7A.28.85 read from T0287.t06.many.frag # found chain 1rr7A in template set T0287 28 :ENELLNTDE 1rr7A 86 :IWNDFNGRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23944 # 1cr1A.28.88 read from T0287.t06.many.frag # found chain 1cr1A in template set Warning: unaligning (T0287)E28 (1cr1A)R359 because L (left) conformation "forbidden" or filtered. T0287 29 :NELLNTDE 1cr1A 360 :VRLRQSDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23945 # 1uw4B.28.29 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :E 1uw4B 797 :K T0287 30 :ELLNTDE 1uw4B 799 :PWQDQEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23947 # 1utg.28.43 read from T0287.t06.many.frag # found chain 1utg in training set T0287 28 :ENELLNTDE 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23948 # 1m40A.28.169 read from T0287.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)N33 (1m40A)T200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 28 :ENELL 1m40A 195 :TGELL T0287 36 :E 1m40A 203 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=23950 # 1vfgA.28.179 read from T0287.t06.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)N29 (1vfgA)L181 because G (3-10) conformation "forbidden" or filtered. T0287 28 :E 1vfgA 180 :N T0287 30 :ELLNTDE 1vfgA 182 :GLLKEAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23952 # 1gqeA.28.42 read from T0287.t06.many.frag # found chain 1gqeA in template set T0287 28 :ENELLNTDE 1gqeA 43 :QPDVWNEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23953 # 2ak3A.28.60 read from T0287.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2ak3A)K62 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :E 2ak3A 60 :Q T0287 31 :LLNTDE 2ak3A 63 :LIPDDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23955 # 2cwyA.28.25 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 28 :ENELLNTDE 2cwyA 26 :PYWLKATGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23956 # 1fiuA.28.17 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :ENELL 1fiuA 18 :DGNIL T0287 34 :TDE 1fiuA 24 :TNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23958 # 1jalA.28.148 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 28 :ENELLNTDE 1jalA 149 :KRAKGGDKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23959 # 1x2iA.28.17 read from T0287.t06.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)E30 (1x2iA)P17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L31 (1x2iA)H18 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1x2iA 15 :GL T0287 32 :LNTDE 1x2iA 19 :VSATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23961 # 1s7zA.28.24 read from T0287.t06.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1s7zA 24 :YD T0287 31 :LLNTDE 1s7zA 27 :IRDTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23963 # 1uj8A.28.48 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 28 :ENELLNTDE 1uj8A 49 :DLEDFDDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23964 # 2d28C.28.15 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 2d28C 16 :ER T0287 31 :LLNTDE 2d28C 19 :RLKDTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23966 # 1ix9A.28.58 read from T0287.t06.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (1ix9A)K59 T0287 29 :NELLNTDE 1ix9A 60 :LDQLPADK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23967 # 1whsA.29.201 read from T0287.t06.many.frag # found chain 1whsA in template set T0287 29 :NELLNTDEK 1whsA 195 :HGIVSDDTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23968 # 1hynP.29.141 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1hynP 142 :E T0287 31 :LLNTDEK 1hynP 144 :QIRPQDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23970 # 1pu6A.29.57 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (1pu6A)D64 because E (beta_S) conformation "forbidden" or filtered. T0287 29 :NELL 1pu6A 58 :AFIL T0287 34 :T 1pu6A 63 :N T0287 36 :EK 1pu6A 65 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=23973 # 1u20A.29.191 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u20A 192 :L T0287 31 :LLNTDEK 1u20A 194 :LLREDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23975 # 1k3yA.29.107 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 29 :NELLNT 1k3yA 109 :LPVCPP T0287 37 :K 1k3yA 117 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=23977 # 1u3eM.29.102 read from T0287.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u3eM)N107 because E (beta_S) conformation "forbidden" or filtered. T0287 29 :N 1u3eM 103 :R T0287 31 :LL 1u3eM 105 :TL T0287 34 :TDEK 1u3eM 108 :VSKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=23980 # 2d3dA.29.55 read from T0287.t06.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :N 2d3dA 491 :K T0287 31 :LLNTDEK 2d3dA 493 :VLALGAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23982 # 1cr1A.29.89 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 29 :NELLNTDEK 1cr1A 360 :VRLRQSDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23983 # 2cwyA.29.26 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 29 :NELLNTDEK 2cwyA 27 :YWLKATGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23984 # 1kicA.29.104 read from T0287.t06.many.frag # found chain 1kicA in training set T0287 29 :NELLNTDEK 1kicA 93 :MPILNIPEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23985 # 1cy5A.29.31 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :N 1cy5A 32 :D T0287 31 :LLNTDEK 1cy5A 34 :FLTISEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23987 # 1vflA.29.330 read from T0287.t06.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)N33 (1vflA)P333 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NELL 1vflA 329 :SSFL T0287 34 :TDEK 1vflA 334 :EDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23989 # 1qqfA.29.24 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 29 :NELL 1qqfA 1034 :WEKF T0287 35 :DEK 1qqfA 1040 :EKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23991 # 1ix9A.29.59 read from T0287.t06.many.frag # found chain 1ix9A in training set T0287 29 :NELLNTDEK 1ix9A 60 :LDQLPADKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23992 # 2etjA.29.214 read from T0287.t06.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 29 :N 2etjA 203 :K T0287 31 :LLNTDEK 2etjA 205 :LISENRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23994 # 1i58A.29.114 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 29 :N 1i58A 466 :K T0287 31 :L 1i58A 468 :L T0287 33 :NTDEK 1i58A 470 :DESKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=23997 # 1yrbA.29.180 read from T0287.t06.many.frag # found chain 1yrbA in template set T0287 29 :NELLNTDEK 1yrbA 167 :VDLLSEEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23998 # 1d2tA.29.52 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 29 :NELLNTD 1d2tA 53 :RLLRNTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=23999 # 1uptB.29.32 read from T0287.t06.many.frag # found chain 1uptB in training set T0287 29 :NELLNTDEK 1uptB 2201 :VLKFPDDQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24000 # 1uw4B.29.30 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1uw4B 799 :PWQ T0287 34 :TDEK 1uw4B 803 :QEVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=24002 # 1f74A.29.50 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 29 :NELLNTDEK 1f74A 51 :NFMLSTEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24003 # 1rr7A.29.86 read from T0287.t06.many.frag # found chain 1rr7A in template set Warning: unaligning (T0287)N33 (1rr7A)N91 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1rr7A)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :NELL 1rr7A 87 :WNDF T0287 35 :DEK 1rr7A 93 :RNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24005 # 1m40A.29.170 read from T0287.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 29 :NELLN 1m40A 196 :GELLT T0287 36 :EK 1m40A 203 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24007 # 1fzcA.29.22 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 29 :NELLNTDEK 1fzcA 133 :IQLLQKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24008 # 1x2iA.29.18 read from T0287.t06.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)L31 (1x2iA)H18 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1x2iA)S20 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NE 1x2iA 16 :LP T0287 32 :L 1x2iA 19 :V T0287 34 :TDEK 1x2iA 21 :ATLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=24011 # 1u61A.29.64 read from T0287.t06.many.frag # found chain 1u61A in template set T0287 29 :NELLNTDEK 1u61A 62 :TAFLTEEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24012 # 1y0nA.29.6 read from T0287.t06.many.frag # found chain 1y0nA in template set T0287 29 :NELLNTDEK 1y0nA 5 :HDLLEADTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24013 # 1vfgA.29.180 read from T0287.t06.many.frag # found chain 1vfgA in template set T0287 29 :NELLNTDEK 1vfgA 181 :LGLLKEAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24014 # 1gqeA.29.43 read from T0287.t06.many.frag # found chain 1gqeA in template set T0287 29 :NELLNTDEK 1gqeA 44 :PDVWNEPER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24015 # 1jalA.29.149 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 29 :NELLNTDEK 1jalA 150 :RAKGGDKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24016 # 1hynP.30.142 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1hynP 144 :QIRPQDRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24017 # 2cwyA.30.27 read from T0287.t06.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 2cwyA 28 :WLK T0287 34 :TDEKK 2cwyA 32 :TGEER Number of specific fragments extracted= 2 number of extra gaps= 1 total=24019 # 1k3yA.30.108 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 30 :ELLNT 1k3yA 110 :PVCPP T0287 37 :KK 1k3yA 117 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24021 # 1whsA.30.202 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1whsA 197 :IVSDDTYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24022 # 1u3eM.30.103 read from T0287.t06.many.frag # found chain 1u3eM in template set T0287 30 :ELLNTDEKK 1u3eM 104 :GTLNVSKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24023 # 1u20A.30.192 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1u20A 194 :LLREDQIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24024 # 1pu6A.30.58 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 30 :ELL 1pu6A 59 :FIL T0287 34 :TDEKK 1pu6A 63 :NDDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24026 # 1cr1A.30.90 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 30 :ELLNTDEKK 1cr1A 361 :RLRQSDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24027 # 2d3dA.30.56 read from T0287.t06.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 2d3dA 493 :VLALGARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24028 # 1vflA.30.331 read from T0287.t06.many.frag # found chain 1vflA in template set T0287 30 :ELLNTDEKK 1vflA 330 :SFLPEDEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24029 # 1qqfA.30.25 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 30 :ELL 1qqfA 1035 :EKF T0287 35 :DEKK 1qqfA 1040 :EKRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24031 # 1yrbA.30.181 read from T0287.t06.many.frag # found chain 1yrbA in template set Warning: unaligning (T0287)N33 (1yrbA)S171 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1yrbA 168 :DLL T0287 34 :TDEKK 1yrbA 172 :EEEKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24033 # 1ix9A.30.60 read from T0287.t06.many.frag # found chain 1ix9A in training set T0287 30 :ELLNTDEKK 1ix9A 61 :DQLPADKKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24034 # 1kicA.30.105 read from T0287.t06.many.frag # found chain 1kicA in training set T0287 30 :ELLNTDEKK 1kicA 94 :PILNIPENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24035 # 1uptB.30.33 read from T0287.t06.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. T0287 30 :E 1uptB 2202 :L T0287 32 :LNTDEKK 1uptB 2204 :FPDDQTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24037 # 1d2tA.30.53 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 30 :ELLNTD 1d2tA 54 :LLRNTE T0287 38 :K 1d2tA 62 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=24039 # 1w33A.30.116 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 30 :ELLNTDEKK 1w33A 186 :ENLSQEESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24040 # 1f74A.30.51 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 30 :ELLNTDEKK 1f74A 52 :FMLSTEEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24041 # 1e9rA.30.195 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 30 :ELLNTDEKK 1e9rA 266 :LFAGSNEAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24042 # 1cy5A.30.32 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1cy5A 34 :FLTISEEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24043 # 1uw4B.30.31 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 30 :ELLNTDEKK 1uw4B 799 :PWQDQEVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24044 # 1jalA.30.150 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 30 :ELLNTDEKK 1jalA 151 :AKGGDKEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24045 # 1g73A.30.66 read from T0287.t06.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)N33 (1g73A)N70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 30 :ELL 1g73A 67 :GKM T0287 35 :DEKK 1g73A 72 :EEED Number of specific fragments extracted= 2 number of extra gaps= 1 total=24047 # 1u7kA.30.60 read from T0287.t06.many.frag # found chain 1u7kA in template set T0287 30 :ELLNTDEKK 1u7kA 61 :TLLTGEEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24048 # 1y0nA.30.7 read from T0287.t06.many.frag # found chain 1y0nA in template set T0287 30 :ELLNTDEKK 1y0nA 6 :DLLEADTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24049 # 2etjA.30.215 read from T0287.t06.many.frag # found chain 2etjA in template set T0287 30 :ELLNTDEKK 2etjA 204 :GLISENRFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24050 # 1uslA.30.138 read from T0287.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1uslA)W132 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1uslA)W132 T0287 32 :LNTDEKK 1uslA 133 :SKAQRHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24051 # 1u84A.30.39 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 30 :ELLNTDEKK 1u84A 37 :AVYETEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24052 # 2ahmA.30.42 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 30 :ELLNTDEKK 2ahmA 43 :DILLAKDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24053 # 1ydiA.30.185 read from T0287.t06.many.frag # found chain 1ydiA in template set T0287 30 :ELLNTDEKK 1ydiA 181 :ELTHQEHRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24054 # 2cwyA.31.28 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 31 :LLNTDEKKK 2cwyA 29 :LKATGEERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24055 # 1hynP.31.143 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 31 :LLNTDEKKK 1hynP 144 :QIRPQDREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24056 # 1k3yA.31.109 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 31 :LLNT 1k3yA 111 :VCPP T0287 37 :KKK 1k3yA 117 :KDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24058 # 2d3dA.31.57 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 31 :LLNTDEKKK 2d3dA 493 :VLALGARRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24059 # 1cr1A.31.91 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 31 :LLNTDEKKK 1cr1A 362 :LRQSDSLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24060 # 1qqfA.31.26 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 31 :LL 1qqfA 1036 :KF T0287 35 :DEKKK 1qqfA 1040 :EKRQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24062 # 1u3eM.31.104 read from T0287.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)N33 (1u3eM)N107 because E (beta_S) conformation "forbidden" or filtered. T0287 31 :LL 1u3eM 105 :TL T0287 34 :TDEKKK 1u3eM 108 :VSKAQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24064 # 1w33A.31.117 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 31 :LLNTDEKKK 1w33A 187 :NLSQEESKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24065 # 1whsA.31.203 read from T0287.t06.many.frag # found chain 1whsA in template set T0287 31 :LLNTDEKKK 1whsA 197 :IVSDDTYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24066 # 1u20A.31.193 read from T0287.t06.many.frag # found chain 1u20A in template set T0287 31 :LLNTDEKKK 1u20A 194 :LLREDQIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24067 # 1b4fA.31.53 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 31 :LLNTDEKKK 1b4fA 54 :VTLAGHQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24068 # 1vflA.31.332 read from T0287.t06.many.frag # found chain 1vflA in template set T0287 31 :LLNTDEKKK 1vflA 331 :FLPEDEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24069 # 1uptB.31.34 read from T0287.t06.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. T0287 32 :LNTDEKKK 1uptB 2204 :FPDDQTQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24070 # 1yrbA.31.182 read from T0287.t06.many.frag # found chain 1yrbA in template set T0287 31 :LLNTDEKKK 1yrbA 169 :LLSEEEKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24071 # 1ix9A.31.61 read from T0287.t06.many.frag # found chain 1ix9A in training set T0287 31 :LLNTDEKKK 1ix9A 62 :QLPADKKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24072 # 1e9rA.31.196 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 31 :LLNTDEKKK 1e9rA 267 :FAGSNEASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24073 # 1u84A.31.40 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 31 :LLNTDEKKK 1u84A 38 :VYETEDART Number of specific fragments extracted= 1 number of extra gaps= 0 total=24074 # 1d2tA.31.54 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 31 :LLNTD 1d2tA 55 :LRNTE T0287 38 :KK 1d2tA 62 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24076 # 1pu6A.31.59 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (1pu6A)D64 because E (beta_S) conformation "forbidden" or filtered. T0287 31 :LL 1pu6A 60 :IL T0287 34 :T 1pu6A 63 :N T0287 36 :EKKK 1pu6A 65 :DEIN Number of specific fragments extracted= 3 number of extra gaps= 2 total=24079 # 1g73A.31.67 read from T0287.t06.many.frag # found chain 1g73A in template set T0287 31 :LLNTDEKKK 1g73A 68 :KMNSEEEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24080 # 1oi7A.31.269 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 31 :LLNTDEKKK 1oi7A 270 :IPVADTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24081 # 1u7kA.31.61 read from T0287.t06.many.frag # found chain 1u7kA in template set Warning: unaligning (T0287)N33 (1u7kA)T64 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1u7kA 62 :LL T0287 34 :TDEKKK 1u7kA 65 :GEEKQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24083 # 1f74A.31.52 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 31 :LLNTDEKKK 1f74A 53 :MLSTEEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24084 # 1uw4B.31.32 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 31 :LLNTDEKKK 1uw4B 800 :WQDQEVKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24085 # 1vpmA.31.141 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 31 :LLNTDEKKK 1vpmA 130 :EPQTEEEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24086 # 1jalA.31.151 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 31 :LLNTDEKKK 1jalA 152 :KGGDKEAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24087 # 1kicA.31.106 read from T0287.t06.many.frag # found chain 1kicA in training set T0287 31 :LLNTDEKKK 1kicA 95 :ILNIPENVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24088 # 1no4A.31.17 read from T0287.t06.many.frag # found chain 1no4A in template set T0287 31 :LLNTDEKKK 1no4A 19 :ELAQSERTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24089 # 2ahmA.31.43 read from T0287.t06.many.frag # found chain 2ahmA in template set Warning: unaligning (T0287)N33 (2ahmA)L46 because G (3-10) conformation "forbidden" or filtered. T0287 31 :LL 2ahmA 44 :IL T0287 34 :TDEKKK 2ahmA 47 :AKDTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24091 # 1x2iA.31.20 read from T0287.t06.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)L31 (1x2iA)H18 because T (delta_L) conformation "forbidden" or filtered. T0287 32 :LNTDEKKK 1x2iA 19 :VSATLARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24092 # 2cwyA.32.29 read from T0287.t06.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :LNT 2cwyA 30 :KAT T0287 36 :EKKKI 2cwyA 34 :EERRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24094 # 1qqfA.32.27 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 32 :L 1qqfA 1037 :F T0287 35 :DEKKKI 1qqfA 1040 :EKRQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24096 # 1b4fA.32.54 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 32 :LNTDEKKKI 1b4fA 55 :TLAGHQKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24097 # 1cr1A.32.92 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 32 :LNTDEKKKI 1cr1A 363 :RQSDSLKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24098 # 1k3yA.32.110 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 32 :LNT 1k3yA 112 :CPP T0287 37 :KKKI 1k3yA 117 :KDAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24100 # 2d3dA.32.58 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 32 :LNTDEKKKI 2d3dA 494 :LALGARRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24101 # 1w33A.32.118 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 32 :LNTDEKKKI 1w33A 188 :LSQEESKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24102 # 1uptB.32.35 read from T0287.t06.many.frag # found chain 1uptB in training set T0287 32 :LNTDEKKKI 1uptB 2204 :FPDDQTQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24103 # 1u84A.32.41 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 32 :LNTDEKKKI 1u84A 39 :YETEDARTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24104 # 1hynP.32.144 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 32 :LNTDEKKKI 1hynP 145 :IRPQDREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24105 # 1vpmA.32.142 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 32 :LNTDEKKKI 1vpmA 131 :PQTEEEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24106 # 1s2xA.32.46 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 32 :LNTD 1s2xA 40 :KDSN T0287 39 :KI 1s2xA 47 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24108 # 1vflA.32.333 read from T0287.t06.many.frag # found chain 1vflA in template set T0287 32 :LNTDEKKKI 1vflA 332 :LPEDEKKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24109 # 1jalA.32.152 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 32 :LNTDEKKKI 1jalA 153 :GGDKEAKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24110 # 1d2tA.32.55 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 32 :LNTD 1d2tA 56 :RNTE T0287 38 :KKI 1d2tA 62 :KLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24112 # 1g73A.32.68 read from T0287.t06.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :LN 1g73A 69 :MN T0287 35 :DEKKKI 1g73A 72 :EEEDEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24114 # 2ex0A.32.247 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 32 :LNTDEKKKI 2ex0A 272 :GNTDVREYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24115 # 1oi7A.32.270 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 32 :LNTDEKKKI 1oi7A 271 :PVADTIDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24116 # 1u3eM.32.105 read from T0287.t06.many.frag # found chain 1u3eM in template set T0287 32 :LNTDEKKKI 1u3eM 106 :LNVSKAQQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24117 # 1uw4B.32.33 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 32 :LNTDEKKKI 1uw4B 801 :QDQEVKDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24118 # 1ix9A.32.62 read from T0287.t06.many.frag # found chain 1ix9A in training set T0287 32 :LNTDEKKKI 1ix9A 63 :LPADKKTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24119 # 1bo1A.32.251 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 32 :LNTDEKKKI 1bo1A 252 :VGEESKKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24120 # 1e9rA.32.197 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 32 :LNTDEKKKI 1e9rA 268 :AGSNEASKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24121 # 1yrbA.32.183 read from T0287.t06.many.frag # found chain 1yrbA in template set T0287 32 :LNTDEKKKI 1yrbA 170 :LSEEEKERH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24122 # 1u7kA.32.62 read from T0287.t06.many.frag # found chain 1u7kA in template set T0287 32 :LNTDEKKKI 1u7kA 63 :LTGEEKQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24123 # 1xsvA.32.24 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 32 :LNTDEKKKI 1xsvA 22 :LLTNKQRNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24124 # 1szqA.32.450 read from T0287.t06.many.frag # found chain 1szqA in template set T0287 32 :LNTDEKKKI 1szqA 451 :FPTRQQQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24125 # 1orjA.32.43 read from T0287.t06.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)E1045 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKI 1orjA 1046 :LEKRKEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=24126 # 1u20A.32.194 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1u20A 195 :L T0287 34 :TDEKKKI 1u20A 197 :EDQIQEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24128 # 2b0tA.32.111 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 32 :LNTDEKKKI 2b0tA 112 :ATTDEEKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24129 # 2cwyA.33.30 read from T0287.t06.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKII 2cwyA 34 :EERRLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=24131 # 1b4fA.33.55 read from T0287.t06.many.frag # found chain 1b4fA in template set Warning: unaligning (T0287)N33 (1b4fA)L56 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1b4fA 57 :AGHQKKIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24132 # 1qqfA.33.28 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKII 1qqfA 1040 :EKRQEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24133 # 1bo1A.33.252 read from T0287.t06.many.frag # found chain 1bo1A in template set Warning: unaligning (T0287)N33 (1bo1A)G253 because S (epsilon) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1bo1A 254 :EESKKNFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24134 # 1u84A.33.42 read from T0287.t06.many.frag # found chain 1u84A in training set Warning: unaligning (T0287)N33 (1u84A)E40 because G (3-10) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1u84A 41 :TEDARTLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24135 # 1vpmA.33.143 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 33 :NTDEKKKII 1vpmA 132 :QTEEEKRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24136 # 1s2xA.33.47 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 33 :NTD 1s2xA 41 :DSN T0287 39 :KII 1s2xA 47 :DFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24138 # 1w33A.33.119 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 33 :NTDEKKKII 1w33A 189 :SQEESKSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24139 # 2d3dA.33.59 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 33 :NTDEKKKII 2d3dA 495 :ALGARRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24140 # 1cr1A.33.93 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 33 :NTDEKKKII 1cr1A 364 :QSDSLKREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24141 # 1k3yA.33.111 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 33 :NT 1k3yA 113 :PP T0287 37 :KKKII 1k3yA 117 :KDAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24143 # 1uptB.33.36 read from T0287.t06.many.frag # found chain 1uptB in training set T0287 33 :NTDEKKKII 1uptB 2205 :PDDQTQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24144 # 1orjA.33.44 read from T0287.t06.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKII 1orjA 1046 :LEKRKEFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24145 # 1x2iA.33.22 read from T0287.t06.many.frag # found chain 1x2iA in template set T0287 33 :NTDEKKKII 1x2iA 20 :SATLARRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24146 # 1g73A.33.69 read from T0287.t06.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 33 :N 1g73A 70 :N T0287 35 :DEKKKII 1g73A 72 :EEEDEVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=24148 # 1hynP.33.145 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 33 :NTDEKKKII 1hynP 146 :RPQDREELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24149 # 1jfmA.33.131 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 33 :NTDEKKKII 1jfmA 132 :ANDESGVIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24150 # 1jalA.33.153 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 33 :NTDEKKKII 1jalA 154 :GDKEAKFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24151 # 1uw4B.33.34 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 33 :NTDEKKKII 1uw4B 802 :DQEVKDYVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24152 # 1szqA.33.451 read from T0287.t06.many.frag # found chain 1szqA in template set Warning: unaligning (T0287)N33 (1szqA)P452 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1szqA 453 :TRQQQRIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24153 # 1zroA.33.416 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 33 :NTDEKKKII 1zroA 417 :NDLSNRKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24154 # 1y0nA.33.10 read from T0287.t06.many.frag # found chain 1y0nA in template set T0287 33 :NTDEKKKII 1y0nA 9 :EADTLNNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24155 # 2ex0A.33.248 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 33 :NTDEKKKII 2ex0A 273 :NTDVREYYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24156 # 1u7kA.33.63 read from T0287.t06.many.frag # found chain 1u7kA in template set T0287 33 :NTDEKKKII 1u7kA 64 :TGEEKQRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24157 # 1ct5A.33.6 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 33 :NTDEKKKII 1ct5A 8 :DEDRKTQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24158 # 1oi7A.33.271 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 33 :NTDEKKKII 1oi7A 272 :VADTIDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24159 # 1ykhA.33.42 read from T0287.t06.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1ykhA)P141 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKII 1ykhA 142 :DMYERKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24160 # 1vflA.33.334 read from T0287.t06.many.frag # found chain 1vflA in template set T0287 33 :NTDEKKKII 1vflA 333 :PEDEKKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24161 # 1usyA.33.142 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 33 :NTDEKKKII 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24162 # 1d2tA.33.56 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 33 :NTD 1d2tA 57 :NTE T0287 38 :KKII 1d2tA 62 :KLAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24164 # 2cwyA.34.31 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 34 :TDEKKKIID 2cwyA 32 :TGEERRLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24165 # 1s2xA.34.48 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 34 :TD 1s2xA 42 :SN T0287 39 :KIID 1s2xA 47 :DFLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24167 # 1b4fA.34.56 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 34 :TDEKKKIID 1b4fA 57 :AGHQKKILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24168 # 1bo1A.34.253 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 34 :TDEKKKIID 1bo1A 254 :EESKKNFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24169 # 1qqfA.34.29 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKIID 1qqfA 1040 :EKRQEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24170 # 1vpmA.34.144 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 34 :TDEKKKIID 1vpmA 133 :TEEEKRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24171 # 1w33A.34.120 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 34 :TDEKKKIID 1w33A 190 :QEESKSLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24172 # 1u84A.34.43 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 34 :TDEKKKIID 1u84A 41 :TEDARTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24173 # 1jfmA.34.132 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 34 :TDEKKKIID 1jfmA 133 :NDESGVIMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24174 # 1orjA.34.45 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 34 :TDEKKKIID 1orjA 1046 :LEKRKEFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24175 # 2d3dA.34.60 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 34 :TDEKKKIID 2d3dA 496 :LGARRKLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24176 # 1qgoA.34.86 read from T0287.t06.many.frag # found chain 1qgoA in template set T0287 34 :TDEKKKIID 1qgoA 87 :GDEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24177 # 1oi7A.34.272 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 34 :TDEKKKIID 1oi7A 273 :ADTIDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24178 # 1vliA.34.265 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 34 :TDEKKKIID 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24179 # 1cr1A.34.94 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 34 :TDEKKKIID 1cr1A 365 :SDSLKREII Number of specific fragments extracted= 1 number of extra gaps= 0 total=24180 # 1ct5A.34.7 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 34 :TDEKKKIID 1ct5A 9 :EDRKTQLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24181 # 1yvrA.34.237 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 34 :TDEKKKIID 1yvrA 238 :TKDELEIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24182 # 1g73A.34.70 read from T0287.t06.many.frag # found chain 1g73A in template set T0287 34 :TDEKKKIID 1g73A 71 :SEEEDEVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24183 # 3fapB.34.22 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E36 (3fapB)N132 because N (gamma') conformation "forbidden" or filtered. T0287 34 :T 3fapB 130 :E T0287 37 :KKKIID 3fapB 133 :VKGMFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24185 # 1i60A.34.75 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 34 :TDEKKKIID 1i60A 76 :EKGHNEIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24186 # 1y0nA.34.11 read from T0287.t06.many.frag # found chain 1y0nA in template set T0287 34 :TDEKKKIID 1y0nA 10 :ADTLNNLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24187 # 2jdxA.34.79 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 34 :TDEKKKIID 2jdxA 117 :KDHLKKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24188 # 1zroA.34.417 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 34 :TDEKKKIID 1zroA 418 :DLSNRKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24189 # 1x2iA.34.23 read from T0287.t06.many.frag # found chain 1x2iA in template set T0287 34 :TDEKKKIID 1x2iA 21 :ATLARRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24190 # 1j5sA.34.216 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 34 :TDEKKKIID 1j5sA 205 :TSTLDGFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24191 # 1fzcA.34.27 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 34 :TDEKKKIID 1fzcA 138 :KNVRAQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24192 # 1ykhA.34.43 read from T0287.t06.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKIID 1ykhA 142 :DMYERKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24193 # 2c5rA.34.35 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 34 :TDE 2c5rA 98 :LQS T0287 39 :KIID 2c5rA 103 :EVLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24195 # 2f6kA.34.62 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 34 :TDEKKKIID 2f6kA 63 :FGDKAETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24196 # 1y8aA.34.189 read from T0287.t06.many.frag # found chain 1y8aA in training set T0287 34 :TDEKKKIID 1y8aA 168 :RSEVRKIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24197 # 2cwyA.35.32 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 35 :DEKKKIIDQ 2cwyA 33 :GEERRLLQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24198 # 1b4fA.35.57 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 35 :DEKKKIIDQ 1b4fA 58 :GHQKKILNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24199 # 1s2xA.35.49 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 35 :DE 1s2xA 43 :ND T0287 39 :KIIDQ 1s2xA 47 :DFLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24201 # 1bo1A.35.254 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 35 :DEKKKIIDQ 1bo1A 255 :ESKKNFLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24202 # 1w33A.35.121 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 35 :DEKKKIIDQ 1w33A 191 :EESKSLLMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24203 # 1jfmA.35.133 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 35 :DEKKKIIDQ 1jfmA 134 :DESGVIMNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24204 # 1qqfA.35.30 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 35 :DEKKKIIDQ 1qqfA 1040 :EKRQEALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24205 # 1qgoA.35.87 read from T0287.t06.many.frag # found chain 1qgoA in template set T0287 35 :DEKKKIIDQ 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24206 # 2d3dA.35.61 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 35 :DEKKKIIDQ 2d3dA 497 :GARRKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24207 # 1vliA.35.266 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 35 :DEKKKIIDQ 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24208 # 1u84A.35.44 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 35 :DEKKKIIDQ 1u84A 42 :EDARTLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24209 # 1orjA.35.46 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 35 :DEKKKIIDQ 1orjA 1047 :EKRKEFVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24210 # 1oi7A.35.273 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 35 :DEKKKIIDQ 1oi7A 274 :DTIDEIVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24211 # 1i60A.35.76 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 35 :DEKKKIIDQ 1i60A 77 :KGHNEIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24212 # 1vpmA.35.145 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 35 :DEKKKIIDQ 1vpmA 134 :EEEKRLYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=24213 # 3fapB.35.23 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24214 # 1yvrA.35.238 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 35 :DEKKKIIDQ 1yvrA 239 :KDELEIIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24215 # 2c5rA.35.36 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 35 :DE 2c5rA 99 :QS T0287 39 :KIIDQ 2c5rA 103 :EVLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24217 # 2jdxA.35.80 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 35 :DEKKKIIDQ 2jdxA 118 :DHLKKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24218 # 1fviA.35.102 read from T0287.t06.many.frag # found chain 1fviA in template set T0287 35 :DEKKKIIDQ 1fviA 104 :DPLKKYIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24219 # 1ct5A.35.8 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 35 :DEKKKIIDQ 1ct5A 10 :DRKTQLIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24220 # 1zroA.35.418 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 35 :DEKKKIIDQ 1zroA 419 :LSNRKLVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24221 # 1j5sA.35.217 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 35 :DEKKKIIDQ 1j5sA 206 :STLDGFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24222 # 1fzcA.35.28 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 35 :DEKKKIIDQ 1fzcA 139 :NVRAQLVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24223 # 1p4xA.35.98 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 35 :DEKKKIIDQ 1p4xA 99 :EQREKIAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24224 # 1qf5A.35.180 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 35 :DEKKKIIDQ 1qf5A 181 :VDYQKVLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24225 # 1x2iA.35.24 read from T0287.t06.many.frag # found chain 1x2iA in template set T0287 35 :DEKKKIIDQ 1x2iA 22 :TLARRLLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24226 # 1w2yA.35.123 read from T0287.t06.many.frag # found chain 1w2yA in training set T0287 35 :DEKKKIIDQ 1w2yA 124 :GDIYGILND Number of specific fragments extracted= 1 number of extra gaps= 0 total=24227 # 256bA.35.20 read from T0287.t06.many.frag # found chain 256bA in training set T0287 35 :DEKKKIIDQ 256bA 21 :DNAAQVKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24228 # 1g73A.35.71 read from T0287.t06.many.frag # found chain 1g73A in template set T0287 35 :DEKKKIIDQ 1g73A 72 :EEEDEVWQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24229 # 1b4fA.36.58 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 36 :EKKKIIDQI 1b4fA 59 :HQKKILNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24230 # 2cwyA.36.33 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 36 :EKKKIIDQI 2cwyA 34 :EERRLLQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24231 # 1s2xA.36.50 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQI 1s2xA 47 :DFLRRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24232 # 1w33A.36.122 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 36 :EKKKIIDQI 1w33A 192 :ESKSLLMQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24233 # 1vliA.36.267 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 36 :EKKKIIDQI 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24234 # 1bo1A.36.255 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 36 :EKKKIIDQI 1bo1A 256 :SKKNFLEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24235 # 1qqfA.36.31 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 36 :EKKKIIDQI 1qqfA 1041 :KRQEALELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24236 # 1qgoA.36.88 read from T0287.t06.many.frag # found chain 1qgoA in template set T0287 36 :EKKKIIDQI 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24237 # 3fapB.36.24 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24238 # 1jfmA.36.134 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 36 :EKKKIIDQI 1jfmA 135 :ESGVIMNKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24239 # 1oi7A.36.274 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 36 :EKKKIIDQI 1oi7A 275 :TIDEIVELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24240 # 1i60A.36.77 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 36 :EKKKIIDQI 1i60A 78 :GHNEIITEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24241 # 1qf5A.36.181 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 36 :EKKKIIDQI 1qf5A 182 :DYQKVLDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24242 # 1yvrA.36.239 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 36 :EKKKIIDQI 1yvrA 240 :DELEIIHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24243 # 1fviA.36.103 read from T0287.t06.many.frag # found chain 1fviA in template set T0287 36 :EKKKIIDQI 1fviA 105 :PLKKYIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24244 # 1j5sA.36.218 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 36 :EKKKIIDQI 1j5sA 207 :TLDGFLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24245 # 2d3dA.36.62 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 36 :EKKKIIDQI 2d3dA 498 :ARRKLLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24246 # 1vpmA.36.146 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 36 :EKKKIIDQI 1vpmA 135 :EEKRLYETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24247 # 1zroA.36.419 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 36 :EKKKIIDQI 1zroA 420 :SNRKLVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24248 # 1w2yA.36.124 read from T0287.t06.many.frag # found chain 1w2yA in training set T0287 36 :EKKKIIDQI 1w2yA 125 :DIYGILNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24249 # 2jdxA.36.81 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 36 :EKKKIIDQI 2jdxA 119 :HLKKAVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24250 # 2c5rA.36.37 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)E36 (2c5rA)S100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQI 2c5rA 103 :EVLNYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24251 # 1u84A.36.45 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 36 :EKKKIIDQI 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24252 # 1y8aA.36.191 read from T0287.t06.many.frag # found chain 1y8aA in training set T0287 36 :EKKKIIDQI 1y8aA 170 :EVRKIVESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24253 # 1fzcA.36.29 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 36 :EKKKIIDQI 1fzcA 140 :VRAQLVDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24254 # 1orjA.36.47 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 36 :EKKKIIDQI 1orjA 1048 :KRKEFVENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24255 # 1nekA.36.478 read from T0287.t06.many.frag # found chain 1nekA in template set T0287 36 :EKKKIIDQI 1nekA 479 :AMAKGLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24256 # 1ct5A.36.9 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 36 :EKKKIIDQI 1ct5A 11 :RKTQLIAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24257 # 1bkrA.36.90 read from T0287.t06.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)E36 (1bkrA)D91 because P (beta_P) conformation "forbidden" or filtered. T0287 37 :KKKIIDQI 1bkrA 92 :EKSIITYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24258 # 1go3F.36.50 read from T0287.t06.many.frag # found chain 1go3F in training set T0287 36 :EKKKIIDQI 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24259 # 1b4fA.37.59 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 37 :KKKIIDQIK 1b4fA 60 :QKKILNSIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24260 # 1w33A.37.123 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 37 :KKKIIDQIK 1w33A 193 :SKSLLMQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24261 # 1s2xA.37.51 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIK 1s2xA 47 :DFLRRVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24262 # 2cwyA.37.34 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 37 :KKKIIDQIK 2cwyA 35 :ERRLLQGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24263 # 1vliA.37.268 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 37 :KKKIIDQIK 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24264 # 3fapB.37.25 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 T0287 37 :KKKIIDQ 3fapB 133 :VKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24265 # 1i60A.37.78 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 37 :KKKIIDQIK 1i60A 79 :HNEIITEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24266 # 1bo1A.37.256 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 37 :KKKIIDQIK 1bo1A 257 :KKNFLEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24267 # 1qf5A.37.182 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 37 :KKKIIDQIK 1qf5A 183 :YQKVLDDTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24268 # 1jfmA.37.135 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 37 :KKKIIDQIK 1jfmA 136 :SGVIMNKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24269 # 2c5rA.37.38 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIK 2c5rA 103 :EVLNYIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24270 # 1qgoA.37.89 read from T0287.t06.many.frag # found chain 1qgoA in template set T0287 37 :KKKIIDQIK 1qgoA 90 :YEKIVREVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24271 # 1j5sA.37.219 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 37 :KKKIIDQIK 1j5sA 208 :LDGFLNALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24272 # 1qqfA.37.32 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 37 :KKKIIDQIK 1qqfA 1042 :RQEALELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24273 # 1fzcA.37.30 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 37 :KKKIIDQIK 1fzcA 141 :RAQLVDMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24274 # 1fviA.37.104 read from T0287.t06.many.frag # found chain 1fviA in template set T0287 37 :KKKIIDQIK 1fviA 106 :LKKYIDRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24275 # 256bA.37.22 read from T0287.t06.many.frag # found chain 256bA in training set T0287 37 :KKKIIDQIK 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24276 # 1hx1B.37.19 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 37 :KKKIIDQIK 1hx1B 169 :VEKIADQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24277 # 2d3dA.37.63 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 37 :KKKIIDQIK 2d3dA 499 :RRKLLKAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24278 # 1w2yA.37.125 read from T0287.t06.many.frag # found chain 1w2yA in training set T0287 37 :KKKIIDQIK 1w2yA 126 :IYGILNDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24279 # 1nekA.37.479 read from T0287.t06.many.frag # found chain 1nekA in template set T0287 37 :KKKIIDQIK 1nekA 480 :MAKGLEQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24280 # 2jdxA.37.82 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 37 :KKKIIDQIK 2jdxA 120 :LKKAVAEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24281 # 1qoyA.37.180 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 37 :KKKIIDQIK 1qoyA 166 :FQSQVDKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24282 # 1orjA.37.48 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 37 :KKKIIDQIK 1orjA 1049 :RKEFVENID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24283 # 1nt2B.37.73 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 37 :KKKIIDQIK 1nt2B 85 :DRYVVALVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24284 # 1p4xA.37.100 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 37 :KKKIIDQIK 1p4xA 101 :REKIAERVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24285 # 1bkrA.37.91 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 37 :KKKIIDQIK 1bkrA 92 :EKSIITYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24286 # 1zroA.37.420 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 37 :KKKIIDQIK 1zroA 421 :NRKLVGKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24287 # 1oi7A.37.275 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 37 :KKKIIDQIK 1oi7A 276 :IDEIVELVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24288 # 1yvrA.37.240 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 37 :KKKIIDQIK 1yvrA 241 :ELEIIHLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24289 # 1b4fA.38.60 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 38 :KKIIDQIKT 1b4fA 61 :KKILNSIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24290 # 1w33A.38.124 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 38 :KKIIDQIKT 1w33A 194 :KSLLMQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24291 # 1i60A.38.79 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 38 :KKIIDQIKT 1i60A 80 :NEIITEFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24292 # 1s2xA.38.52 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIKT 1s2xA 47 :DFLRRVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24293 # 1qf5A.38.183 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 38 :KKIIDQIKT 1qf5A 184 :QKVLDDTMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24294 # 3fapB.38.26 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 T0287 38 :KKIIDQ 3fapB 134 :KGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24295 # 2cwyA.38.35 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 38 :KKIIDQIKT 2cwyA 36 :RRLLQGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24296 # 1vliA.38.269 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 38 :KKIIDQIKT 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24297 # 1hx1B.38.20 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 38 :KKIIDQIKT 1hx1B 170 :EKIADQLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24298 # 2c5rA.38.39 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIKT 2c5rA 103 :EVLNYIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=24299 # 1jfmA.38.136 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 38 :KKIIDQIKT 1jfmA 137 :GVIMNKWKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24300 # 1bo1A.38.257 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 38 :KKIIDQIKT 1bo1A 258 :KNFLEKLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24301 # 256bA.38.23 read from T0287.t06.many.frag # found chain 256bA in training set T0287 38 :KKIIDQIKT 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24302 # 1nt2B.38.74 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 38 :KKIIDQIKT 1nt2B 86 :RYVVALVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24303 # 1nekA.38.480 read from T0287.t06.many.frag # found chain 1nekA in template set T0287 38 :KKIIDQIKT 1nekA 481 :AKGLEQLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24304 # 1qqfA.38.33 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 38 :KKIIDQIKT 1qqfA 1043 :QEALELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24305 # 1fzcA.38.31 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 38 :KKIIDQIKT 1fzcA 142 :AQLVDMKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24306 # 1j5sA.38.220 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 38 :KKIIDQIKT 1j5sA 209 :DGFLNALWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24307 # 1r7jA.38.63 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 38 :KKIIDQIKT 1r7jA 64 :EELLEDIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24308 # 1ofcX.38.165 read from T0287.t06.many.frag # found chain 1ofcX in template set T0287 38 :KKIIDQIKT 1ofcX 853 :ERIMGQIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24309 # 1qoyA.38.181 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 38 :KKIIDQIKT 1qoyA 167 :QSQVDKIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24310 # 1ct5A.38.11 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 38 :KKIIDQIKT 1ct5A 13 :TQLIAQYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=24311 # 1bkrA.38.92 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 38 :KKIIDQIKT 1bkrA 93 :KSIITYVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24312 # 1e6iA.38.71 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 38 :KKIIDQIKT 1e6iA 390 :EDFIYDARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24313 # 1jqnA.38.28 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 38 :KKIIDQIKT 1jqnA 29 :EHILERVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=24314 # 1td6A.38.53 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 38 :KKIIDQIKT 1td6A 42 :TFFLHQFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24315 # 1fi4A.38.298 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 38 :KKIIDQIKT 1fi4A 279 :KRIISWCHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24316 # 1fviA.38.105 read from T0287.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0287)K38 (1fviA)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 39 :KIIDQIKT 1fviA 108 :KYIDRVED Number of specific fragments extracted= 1 number of extra gaps= 1 total=24317 # 1p4xA.38.101 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 38 :KKIIDQIKT 1p4xA 102 :EKIAERVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24318 # 1vls.38.56 read from T0287.t06.many.frag # found chain 1vls in template set T0287 38 :KKIIDQIKT 1vls 91 :QNAKTTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24319 # 1b4fA.39.61 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 39 :KIIDQIKTM 1b4fA 62 :KILNSIQVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24320 # 1i60A.39.80 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 39 :KIIDQIKTM 1i60A 81 :EIITEFKGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24321 # 3fapB.39.27 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 39 :KIIDQ 3fapB 135 :GMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24322 # 1s2xA.39.53 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 39 :KIIDQIKTM 1s2xA 47 :DFLRRVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24323 # 2c5rA.39.40 read from T0287.t06.many.frag # found chain 2c5rA in template set T0287 39 :KIIDQIKTM 2c5rA 103 :EVLNYIETQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24324 # 1w33A.39.125 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 39 :KIIDQIKTM 1w33A 195 :SLLMQIKSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24325 # 256bA.39.24 read from T0287.t06.many.frag # found chain 256bA in training set T0287 39 :KIIDQIKTM 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24326 # 1hx1B.39.21 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 39 :KIIDQIKTM 1hx1B 171 :KIADQLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24327 # 1vliA.39.270 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 39 :KIIDQIKTM 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24328 # 1qf5A.39.184 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 39 :KIIDQIKTM 1qf5A 185 :KVLDDTMAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24329 # 1nt2B.39.75 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 39 :KIIDQIKTM 1nt2B 87 :YVVALVKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24330 # 1bo1A.39.258 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 39 :KIIDQIKTM 1bo1A 259 :NFLEKLKRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24331 # 1jqnA.39.29 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 39 :KIIDQIKTM 1jqnA 30 :HILERVETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24332 # 1td6A.39.54 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 39 :KIIDQIKTM 1td6A 43 :FFLHQFDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24333 # 1ofcX.39.166 read from T0287.t06.many.frag # found chain 1ofcX in template set T0287 39 :KIIDQIKTM 1ofcX 854 :RIMGQIERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24334 # 1e6iA.39.72 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 39 :KIIDQIKTM 1e6iA 391 :DFIYDARLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24335 # 1j5sA.39.221 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 39 :KIIDQIKTM 1j5sA 210 :GFLNALWKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24336 # 2jdxA.39.84 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 39 :KIIDQIKTM 2jdxA 122 :KAVAEIEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24337 # 1ct5A.39.12 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 39 :KIIDQIKTM 1ct5A 14 :QLIAQYESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24338 # 1jfmA.39.137 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 39 :KIIDQIKTM 1jfmA 138 :VIMNKWKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24339 # 2cwyA.39.36 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 39 :KIIDQIKTM 2cwyA 37 :RLLQGVILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24340 # 1qqfA.39.34 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 39 :KIIDQIKTM 1qqfA 1044 :EALELIKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24341 # 1gw5S.39.78 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 39 :KIIDQIKTM 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24342 # 1bkrA.39.93 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 39 :KIIDQIKTM 1bkrA 94 :SIITYVVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24343 # 1orjA.39.50 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 39 :KIIDQIKTM 1orjA 1051 :EFVENIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24344 # 1fviA.39.106 read from T0287.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0287)K39 (1fviA)K108 because P (beta_P) conformation "forbidden" or filtered. T0287 40 :IIDQIKTM 1fviA 109 :YIDRVEDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=24345 # 1r7jA.39.64 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 39 :KIIDQIKTM 1r7jA 65 :ELLEDIRKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24346 # 1p4xA.39.102 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 39 :KIIDQIKTM 1p4xA 103 :KIAERVTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24347 # 1vls.39.57 read from T0287.t06.many.frag # found chain 1vls in template set T0287 39 :KIIDQIKTM 1vls 92 :NAKTTLAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24348 # 1h05A.39.56 read from T0287.t06.many.frag # found chain 1h05A in training set T0287 39 :KIIDQIKTM 1h05A 57 :QLLDWIHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24349 # 1i60A.40.81 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 40 :IIDQIKTMH 1i60A 82 :IITEFKGMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24350 # 1b4fA.40.62 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 40 :IIDQIKTMH 1b4fA 63 :ILNSIQVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24351 # 3fapB.40.28 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 40 :IIDQ 3fapB 136 :MFEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=24353 # 2c5rA.40.41 read from T0287.t06.many.frag # found chain 2c5rA in template set T0287 40 :IIDQIKTMH 2c5rA 104 :VLNYIETQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24354 # 256bA.40.25 read from T0287.t06.many.frag # found chain 256bA in training set T0287 40 :IIDQIKTMH 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24355 # 1nt2B.40.76 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 40 :IIDQIKTMH 1nt2B 88 :VVALVKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24356 # 1w33A.40.126 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 40 :IIDQIKTMH 1w33A 196 :LLMQIKSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24357 # 1s2xA.40.54 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 40 :IIDQIKTMH 1s2xA 48 :FLRRVQELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24358 # 1jqnA.40.30 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 40 :IIDQIKTMH 1jqnA 31 :ILERVETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24359 # 1hx1B.40.22 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 40 :IIDQIKTMH 1hx1B 172 :IADQLEELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24360 # 1e6iA.40.73 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 40 :IIDQIKTMH 1e6iA 392 :FIYDARLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24361 # 1td6A.40.55 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 40 :IIDQIKTMH 1td6A 44 :FLHQFDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24362 # 1gw5S.40.79 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 40 :IIDQIKTMH 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24363 # 1ofcX.40.167 read from T0287.t06.many.frag # found chain 1ofcX in template set T0287 40 :IIDQIKTMH 1ofcX 855 :IMGQIERGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24364 # 1orjA.40.51 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 40 :IIDQIKTMH 1orjA 1052 :FVENIDRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24365 # 1vls.40.58 read from T0287.t06.many.frag # found chain 1vls in template set T0287 40 :IIDQIKTMH 1vls 93 :AKTTLAQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24366 # 1qf5A.40.185 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 40 :IIDQIKTMH 1qf5A 186 :VLDDTMAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24367 # 1vliA.40.271 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 40 :IIDQIKTMH 1vliA 260 :MVDGIRKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24368 # 1j5sA.40.222 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 40 :IIDQIKTMH 1j5sA 211 :FLNALWKSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24369 # 1bo1A.40.259 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 40 :IIDQIKTMH 1bo1A 260 :FLEKLKRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24370 # 1xlyA.40.49 read from T0287.t06.many.frag # found chain 1xlyA in template set T0287 40 :IIDQIKTMH 1xlyA 55 :LIKFVKKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24371 # 1bkrA.40.94 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 40 :IIDQIKTMH 1bkrA 95 :IITYVVTYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24372 # 1gqiA.40.614 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 40 :IIDQIKTMH 1gqiA 619 :GVEQVRAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24373 # 1nekA.40.482 read from T0287.t06.many.frag # found chain 1nekA in template set T0287 40 :IIDQIKTMH 1nekA 483 :GLEQLKVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24374 # 1p4xA.40.103 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 40 :IIDQIKTMH 1p4xA 104 :IAERVTLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24375 # 1ct5A.40.13 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 40 :IIDQIKTMH 1ct5A 15 :LIAQYESVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24376 # 2jdxA.40.85 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 40 :IIDQIKTMH 2jdxA 123 :AVAEIEEMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24377 # 1v74B.40.43 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 40 :IIDQIKTMH 1v74B 44 :ILNCGEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24378 # 1hulA.40.63 read from T0287.t06.many.frag # found chain 1hulA in template set Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1hulA)L72 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1hulA)L72 T0287 40 :IID 1hulA 68 :LFK T0287 45 :KTMH 1hulA 73 :SLIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24380 # 2cwyA.40.37 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 40 :IIDQIKTMH 2cwyA 38 :LLQGVILLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24381 # 1i60A.41.82 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 41 :IDQIKTMHD 1i60A 83 :ITEFKGMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=24382 # 1b4fA.41.63 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 41 :IDQIKTMHD 1b4fA 64 :LNSIQVMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24383 # 2c5rA.41.42 read from T0287.t06.many.frag # found chain 2c5rA in template set T0287 41 :IDQIKTMHD 2c5rA 105 :LNYIETQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24384 # 3fapB.41.29 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 T0287 41 :IDQ 3fapB 137 :FEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=24386 # 1jqnA.41.31 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 41 :IDQIKTMHD 1jqnA 32 :LERVETIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24387 # 256bA.41.26 read from T0287.t06.many.frag # found chain 256bA in training set T0287 41 :IDQIKTMHD 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24388 # 1nt2B.41.77 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 41 :IDQIKTMHD 1nt2B 89 :VALVKALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24389 # 1s2xA.41.55 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 41 :IDQIKTMHD 1s2xA 49 :LRRVQELRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24390 # 1hx1B.41.23 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 41 :IDQIKTMHD 1hx1B 173 :ADQLEELNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24391 # 1bf5A.41.7 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 41 :IDQIKTMHD 1bf5A 143 :DSKVRNVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24392 # 1w33A.41.127 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 41 :IDQIKTMHD 1w33A 197 :LMQIKSNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24393 # 1gqiA.41.615 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 41 :IDQIKTMHD 1gqiA 620 :VEQVRAMQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24394 # 1e6iA.41.74 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 41 :IDQIKTMHD 1e6iA 393 :IYDARLVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24395 # 1td6A.41.56 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 41 :IDQIKTMHD 1td6A 45 :LHQFDKVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=24396 # 1ct5A.41.14 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 41 :IDQIKTMHD 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24397 # 1xlyA.41.50 read from T0287.t06.many.frag # found chain 1xlyA in template set T0287 41 :IDQIKTMHD 1xlyA 56 :IKFVKKLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24398 # 1gw5S.41.80 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 41 :IDQIKTMHD 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24399 # 2jdxA.41.86 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 41 :IDQIKTMHD 2jdxA 124 :VAEIEEMCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24400 # 1orjA.41.52 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 41 :IDQIKTMHD 1orjA 1053 :VENIDRVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24401 # 1bo1A.41.260 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 41 :IDQIKTMHD 1bo1A 261 :LEKLKRDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24402 # 1vls.41.59 read from T0287.t06.many.frag # found chain 1vls in template set T0287 41 :IDQIKTMHD 1vls 94 :KTTLAQAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24403 # 1vdkA.41.204 read from T0287.t06.many.frag # found chain 1vdkA in training set T0287 41 :IDQIKTMHD 1vdkA 205 :AAQLKTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24404 # 1yvhA.41.62 read from T0287.t06.many.frag # found chain 1yvhA in template set T0287 41 :IDQIKTMHD 1yvhA 85 :LDLLPDTYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24405 # 1qf5A.41.186 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 41 :IDQIKTMHD 1qf5A 187 :LDDTMAVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24406 # 1bgf.41.80 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 41 :IDQIKTMHD 1bgf 80 :IHNLKRIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24407 # 1ofcX.41.168 read from T0287.t06.many.frag # found chain 1ofcX in template set T0287 41 :IDQIKTMHD 1ofcX 856 :MGQIERGEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24408 # 1v74B.41.44 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 41 :IDQIKTMHD 1v74B 45 :LNCGEELFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24409 # 1vliA.41.272 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 41 :IDQIKTMHD 1vliA 261 :VDGIRKTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24410 # 1j5sA.41.223 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 41 :IDQIKTMHD 1j5sA 212 :LNALWKSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24411 # 2f6lA.41.40 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 41 :IDQIKTMHD 2f6lA 74 :EQQLAKLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24412 # 1i60A.42.83 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 42 :DQIKTMHDF 1i60A 84 :TEFKGMMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=24413 # 1b4fA.42.64 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 42 :DQIKTMHDF 1b4fA 65 :NSIQVMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24414 # 1nt2B.42.78 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 42 :DQIKTMHDF 1nt2B 90 :ALVKALEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24415 # 1jqnA.42.32 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 42 :DQIKTMHDF 1jqnA 33 :ERVETIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24416 # 3fapB.42.30 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 42 :DQ 3fapB 138 :EV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=24418 # 1bf5A.42.8 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 42 :DQIKTMHDF 1bf5A 144 :SKVRNVKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24419 # 2c5rA.42.43 read from T0287.t06.many.frag # found chain 2c5rA in template set T0287 42 :DQIKTMHDF 2c5rA 106 :NYIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24420 # 256bA.42.27 read from T0287.t06.many.frag # found chain 256bA in training set T0287 42 :DQIKTMHDF 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24421 # 1gqiA.42.616 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 42 :DQIKTMHDF 1gqiA 621 :EQVRAMQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24422 # 1e6iA.42.75 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 42 :DQIKTMHDF 1e6iA 394 :YDARLVFNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24423 # 1s2xA.42.56 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 42 :DQIKTMHDF 1s2xA 50 :RRVQELRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24424 # 1hx1B.42.24 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 42 :DQIKTMHDF 1hx1B 174 :DQLEELNKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24425 # 1xlyA.42.51 read from T0287.t06.many.frag # found chain 1xlyA in template set T0287 42 :DQIKTMHDF 1xlyA 57 :KFVKKLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24426 # 1orjA.42.53 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 42 :DQIKTMHDF 1orjA 1054 :ENIDRVYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24427 # 1td6A.42.57 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 42 :DQIKTMHDF 1td6A 46 :HQFDKVMEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24428 # 2f6lA.42.41 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 42 :DQIKTMHDF 2f6lA 75 :QQLAKLGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=24429 # 1zupA.42.285 read from T0287.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE at template residue (1zupA)L274 T0287 43 :QIKTMHDF 1zupA 275 :PIQFLEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24430 # 1v74B.42.45 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 42 :DQIKTMHDF 1v74B 46 :NCGEELFMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24431 # 1ct5A.42.15 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 42 :DQIKTMHDF 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24432 # 1vdkA.42.205 read from T0287.t06.many.frag # found chain 1vdkA in training set T0287 42 :DQIKTMHDF 1vdkA 206 :AQLKTTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24433 # 1gw5S.42.81 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 42 :DQIKTMHDF 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24434 # 1fjgT.42.53 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 42 :DQIKTMHDF 1fjgT 54 :KIMRKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24435 # 1nogA.42.29 read from T0287.t06.many.frag # found chain 1nogA in training set T0287 42 :DQIKTMHDF 1nogA 30 :GTIDELNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24436 # 1u0fA.42.219 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 42 :DQIKTMHDF 1u0fA 219 :TNAETAKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24437 # 1w33A.42.128 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 42 :DQIKTMHDF 1w33A 198 :MQIKSNLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24438 # 1kkoA.42.212 read from T0287.t06.many.frag # found chain 1kkoA in training set T0287 42 :DQIKTMHDF 1kkoA 213 :EYVRWLSDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24439 # 1alu.42.118 read from T0287.t06.many.frag # found chain 1alu in template set T0287 42 :DQIKTMHDF 1alu 117 :MSTKVLIQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24440 # 1moq.42.194 read from T0287.t06.many.frag # found chain 1moq in training set T0287 42 :DQIKTMHDF 1moq 435 :HGLQALPSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24441 # 1ail.42.37 read from T0287.t06.many.frag # found chain 1ail in template set T0287 42 :DQIKTMHDF 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24442 # 2acvA.42.430 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 42 :DQIKTMHDF 2acvA 431 :KKVQEMKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24443 # 1i60A.43.84 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 43 :QIKTMHDFF 1i60A 85 :EFKGMMETC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24444 # 1nt2B.43.79 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 43 :QIKTMHDFF 1nt2B 91 :LVKALEEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24445 # 1jqnA.43.33 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 43 :QIKTMHDFF 1jqnA 34 :RVETIRKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24446 # 2c5rA.43.44 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 T0287 43 :QIKTMHDF 2c5rA 107 :YIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=24447 # 3fapB.43.31 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 43 :Q 3fapB 139 :V T0287 48 :H 3fapB 144 :H T0287 51 :F 3fapB 147 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=24450 # 1e6iA.43.76 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 43 :QIKTMHDFF 1e6iA 395 :DARLVFNNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24451 # 1gqiA.43.617 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 43 :QIKTMHDFF 1gqiA 622 :QVRAMQRTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24452 # 1bf5A.43.9 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 43 :QIKTMHDFF 1bf5A 145 :KVRNVKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24453 # 1hx1B.43.25 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 43 :QIKTMHDFF 1hx1B 175 :QLEELNKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24454 # 1b4fA.43.65 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 43 :QIKTMHDFF 1b4fA 66 :SIQVMRAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24455 # 256bA.43.28 read from T0287.t06.many.frag # found chain 256bA in training set T0287 43 :QIKTMHDFF 256bA 29 :ALTKMRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24456 # 1vdkA.43.206 read from T0287.t06.many.frag # found chain 1vdkA in training set T0287 43 :QIKTMHDFF 1vdkA 207 :QLKTTLAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24457 # 1moq.43.195 read from T0287.t06.many.frag # found chain 1moq in training set T0287 43 :QIKTMHDFF 1moq 436 :GLQALPSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24458 # 1s2xA.43.57 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 43 :QIKTMHDFF 1s2xA 51 :RVQELRINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24459 # 1zupA.43.286 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 43 :QIKTMHDFF 1zupA 275 :PIQFLEENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24460 # 1n1fA.43.117 read from T0287.t06.many.frag # found chain 1n1fA in template set T0287 43 :QIKTMHDFF 1n1fA 118 :ATRVIHDNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24461 # 2acvA.43.431 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 43 :QIKTMHDFF 2acvA 432 :KVQEMKEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24462 # 1orjA.43.54 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 43 :QIKTMHDFF 1orjA 1055 :NIDRVYDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=24463 # 2ahmA.43.13 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 43 :QIKTMHDFF 2ahmA 14 :TSVVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24464 # 1u0fA.43.220 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 43 :QIKTMHDFF 1u0fA 220 :NAETAKEWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24465 # 1ail.43.38 read from T0287.t06.many.frag # found chain 1ail in template set T0287 43 :QIKTMHDFF 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24466 # 1fjgT.43.54 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 43 :QIKTMHDFF 1fjgT 55 :IMRKAESLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24467 # 1ct5A.43.16 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 43 :QIKTMHDFF 1ct5A 18 :QYESVREVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24468 # 2etsA.43.22 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 43 :QIKTMHDFF 2etsA 11 :EVNNMQQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24469 # 1xlyA.43.52 read from T0287.t06.many.frag # found chain 1xlyA in template set T0287 43 :QIKTMHDFF 1xlyA 58 :FVKKLRFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24470 # 1nogA.43.30 read from T0287.t06.many.frag # found chain 1nogA in training set T0287 43 :QIKTMHDFF 1nogA 31 :TIDELNSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24471 # 1vjxA.43.53 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 43 :QIKTMHDFF 1vjxA 42 :QERIHAEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24472 # 2btoA.43.418 read from T0287.t06.many.frag # found chain 2btoA in template set T0287 43 :QIKTMHDFF 2btoA 419 :SAQELVQSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24473 # 1v74B.43.46 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 43 :QIKTMHDFF 1v74B 47 :CGEELFMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24474 # 2cbiA.43.497 read from T0287.t06.many.frag # found chain 2cbiA in template set T0287 43 :QIKTMHDFF 2cbiA 528 :EFARMEEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24475 # 1i60A.44.85 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 44 :IKTMHDFFK 1i60A 86 :FKGMMETCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24476 # 1bf5A.44.10 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 44 :IKTMHDFFK 1bf5A 146 :VRNVKDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24477 # 1jqnA.44.34 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 44 :IKTMHDFFK 1jqnA 35 :VETIRKLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24478 # 1nt2B.44.80 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 44 :IKTMHDFFK 1nt2B 92 :VKALEEIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24479 # 1e6iA.44.77 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 44 :IKTMHDFFK 1e6iA 396 :ARLVFNNCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24480 # 1orjA.44.55 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 44 :IKTMHDFFK 1orjA 1056 :IDRVYDIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24481 # 1moq.44.196 read from T0287.t06.many.frag # found chain 1moq in training set T0287 44 :IKTMHDFFK 1moq 437 :LQALPSRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24482 # 1zupA.44.287 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 44 :IKTMHDFFK 1zupA 276 :IQFLEENLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24483 # 1n1fA.44.118 read from T0287.t06.many.frag # found chain 1n1fA in template set T0287 44 :IKTMHDFFK 1n1fA 119 :TRVIHDNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24484 # 1gqiA.44.618 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 44 :IKTMHDFFK 1gqiA 623 :VRAMQRTWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24485 # 3fapB.44.32 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FK 3fapB 147 :ME Number of specific fragments extracted= 2 number of extra gaps= 2 total=24487 # 2acvA.44.432 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 44 :IKTMHDFFK 2acvA 433 :VQEMKEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24488 # 1u0fA.44.221 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 44 :IKTMHDFFK 1u0fA 221 :AETAKEWFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24489 # 1fjgT.44.55 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 44 :IKTMHDFFK 1fjgT 56 :MRKAESLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24490 # 1ow4A.44.96 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 44 :IKTMHDFFK 1ow4A 86 :AKAVNDCAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24491 # 1ail.44.39 read from T0287.t06.many.frag # found chain 1ail in template set T0287 44 :IKTMHDFFK 1ail 40 :QKSLRGRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24492 # 1hx1B.44.26 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 44 :IKTMHDFFK 1hx1B 176 :LEELNKELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24493 # 1nogA.44.31 read from T0287.t06.many.frag # found chain 1nogA in training set T0287 44 :IKTMHDFFK 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24494 # 2etsA.44.23 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 44 :IKTMHDFFK 2etsA 12 :VNNMQQNFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24495 # 2cbiA.44.498 read from T0287.t06.many.frag # found chain 2cbiA in template set T0287 44 :IKTMHDFFK 2cbiA 529 :FARMEEACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24496 # 2c5rA.44.45 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 44 :IKTMHDF 2c5rA 108 :IETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=24497 # 1b4fA.44.66 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 44 :IKTMHDFFK 1b4fA 67 :IQVMRAQMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24498 # 1kkoA.44.214 read from T0287.t06.many.frag # found chain 1kkoA in training set T0287 44 :IKTMHDFFK 1kkoA 215 :VRWLSDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24499 # 256bA.44.29 read from T0287.t06.many.frag # found chain 256bA in training set T0287 44 :IKTMHDFFK 256bA 30 :LTKMRAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24500 # 1h6kA.44.546 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 44 :IKTMHDFFK 1h6kA 566 :LAKFHEVFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24501 # 2ahmA.44.14 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 44 :IKTMHDFFK 2ahmA 15 :SVVLLSVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24502 # 1ct5A.44.17 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 44 :IKTMHDFFK 1ct5A 19 :YESVREVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24503 # 1gw5S.44.83 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 44 :IKTMHDFFK 1gw5S 84 :IHNFVEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24504 # 2f6lA.44.43 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 44 :IKTMHDFFK 2f6lA 77 :LAKLGEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24505 # 1h5uA.44.734 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 44 :IKTMHDFFK 1h5uA 735 :IPELRQIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24506 # 1jqnA.45.35 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 45 :KTMHDFFKQ 1jqnA 36 :ETIRKLSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24507 # 1nt2B.45.81 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 45 :KTMHDFFKQ 1nt2B 93 :KALEEIDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=24508 # 1orjA.45.56 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 45 :KTMHDFFKQ 1orjA 1057 :DRVYDIISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24509 # 1moq.45.197 read from T0287.t06.many.frag # found chain 1moq in training set T0287 45 :KTMHDFFKQ 1moq 438 :QALPSRIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24510 # 1u0fA.45.222 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 45 :KTMHDFFKQ 1u0fA 222 :ETAKEWFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24511 # 1zupA.45.288 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 45 :KTMHDFFKQ 1zupA 277 :QFLEENLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24512 # 1i60A.45.86 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 45 :KTMHDFFKQ 1i60A 87 :KGMMETCKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24513 # 1e6iA.45.78 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 45 :KTMHDFFKQ 1e6iA 397 :RLVFNNCRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24514 # 1bf5A.45.11 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 45 :KTMHDFFKQ 1bf5A 147 :RNVKDKVMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24515 # 1ow4A.45.97 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 45 :KTMHDFFKQ 1ow4A 87 :KAVNDCANQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24516 # 2acvA.45.433 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 45 :KTMHDFFKQ 2acvA 434 :QEMKEMSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24517 # 1n1fA.45.119 read from T0287.t06.many.frag # found chain 1n1fA in template set T0287 45 :KTMHDFFKQ 1n1fA 120 :RVIHDNYDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24518 # 1ail.45.40 read from T0287.t06.many.frag # found chain 1ail in template set T0287 45 :KTMHDFFKQ 1ail 41 :KSLRGRGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=24519 # 1h6kA.45.547 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 45 :KTMHDFFKQ 1h6kA 567 :AKFHEVFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24520 # 2etsA.45.24 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 45 :KTMHDFFKQ 2etsA 13 :NNMQQNFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24521 # 1fjgT.45.56 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 45 :KTMHDFFKQ 1fjgT 57 :RKAESLIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24522 # 3fapB.45.33 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FKQ 3fapB 147 :MER Number of specific fragments extracted= 2 number of extra gaps= 2 total=24524 # 1vjxA.45.55 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 45 :KTMHDFFKQ 1vjxA 44 :RIHAEIFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24525 # 1h5uA.45.735 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 45 :KTMHDFFKQ 1h5uA 736 :PELRQIIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24526 # 1p4xA.45.108 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 45 :KTMHDFFKQ 1p4xA 109 :TLFDQIIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24527 # 1jfmA.45.143 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 45 :KTMHDFFKQ 1jfmA 144 :KDDGEFVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24528 # 1nogA.45.32 read from T0287.t06.many.frag # found chain 1nogA in training set T0287 45 :KTMHDFFKQ 1nogA 33 :DELNSFIGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24529 # 1gqiA.45.619 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 45 :KTMHDFFKQ 1gqiA 624 :RAMQRTWDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24530 # 2ahmA.45.15 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 45 :KTMHDFFKQ 2ahmA 16 :VVLLSVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24531 # 1j5sA.45.227 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 45 :KTMHDFFKQ 1j5sA 216 :WKSHEHFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24532 # 2f6lA.45.44 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 45 :KTMHDFFKQ 2f6lA 78 :AKLGEDARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24533 # 1jeyA.45.518 read from T0287.t06.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)K45 (1jeyA)G519 because S (epsilon) conformation "forbidden" or filtered. T0287 46 :TMHDFFKQ 1jeyA 520 :SLVDEFKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24534 # 1gw5S.45.84 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 45 :KTMHDFFKQ 1gw5S 85 :HNFVEVLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24535 # 2c5rA.45.46 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 45 :KTMHDF 2c5rA 109 :ETQRTY T0287 53 :Q 2c5rA 117 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=24537 # 1vdkA.45.208 read from T0287.t06.many.frag # found chain 1vdkA in training set T0287 45 :KTMHDFFKQ 1vdkA 209 :KTTLAAVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24538 # 1moq.46.198 read from T0287.t06.many.frag # found chain 1moq in training set T0287 46 :TMHDFFKQM 1moq 439 :ALPSRIEQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24539 # 1zupA.46.289 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 46 :TMHDFFKQM 1zupA 278 :FLEENLSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24540 # 1orjA.46.57 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 46 :TMHDFFKQM 1orjA 1058 :RVYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24541 # 1u0fA.46.223 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 46 :TMHDFFKQM 1u0fA 223 :TAKEWFLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24542 # 1jqnA.46.36 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 46 :TMHDFFKQM 1jqnA 37 :TIRKLSKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24543 # 1ow4A.46.98 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 46 :TMHDFFKQM 1ow4A 88 :AVNDCANQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24544 # 1e6iA.46.79 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 46 :TMHDFFKQM 1e6iA 398 :LVFNNCRMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24545 # 1h6kA.46.548 read from T0287.t06.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H48 (1h6kA)H570 because H (helix) conformation "forbidden" or filtered. T0287 46 :TM 1h6kA 568 :KF T0287 49 :DFFKQM 1h6kA 571 :EVFKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24547 # 1bf5A.46.12 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 46 :TMHDFFKQM 1bf5A 148 :NVKDKVMCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24548 # 2acvA.46.434 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 46 :TMHDFFKQM 2acvA 435 :EMKEMSRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24549 # 1i60A.46.87 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 46 :TMHDFFKQM 1i60A 88 :GMMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24550 # 1n1fA.46.120 read from T0287.t06.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)H48 (1n1fA)H123 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)M54 (1n1fA)L129 because P (beta_P) conformation "forbidden" or filtered. T0287 46 :TM 1n1fA 121 :VI T0287 49 :DFFKQ 1n1fA 124 :DNYDQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=24552 # 1ail.46.41 read from T0287.t06.many.frag # found chain 1ail in template set T0287 46 :TMHDFFKQM 1ail 42 :SLRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24553 # 1nt2B.46.82 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 46 :TMHDFFKQM 1nt2B 94 :ALEEIDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24554 # 1vjxA.46.56 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 46 :TMHDFFKQM 1vjxA 45 :IHAEIFRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24555 # 2etsA.46.25 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 46 :TMHDFFKQM 2etsA 14 :NMQQNFENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24556 # 1w33A.46.71 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 46 :TMHDFFKQM 1w33A 141 :KLKEILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24557 # 1jeyA.46.519 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 46 :TMHDFFKQM 1jeyA 520 :SLVDEFKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24558 # 1fjgT.46.57 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 46 :TMHDFFKQM 1fjgT 58 :KAESLIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24559 # 1alu.46.122 read from T0287.t06.many.frag # found chain 1alu in template set T0287 46 :TMHDFFKQM 1alu 121 :VLIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24560 # 1gw5S.46.85 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 46 :TMHDFFKQM 1gw5S 86 :NFVEVLNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24561 # 1p4xA.46.109 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 46 :TMHDFFKQM 1p4xA 110 :LFDQIIKQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24562 # 1h5uA.46.736 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 46 :TMHDFFKQM 1h5uA 737 :ELRQIIEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24563 # 2ahmA.46.16 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 46 :TMHDFFKQM 2ahmA 17 :VLLSVLQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24564 # 1gqiA.46.620 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 46 :TMHDFFKQM 1gqiA 625 :AMQRTWDQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24565 # 1qlwA.46.267 read from T0287.t06.many.frag # found chain 1qlwA in training set T0287 46 :TMHDFFKQM 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24566 # 2f6lA.46.45 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 46 :TMHDFFKQM 2f6lA 79 :KLGEDARSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24567 # 1j5sA.46.228 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)M54 (1j5sA)H225 because G (3-10) conformation "forbidden" or filtered. T0287 46 :TMHDFFKQ 1j5sA 217 :KSHEHFKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24568 # 1qf5A.46.191 read from T0287.t06.many.frag # found chain 1qf5A in template set Warning: unaligning (T0287)M47 (1qf5A)V193 because G (3-10) conformation "forbidden" or filtered. T0287 46 :T 1qf5A 192 :A T0287 48 :HDFFKQM 1qf5A 194 :ADILTSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=24570 # 1r8iA.46.134 read from T0287.t06.many.frag # found chain 1r8iA in template set T0287 46 :TMHDFFKQM 1r8iA 159 :DMQALTEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24571 # 1moq.47.199 read from T0287.t06.many.frag # found chain 1moq in training set T0287 47 :MHDFFKQMH 1moq 440 :LPSRIEQML Number of specific fragments extracted= 1 number of extra gaps= 0 total=24572 # 1u0fA.47.224 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 47 :MHDFFKQMH 1u0fA 224 :AKEWFLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24573 # 1ow4A.47.99 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 47 :MHDFFKQMH 1ow4A 89 :VNDCANQVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24574 # 1zupA.47.290 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 47 :MHDFFKQMH 1zupA 279 :LEENLSYYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24575 # 1e6iA.47.80 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 47 :MHDFFKQMH 1e6iA 399 :VFNNCRMYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24576 # 1jqnA.47.37 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 47 :MHDFFKQMH 1jqnA 38 :IRKLSKSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24577 # 1h6kA.47.549 read from T0287.t06.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H55 (1h6kA)A577 because G (3-10) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1h6kA 569 :FHEVFKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24578 # 1w33A.47.72 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 47 :MHDFFKQMH 1w33A 142 :LKEILEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24579 # 2acvA.47.435 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 47 :MHDFFKQMH 2acvA 436 :MKEMSRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24580 # 1orjA.47.58 read from T0287.t06.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 T0287 47 :MHDFFKQM 1orjA 1059 :VYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24581 # 1ail.47.42 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1ail 43 :LRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24582 # 1nt2B.47.83 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 47 :MHDFFKQMH 1nt2B 95 :LEEIDESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24583 # 1vjxA.47.57 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 47 :MHDFFKQMH 1vjxA 46 :HAEIFRKMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24584 # 1jeyA.47.520 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 47 :MHDFFKQMH 1jeyA 521 :LVDEFKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24585 # 1n1fA.47.121 read from T0287.t06.many.frag # found chain 1n1fA in template set T0287 47 :MHDFFKQMH 1n1fA 122 :IHDNYDQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24586 # 2f6lA.47.46 read from T0287.t06.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 2f6lA 80 :LGEDARSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24587 # 1bf5A.47.13 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 47 :MHDFFKQMH 1bf5A 149 :VKDKVMCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24588 # 1ajsA.47.311 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 47 :MHDFFKQMH 1ajsA 312 :DPELFHEWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24589 # 2etsA.47.26 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 47 :MHDFFKQMH 2etsA 15 :MQQNFENVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24590 # 1i60A.47.88 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 47 :MHDFFKQMH 1i60A 89 :MMETCKTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24591 # 1h5uA.47.737 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 47 :MHDFFKQMH 1h5uA 738 :LRQIIEQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24592 # 1ei6A.47.220 read from T0287.t06.many.frag # found chain 1ei6A in template set T0287 47 :MHDFFKQMH 1ei6A 222 :MDSYFKRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24593 # 1p4xA.47.110 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 47 :MHDFFKQMH 1p4xA 111 :FDQIIKQFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24594 # 1t98A.47.163 read from T0287.t06.many.frag # found chain 1t98A in template set T0287 47 :MHDFFKQMH 1t98A 164 :VAEIFDSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24595 # 1qlwA.47.268 read from T0287.t06.many.frag # found chain 1qlwA in training set T0287 47 :MHDFFKQMH 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24596 # 1fjgT.47.58 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 47 :MHDFFKQMH 1fjgT 59 :AESLIDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24597 # 1alu.47.123 read from T0287.t06.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 T0287 47 :MHDFFKQM 1alu 122 :LIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24598 # 1hz4A.47.219 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 47 :MHDFFKQMH 1hz4A 218 :VRVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24599 # 1r8iA.47.135 read from T0287.t06.many.frag # found chain 1r8iA in template set T0287 47 :MHDFFKQMH 1r8iA 160 :MQALTEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24600 # 1wbeA.47.157 read from T0287.t06.many.frag # found chain 1wbeA in template set T0287 47 :MHDFFKQMH 1wbeA 158 :KSDFLKALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24601 # 1moq.48.200 read from T0287.t06.many.frag # found chain 1moq in training set T0287 48 :HDFFKQMHT 1moq 441 :PSRIEQMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24602 # 1h6kA.48.550 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 48 :HDFFKQMHT 1h6kA 570 :HEVFKTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24603 # 1ow4A.48.100 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 48 :HDFFKQMHT 1ow4A 90 :NDCANQVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24604 # 1zupA.48.291 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 48 :HDFFKQMHT 1zupA 280 :EENLSYYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24605 # 1e6iA.48.81 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 48 :HDFFKQMHT 1e6iA 400 :FNNCRMYNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24606 # 1u0fA.48.225 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 48 :HDFFKQMHT 1u0fA 225 :KEWFLEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24607 # 2acvA.48.436 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 48 :HDFFKQMHT 2acvA 437 :KEMSRNAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24608 # 1jqnA.48.38 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 48 :HDFFKQMHT 1jqnA 39 :RKLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24609 # 1w33A.48.73 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 48 :HDFFKQMHT 1w33A 143 :KEILEILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24610 # 1ail.48.43 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1ail 44 :RGRGSTL T0287 56 :T 1ail 52 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=24612 # 1hz4A.48.220 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 48 :HDFFKQMHT 1hz4A 219 :RVIYWQMTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24613 # 2f6lA.48.47 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 48 :HDFFKQMHT 2f6lA 81 :GEDARSQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24614 # 1jeyA.48.521 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 48 :HDFFKQMHT 1jeyA 522 :VDEFKELVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24615 # 1vjxA.48.58 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 48 :HDFFKQMHT 1vjxA 47 :AEIFRKMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24616 # 1ajsA.48.312 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 48 :HDFFKQMHT 1ajsA 313 :PELFHEWTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24617 # 1orjA.48.59 read from T0287.t06.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)S1068 T0287 48 :HDFFKQM 1orjA 1060 :YDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24618 # 1ei6A.48.221 read from T0287.t06.many.frag # found chain 1ei6A in template set T0287 48 :HDFFKQMHT 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24619 # 1alu.48.124 read from T0287.t06.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 T0287 48 :HDFFKQM 1alu 123 :IQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24620 # 1nt2B.48.84 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 48 :HDFFKQMHT 1nt2B 96 :EEIDESINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24621 # 1t98A.48.164 read from T0287.t06.many.frag # found chain 1t98A in template set T0287 48 :HDFFKQMHT 1t98A 165 :AEIFDSIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24622 # 1wer.48.292 read from T0287.t06.many.frag # found chain 1wer in training set T0287 48 :HDFFKQMHT 1wer 1006 :SDELRTLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24623 # 1g5tA.48.108 read from T0287.t06.many.frag # found chain 1g5tA in training set T0287 48 :HDFFKQMHT 1g5tA 109 :WQHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24624 # 1bf5A.48.14 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 48 :HDFFKQMHT 1bf5A 150 :KDKVMCIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24625 # 1nd4A.48.116 read from T0287.t06.many.frag # found chain 1nd4A in template set T0287 48 :HDFFKQMHT 1nd4A 117 :ADAMRRLHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24626 # 1zx4A.48.72 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1zx4A 214 :CAVGDEM T0287 56 :T 1zx4A 222 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=24628 # 1jixA.48.327 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 48 :HDFFKQMHT 1jixA 328 :HDILNKTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24629 # 1r8iA.48.136 read from T0287.t06.many.frag # found chain 1r8iA in template set T0287 48 :HDFFKQMHT 1r8iA 161 :QALTEQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24630 # 1tukA.48.31 read from T0287.t06.many.frag # found chain 1tukA in template set T0287 48 :HDFFKQMHT 1tukA 32 :QGCFCQYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24631 # 1p4xA.48.111 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 48 :HDFFKQMHT 1p4xA 112 :DQIIKQFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24632 # 1fjgT.48.59 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 48 :HDFFKQMHT 1fjgT 60 :ESLIDKAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24633 # 1moq.49.201 read from T0287.t06.many.frag # found chain 1moq in training set T0287 49 :DFFKQMHTN 1moq 442 :SRIEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24634 # 1h6kA.49.551 read from T0287.t06.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)N57 (1h6kA)S579 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1h6kA 571 :EVFKTLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24635 # 1e6iA.49.82 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 49 :DFFKQMHTN 1e6iA 401 :NNCRMYNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24636 # 1hz4A.49.221 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1hz4A 220 :VIYWQMT T0287 57 :N 1hz4A 228 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=24638 # 1zupA.49.292 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 49 :DFFKQMHTN 1zupA 281 :ENLSYYLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24639 # 1ow4A.49.101 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 49 :DFFKQMHTN 1ow4A 91 :DCANQVNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24640 # 2acvA.49.437 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 49 :DFFKQMHTN 2acvA 438 :EMSRNAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24641 # 1ail.49.44 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1ail 45 :GRGSTL T0287 56 :TN 1ail 52 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24643 # 2f6lA.49.48 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 49 :DFFKQMHTN 2f6lA 82 :EDARSQHID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24644 # 1zx4A.49.73 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1zx4A 215 :AVGDEM T0287 57 :N 1zx4A 223 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=24646 # 1w33A.49.74 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 49 :DFFKQMHTN 1w33A 144 :EILEILKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24647 # 1jqnA.49.39 read from T0287.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1jqnA 40 :KLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24648 # 1u0fA.49.226 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 49 :DFFKQMHTN 1u0fA 226 :EWFLEAAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24649 # 1sdiA.49.93 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 49 :DFFKQMHTN 1sdiA 94 :VLERKLSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24650 # 1nd4A.49.117 read from T0287.t06.many.frag # found chain 1nd4A in template set Warning: unaligning (T0287)T56 (1nd4A)T125 because G (3-10) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1nd4A 118 :DAMRRLH T0287 57 :N 1nd4A 126 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=24652 # 1wer.49.293 read from T0287.t06.many.frag # found chain 1wer in training set T0287 49 :DFFKQMHTN 1wer 1007 :DELRTLSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24653 # 1jeyA.49.522 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 49 :DFFKQMHTN 1jeyA 523 :DEFKELVYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24654 # 1ajsA.49.313 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 49 :DFFKQMHTN 1ajsA 314 :ELFHEWTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24655 # 1r71A.49.56 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 49 :DFFKQMHTN 1r71A 173 :DIAKEIGKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24656 # 1nt2B.49.85 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 49 :DFFKQMHTN 1nt2B 97 :EIDESINML Number of specific fragments extracted= 1 number of extra gaps= 0 total=24657 # 1tukA.49.32 read from T0287.t06.many.frag # found chain 1tukA in template set Warning: unaligning (T0287)F50 (1tukA)C34 because G (3-10) conformation "forbidden" or filtered. T0287 49 :D 1tukA 33 :G T0287 51 :FKQMHTN 1tukA 35 :FCQYAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24659 # 1alu.49.125 read from T0287.t06.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1alu)L133 T0287 49 :DFFKQM 1alu 124 :QFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24660 # 1ei6A.49.222 read from T0287.t06.many.frag # found chain 1ei6A in template set T0287 49 :DFFKQMHTN 1ei6A 224 :SYFKRYHEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24661 # 1t98A.49.165 read from T0287.t06.many.frag # found chain 1t98A in template set T0287 49 :DFFKQMHTN 1t98A 166 :EIFDSIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24662 # 1g5tA.49.109 read from T0287.t06.many.frag # found chain 1g5tA in training set T0287 49 :DFFKQMHTN 1g5tA 110 :QHGKRMLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24663 # 1k78A.49.52 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1k78A 53 :DISRQL T0287 56 :TN 1k78A 60 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24665 # 1mgtA.49.113 read from T0287.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1mgtA 114 :DLAKAL T0287 56 :TN 1mgtA 121 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24667 # 1jixA.49.328 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 49 :DFFKQMHTN 1jixA 329 :DILNKTRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24668 # 1vjxA.49.59 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 49 :DFFKQMHTN 1vjxA 48 :EIFRKMSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24669 # 1cr1A.49.109 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 49 :DFFKQMHTN 1cr1A 380 :QWFDELFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24670 # 1moq.50.202 read from T0287.t06.many.frag # found chain 1moq in training set T0287 50 :FFKQMHTNK 1moq 443 :RIEQMLSQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24671 # 1hz4A.50.222 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 50 :FFKQMHTNK 1hz4A 221 :IYWQMTGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24672 # 1e6iA.50.83 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 50 :FFKQMHTNK 1e6iA 402 :NCRMYNGEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24673 # 1zupA.50.293 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 50 :FFKQMHTNK 1zupA 282 :NLSYYLTDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24674 # 2acvA.50.438 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 50 :FFKQMHTNK 2acvA 439 :MSRNAVVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24675 # 1ow4A.50.102 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 50 :FFKQMHTNK 1ow4A 92 :CANQVNGAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24676 # 1h6kA.50.552 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 50 :FFKQMHTNK 1h6kA 572 :VFKTLAESD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24677 # 2f6lA.50.49 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 50 :FFKQMHTNK 2f6lA 83 :DARSQHIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24678 # 1w33A.50.75 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 50 :FFKQMHTNK 1w33A 145 :ILEILKKNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24679 # 2cygA.50.57 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 50 :FFKQM 2cygA 86 :DVQSL T0287 57 :NK 2cygA 93 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24681 # 1zx4A.50.74 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1zx4A 216 :VGDEMG T0287 57 :NK 1zx4A 223 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24683 # 1ail.50.45 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQM 1ail 46 :RGSTL T0287 56 :T 1ail 52 :L T0287 58 :K 1ail 54 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=24686 # 1sdiA.50.94 read from T0287.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHTN 1sdiA 95 :LERKLSSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24687 # 1wer.50.294 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHTN 1wer 1008 :ELRTLSNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24688 # 1u0fA.50.227 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1u0fA 227 :WFLEAA T0287 57 :NK 1u0fA 234 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24690 # 1z7lA.50.46 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 T0287 50 :FFKQMHTN 1z7lA 662 :NVNQYLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24691 # 1jqnA.50.40 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 50 :FFKQMHTNK 1jqnA 41 :LSKSSRAGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24692 # 1nd4A.50.118 read from T0287.t06.many.frag # found chain 1nd4A in template set Warning: unaligning (T0287)T56 (1nd4A)T125 because G (3-10) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1nd4A 119 :AMRRLH T0287 57 :NK 1nd4A 126 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24694 # 1tukA.50.33 read from T0287.t06.many.frag # found chain 1tukA in template set T0287 50 :FFKQMHTNK 1tukA 34 :CFCQYAKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24695 # 1jeyA.50.523 read from T0287.t06.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)N57 (1jeyA)P531 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1jeyA 524 :EFKELVY T0287 58 :K 1jeyA 532 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=24697 # 1k78A.50.53 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1k78A 54 :ISRQL T0287 56 :TNK 1k78A 60 :VSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=24699 # 1tu9A.50.11 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 50 :FFKQMHTNK 1tu9A 10 :SYGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=24700 # 1j2zA.50.212 read from T0287.t06.many.frag # found chain 1j2zA in template set T0287 50 :FFKQMHTNK 1j2zA 213 :LYKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24701 # 1sw5B.50.248 read from T0287.t06.many.frag # found chain 1sw5B in template set T0287 50 :FFKQMHTNK 1sw5B 249 :LNYQYDVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24702 # 1r71A.50.57 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 50 :FFKQMHTNK 1r71A 174 :IAKEIGKSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24703 # 1jixA.50.329 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 50 :FFKQMHTNK 1jixA 330 :ILNKTRAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24704 # 1g5tA.50.110 read from T0287.t06.many.frag # found chain 1g5tA in training set Warning: unaligning (T0287)N57 (1g5tA)D118 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1g5tA 111 :HGKRMLA T0287 58 :K 1g5tA 119 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=24706 # 1ajsA.50.314 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 50 :FFKQMHTNK 1ajsA 315 :LFHEWTGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24707 # 1mgtA.50.114 read from T0287.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1mgtA 115 :LAKAL T0287 56 :TNK 1mgtA 121 :TSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24709 # 2cwyA.50.47 read from T0287.t06.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N57 (2cwyA)G55 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 2cwyA 48 :ALHQRRL T0287 58 :K 2cwyA 56 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=24711 # 1moq.51.203 read from T0287.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1moq 444 :IEQMLSQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24712 # 1hz4A.51.223 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1hz4A 222 :YWQMT T0287 57 :NKG 1hz4A 228 :DKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24714 # 2cygA.51.58 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 51 :FKQM 2cygA 87 :VQSL T0287 57 :NKG 2cygA 93 :NPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24716 # 1wer.51.295 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1wer 1009 :LRTLSNE T0287 59 :G 1wer 1017 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=24718 # 1w33A.51.76 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 51 :FKQMHTNKG 1w33A 146 :LEILKKNSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24719 # 2acvA.51.439 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 2acvA 440 :SRNAVVD T0287 59 :G 2acvA 448 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=24721 # 1e6iA.51.84 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 51 :FKQMHTNKG 1e6iA 403 :CRMYNGENT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24722 # 1sdiA.51.95 read from T0287.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1sdiA 96 :ERKLSSA T0287 59 :G 1sdiA 104 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=24724 # 1zupA.51.294 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 51 :FKQMHTNKG 1zupA 283 :LSYYLTDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24725 # 1z7lA.51.47 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 51 :FKQMHTN 1z7lA 663 :VNQYLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24726 # 1ow4A.51.103 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 51 :FKQMHTNKG 1ow4A 93 :ANQVNGAYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24727 # 1zx4A.51.75 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 51 :FKQMHTNKG 1zx4A 217 :GDEMGNKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24728 # 1u0fA.51.228 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 51 :FKQMHTNKG 1u0fA 228 :FLEAAKDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24729 # 1tu9A.51.12 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 51 :FKQMHTNKG 1tu9A 11 :YGRCCASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24730 # 1he1A.51.86 read from T0287.t06.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)N57 (1he1A)T187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1he1A 181 :LQQWGT T0287 59 :G 1he1A 189 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=24732 # 1h6kA.51.553 read from T0287.t06.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)N57 (1h6kA)S579 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1h6kA 573 :FKTLAE T0287 58 :KG 1h6kA 580 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24734 # 2f6lA.51.50 read from T0287.t06.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHT 2f6lA 84 :ARSQHI T0287 58 :KG 2f6lA 91 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24736 # 1k78A.51.54 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 51 :FKQM 1k78A 55 :SRQL T0287 56 :TNK 1k78A 60 :VSH Number of specific fragments extracted= 2 number of extra gaps= 2 total=24738 # 1j2zA.51.213 read from T0287.t06.many.frag # found chain 1j2zA in template set Warning: unaligning (T0287)G59 (1j2zA)P222 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1j2zA 214 :YKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24739 # 1q79A.51.347 read from T0287.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)G59 (1q79A)A356 because Y (epsilon') conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1q79A 348 :TDEILLSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24740 # 1tukA.51.34 read from T0287.t06.many.frag # found chain 1tukA in template set T0287 51 :FKQMHTNKG 1tukA 35 :FCQYAKDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24741 # 1n69A.51.16 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 51 :FKQMHTNKG 1n69A 15 :QTAVRTNST Number of specific fragments extracted= 1 number of extra gaps= 0 total=24742 # 1ail.51.46 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQM 1ail 47 :GSTL T0287 56 :TNKG 1ail 52 :LNIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24744 # 1ajsA.51.315 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 51 :FKQMHTNKG 1ajsA 316 :FHEWTGNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24745 # 2bmaA.51.35 read from T0287.t06.many.frag # found chain 2bmaA in template set T0287 51 :FKQMHTNKG 2bmaA 11 :VMKLDPNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24746 # 1jqnA.51.41 read from T0287.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1jqnA 42 :SKSSRA T0287 58 :KG 1jqnA 49 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=24748 # 1sw5B.51.249 read from T0287.t06.many.frag # found chain 1sw5B in template set T0287 51 :FKQMHTNKG 1sw5B 250 :NYQYDVEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24749 # 1jeyA.51.524 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 51 :FKQMHTNKG 1jeyA 525 :FKELVYPPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24750 # 1z21A.51.62 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1z21A 100 :LQQFDSF T0287 59 :G 1z21A 108 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=24752 # 1jixA.51.330 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 51 :FKQMHTNKG 1jixA 331 :LNKTRAKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24753 # 2cygA.52.59 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 52 :KQM 2cygA 88 :QSL T0287 57 :NKGA 2cygA 93 :NPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24755 # 1sdiA.52.96 read from T0287.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1sdiA 97 :RKLSSA T0287 59 :GA 1sdiA 104 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24757 # 1hz4A.52.224 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1hz4A 223 :WQMT T0287 57 :NKGA 1hz4A 228 :DKAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24759 # 1wer.52.296 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)G59 (1wer)G1017 because S (epsilon) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1wer 1010 :RTLSNER T0287 60 :A 1wer 1018 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=24761 # 1zupA.52.295 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 52 :KQMHTNKGA 1zupA 284 :SYYLTDKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24762 # 1moq.52.204 read from T0287.t06.many.frag # found chain 1moq in training set T0287 52 :KQMHTNKGA 1moq 445 :EQMLSQDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24763 # 2acvA.52.440 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)G59 (2acvA)G448 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 2acvA 441 :RNAVVDG T0287 60 :A 2acvA 449 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=24765 # 1z7lA.52.48 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 52 :KQMHTN 1z7lA 664 :NQYLTD T0287 60 :A 1z7lA 672 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=24767 # 1w33A.52.77 read from T0287.t06.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)A60 (1w33A)H155 because G (3-10) conformation "forbidden" or filtered. T0287 52 :KQMHTNKG 1w33A 147 :EILKKNSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24768 # 1tu9A.52.13 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1tu9A 12 :GRCCAS T0287 59 :GA 1tu9A 19 :GF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24770 # 1e6iA.52.85 read from T0287.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)H55 (1e6iA)N407 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQM 1e6iA 404 :RMY T0287 56 :TNKGA 1e6iA 408 :GENTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24772 # 1he1A.52.87 read from T0287.t06.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)N57 (1he1A)T187 because E (beta_S) conformation "forbidden" or filtered. T0287 52 :KQMHT 1he1A 182 :QQWGT T0287 58 :KGA 1he1A 188 :GGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24774 # 1u0fA.52.229 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1u0fA 229 :LEAA T0287 57 :NKGA 1u0fA 234 :DPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24776 # 1zx4A.52.76 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1zx4A 218 :DEMG T0287 57 :NKGA 1zx4A 223 :KNLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24778 # 1k78A.52.55 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 52 :KQM 1k78A 56 :RQL T0287 56 :TNK 1k78A 60 :VSH T0287 60 :A 1k78A 64 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=24781 # 1q79A.52.348 read from T0287.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)N57 (1q79A)S354 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1q79A)A356 because Y (epsilon') conformation "forbidden" or filtered. T0287 52 :KQMHT 1q79A 349 :DEILL T0287 58 :K 1q79A 355 :K T0287 60 :A 1q79A 357 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=24784 # 2f6lA.52.51 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 52 :KQMHTNKGA 2f6lA 85 :RSQHIDPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24785 # 1fipA.52.78 read from T0287.t06.many.frag # found chain 1fipA in template set T0287 52 :KQMHTNKGA 1fipA 79 :LMMGINRGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24786 # 1sw5B.52.250 read from T0287.t06.many.frag # found chain 1sw5B in template set Warning: unaligning (T0287)K58 (1sw5B)K257 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1sw5B 251 :YQYDVE T0287 59 :GA 1sw5B 258 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24788 # 1w9cA.52.195 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 52 :KQMHTNKGA 1w9cA 902 :QNVAQEEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24789 # 1y0zA.52.44 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 52 :KQMHTNKGA 1y0zA 45 :QTIKTQKHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24790 # 1n69A.52.17 read from T0287.t06.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)N57 (1n69A)N21 because D (zeta) conformation "forbidden" or filtered. T0287 52 :KQMHT 1n69A 16 :TAVRT T0287 58 :KGA 1n69A 22 :STF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24792 # 1jixA.52.331 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 52 :KQMHTNKGA 1jixA 332 :NKTRAKKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24793 # 1ykjA.52.368 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 52 :KQMHTNKGA 1ykjA 1369 :EYYLGSEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24794 # 2dpmA.52.71 read from T0287.t06.many.frag # found chain 2dpmA in training set T0287 52 :KQMHTNKGA 2dpmA 72 :QQIKDNPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24795 # 1ail.52.47 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 1ail 48 :STL T0287 56 :TNKGA 1ail 52 :LNIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24797 # 2a6sA.52.13 read from T0287.t06.many.frag # found chain 2a6sA in template set T0287 52 :KQMHTNKGA 2a6sA 14 :LYWQETDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24798 # 1h6kA.52.554 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 52 :KQMHTNKGA 1h6kA 574 :KTLAESDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24799 # 1ow4A.52.104 read from T0287.t06.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1ow4A)Y100 because D (zeta) conformation "forbidden" or filtered. T0287 52 :KQMH 1ow4A 94 :NQVN T0287 57 :N 1ow4A 99 :A T0287 59 :GA 1ow4A 101 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=24802 # 1t98A.52.168 read from T0287.t06.many.frag # found chain 1t98A in template set T0287 52 :KQMHTNKGA 1t98A 169 :DSIDLTQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24803 # 1sdiA.53.97 read from T0287.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHTN 1sdiA 98 :KLSSA T0287 59 :GAL 1sdiA 104 :GAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24805 # 2cygA.53.60 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 53 :QM 2cygA 89 :SL T0287 57 :NKGAL 2cygA 93 :NPSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24807 # 1zupA.53.296 read from T0287.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)M54 (1zupA)Y286 because G (3-10) conformation "forbidden" or filtered. T0287 53 :Q 1zupA 285 :Y T0287 55 :HTNKGAL 1zupA 287 :LTDKNYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=24809 # 1wer.53.297 read from T0287.t06.many.frag # found chain 1wer in training set T0287 53 :QMHTNKGAL 1wer 1011 :TLSNERGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24810 # 1hz4A.53.225 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 53 :QMHTNKGAL 1hz4A 224 :QMTGDKAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24811 # 1z7lA.53.49 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 53 :QMHTN 1z7lA 665 :QYLTD T0287 60 :AL 1z7lA 672 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24813 # 1tu9A.53.14 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 53 :QMHTNKGAL 1tu9A 13 :RCCASTGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24814 # 2acvA.53.441 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QMHTN 2acvA 442 :NAVVD T0287 59 :GAL 2acvA 448 :GSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24816 # 1moq.53.205 read from T0287.t06.many.frag # found chain 1moq in training set T0287 53 :QMHTNKGAL 1moq 446 :QMLSQDKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24817 # 1w33A.53.78 read from T0287.t06.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)A60 (1w33A)H155 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMHTNKG 1w33A 148 :ILKKNSE T0287 61 :L 1w33A 156 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=24819 # 1he1A.53.88 read from T0287.t06.many.frag # found chain 1he1A in template set T0287 53 :QMHTNKGAL 1he1A 183 :QWGTTGGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24820 # 1zx4A.53.77 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1zx4A 219 :EMG T0287 57 :NKGAL 1zx4A 223 :KNLEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24822 # 1k78A.53.56 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 53 :QM 1k78A 57 :QL T0287 56 :TNKGAL 1k78A 60 :VSHGCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24824 # 2f6lA.53.52 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 53 :QMHTNKGAL 2f6lA 86 :SQHIDPDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24825 # 1e6iA.53.86 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 53 :QMHTNKGAL 1e6iA 405 :MYNGENTSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24826 # 1u0fA.53.230 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 53 :QMHTNKGAL 1u0fA 230 :EAAKDPSAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24827 # 1ykjA.53.369 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 53 :QMHTNKGAL 1ykjA 1370 :YYLGSEAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24828 # 1y0zA.53.45 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 53 :QMHTNKGAL 1y0zA 46 :TIKTQKHYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24829 # 1urjA.53.604 read from T0287.t06.many.frag # found chain 1urjA in template set T0287 53 :QMHTNKGAL 1urjA 605 :TIITNREAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24830 # 2bnxA.53.245 read from T0287.t06.many.frag # found chain 2bnxA in template set T0287 53 :QMHTNKGAL 2bnxA 376 :MEMDDFGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24831 # 1w9cA.53.196 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 53 :QMHTNKGAL 1w9cA 903 :NVAQEEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24832 # 1q79A.53.349 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 53 :QMHTNKGAL 1q79A 350 :EILLSKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24833 # 1fipA.53.79 read from T0287.t06.many.frag # found chain 1fipA in template set T0287 53 :QMHTNKGAL 1fipA 80 :MMGINRGTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24834 # 1tffA.53.119 read from T0287.t06.many.frag # found chain 1tffA in template set Warning: unaligning (T0287)N57 (1tffA)D124 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHT 1tffA 120 :KVFN T0287 58 :KGAL 1tffA 125 :QSAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24836 # 1jixA.53.332 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 53 :QMHTNKGAL 1jixA 333 :KTRAKKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24837 # 1dk0A.53.138 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1dk0A 139 :LMS T0287 57 :NKGAL 1dk0A 143 :DTGAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24839 # 1tzvA.53.52 read from T0287.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)N57 (1tzvA)N57 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMHT 1tzvA 53 :GIKE T0287 58 :KGAL 1tzvA 58 :LSMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24841 # 1b25A.53.375 read from T0287.t06.many.frag # found chain 1b25A in template set Warning: unaligning (T0287)N57 (1b25A)R380 because L (left) conformation "forbidden" or filtered. T0287 53 :QMHT 1b25A 376 :DIAY T0287 58 :KGAL 1b25A 381 :KGEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24843 # 2dpmA.53.72 read from T0287.t06.many.frag # found chain 2dpmA in training set T0287 53 :QMHTNKGAL 2dpmA 73 :QIKDNPQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24844 # 1z21A.53.64 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 53 :QMHTN 1z21A 102 :QFDSF T0287 59 :GAL 1z21A 108 :KRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=24846 # 1sdiA.54.98 read from T0287.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHT 1sdiA 99 :LSS T0287 58 :KGALD 1sdiA 103 :KGALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24848 # 2cygA.54.61 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :M 2cygA 90 :L T0287 58 :KGALD 2cygA 94 :PSAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=24850 # 1zupA.54.297 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 54 :MHTNKGALD 1zupA 286 :YLTDKNYMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24851 # 1wer.54.298 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)G59 (1wer)G1017 because S (epsilon) conformation "forbidden" or filtered. T0287 54 :MHTNK 1wer 1012 :LSNER T0287 60 :ALD 1wer 1018 :AQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24853 # 1tu9A.54.15 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHTN 1tu9A 14 :CCAS T0287 59 :GALD 1tu9A 19 :GFFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24855 # 1z7lA.54.50 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 54 :MHTN 1z7lA 666 :YLTD T0287 60 :ALD 1z7lA 672 :FVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24857 # 1hz4A.54.226 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1hz4A 225 :MT T0287 57 :NKGALD 1hz4A 228 :DKAAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24859 # 1zx4A.54.78 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 54 :MHTNKGALD 1zx4A 220 :MGNKNLEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24860 # 1k78A.54.57 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHT 1k78A 58 :LRV T0287 58 :KGALD 1k78A 62 :HGCVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24862 # 1dk0A.54.139 read from T0287.t06.many.frag # found chain 1dk0A in training set T0287 54 :MHTNKGALD 1dk0A 140 :MSGDTGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24863 # 2acvA.54.442 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)N57 (2acvA)D446 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (2acvA)G448 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHT 2acvA 443 :AVV T0287 60 :ALD 2acvA 449 :SSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24865 # 1he1A.54.89 read from T0287.t06.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)H55 (1he1A)G185 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1he1A 184 :W T0287 56 :TN 1he1A 186 :TT T0287 59 :GALD 1he1A 189 :GAAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=24868 # 2f6lA.54.53 read from T0287.t06.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :M 2f6lA 87 :Q T0287 56 :T 2f6lA 89 :I T0287 58 :KGALD 2f6lA 91 :PDYVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=24871 # 1w33A.54.79 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 54 :MHTNKGALD 1w33A 149 :LKKNSEHYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24872 # 1zs4A.54.33 read from T0287.t06.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)H55 (1zs4A)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1zs4A 33 :V T0287 56 :TNKGALD 1zs4A 35 :VDKSQIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24874 # 2bnxA.54.246 read from T0287.t06.many.frag # found chain 2bnxA in template set T0287 54 :MHTNKGALD 2bnxA 377 :EMDDFGEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24875 # 1y0zA.54.46 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 54 :MHTNKGALD 1y0zA 47 :IKTQKHYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24876 # 1fipA.54.80 read from T0287.t06.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1fipA 81 :M T0287 56 :TNKGALD 1fipA 83 :INRGTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24878 # 1ho8A.54.254 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 54 :MHTNKGALD 1ho8A 253 :LTFNPVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24879 # 1xpjA.54.50 read from T0287.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)N57 (1xpjA)Y54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 54 :MHT 1xpjA 51 :MRT T0287 59 :GALD 1xpjA 56 :GNVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=24881 # 1ykjA.54.370 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 54 :MHTNKGALD 1ykjA 1371 :YLGSEAGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24882 # 1e6iA.54.87 read from T0287.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHTNK 1e6iA 406 :YNGEN T0287 60 :ALD 1e6iA 412 :SYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24884 # 1moq.54.206 read from T0287.t06.many.frag # found chain 1moq in training set T0287 54 :MHTNKGALD 1moq 447 :MLSQDKRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24885 # 1tffA.54.120 read from T0287.t06.many.frag # found chain 1tffA in template set T0287 54 :MHTNKGALD 1tffA 121 :VFNDQSASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24886 # 1cxzB.54.53 read from T0287.t06.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)H55 (1cxzB)G67 because L (left) conformation "forbidden" or filtered. T0287 54 :M 1cxzB 66 :L T0287 56 :TNKGALD 1cxzB 68 :RSLGPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24888 # 1w9cA.54.197 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 54 :MHTNKGALD 1w9cA 904 :VAQEEAAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24889 # 1cg5B.54.90 read from T0287.t06.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)H55 (1cg5B)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1cg5B 91 :I T0287 56 :TNKGALD 1cg5B 93 :VDTQNFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24891 # 1j75A.54.34 read from T0287.t06.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)M54 (1j75A)C138 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H55 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALD 1j75A 140 :VPKKTLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24892 # 1z21A.54.65 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 54 :MHTN 1z21A 103 :FDSF T0287 59 :GALD 1z21A 108 :KRWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24894 # 1u0fA.54.231 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1u0fA 231 :AA T0287 57 :NKGALD 1u0fA 234 :DPSAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24896 # 1sdiA.55.99 read from T0287.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HTN 1sdiA 100 :SSA T0287 59 :GALDK 1sdiA 104 :GALDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24898 # 2cygA.55.62 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDK 2cygA 94 :PSAAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24899 # 1tu9A.55.16 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 55 :HTNKGALDK 1tu9A 15 :CASTGFFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24900 # 1wer.55.299 read from T0287.t06.many.frag # found chain 1wer in training set T0287 55 :HTNKGALDK 1wer 1013 :SNERGAQQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24901 # 1zupA.55.298 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 55 :HTNKGALDK 1zupA 287 :LTDKNYMNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24902 # 1hz4A.55.227 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1hz4A 226 :T T0287 57 :NKGALDK 1hz4A 228 :DKAAAAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24904 # 1z7lA.55.51 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 55 :HTN 1z7lA 667 :LTD T0287 60 :ALDK 1z7lA 672 :FVER Number of specific fragments extracted= 2 number of extra gaps= 1 total=24906 # 1dk0A.55.140 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1dk0A 141 :S T0287 57 :NKGALDK 1dk0A 143 :DTGALET Number of specific fragments extracted= 2 number of extra gaps= 1 total=24908 # 1zx4A.55.79 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1zx4A 221 :G T0287 57 :NKGALDK 1zx4A 223 :KNLEFDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24910 # 1k78A.55.58 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1k78A 60 :VSHGCVSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24911 # 2acvA.55.443 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 55 :HTNKGALDK 2acvA 444 :VVDGGSSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24912 # 1zc6A.55.221 read from T0287.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)N57 (1zc6A)V224 because G (3-10) conformation "forbidden" or filtered. T0287 55 :HT 1zc6A 222 :AR T0287 58 :KGALDK 1zc6A 225 :DPEADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24914 # 2bnxA.55.247 read from T0287.t06.many.frag # found chain 2bnxA in template set T0287 55 :HTNKGALDK 2bnxA 378 :MDDFGEVFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24915 # 1he1A.55.90 read from T0287.t06.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)N57 (1he1A)T187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HT 1he1A 185 :GT T0287 59 :GALDK 1he1A 189 :GAASQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24917 # 1e6iA.55.88 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 55 :HTNKGALDK 1e6iA 407 :NGENTSYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24918 # 1cxzB.55.54 read from T0287.t06.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)N57 (1cxzB)S69 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 1cxzB 67 :GR T0287 58 :KGALDK 1cxzB 70 :LGPVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24920 # 1xpjA.55.51 read from T0287.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)A60 (1xpjA)N57 because N (gamma') conformation "forbidden" or filtered. T0287 55 :HTNKG 1xpjA 52 :RTYEG T0287 61 :LDK 1xpjA 58 :VGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24922 # 1cg5B.55.91 read from T0287.t06.many.frag # found chain 1cg5B in training set T0287 55 :HTNKGALDK 1cg5B 92 :GVDTQNFKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24923 # 1zs4A.55.34 read from T0287.t06.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)H55 (1zs4A)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1zs4A 35 :VDKSQISR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24924 # 1tffA.55.121 read from T0287.t06.many.frag # found chain 1tffA in template set T0287 55 :HTNKGALDK 1tffA 122 :FNDQSASDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24925 # 2f6lA.55.54 read from T0287.t06.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 2f6lA 88 :HI T0287 58 :KGALDK 2f6lA 91 :PDYVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24927 # 1y6xA.55.34 read from T0287.t06.many.frag # found chain 1y6xA in training set Warning: unaligning (T0287)N57 (1y6xA)G37 because S (epsilon) conformation "forbidden" or filtered. T0287 55 :HT 1y6xA 35 :DG T0287 58 :KGALDK 1y6xA 38 :VHALGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24929 # 1j75A.55.35 read from T0287.t06.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)H55 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1j75A 140 :VPKKTLNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24930 # 1w33A.55.80 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 55 :HTNKGALDK 1w33A 150 :KKNSEHYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24931 # 1ho8A.55.255 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 55 :HTNKGALDK 1ho8A 254 :TFNPVFANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24932 # 1ykjA.55.371 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 55 :HTNKGALDK 1ykjA 1372 :LGSEAGLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24933 # 1urjA.55.606 read from T0287.t06.many.frag # found chain 1urjA in template set Warning: unaligning (T0287)N57 (1urjA)N609 because E (beta_S) conformation "forbidden" or filtered. T0287 55 :HT 1urjA 607 :IT T0287 58 :KGALDK 1urjA 610 :REALHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24935 # 1z21A.55.66 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 55 :HTN 1z21A 104 :DSF T0287 59 :GALDK 1z21A 108 :KRWEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24937 # 1fipA.55.81 read from T0287.t06.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1fipA 83 :INRGTLRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24938 # 1ikpA.55.301 read from T0287.t06.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)A60 (1ikpA)Q307 because G (3-10) conformation "forbidden" or filtered. T0287 55 :HTNKG 1ikpA 302 :RLSWN T0287 61 :LDK 1ikpA 308 :VDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24940 # 1sdiA.56.100 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 56 :TNKGALDKV 1sdiA 101 :SAKGALDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24941 # 1tu9A.56.17 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 56 :TNKGALDKV 1tu9A 16 :ASTGFFDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24942 # 2cygA.56.63 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDKV 2cygA 93 :NPSAAGDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=24943 # 1wer.56.300 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 1wer 1014 :N T0287 58 :KGALDKV 1wer 1016 :RGAQQHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24945 # 1dk0A.56.141 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1dk0A)G145 because H (helix) conformation "forbidden" or filtered. T0287 57 :NK 1dk0A 143 :DT T0287 60 :ALDKV 1dk0A 146 :ALETA Number of specific fragments extracted= 2 number of extra gaps= 2 total=24947 # 1zc6A.56.222 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 56 :TNKGALDKV 1zc6A 223 :RVDPEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24948 # 1zupA.56.299 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 56 :TNKGALDKV 1zupA 288 :TDKNYMNTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24949 # 1xpjA.56.52 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 56 :TNKGALDKV 1xpjA 53 :TYEGNVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24950 # 1hz4A.56.228 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1hz4A 228 :DKAAAANW Number of specific fragments extracted= 1 number of extra gaps= 1 total=24951 # 1ikpA.56.302 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 56 :TNKGALDKV 1ikpA 303 :LSWNQVDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24952 # 1k78A.56.59 read from T0287.t06.many.frag # found chain 1k78A in template set T0287 56 :TNKGALDKV 1k78A 60 :VSHGCVSKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24953 # 2bnxA.56.248 read from T0287.t06.many.frag # found chain 2bnxA in template set T0287 56 :TNKGALDKV 2bnxA 379 :DDFGEVFQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24954 # 1z7lA.56.52 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 56 :TN 1z7lA 668 :TD T0287 60 :ALDKV 1z7lA 672 :FVERT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24956 # 1zx4A.56.80 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)N57 (1zx4A)K223 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 1zx4A 222 :N T0287 58 :KGALDKV 1zx4A 224 :NLEFDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24958 # 1q2lA.56.840 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TNK 1q2lA 864 :QAP T0287 61 :LDKV 1q2lA 869 :LGEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24960 # 1cxzB.56.55 read from T0287.t06.many.frag # found chain 1cxzB in template set T0287 56 :TNKGALDKV 1cxzB 68 :RSLGPVELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24961 # 1y6xA.56.35 read from T0287.t06.many.frag # found chain 1y6xA in training set Warning: unaligning (T0287)N57 (1y6xA)G37 because S (epsilon) conformation "forbidden" or filtered. T0287 56 :T 1y6xA 36 :G T0287 58 :KGALDKV 1y6xA 38 :VHALGKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24963 # 1j75A.56.36 read from T0287.t06.many.frag # found chain 1j75A in template set T0287 56 :TNKGALDKV 1j75A 140 :VPKKTLNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24964 # 1zs4A.56.35 read from T0287.t06.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)T56 (1zs4A)V35 because Y (epsilon') conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1zs4A 36 :DKSQISRW Number of specific fragments extracted= 1 number of extra gaps= 1 total=24965 # 1ykjA.56.372 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 56 :TNKGALDKV 1ykjA 1373 :GSEAGLATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24966 # 1tzvA.56.55 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 56 :TNKGALDKV 1tzvA 56 :ENLSMIDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24967 # 1e6iA.56.89 read from T0287.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TNK 1e6iA 408 :GEN T0287 60 :ALDKV 1e6iA 412 :SYYKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24969 # 1cg5B.56.92 read from T0287.t06.many.frag # found chain 1cg5B in training set T0287 56 :TNKGALDKV 1cg5B 93 :VDTQNFKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24970 # 2acvA.56.444 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 56 :TNKGALDKV 2acvA 445 :VDGGSSLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24971 # 1he1A.56.91 read from T0287.t06.many.frag # found chain 1he1A in template set T0287 56 :TNKGALDKV 1he1A 186 :TTGGAASQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24972 # 2aqlA.56.58 read from T0287.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKV 2aqlA 212 :YAVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24973 # 1tffA.56.122 read from T0287.t06.many.frag # found chain 1tffA in template set Warning: unaligning (T0287)N57 (1tffA)D124 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 1tffA 123 :N T0287 58 :KGALDKV 1tffA 125 :QSASDHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24975 # 1z21A.56.67 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TN 1z21A 105 :SF T0287 59 :GALDKV 1z21A 108 :KRWEAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24977 # 1qoyA.56.216 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 56 :TNKGALDKV 1qoyA 202 :VVEGKLIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24978 # 1w33A.56.81 read from T0287.t06.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 1w33A 151 :K T0287 58 :KGALDKV 1w33A 153 :SEHYNII Number of specific fragments extracted= 2 number of extra gaps= 1 total=24980 # 1tu9A.57.18 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)N57 (1tu9A)S17 because E (beta_S) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1tu9A 18 :TGFFDDFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=24981 # 1zc6A.57.223 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 57 :NKGALDKVL 1zc6A 224 :VDPEADALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24982 # 1ikpA.57.303 read from T0287.t06.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)N57 (1ikpA)S304 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1ikpA 305 :WNQVDQVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24983 # 2cygA.57.64 read from T0287.t06.many.frag # found chain 2cygA in template set T0287 57 :NKGALDKVL 2cygA 93 :NPSAAGDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24984 # 1xpjA.57.53 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 57 :NKGALDKVL 1xpjA 54 :YEGNVGKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24985 # 1dk0A.57.142 read from T0287.t06.many.frag # found chain 1dk0A in training set T0287 57 :NKGALDKVL 1dk0A 143 :DTGALETAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24986 # 1sdiA.57.101 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 57 :NKGALDKVL 1sdiA 102 :AKGALDTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24987 # 1wer.57.301 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 59 :GALDKVL 1wer 1017 :GAQQHVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24988 # 1zx4A.57.81 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 57 :NKGALDKVL 1zx4A 223 :KNLEFDQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24989 # 2aqlA.57.59 read from T0287.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVL 2aqlA 212 :YAVNEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24990 # 1q2lA.57.841 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. T0287 57 :NK 1q2lA 865 :AP T0287 60 :ALDKVL 1q2lA 868 :TLGEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24992 # 1y6xA.57.36 read from T0287.t06.many.frag # found chain 1y6xA in training set Warning: unaligning (T0287)N57 (1y6xA)G37 because S (epsilon) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1y6xA 38 :VHALGKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24993 # 1hz4A.57.229 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 57 :NKGALDKVL 1hz4A 228 :DKAAAANWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24994 # 1k78A.57.60 read from T0287.t06.many.frag # found chain 1k78A in template set T0287 57 :NKGALDKVL 1k78A 61 :SHGCVSKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24995 # 1ykjA.57.373 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 57 :NKGALDKVL 1ykjA 1374 :SEAGLATIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24996 # 1z7lA.57.53 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 57 :N 1z7lA 669 :D T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24998 # 1tzvA.57.56 read from T0287.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)N57 (1tzvA)N57 because G (3-10) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1tzvA 58 :LSMIDDLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24999 # 1cxzB.57.56 read from T0287.t06.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)N57 (1cxzB)S69 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1cxzB 70 :LGPVELLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25000 # 1zupA.57.300 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 57 :NKGALDKVL 1zupA 289 :DKNYMNTRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25001 # 1j75A.57.37 read from T0287.t06.many.frag # found chain 1j75A in template set T0287 57 :NKGALDKVL 1j75A 141 :PKKTLNQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25002 # 1qoyA.57.217 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 57 :NKGALDKVL 1qoyA 203 :VEGKLIPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25003 # 1mw9X.57.555 read from T0287.t06.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)K58 (1mw9X)E557 because G (3-10) conformation "forbidden" or filtered. T0287 57 :N 1mw9X 556 :H T0287 59 :GALDKVL 1mw9X 558 :AEWKAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25005 # 2bnxA.57.249 read from T0287.t06.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)G59 (2bnxA)G382 because H (helix) conformation "forbidden" or filtered. T0287 57 :NK 2bnxA 380 :DF T0287 60 :ALDKVL 2bnxA 383 :EVFQII Number of specific fragments extracted= 2 number of extra gaps= 1 total=25007 # 1zs4A.57.36 read from T0287.t06.many.frag # found chain 1zs4A in template set T0287 57 :NKGALDKVL 1zs4A 36 :DKSQISRWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25008 # 1cg5B.57.93 read from T0287.t06.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)N57 (1cg5B)D94 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1cg5B 95 :TQNFKLLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25009 # 1e6iA.57.90 read from T0287.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)K58 (1e6iA)N410 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 57 :N 1e6iA 409 :E T0287 60 :ALDKVL 1e6iA 412 :SYYKYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25011 # 1zk8A.57.107 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 57 :NKGALDKVL 1zk8A 108 :RDEEVRKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25012 # 1g3kA.57.66 read from T0287.t06.many.frag # found chain 1g3kA in template set Warning: unaligning (T0287)K58 (1g3kA)Q68 because L (left) conformation "forbidden" or filtered. T0287 57 :N 1g3kA 67 :H T0287 59 :GALDKVL 1g3kA 69 :GHLLKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25014 # 1zpyA.57.73 read from T0287.t06.many.frag # found chain 1zpyA in template set T0287 57 :NKGALDKVL 1zpyA 74 :CDPAFDKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25015 # 1ho8A.57.257 read from T0287.t06.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N57 (1ho8A)N256 because D (zeta) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1ho8A 257 :PVFANELV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25016 # 1zc6A.58.224 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 58 :KGALDKVLR 1zc6A 225 :DPEADALLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25017 # 1tu9A.58.19 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 58 :KGALDKVLR 1tu9A 18 :TGFFDDFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25018 # 1xpjA.58.54 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 58 :KGALDKVLR 1xpjA 55 :EGNVGKINI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25019 # 1y6xA.58.37 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 58 :KGALDKVLR 1y6xA 38 :VHALGKKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25020 # 1ikpA.58.304 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 58 :KGALDKVLR 1ikpA 305 :WNQVDQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25021 # 1dk0A.58.143 read from T0287.t06.many.frag # found chain 1dk0A in training set T0287 58 :KGALDKVLR 1dk0A 144 :TGALETALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25022 # 2aqlA.58.60 read from T0287.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVLR 2aqlA 212 :YAVNEVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25023 # 1q2lA.58.842 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :KG 1q2lA 866 :PQ T0287 61 :LDKVLR 1q2lA 869 :LGEEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25025 # 2cygA.58.65 read from T0287.t06.many.frag # found chain 2cygA in template set T0287 58 :KGALDKVLR 2cygA 94 :PSAAGDWIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25026 # 1tzvA.58.57 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 58 :KGALDKVLR 1tzvA 58 :LSMIDDLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25027 # 2f5xA.58.285 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 58 :KGALDKVLR 2f5xA 274 :PEALQAKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25028 # 1qoyA.58.218 read from T0287.t06.many.frag # found chain 1qoyA in template set Warning: unaligning (T0287)K58 (1qoyA)E204 because P (beta_P) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1qoyA 205 :GKLIPELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25029 # 1zx4A.58.82 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 58 :KGALDKVLR 1zx4A 224 :NLEFDQLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25030 # 1zk8A.58.108 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 58 :KGALDKVLR 1zk8A 109 :DEEVRKAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25031 # 1hz4A.58.230 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 58 :KGALDKVLR 1hz4A 229 :KAAAANWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25032 # 1p4cA.58.318 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 58 :KGALDKVLR 1p4cA 319 :ETGVDEVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25033 # 1wer.58.302 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1wer 1017 :GAQQHVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25034 # 1mw9X.58.556 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 58 :KGALDKVLR 1mw9X 557 :EAEWKAVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25035 # 1po5A.58.119 read from T0287.t06.many.frag # found chain 1po5A in training set T0287 58 :KGALDKVLR 1po5A 139 :KRSVEERIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25036 # 1zpyA.58.74 read from T0287.t06.many.frag # found chain 1zpyA in template set T0287 58 :KGALDKVLR 1zpyA 75 :DPAFDKELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25037 # 1j75A.58.38 read from T0287.t06.many.frag # found chain 1j75A in template set T0287 58 :KGALDKVLR 1j75A 142 :KKTLNQVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25038 # 1z7lA.58.54 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 Warning: unaligning (T0287)R66 (1z7lA)R678 because G (3-10) conformation "forbidden" or filtered. T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 1 number of extra gaps= 2 total=25039 # 1k78A.58.61 read from T0287.t06.many.frag # found chain 1k78A in template set T0287 58 :KGALDKVLR 1k78A 62 :HGCVSKILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25040 # 1fjgT.58.73 read from T0287.t06.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1fjgT)N75 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLR 1fjgT 76 :AAARRKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=25041 # 1ykjA.58.374 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 58 :KGALDKVLR 1ykjA 1375 :EAGLATIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25042 # 1ho8A.58.258 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 58 :KGALDKVLR 1ho8A 257 :PVFANELVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25043 # 1zs4A.58.37 read from T0287.t06.many.frag # found chain 1zs4A in template set T0287 58 :KGALDKVLR 1zs4A 37 :KSQISRWKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25044 # 1sdiA.58.102 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 58 :KGALDKVLR 1sdiA 103 :KGALDTLGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25045 # 1cg5B.58.94 read from T0287.t06.many.frag # found chain 1cg5B in training set T0287 58 :KGALDKVLR 1cg5B 95 :TQNFKLLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25046 # 1cxzB.58.57 read from T0287.t06.many.frag # found chain 1cxzB in template set T0287 58 :KGALDKVLR 1cxzB 70 :LGPVELLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25047 # 1zc6A.59.225 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 59 :GALDKVLRN 1zc6A 226 :PEADALLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25048 # 1tu9A.59.20 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 59 :GALDKVLRN 1tu9A 19 :GFFDDFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25049 # 1y6xA.59.38 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 59 :GALDKVLRN 1y6xA 39 :HALGKKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25050 # 1ikpA.59.305 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 59 :GALDKVLRN 1ikpA 306 :NQVDQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25051 # 2f5xA.59.286 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 59 :GALDKVLRN 2f5xA 275 :EALQAKVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25052 # 1xpjA.59.55 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 59 :GALDKVLRN 1xpjA 56 :GNVGKINIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25053 # 1zx4A.59.83 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 59 :GALDKVLRN 1zx4A 225 :LEFDQLIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25054 # 1p4cA.59.319 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 59 :GALDKVLRN 1p4cA 320 :TGVDEVLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25055 # 1zk8A.59.109 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 59 :GALDKVLRN 1zk8A 110 :EEVRKAGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25056 # 2aqlA.59.61 read from T0287.t06.many.frag # found chain 2aqlA in template set T0287 59 :GALDKVLRN 2aqlA 212 :YAVNEVVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25057 # 1mw9X.59.557 read from T0287.t06.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)A60 (1mw9X)E559 because E (beta_S) conformation "forbidden" or filtered. T0287 59 :G 1mw9X 558 :A T0287 61 :LDKVLRN 1mw9X 560 :WKAVLDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=25059 # 1tzvA.59.58 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 59 :GALDKVLRN 1tzvA 59 :SMIDDLISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25060 # 1ho8A.59.259 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 59 :GALDKVLRN 1ho8A 258 :VFANELVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25061 # 1q2lA.59.843 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25062 # 1fjgT.59.74 read from T0287.t06.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLRN 1fjgT 76 :AAARRKSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25063 # 2cygA.59.66 read from T0287.t06.many.frag # found chain 2cygA in template set T0287 59 :GALDKVLRN 2cygA 95 :SAAGDWIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25064 # 1or7A.59.46 read from T0287.t06.many.frag # found chain 1or7A in template set T0287 59 :GALDKVLRN 1or7A 44 :GDVPDVVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25065 # 1dk0A.59.144 read from T0287.t06.many.frag # found chain 1dk0A in training set T0287 59 :GALDKVLRN 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25066 # 1h6pA.59.129 read from T0287.t06.many.frag # found chain 1h6pA in template set T0287 59 :GALDKVLRN 1h6pA 172 :EKASKILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25067 # 1qoyA.59.219 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 59 :GALDKVLRN 1qoyA 205 :GKLIPELKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25068 # 1po5A.59.120 read from T0287.t06.many.frag # found chain 1po5A in training set T0287 59 :GALDKVLRN 1po5A 140 :RSVEERIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25069 # 1a6m.59.128 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 59 :GALDKVLRN 1a6m 129 :GAMNKALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25070 # 1hz4A.59.231 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 59 :GALDKVLRN 1hz4A 230 :AAAANWLRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25071 # 1jk0B.59.240 read from T0287.t06.many.frag # found chain 1jk0B in template set T0287 59 :GALDKVLRN 1jk0B 241 :KIIEKIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25072 # 1ykjA.59.375 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 59 :GALDKVLRN 1ykjA 1376 :AGLATIAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25073 # 1xp8A.59.179 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 59 :GALDKVLRN 1xp8A 177 :GLQARLMSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25074 # 1cg5B.59.95 read from T0287.t06.many.frag # found chain 1cg5B in training set T0287 59 :GALDKVLRN 1cg5B 96 :QNFKLLGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25075 # 1dlwA.59.71 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 59 :GALDKVLRN 1dlwA 72 :GVSNAQFTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25076 # 1psrA.59.28 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 59 :GALDKVLRN 1psrA 29 :PSLLTMMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25077 # 1wa5C.59.393 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 59 :GALDKVLRN 1wa5C 394 :VLVTNIFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25078 # 1zc6A.60.226 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 60 :ALDKVLRNY 1zc6A 227 :EADALLRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25079 # 2f5xA.60.287 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 60 :ALDKVLRNY 2f5xA 276 :ALQAKVKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25080 # 1y6xA.60.39 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 60 :ALDKVLRNY 1y6xA 40 :ALGKKLLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25081 # 1mw9X.60.558 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 60 :ALDKVLRNY 1mw9X 559 :EWKAVLDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25082 # 1tu9A.60.21 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 60 :ALDKVLRNY 1tu9A 20 :FFDDFYRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25083 # 1tzvA.60.59 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 60 :ALDKVLRNY 1tzvA 60 :MIDDLISRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25084 # 1p4cA.60.320 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 60 :ALDKVLRNY 1p4cA 321 :GVDEVLTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25085 # 1zk8A.60.110 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 60 :ALDKVLRNY 1zk8A 111 :EVRKAGDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25086 # 1ikpA.60.306 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 60 :ALDKVLRNY 1ikpA 307 :QVDQVIRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25087 # 1qoyA.60.220 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 60 :ALDKVLRNY 1qoyA 206 :KLIPELKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25088 # 1h6pA.60.130 read from T0287.t06.many.frag # found chain 1h6pA in template set T0287 60 :ALDKVLRNY 1h6pA 173 :KASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25089 # 2aqlA.60.62 read from T0287.t06.many.frag # found chain 2aqlA in template set T0287 60 :ALDKVLRNY 2aqlA 213 :AVNEVVAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25090 # 1ho8A.60.260 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 60 :ALDKVLRNY 1ho8A 259 :FANELVQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25091 # 1fjgT.60.75 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 60 :ALDKVLRNY 1fjgT 76 :AAARRKSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25092 # 1psrA.60.29 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 60 :ALDKVLRNY 1psrA 30 :SLLTMMKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25093 # 1wa5C.60.394 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 60 :ALDKVLRNY 1wa5C 395 :LVTNIFLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25094 # 1xp8A.60.180 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 60 :ALDKVLRNY 1xp8A 178 :LQARLMSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25095 # 1bgf.60.100 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 60 :ALDKVLRNY 1bgf 100 :HVAVVISNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25096 # 1xpjA.60.56 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 60 :ALDKVLRNY 1xpjA 57 :NVGKINIHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25097 # 1q2lA.60.844 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1q2lA 869 :LGEEASKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25098 # 1a6m.60.129 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 60 :ALDKVLRNY 1a6m 130 :AMNKALELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25099 # 1po5A.60.121 read from T0287.t06.many.frag # found chain 1po5A in training set T0287 60 :ALDKVLRNY 1po5A 141 :SVEERIQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25100 # 1or7A.60.47 read from T0287.t06.many.frag # found chain 1or7A in template set Warning: unaligning (T0287)A60 (1or7A)D45 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1or7A 46 :VPDVVQEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25101 # 1dk0A.60.145 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 T0287 60 :ALDKVLRN 1dk0A 146 :ALETALNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25102 # 1zx4A.60.84 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 60 :ALDKVLRNY 1zx4A 226 :EFDQLIQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25103 # 1txjA.60.85 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 60 :ALDKVLRNY 1txjA 86 :EYSVYIKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25104 # 2cygA.60.67 read from T0287.t06.many.frag # found chain 2cygA in template set T0287 60 :ALDKVLRNY 2cygA 96 :AAGDWIRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25105 # 1jk0B.60.241 read from T0287.t06.many.frag # found chain 1jk0B in template set T0287 60 :ALDKVLRNY 1jk0B 242 :IIEKIITEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25106 # 1cfr.60.33 read from T0287.t06.many.frag # found chain 1cfr in template set T0287 60 :ALDKVLRNY 1cfr 34 :EFSKVLSGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25107 # 2bnlA.60.82 read from T0287.t06.many.frag # found chain 2bnlA in template set T0287 60 :ALDKVLRNY 2bnlA 83 :FLATALAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25108 # 1zc6A.61.227 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 61 :LDKVLRNYM 1zc6A 228 :ADALLRQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25109 # 2f5xA.61.288 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 61 :LDKVLRNYM 2f5xA 277 :LQAKVKQQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25110 # 1mw9X.61.559 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 61 :LDKVLRNYM 1mw9X 560 :WKAVLDHFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25111 # 1tu9A.61.22 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 61 :LDKVLRNYM 1tu9A 21 :FDDFYRHFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25112 # 1p4cA.61.321 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 61 :LDKVLRNYM 1p4cA 322 :VDEVLTLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25113 # 1y6xA.61.40 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 61 :LDKVLRNYM 1y6xA 41 :LGKKLLEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25114 # 1qoyA.61.221 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 61 :LDKVLRNYM 1qoyA 207 :LIPELKNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25115 # 1zk8A.61.111 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 61 :LDKVLRNYM 1zk8A 112 :VRKAGDGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25116 # 1bgf.61.101 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 61 :LDKVLRNYM 1bgf 101 :VAVVISNCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25117 # 1txjA.61.86 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 61 :LDKVLRNYM 1txjA 87 :YSVYIKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25118 # 1fjgT.61.76 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 61 :LDKVLRNYM 1fjgT 77 :AARRKSRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25119 # 1tzvA.61.60 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 61 :LDKVLRNYM 1tzvA 61 :IDDLISRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25120 # 1h6pA.61.131 read from T0287.t06.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 61 :LDKVLRNY 1h6pA 174 :ASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25121 # 1psrA.61.30 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 61 :LDKVLRNYM 1psrA 31 :LLTMMKENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25122 # 1wa5C.61.395 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 61 :LDKVLRNYM 1wa5C 396 :VTNIFLAHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25123 # 1xp8A.61.181 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 61 :LDKVLRNYM 1xp8A 179 :QARLMSQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25124 # 1ho8A.61.261 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 61 :LDKVLRNYM 1ho8A 260 :ANELVQKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25125 # 1ikpA.61.307 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 61 :LDKVLRNYM 1ikpA 308 :VDQVIRNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25126 # 1a6m.61.130 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 61 :LDKVLRNYM 1a6m 131 :MNKALELFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25127 # 1or7A.61.48 read from T0287.t06.many.frag # found chain 1or7A in template set T0287 61 :LDKVLRNYM 1or7A 46 :VPDVVQEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25128 # 1sz9A.61.66 read from T0287.t06.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1sz9A 67 :LDSICKNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25129 # 2aqlA.61.63 read from T0287.t06.many.frag # found chain 2aqlA in template set T0287 61 :LDKVLRNYM 2aqlA 214 :VNEVVAGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25130 # 1cfr.61.34 read from T0287.t06.many.frag # found chain 1cfr in template set T0287 61 :LDKVLRNYM 1cfr 35 :FSKVLSGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25131 # 1zx4A.61.85 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 61 :LDKVLRNYM 1zx4A 227 :FDQLIQNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25132 # 2bnlA.61.83 read from T0287.t06.many.frag # found chain 2bnlA in template set T0287 61 :LDKVLRNYM 2bnlA 84 :LATALAEFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25133 # 1jk0B.61.242 read from T0287.t06.many.frag # found chain 1jk0B in template set T0287 61 :LDKVLRNYM 1jk0B 243 :IEKIITEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25134 # 1q2lA.61.845 read from T0287.t06.many.frag # found chain 1q2lA in template set T0287 61 :LDKVLRNYM 1q2lA 869 :LGEEASKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25135 # 2au5A.61.84 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 61 :LDKVLRNYM 2au5A 82 :LKGELARLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25136 # 1xpjA.61.57 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 61 :LDKVLRNYM 1xpjA 58 :VGKINIHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25137 # 1hs6A.61.424 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 61 :LDKVLRNYM 1hs6A 424 :WKDFLYSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25138 # 1zc6A.62.228 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 62 :DKVLRNYMK 1zc6A 229 :DALLRQAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25139 # 2f5xA.62.289 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 62 :DKVLRNYMK 2f5xA 278 :QAKVKQQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25140 # 1bgf.62.102 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 62 :DKVLRNYMK 1bgf 102 :AVVISNCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25141 # 1qoyA.62.222 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 62 :DKVLRNYMK 1qoyA 208 :IPELKNKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25142 # 1txjA.62.87 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 62 :DKVLRNYMK 1txjA 88 :SVYIKNYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25143 # 1mw9X.62.560 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 62 :DKVLRNYMK 1mw9X 561 :KAVLDHFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25144 # 1wa5C.62.396 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 62 :DKVLRNYMK 1wa5C 397 :TNIFLAHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25145 # 1tu9A.62.23 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 62 :DKVLRNYMK 1tu9A 22 :DDFYRHFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25146 # 1tzvA.62.61 read from T0287.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)Y68 (1tzvA)Y68 because G (3-10) conformation "forbidden" or filtered. T0287 62 :DKVLRN 1tzvA 62 :DDLISR T0287 69 :MK 1tzvA 69 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25148 # 1psrA.62.31 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 62 :DKVLRNYMK 1psrA 32 :LTMMKENFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25149 # 1y6xA.62.41 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 62 :DKVLRNYMK 1y6xA 42 :GKKLLEEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25150 # 1fjgT.62.77 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 62 :DKVLRNYMK 1fjgT 78 :ARRKSRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25151 # 1xp8A.62.182 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 62 :DKVLRNYMK 1xp8A 180 :ARLMSQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25152 # 1hs6A.62.425 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 62 :DKVLRNYMK 1hs6A 425 :KDFLYSYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25153 # 1zk8A.62.112 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 62 :DKVLRNYMK 1zk8A 113 :RKAGDGIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25154 # 1h6pA.62.132 read from T0287.t06.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 62 :DKVLRNY 1h6pA 175 :SKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25155 # 1sz9A.62.67 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 62 :DKVLRNYMK 1sz9A 68 :DSICKNVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25156 # 1p4cA.62.322 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 62 :DKVLRNYMK 1p4cA 323 :DEVLTLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25157 # 1ho8A.62.262 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 62 :DKVLRNYMK 1ho8A 261 :NELVQKYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25158 # 2au5A.62.85 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 62 :DKVLRNYMK 2au5A 83 :KGELARLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25159 # 1j5wA.62.221 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 62 :DKVLRNYMK 1j5wA 210 :FRHFDEYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25160 # 1ytaA.62.111 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 62 :DKVLRNYMK 1ytaA 112 :RRFLFKYMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25161 # 2mhr.62.47 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 62 :DKVLRNYMK 2mhr 48 :VKVTTNHFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25162 # 1hw1A.62.185 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 62 :DKVLRNYMK 1hw1A 186 :RSLALGFYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25163 # 1a6m.62.131 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 62 :DKVLRNYMK 1a6m 132 :NKALELFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25164 # 1po5A.62.123 read from T0287.t06.many.frag # found chain 1po5A in training set T0287 62 :DKVLRNYMK 1po5A 143 :EERIQEEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25165 # 1i60A.62.117 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 62 :DKVLRNYMK 1i60A 118 :KKSSVDVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25166 # 1ikpA.62.308 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 62 :DKVLRNYMK 1ikpA 309 :DQVIRNALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25167 # 1h7cA.62.67 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 62 :DKVLRNYMK 1h7cA 68 :QRRLEAAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25168 # 2bnlA.62.84 read from T0287.t06.many.frag # found chain 2bnlA in template set T0287 62 :DKVLRNYMK 2bnlA 85 :ATALAEFWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25169 # 1zc6A.63.229 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 63 :KVLRNYMKD 1zc6A 230 :ALLRQAGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=25170 # 1bgf.63.103 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 63 :KVLRNYMKD 1bgf 103 :VVISNCLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25171 # 2f5xA.63.290 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 63 :KVLRNYMKD 2f5xA 279 :AKVKQQVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25172 # 1txjA.63.88 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 63 :KVLRNYMKD 1txjA 89 :VYIKNYMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25173 # 1qoyA.63.223 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 63 :KVLRNYMKD 1qoyA 209 :PELKNKLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25174 # 1fjgT.63.78 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 63 :KVLRNYMKD 1fjgT 79 :RRKSRLMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25175 # 1mw9X.63.561 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 63 :KVLRNYMKD 1mw9X 562 :AVLDHFFSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25176 # 1wa5C.63.397 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 63 :KVLRNYMKD 1wa5C 398 :NIFLAHMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25177 # 1tu9A.63.24 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 63 :KVLRNYMKD 1tu9A 23 :DFYRHFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25178 # 1hs6A.63.426 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 63 :KVLRNYMKD 1hs6A 426 :DFLYSYFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25179 # 1zk8A.63.113 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 63 :KVLRNYMKD 1zk8A 114 :KAGDGIVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25180 # 1y6xA.63.42 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 63 :KVLRNYMKD 1y6xA 43 :KKLLEEAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25181 # 1psrA.63.32 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 63 :KVLRNYMKD 1psrA 33 :TMMKENFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25182 # 1xp8A.63.183 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 63 :KVLRNYMKD 1xp8A 181 :RLMSQALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25183 # 1sz9A.63.68 read from T0287.t06.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 63 :KVLRNYMK 1sz9A 69 :SICKNVGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=25184 # 1j5wA.63.222 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 63 :KVLRNYMKD 1j5wA 211 :RHFDEYEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25185 # 1ytaA.63.112 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 63 :KVLRNYMKD 1ytaA 113 :RFLFKYMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25186 # 2au5A.63.86 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 63 :KVLRNYMKD 2au5A 84 :GELARLIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25187 # 1p4cA.63.323 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 63 :KVLRNYMKD 1p4cA 324 :EVLTLLKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25188 # 2mhr.63.48 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 63 :KVLRNYMKD 2mhr 49 :KVTTNHFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25189 # 1muwA.63.64 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 63 :KVLRNYMKD 1muwA 65 :TERESHIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25190 # 1eyqA.63.104 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 63 :KVLRNYMKD 1eyqA 105 :EYSRKVMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25191 # 1mxrA.63.123 read from T0287.t06.many.frag # found chain 1mxrA in training set T0287 63 :KVLRNYMKD 1mxrA 124 :HIIRNIVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=25192 # 1hw1A.63.186 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 63 :KVLRNYMKD 1hw1A 187 :SLALGFYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25193 # 1tzvA.63.62 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 63 :KVLRNYMKD 1tzvA 63 :DLISRYLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25194 # 1a6m.63.132 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 63 :KVLRNYMKD 1a6m 133 :KALELFRKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25195 # 1i60A.63.118 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 63 :KVLRNYMKD 1i60A 119 :KSSVDVLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25196 # 1h7cA.63.68 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 63 :KVLRNYMKD 1h7cA 69 :RRLEAAYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25197 # 1yacA.63.184 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 63 :KVLRNYMKD 1yacA 185 :TLFSNHIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25198 # 1z8uA.63.38 read from T0287.t06.many.frag # found chain 1z8uA in template set T0287 63 :KVLRNYMKD 1z8uA 39 :TVVEDWMNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25199 # 1bgf.64.104 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 64 :VLRNYMKDY 1bgf 104 :VISNCLREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25200 # 1wa5C.64.398 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 64 :VLRNYMKDY 1wa5C 399 :IFLAHMKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25201 # 1txjA.64.89 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 64 :VLRNYMKDY 1txjA 90 :YIKNYMQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25202 # 2f5xA.64.291 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 64 :VLRNYMKDY 2f5xA 280 :KVKQQVPQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25203 # 1zc6A.64.230 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 64 :VLRNYMKDY 1zc6A 231 :LLRQAGEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25204 # 1qoyA.64.224 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 64 :VLRNYMKDY 1qoyA 210 :ELKNKLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25205 # 1fjgT.64.79 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 64 :VLRNYMKDY 1fjgT 80 :RKSRLMRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25206 # 1mw9X.64.562 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 64 :VLRNYMKDY 1mw9X 563 :VLDHFFSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25207 # 1hs6A.64.427 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 64 :VLRNYMKDY 1hs6A 427 :FLYSYFKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25208 # 1xp8A.64.184 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 64 :VLRNYMKDY 1xp8A 182 :LMSQALRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25209 # 1ytaA.64.113 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 64 :VLRNYMKDY 1ytaA 114 :FLFKYMPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25210 # 1psrA.64.33 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 64 :VLRNYMKDY 1psrA 34 :MMKENFPNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25211 # 1i60A.64.119 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 64 :VLRNYMKDY 1i60A 120 :SSVDVLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25212 # 1tu9A.64.25 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 64 :VLRNYMKDY 1tu9A 24 :FYRHFLASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25213 # 1muwA.64.65 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 64 :VLRNYMKDY 1muwA 66 :ERESHIKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25214 # 1j5wA.64.223 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 64 :VLRNYMKDY 1j5wA 212 :HFDEYEKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25215 # 1y6xA.64.43 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 64 :VLRNYMKDY 1y6xA 44 :KLLEEAGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25216 # 1hw1A.64.187 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 64 :VLRNYMKDY 1hw1A 188 :LALGFYHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25217 # 2mhr.64.49 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 64 :VLRNYMKDY 2mhr 50 :VTTNHFTHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25218 # 1eyqA.64.105 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 64 :VLRNYMKDY 1eyqA 106 :YSRKVMENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25219 # 1zk8A.64.114 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 64 :VLRNYMKDY 1zk8A 115 :AGDGIVKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25220 # 1mxrA.64.124 read from T0287.t06.many.frag # found chain 1mxrA in training set Warning: unaligning (T0287)N67 (1mxrA)N128 because G (3-10) conformation "forbidden" or filtered. T0287 64 :VLR 1mxrA 125 :IIR T0287 68 :YMKDY 1mxrA 129 :IVNDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25222 # 1h7cA.64.69 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 64 :VLRNYMKDY 1h7cA 70 :RLEAAYLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25223 # 2au5A.64.87 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 64 :VLRNYMKDY 2au5A 85 :ELARLIRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25224 # 1b5l.64.118 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 64 :VLRNYMKDY 1b5l 119 :TVKKYFQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25225 # 1yacA.64.185 read from T0287.t06.many.frag # found chain 1yacA in training set Warning: unaligning (T0287)Y68 (1yacA)H190 because G (3-10) conformation "forbidden" or filtered. T0287 64 :VLRN 1yacA 186 :LFSN T0287 69 :MKDY 1yacA 191 :IPDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25227 # 1l9lA.64.43 read from T0287.t06.many.frag # found chain 1l9lA in training set Warning: unaligning (T0287)D71 because of BadResidue code BAD_PEPTIDE in next template residue (1l9lA)Y52 Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE at template residue (1l9lA)Y52 T0287 64 :VLRNYMK 1l9lA 44 :VCRNFMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25228 # 1p4cA.64.324 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 64 :VLRNYMKDY 1p4cA 325 :VLTLLKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25229 # 1z8uA.64.39 read from T0287.t06.many.frag # found chain 1z8uA in template set T0287 64 :VLRNYMKDY 1z8uA 40 :VVEDWMNFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25230 # 1sz9A.64.69 read from T0287.t06.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 64 :VLRNYMK 1sz9A 70 :ICKNVGS T0287 72 :Y 1sz9A 78 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=25232 # 1wa5C.65.399 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 65 :LRNYMKDYR 1wa5C 400 :FLAHMKGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25233 # 1bgf.65.105 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 65 :LRNYMKDYR 1bgf 105 :ISNCLREER Number of specific fragments extracted= 1 number of extra gaps= 0 total=25234 # 1zc6A.65.231 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 65 :LRNYMKDYR 1zc6A 232 :LRQAGEDAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25235 # 2f5xA.65.292 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 65 :LRNYMKDYR 2f5xA 281 :VKQQVPQWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25236 # 1txjA.65.90 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 65 :LRNYMKDYR 1txjA 91 :IKNYMQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25237 # 1fjgT.65.80 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 65 :LRNYMKDYR 1fjgT 81 :KSRLMRKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25238 # 1xp8A.65.185 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 65 :LRNYMKDYR 1xp8A 183 :MSQALRKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25239 # 1muwA.65.66 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 65 :LRNYMKDYR 1muwA 67 :RESHIKRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25240 # 1mw9X.65.563 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 65 :LRNYMKDYR 1mw9X 564 :LDHFFSDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25241 # 1qoyA.65.225 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 65 :LRNYMKDYR 1qoyA 211 :LKNKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25242 # 1j5wA.65.224 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 65 :LRNYMKDYR 1j5wA 213 :FDEYEKEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25243 # 1hs6A.65.428 read from T0287.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)M69 (1hs6A)F432 because G (3-10) conformation "forbidden" or filtered. T0287 65 :LRNY 1hs6A 428 :LYSY T0287 70 :KDYR 1hs6A 433 :KDKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25245 # 1eyqA.65.106 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 65 :LRNYMKDYR 1eyqA 107 :SRKVMENCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25246 # 2mhr.65.50 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 65 :LRNYMKDYR 2mhr 51 :TTNHFTHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25247 # 1ytaA.65.114 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 65 :LRNYMKDYR 1ytaA 115 :LFKYMPELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25248 # 1psrA.65.34 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 65 :LRNYMKDYR 1psrA 35 :MKENFPNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25249 # 1p4cA.65.325 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 65 :LRNYMKDYR 1p4cA 326 :LTLLKADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25250 # 1zk8A.65.115 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 65 :LRNYMKDYR 1zk8A 116 :GDGIVKLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25251 # 1b5l.65.119 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 65 :LRNYMKDYR 1b5l 120 :VKKYFQGIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25252 # 1tu9A.65.26 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 65 :LRNYMKDYR 1tu9A 25 :YRHFLASSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25253 # 1i60A.65.120 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 65 :LRNYMKDYR 1i60A 121 :SVDVLTELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25254 # 1h7cA.65.70 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 65 :LRNYMKDYR 1h7cA 71 :LEAAYLDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25255 # 1a6m.65.134 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 65 :LRNYMKDYR 1a6m 135 :LELFRKDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25256 # 1hw1A.65.188 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 65 :LRNYMKDYR 1hw1A 189 :ALGFYHKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25257 # 1uw4B.65.78 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 65 :LRNYMKDYR 1uw4B 846 :VDGVLEDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25258 # 1y6xA.65.44 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 65 :LRNYMKDYR 1y6xA 45 :LLEEAGEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25259 # 1dlwA.65.77 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 65 :LRNYMKDYR 1dlwA 78 :FTTVIGHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25260 # 1fjgI.65.84 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 65 :LRNYMKDYR 1fjgI 85 :LVQYNPDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25261 # 1ail.65.35 read from T0287.t06.many.frag # found chain 1ail in template set T0287 65 :LRNYMKDYR 1ail 36 :LRRDQKSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25262 # 2au5A.65.88 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 65 :LRNYMKDYR 2au5A 86 :LARLIRLYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25263 # 1wa5C.66.400 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 66 :RNYMKDYRA 1wa5C 401 :LAHMKGFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25264 # 2f5xA.66.293 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 66 :RNYMKDYRA 2f5xA 282 :KQQVPQWAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25265 # 1bgf.66.106 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 66 :RNYMKDYRA 1bgf 106 :SNCLREERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25266 # 1qoyA.66.226 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 66 :RNYMKDYRA 1qoyA 212 :KNKLKSVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25267 # 1txjA.66.91 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 66 :RNYMKDYRA 1txjA 92 :KNYMQKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25268 # 1fjgT.66.81 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 66 :RNYMKDYRA 1fjgT 82 :SRLMRKVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25269 # 1muwA.66.67 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 66 :RNYMKDYRA 1muwA 68 :ESHIKRFRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25270 # 1zc6A.66.232 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 66 :RNYMKDYRA 1zc6A 233 :RQAGEDAWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25271 # 1xp8A.66.186 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 66 :RNYMKDYRA 1xp8A 184 :SQALRKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25272 # 1psrA.66.35 read from T0287.t06.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)Y68 (1psrA)N38 because G (3-10) conformation "forbidden" or filtered. T0287 66 :RN 1psrA 36 :KE T0287 69 :MKDYRA 1psrA 39 :FPNFLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25274 # 2mhr.66.51 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 66 :RNYMKDYRA 2mhr 52 :TNHFTHEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25275 # 1i60A.66.121 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 66 :RNYMKDYRA 1i60A 122 :VDVLTELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25276 # 1eyqA.66.107 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 66 :RNYMKDYRA 1eyqA 108 :RKVMENCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25277 # 1hs6A.66.429 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 66 :RNYMKDYRA 1hs6A 429 :YSYFKDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25278 # 1h7cA.66.71 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 66 :RNYMKDYRA 1h7cA 72 :EAAYLDLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25279 # 1a6m.66.135 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 66 :RNYMKDYRA 1a6m 136 :ELFRKDIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25280 # 1mw9X.66.564 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 66 :RNYMKDYRA 1mw9X 565 :DHFFSDFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25281 # 1hw1A.66.189 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 66 :RNYMKDYRA 1hw1A 190 :LGFYHKLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25282 # 1b5l.66.120 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 66 :RNYMKDYRA 1b5l 121 :KKYFQGIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25283 # 1ytaA.66.115 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 66 :RNYMKDYRA 1ytaA 116 :FKYMPELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25284 # 1iuqA.66.37 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 66 :RNYMKDYRA 1iuqA 39 :EELYQNYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25285 # 1j5wA.66.225 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 66 :RNYMKDYRA 1j5wA 214 :DEYEKEFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25286 # 1fkmA.66.61 read from T0287.t06.many.frag # found chain 1fkmA in template set T0287 66 :RNYMKDYRA 1fkmA 309 :QRKRKEYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25287 # 1fjgI.66.85 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 66 :RNYMKDYRA 1fjgI 86 :VQYNPDYRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25288 # 1ail.66.36 read from T0287.t06.many.frag # found chain 1ail in template set T0287 66 :RNYMKDYRA 1ail 37 :RRDQKSLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25289 # 1dlwA.66.78 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 66 :RNYMKDYRA 1dlwA 79 :TTVIGHLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25290 # 1p4cA.66.326 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 66 :RNYMKDYRA 1p4cA 327 :TLLKADIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25291 # 1zk8A.66.116 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 66 :RNYMKDYRA 1zk8A 117 :DGIVKLCLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25292 # 1yacA.66.187 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 66 :RNYMKDYRA 1yacA 188 :SNHIPDYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25293 # 1yviA.66.75 read from T0287.t06.many.frag # found chain 1yviA in template set T0287 66 :RNYMKDYRA 1yviA 76 :DAYVHQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25294 # 2f5xA.67.294 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 67 :NYMKDYRAV 2f5xA 283 :QQVPQWAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25295 # 1wa5C.67.401 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 67 :NYMKDYRAV 1wa5C 402 :AHMKGFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25296 # 1fjgT.67.82 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 67 :NYMKDYRAV 1fjgT 83 :RLMRKVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25297 # 1muwA.67.68 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 67 :NYMKDYRAV 1muwA 69 :SHIKRFRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25298 # 1bgf.67.107 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 67 :NYMKDYRAV 1bgf 107 :NCLREERRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25299 # 1xp8A.67.187 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 67 :NYMKDYRAV 1xp8A 185 :QALRKLTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25300 # 1fjgI.67.86 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 67 :NYMKDYRAV 1fjgI 87 :QYNPDYRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25301 # 2mhr.67.52 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 67 :NYMKDYRAV 2mhr 53 :NHFTHEEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25302 # 1iuqA.67.38 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 67 :NYMKDYRAV 1iuqA 40 :ELYQNYRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25303 # 1zc6A.67.233 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 67 :NYMKDYRAV 1zc6A 234 :QAGEDAWAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25304 # 1eyqA.67.108 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 67 :NYMKDYRAV 1eyqA 109 :KVMENCVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25305 # 1qoyA.67.227 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 67 :NYMKDYRAV 1qoyA 213 :NKLKSVQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25306 # 1txjA.67.92 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 67 :NYMKDYRAV 1txjA 93 :NYMQKILKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25307 # 1hw1A.67.190 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 67 :NYMKDYRAV 1hw1A 191 :GFYHKLSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25308 # 1dlwA.67.79 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 67 :NYMKDYRAV 1dlwA 80 :TVIGHLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25309 # 1psrA.67.36 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 67 :NYMKDYRAV 1psrA 37 :ENFPNFLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25310 # 1a6m.67.136 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 67 :NYMKDYRAV 1a6m 137 :LFRKDIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25311 # 1h7cA.67.72 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 67 :NYMKDYRAV 1h7cA 73 :AAYLDLQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25312 # 1hs6A.67.430 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 67 :NYMKDYRAV 1hs6A 430 :SYFKDKVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25313 # 1i60A.67.122 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 67 :NYMKDYRAV 1i60A 123 :DVLTELSDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25314 # 1zk8A.67.117 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 67 :NYMKDYRAV 1zk8A 118 :GIVKLCLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25315 # 1b5l.67.121 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 67 :NYMKDYRAV 1b5l 122 :KYFQGIYDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25316 # 1p4cA.67.327 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 67 :NYMKDYRAV 1p4cA 328 :LLKADIDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25317 # 1fkmA.67.62 read from T0287.t06.many.frag # found chain 1fkmA in template set T0287 67 :NYMKDYRAV 1fkmA 310 :RKRKEYRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25318 # 1mw9X.67.565 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 67 :NYMKDYRAV 1mw9X 566 :HFFSDFTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25319 # 1j5wA.67.226 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 67 :NYMKDYRAV 1j5wA 215 :EYEKEFYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25320 # 1uw4B.67.80 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 67 :NYMKDYRAV 1uw4B 848 :GVLEDIRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25321 # 1m48A.67.60 read from T0287.t06.many.frag # found chain 1m48A in template set Warning: unaligning (T0287)Y68 (1m48A)E62 because G (3-10) conformation "forbidden" or filtered. T0287 67 :N 1m48A 61 :E T0287 69 :MKDYRAV 1m48A 63 :LKPLEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25323 # 1ail.67.37 read from T0287.t06.many.frag # found chain 1ail in template set T0287 67 :NYMKDYRAV 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25324 # 1yacA.67.188 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 67 :NYMKDYRAV 1yacA 189 :NHIPDYRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25325 # 2f5xA.68.295 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 68 :YMKDYRAVI 2f5xA 284 :QVPQWAELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25326 # 1fjgI.68.87 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 68 :YMKDYRAVI 1fjgI 88 :YNPDYRAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25327 # 1wa5C.68.402 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 68 :YMKDYRAVI 1wa5C 403 :HMKGFVDQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25328 # 1fjgT.68.83 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 68 :YMKDYRAVI 1fjgT 84 :LMRKVRQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25329 # 1muwA.68.69 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 68 :YMKDYRAVI 1muwA 70 :HIKRFRQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25330 # 1bgf.68.108 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 68 :YMKDYRAVI 1bgf 108 :CLREERRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25331 # 1psrA.68.37 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 68 :YMKDYRAVI 1psrA 38 :NFPNFLSAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25332 # 2mhr.68.53 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 68 :YMKDYRAVI 2mhr 54 :HFTHEEAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25333 # 1dlwA.68.80 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 68 :YMKDYRAVI 1dlwA 81 :VIGHLRSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25334 # 1iuqA.68.39 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 68 :YMKDYRAVI 1iuqA 41 :LYQNYRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25335 # 1xp8A.68.188 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 68 :YMKDYRAVI 1xp8A 186 :ALRKLTAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25336 # 1eyqA.68.109 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 68 :YMKDYRAVI 1eyqA 110 :VMENCVAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25337 # 1hw1A.68.191 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 68 :YMKDYRAVI 1hw1A 192 :FYHKLSALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25338 # 1zc6A.68.234 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 68 :YMKDYRAVI 1zc6A 235 :AGEDAWAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25339 # 1txjA.68.93 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 68 :YMKDYRAVI 1txjA 94 :YMQKILKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25340 # 1yacA.68.189 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 68 :YMKDYRAVI 1yacA 190 :HIPDYRNLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25341 # 1hs6A.68.431 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 68 :YMKDYRAVI 1hs6A 431 :YFKDKVDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25342 # 1h7cA.68.73 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 68 :YMKDYRAVI 1h7cA 74 :AYLDLQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25343 # 1qoyA.68.228 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 68 :YMKDYRAVI 1qoyA 214 :KLKSVQNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25344 # 1yqyA.68.53 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 68 :YMKDYRAVI 1yqyA 311 :LSQEEKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25345 # 1a6m.68.137 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 68 :YMKDYRAVI 1a6m 138 :FRKDIAAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25346 # 1ail.68.38 read from T0287.t06.many.frag # found chain 1ail in template set T0287 68 :YMKDYRAVI 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25347 # 1i60A.68.123 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 68 :YMKDYRAVI 1i60A 124 :VLTELSDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25348 # 1p4cA.68.328 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 68 :YMKDYRAVI 1p4cA 329 :LKADIDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25349 # 1a8o.68.43 read from T0287.t06.many.frag # found chain 1a8o in training set Warning: unaligning (T0287)M69 (1a8o)N195 because P (beta_P) conformation "forbidden" or filtered. T0287 68 :Y 1a8o 194 :A T0287 70 :KDYRAVI 1a8o 196 :PDCKTIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25351 # 1zk8A.68.118 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 68 :YMKDYRAVI 1zk8A 119 :IVKLCLQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25352 # 1b5l.68.122 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 68 :YMKDYRAVI 1b5l 123 :YFQGIYDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25353 # 1cxqA.68.115 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 68 :YMKDYRAVI 1cxqA 163 :LKDKIRVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25354 # 2f6hX.68.76 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 68 :YMKDYRAVI 2f6hX 98 :VLTTIQKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25355 # 1uw4B.68.81 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 68 :YMKDYRAVI 1uw4B 849 :VLEDIRLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25356 # 2f5xA.69.296 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 69 :MKDYRAVIK 2f5xA 285 :VPQWAELFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25357 # 1fjgI.69.88 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 69 :MKDYRAVIK 1fjgI 89 :NPDYRAKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25358 # 2mhr.69.54 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 69 :MKDYRAVIK 2mhr 55 :FTHEEAMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25359 # 1fjgT.69.84 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 69 :MKDYRAVIK 1fjgT 85 :MRKVRQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25360 # 1iuqA.69.40 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 69 :MKDYRAVIK 1iuqA 42 :YQNYRNAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25361 # 1hw1A.69.192 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 69 :MKDYRAVIK 1hw1A 193 :YHKLSALCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25362 # 1dlwA.69.81 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 69 :MKDYRAVIK 1dlwA 82 :IGHLRSALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25363 # 1xp8A.69.189 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 69 :MKDYRAVIK 1xp8A 187 :LRKLTAILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25364 # 1muwA.69.70 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 69 :MKDYRAVIK 1muwA 71 :IKRFRQALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25365 # 1eyqA.69.110 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 69 :MKDYRAVIK 1eyqA 111 :MENCVAHLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25366 # 1psrA.69.38 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 69 :MKDYRAVIK 1psrA 39 :FPNFLSACD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25367 # 1bgf.69.109 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 69 :MKDYRAVIK 1bgf 109 :LREERRILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25368 # 1yqyA.69.54 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 69 :MKDYRAVIK 1yqyA 312 :SQEEKELLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25369 # 1wa5C.69.403 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 69 :MKDYRAVIK 1wa5C 404 :MKGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25370 # 1bxyA.69.15 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 69 :MKDYRAVIK 1bxyA 16 :PKDQKAALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25371 # 1eexA.69.415 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 69 :MKDYRAVIK 1eexA 416 :ARALQAVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25372 # 1i60A.69.124 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 69 :MKDYRAVIK 1i60A 125 :LTELSDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25373 # 2f6hX.69.77 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 69 :MKDYRAVIK 2f6hX 99 :LTTIQKVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25374 # 1cxqA.69.116 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 69 :MKDYRAVIK 1cxqA 164 :KDKIRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25375 # 1zk8A.69.119 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 69 :MKDYRAVIK 1zk8A 120 :VKLCLQVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25376 # 1ajsA.69.333 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 69 :MKDYRAVIK 1ajsA 334 :RSELRARLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25377 # 1t0fA.69.197 read from T0287.t06.many.frag # found chain 1t0fA in template set T0287 69 :MKDYRAVIK 1t0fA 195 :LSPLAHILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25378 # 1a8o.69.44 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 69 :MKDYRAVIK 1a8o 195 :NPDCKTILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25379 # 1zc6A.69.235 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 69 :MKDYRAVIK 1zc6A 236 :GEDAWAIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25380 # 1yacA.69.190 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 69 :MKDYRAVIK 1yacA 191 :IPDYRNLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25381 # 1txjA.69.94 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 69 :MKDYRAVIK 1txjA 95 :MQKILKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25382 # 1b5l.69.123 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 69 :MKDYRAVIK 1b5l 124 :FQGIYDYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25383 # 1p4cA.69.329 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 69 :MKDYRAVIK 1p4cA 330 :KADIDRTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25384 # 8abp.69.117 read from T0287.t06.many.frag # found chain 8abp in training set T0287 69 :MKDYRAVIK 8abp 118 :GQELYKEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25385 # 2f22A.69.119 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 69 :MKDYRAVIK 2f22A 119 :QGQYYVALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25386 # 2f5xA.70.297 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 70 :KDYRAVIKS 2f5xA 286 :PQWAELFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25387 # 2mhr.70.55 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 70 :KDYRAVIKS 2mhr 56 :THEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25388 # 1fjgT.70.85 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 70 :KDYRAVIKS 1fjgT 86 :RKVRQLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25389 # 1dlwA.70.82 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 70 :KDYRAVIKS 1dlwA 83 :GHLRSALTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25390 # 1eyqA.70.111 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 70 :KDYRAVIKS 1eyqA 112 :ENCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25391 # 1hw1A.70.193 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 70 :KDYRAVIKS 1hw1A 194 :HKLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25392 # 1eexA.70.416 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 70 :KDYRAVIKS 1eexA 417 :RALQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25393 # 1iuqA.70.41 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 70 :KDYRAVIKS 1iuqA 43 :QNYRNAVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25394 # 1xp8A.70.190 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 70 :KDYRAVIKS 1xp8A 188 :RKLTAILSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25395 # 1yqyA.70.55 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 70 :KDYRAVIKS 1yqyA 313 :QEEKELLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25396 # 1fjgI.70.89 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 70 :KDYRAVIKS 1fjgI 90 :PDYRAKLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25397 # 2f6hX.70.78 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 70 :KDYRAVIKS 2f6hX 100 :TTIQKVVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25398 # 1bgf.70.110 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 70 :KDYRAVIKS 1bgf 110 :REERRILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25399 # 1psrA.70.39 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 70 :KDYRAVIKS 1psrA 40 :PNFLSACDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25400 # 1bxyA.70.16 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 70 :KDYRAVIKS 1bxyA 17 :KDQKAALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25401 # 1muwA.70.71 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 70 :KDYRAVIKS 1muwA 72 :KRFRQALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25402 # 1cxqA.70.117 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 70 :KDYRAVIKS 1cxqA 165 :DKIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25403 # 1a8o.70.45 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 70 :KDYRAVIKS 1a8o 196 :PDCKTILKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25404 # 1y0zA.70.74 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 70 :KDYRAVIKS 1y0zA 75 :DDFNDVVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25405 # 1t0fA.70.198 read from T0287.t06.many.frag # found chain 1t0fA in template set T0287 70 :KDYRAVIKS 1t0fA 196 :SPLAHILQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25406 # 1p4cA.70.330 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 70 :KDYRAVIKS 1p4cA 331 :ADIDRTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25407 # 2f22A.70.120 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 70 :KDYRAVIKS 2f22A 120 :GQYYVALKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25408 # 1zk8A.70.120 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 70 :KDYRAVIKS 1zk8A 121 :KLCLQVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25409 # 1i60A.70.125 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 70 :KDYRAVIKS 1i60A 126 :TELSDIAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25410 # 1wa5C.70.404 read from T0287.t06.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wa5C)N418 T0287 70 :KDYRAVIK 1wa5C 405 :KGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25411 # 1b5l.70.124 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 70 :KDYRAVIKS 1b5l 125 :QGIYDYLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25412 # 1pa7A.70.75 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 70 :KDYRAVIKS 1pa7A 76 :KILQAGFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25413 # 1mn8A.70.17 read from T0287.t06.many.frag # found chain 1mn8A in training set T0287 70 :KDYRAVIKS 1mn8A 17 :KDVERIAHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25414 # 8abp.70.118 read from T0287.t06.many.frag # found chain 8abp in training set T0287 70 :KDYRAVIKS 8abp 119 :QELYKEMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25415 # 1y2qA.70.61 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 70 :KDYRAVIKS 1y2qA 62 :EEISKVAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25416 # 2f5xA.71.298 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 71 :DYRAVIKSI 2f5xA 287 :QWAELFKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25417 # 1fjgT.71.86 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 71 :DYRAVIKSI 1fjgT 87 :KVRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25418 # 2mhr.71.56 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 T0287 71 :DYRAVIKS 2mhr 57 :HEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25419 # 1yqyA.71.56 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 71 :DYRAVIKSI 1yqyA 314 :EEKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25420 # 1eyqA.71.112 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 71 :DYRAVIKSI 1eyqA 113 :NCVAHLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25421 # 1hw1A.71.194 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 71 :DYRAVIKSI 1hw1A 195 :KLSALCSEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25422 # 1iuqA.71.42 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 71 :DYRAVIKSI 1iuqA 44 :NYRNAVIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=25423 # 1xp8A.71.191 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 71 :DYRAVIKSI 1xp8A 189 :KLTAILSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25424 # 1dlwA.71.83 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 71 :DYRAVIKSI 1dlwA 84 :HLRSALTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25425 # 1bxyA.71.17 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 71 :DYRAVIKSI 1bxyA 18 :DQKAALKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25426 # 2f6hX.71.79 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 71 :DYRAVIKSI 2f6hX 101 :TIQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25427 # 1eexA.71.417 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 71 :DYRAVIKSI 1eexA 418 :ALQAVFAGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25428 # 1a8o.71.46 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 71 :DYRAVIKSI 1a8o 197 :DCKTILKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25429 # 1psrA.71.40 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 71 :DYRAVIKSI 1psrA 41 :NFLSACDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25430 # 1t0fA.71.199 read from T0287.t06.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)I79 (1t0fA)K205 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1t0fA 197 :PLAHILQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=25431 # 1y0zA.71.75 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 71 :DYRAVIKSI 1y0zA 76 :DFNDVVEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25432 # 2f22A.71.121 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 71 :DYRAVIKSI 2f22A 121 :QYYVALKQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25433 # 1y2qA.71.62 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 71 :DYRAVIKSI 1y2qA 63 :EISKVAEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25434 # 1p4cA.71.331 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 71 :DYRAVIKSI 1p4cA 332 :DIDRTLAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25435 # 1i60A.71.126 read from T0287.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)I79 (1i60A)Y135 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1i60A 127 :ELSDIAEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=25436 # 1fjgI.71.90 read from T0287.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)I79 (1fjgI)L99 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1fjgI 91 :DYRAKLKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=25437 # 1ajsA.71.335 read from T0287.t06.many.frag # found chain 1ajsA in training set Warning: unaligning (T0287)I79 (1ajsA)L344 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1ajsA 336 :ELRARLEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25438 # 1bgf.71.111 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 71 :DYRAVIKSI 1bgf 111 :EERRILAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25439 # 1pa7A.71.76 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 71 :DYRAVIKSI 1pa7A 77 :ILQAGFKRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25440 # 1muwA.71.72 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 71 :DYRAVIKSI 1muwA 73 :RFRQALDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25441 # 1cxqA.71.118 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 71 :DYRAVIKSI 1cxqA 166 :KIRVLAEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25442 # 1rcwA.71.183 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 71 :DYRAVIKSI 1rcwA 184 :EEKALIEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=25443 # 1mn8A.71.18 read from T0287.t06.many.frag # found chain 1mn8A in training set T0287 71 :DYRAVIKSI 1mn8A 18 :DVERIAHNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25444 # 8abp.71.119 read from T0287.t06.many.frag # found chain 8abp in training set T0287 71 :DYRAVIKSI 8abp 120 :ELYKEMQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25445 # 2ajtA.71.212 read from T0287.t06.many.frag # found chain 2ajtA in template set T0287 71 :DYRAVIKSI 2ajtA 213 :DLVQVVNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25446 # 2f5xA.72.299 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 72 :YRAVIKSIG 2f5xA 288 :WAELFKKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25447 # 1fjgT.72.87 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 72 :YRAVIKSIG 1fjgT 88 :VRQLLEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25448 # 1yqyA.72.57 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 72 :YRAVIKSIG 1yqyA 315 :EKELLKRIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25449 # 2mhr.72.57 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 72 :YRAVIKS 2mhr 58 :EEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25450 # 1eyqA.72.113 read from T0287.t06.many.frag # found chain 1eyqA in template set Warning: unaligning (T0287)I79 (1eyqA)V121 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1eyqA 114 :CVAHLKS T0287 80 :G 1eyqA 122 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25452 # 1bxyA.72.18 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 72 :YRAVIKSIG 1bxyA 19 :QKAALKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25453 # 1eexA.72.418 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 72 :YRAVIKSIG 1eexA 419 :LQAVFAGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25454 # 1y0zA.72.76 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 72 :YRAVIKSIG 1y0zA 77 :FNDVVEAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25455 # 1y2qA.72.63 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 72 :YRAVIKSIG 1y2qA 64 :ISKVAEQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25456 # 1xp8A.72.192 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 72 :YRAVIKSIG 1xp8A 190 :LTAILSKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25457 # 1hw1A.72.195 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 72 :YRAVIKSIG 1hw1A 196 :LSALCSEGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25458 # 1iuqA.72.43 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 72 :YRAVIKSIG 1iuqA 45 :YRNAVIESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25459 # 1dlwA.72.84 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 72 :YRAVIKSIG 1dlwA 85 :LRSALTGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25460 # 1t0fA.72.200 read from T0287.t06.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)I79 (1t0fA)K205 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1t0fA 198 :LAHILQE T0287 80 :G 1t0fA 206 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25462 # 2f22A.72.122 read from T0287.t06.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 2f22A 122 :YYVALKQ T0287 80 :G 2f22A 130 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25464 # 2f6hX.72.80 read from T0287.t06.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 2f6hX 102 :IQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25465 # 1a8o.72.47 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 72 :YRAVIKSIG 1a8o 198 :CKTILKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25466 # 1psrA.72.41 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 72 :YRAVIKSIG 1psrA 42 :FLSACDKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25467 # 1cxqA.72.119 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 72 :YRAVIKSIG 1cxqA 167 :IRVLAEGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25468 # 1pa7A.72.77 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 72 :YRAVIKSIG 1pa7A 78 :LQAGFKRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25469 # 1k3yA.72.134 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 T0287 72 :YRAVIKSI 1k3yA 136 :FEKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=25470 # 1p4cA.72.332 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 72 :YRAVIKSIG 1p4cA 333 :IDRTLAQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25471 # 1ve4A.72.18 read from T0287.t06.many.frag # found chain 1ve4A in template set T0287 72 :YRAVIKSIG 1ve4A 19 :AYEVLKRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25472 # 2bu3A.72.138 read from T0287.t06.many.frag # found chain 2bu3A in template set T0287 72 :YRAVIKSIG 2bu3A 128 :LGRLIASYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25473 # 1rcwA.72.184 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 72 :YRAVIKSIG 1rcwA 185 :EKALIEMLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25474 # 1s1dA.72.195 read from T0287.t06.many.frag # found chain 1s1dA in training set T0287 72 :YRAVIKSIG 1s1dA 196 :YNALRAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25475 # 2ajtA.72.213 read from T0287.t06.many.frag # found chain 2ajtA in template set Warning: unaligning (T0287)G80 (2ajtA)S222 because P (beta_P) conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 2ajtA 214 :LVQVVNSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25476 # 1ajsA.72.336 read from T0287.t06.many.frag # found chain 1ajsA in training set Warning: unaligning (T0287)I79 (1ajsA)L344 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1ajsA 337 :LRARLEA T0287 80 :G 1ajsA 345 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=25478 # 1i60A.72.127 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 72 :YRAVIKSIG 1i60A 128 :LSDIAEPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25479 # 1f5mA.72.52 read from T0287.t06.many.frag # found chain 1f5mA in template set T0287 72 :YRAVIKSIG 1f5mA 53 :IWHAYKSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25480 # 2f5xA.73.300 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 73 :RAVIKSIGV 2f5xA 289 :AELFKKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25481 # 1yqyA.73.58 read from T0287.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 73 :RAVIKSI 1yqyA 316 :KELLKRI T0287 81 :V 1yqyA 324 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=25483 # 2mhr.73.58 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 73 :RAVIKS 2mhr 59 :EAMMDA T0287 81 :V 2mhr 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=25485 # 1fjgT.73.88 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 73 :RAVIKSIGV 1fjgT 89 :RQLLEAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25486 # 1bxyA.73.19 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 73 :RAVIKSIGV 1bxyA 20 :KAALKALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25487 # 1iuqA.73.44 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 73 :RAVIKSIGV 1iuqA 46 :RNAVIESGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25488 # 1hw1A.73.196 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1hw1A 197 :SALCSE T0287 80 :GV 1hw1A 204 :AH Number of specific fragments extracted= 2 number of extra gaps= 1 total=25490 # 1eexA.73.419 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 73 :RAVIKSIGV 1eexA 420 :QAVFAGMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25491 # 1psrA.73.42 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 73 :RAVIKSIGV 1psrA 43 :LSACDKKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25492 # 1t0fA.73.201 read from T0287.t06.many.frag # found chain 1t0fA in template set T0287 73 :RAVIKSIGV 1t0fA 199 :AHILQEKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25493 # 1y0zA.73.77 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 73 :RAVIKSIGV 1y0zA 78 :NDVVEAFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25494 # 1eyqA.73.114 read from T0287.t06.many.frag # found chain 1eyqA in template set Warning: unaligning (T0287)I79 (1eyqA)V121 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1eyqA 115 :VAHLKS T0287 80 :GV 1eyqA 122 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25496 # 2f6hX.73.81 read from T0287.t06.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)V81 (2f6hX)G111 because S (epsilon) conformation "forbidden" or filtered. T0287 73 :RAVIKSI 2f6hX 103 :QKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25497 # 1y2qA.73.64 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 73 :RAVIKSIGV 1y2qA 65 :SKVAEQVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25498 # 1dlwA.73.85 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 73 :RAVIKSIGV 1dlwA 86 :RSALTGAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25499 # 1xp8A.73.193 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 73 :RAVIKSIGV 1xp8A 191 :TAILSKTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25500 # 2f22A.73.123 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 73 :RAVIKSIGV 2f22A 123 :YVALKQSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25501 # 1pa7A.73.78 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 73 :RAVIKSIGV 1pa7A 79 :QAGFKRMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25502 # 1ve4A.73.19 read from T0287.t06.many.frag # found chain 1ve4A in template set T0287 73 :RAVIKSIGV 1ve4A 20 :YEVLKRAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25503 # 1f5mA.73.53 read from T0287.t06.many.frag # found chain 1f5mA in template set T0287 73 :RAVIKSIGV 1f5mA 54 :WHAYKSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25504 # 1a8o.73.48 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 73 :RAVIKSIGV 1a8o 199 :KTILKALGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25505 # 1cxqA.73.120 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 73 :RAVIKSIGV 1cxqA 168 :RVLAEGDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25506 # 1k3yA.73.135 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 73 :RAVIKSI 1k3yA 137 :EKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=25507 # 1v4vA.73.83 read from T0287.t06.many.frag # found chain 1v4vA in training set T0287 73 :RAVIKSIGV 1v4vA 84 :ARALKEMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25508 # 2bu3A.73.139 read from T0287.t06.many.frag # found chain 2bu3A in template set T0287 73 :RAVIKSIGV 2bu3A 129 :GRLIASYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25509 # 1p4cA.73.333 read from T0287.t06.many.frag # found chain 1p4cA in training set Warning: unaligning (T0287)I79 (1p4cA)I340 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1p4cA 334 :DRTLAQ T0287 80 :GV 1p4cA 341 :GC Number of specific fragments extracted= 2 number of extra gaps= 1 total=25511 # 1smbA.73.17 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 73 :RAVIKSIGV 1smbA 18 :NEYRQKHGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25512 # 1s1dA.73.196 read from T0287.t06.many.frag # found chain 1s1dA in training set T0287 73 :RAVIKSIGV 1s1dA 197 :NALRAAAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25513 # 2f8lA.73.70 read from T0287.t06.many.frag # found chain 2f8lA in template set T0287 73 :RAVIKSIGV 2f8lA 59 :QASYESIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25514 # 1yviA.73.82 read from T0287.t06.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)I79 (1yviA)V89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 T0287 73 :RAVIKS 1yviA 83 :KGSSAS T0287 80 :G 1yviA 90 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=25516 # 1pa7A.74.79 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 74 :AVIKSIGVD 1pa7A 80 :AGFKRMGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25517 # 2f5xA.74.301 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 74 :AVIKSIGVD 2f5xA 290 :ELFKKAGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25518 # 1iuqA.74.45 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 74 :AVIKSIGVD 1iuqA 47 :NAVIESGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25519 # 2mhr.74.59 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 74 :AVIKS 2mhr 60 :AMMDA T0287 81 :VD 2mhr 67 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25521 # 1smbA.74.18 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 74 :AVIKSIGVD 1smbA 19 :EYRQKHGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25522 # 1bxyA.74.20 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 74 :AVIKSIGVD 1bxyA 21 :AALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25523 # 1y0zA.74.78 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 74 :AVIKSIGVD 1y0zA 79 :DVVEAFGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25524 # 1eexA.74.420 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 74 :AVIKSIGVD 1eexA 421 :AVFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25525 # 1psrA.74.43 read from T0287.t06.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1psrA 44 :SACDK T0287 80 :GVD 1psrA 50 :GTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25527 # 1f5mA.74.54 read from T0287.t06.many.frag # found chain 1f5mA in template set T0287 74 :AVIKSIGVD 1f5mA 55 :HAYKSLAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25528 # 1yqyA.74.59 read from T0287.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 74 :AVIKSI 1yqyA 317 :ELLKRI T0287 81 :VD 1yqyA 324 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=25530 # 1fjgT.74.89 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 74 :AVIKSIGVD 1fjgT 90 :QLLEAAGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25531 # 2f22A.74.124 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 74 :AVIKSIGVD 2f22A 124 :VALKQSGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25532 # 1t0fA.74.202 read from T0287.t06.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)I79 (1t0fA)K205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1t0fA)E208 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKS 1t0fA 200 :HILQE T0287 80 :GV 1t0fA 206 :GD Number of specific fragments extracted= 2 number of extra gaps= 2 total=25534 # 1z3eB.74.21 read from T0287.t06.many.frag # found chain 1z3eB in template set T0287 74 :AVIKSIGVD 1z3eB 264 :NCLKRAGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25535 # 1w0hA.74.160 read from T0287.t06.many.frag # found chain 1w0hA in training set T0287 74 :AVIKSIGVD 1w0hA 279 :IMLEKLGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25536 # 1q0uA.74.16 read from T0287.t06.many.frag # found chain 1q0uA in template set T0287 74 :AVIKSIGVD 1q0uA 17 :EAIKTLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25537 # 1eyqA.74.115 read from T0287.t06.many.frag # found chain 1eyqA in template set Warning: unaligning (T0287)I79 (1eyqA)V121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1eyqA)Y124 because D (zeta) conformation "forbidden" or filtered. T0287 74 :AVIKS 1eyqA 116 :AHLKS T0287 80 :GV 1eyqA 122 :GT Number of specific fragments extracted= 2 number of extra gaps= 2 total=25539 # 1ve4A.74.20 read from T0287.t06.many.frag # found chain 1ve4A in template set Warning: unaligning (T0287)I79 (1ve4A)A26 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1ve4A 21 :EVLKR T0287 80 :GVD 1ve4A 27 :GLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25541 # 1s1dA.74.197 read from T0287.t06.many.frag # found chain 1s1dA in training set T0287 74 :AVIKSIGVD 1s1dA 198 :ALRAAAGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25542 # 1k3yA.74.136 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)I79 (1k3yA)H143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 74 :AVIKS 1k3yA 138 :KVLKS T0287 82 :D 1k3yA 146 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=25544 # 1y2qA.74.65 read from T0287.t06.many.frag # found chain 1y2qA in template set Warning: unaligning (T0287)I79 (1y2qA)V71 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1y2qA 66 :KVAEQ T0287 80 :GVD 1y2qA 72 :KAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25546 # 1hw1A.74.197 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKS 1hw1A 198 :ALCSE T0287 81 :VD 1hw1A 205 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25548 # 1tqgA.74.49 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 74 :AVIKSIGVD 1tqgA 49 :GMAGTMGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25549 # 2f8lA.74.71 read from T0287.t06.many.frag # found chain 2f8lA in template set T0287 74 :AVIKSIGVD 2f8lA 60 :ASYESIELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25550 # 2fokA.74.329 read from T0287.t06.many.frag # found chain 2fokA in template set T0287 74 :AVIKSIGVD 2fokA 330 :DNLKKLGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25551 # 1p4cA.74.334 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 74 :AVIKSIGVD 1p4cA 335 :RTLAQIGCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25552 # 8abp.74.122 read from T0287.t06.many.frag # found chain 8abp in training set T0287 74 :AVIKSIGVD 8abp 123 :KEMQKRGWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25553 # 2f6hX.74.82 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 74 :AVIKSIGVD 2f6hX 104 :KVVTQLKGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25554 # 1a62.74.15 read from T0287.t06.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1a62 16 :TLGENMGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25555 # 1pa7A.75.80 read from T0287.t06.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)I79 (1pa7A)M85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1pa7A)K89 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKS 1pa7A 81 :GFKR T0287 80 :GVD 1pa7A 86 :GVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=25557 # 1smbA.75.19 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 75 :VIKSIGVDK 1smbA 20 :YRQKHGVPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25558 # 1iuqA.75.46 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 75 :VIKSIGVDK 1iuqA 48 :AVIESGNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25559 # 1psrA.75.44 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 75 :VIKSIGVDK 1psrA 45 :ACDKKGTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25560 # 1y0zA.75.79 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 75 :VIKSIGVDK 1y0zA 80 :VVEAFGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25561 # 1iirA.75.172 read from T0287.t06.many.frag # found chain 1iirA in training set T0287 75 :VIKSIGVDK 1iirA 173 :HRDAIGLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25562 # 2f5xA.75.302 read from T0287.t06.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)D82 (2f5xA)E298 because E (beta_S) conformation "forbidden" or filtered. T0287 75 :VIKSIGV 2f5xA 291 :LFKKAGV T0287 83 :K 2f5xA 299 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=25564 # 1z3eB.75.22 read from T0287.t06.many.frag # found chain 1z3eB in template set T0287 75 :VIKSIGVDK 1z3eB 265 :CLKRAGINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25565 # 2f22A.75.125 read from T0287.t06.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)K83 (2f22A)L133 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 2f22A 125 :ALKQSGIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=25566 # 2fokA.75.330 read from T0287.t06.many.frag # found chain 2fokA in template set T0287 75 :VIKSIGVDK 2fokA 331 :NLKKLGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25567 # 1tqgA.75.50 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 75 :VIKSIGVDK 1tqgA 50 :MAGTMGFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25568 # 1uocA.75.231 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 75 :VIKSIGVDK 1uocA 232 :LADELGLPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25569 # 2mhr.75.60 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 75 :VIKS 2mhr 61 :MMDA T0287 81 :VDK 2mhr 67 :YSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25571 # 1c1kA.75.122 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 75 :VIKSIGVDK 1c1kA 123 :FSKKVEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25572 # 1kr7A.75.89 read from T0287.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1kr7A 89 :ACSAHGAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=25573 # 1eexA.75.421 read from T0287.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1eexA)I431 T0287 75 :VIKSIGVD 1eexA 422 :VFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=25574 # 1bxyA.75.21 read from T0287.t06.many.frag # found chain 1bxyA in template set Warning: unaligning (T0287)K83 (1bxyA)R30 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1bxyA 22 :ALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25575 # 1wu7A.75.247 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1wu7A 248 :LLASYGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25576 # 1q0uA.75.17 read from T0287.t06.many.frag # found chain 1q0uA in template set T0287 75 :VIKSIGVDK 1q0uA 18 :AIKTLRFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25577 # 2ar0A.75.75 read from T0287.t06.many.frag # found chain 2ar0A in template set T0287 75 :VIKSIGVDK 2ar0A 76 :MLVHLGEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25578 # 1bc5A.75.41 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 75 :VIKSIGVDK 1bc5A 57 :RLRALGLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25579 # 1w0hA.75.161 read from T0287.t06.many.frag # found chain 1w0hA in training set T0287 75 :VIKSIGVDK 1w0hA 280 :MLEKLGMDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25580 # 1hw1A.75.198 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKS 1hw1A 199 :LCSE T0287 80 :GVDK 1hw1A 204 :AHDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25582 # 2f8lA.75.72 read from T0287.t06.many.frag # found chain 2f8lA in template set T0287 75 :VIKSIGVDK 2f8lA 61 :SYESIELEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25583 # 1ejbA.75.40 read from T0287.t06.many.frag # found chain 1ejbA in template set T0287 75 :VIKSIGVDK 1ejbA 41 :RMASLGVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25584 # 1f5mA.75.55 read from T0287.t06.many.frag # found chain 1f5mA in template set T0287 75 :VIKSIGVDK 1f5mA 56 :AYKSLAVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25585 # 2cx1A.75.81 read from T0287.t06.many.frag # found chain 2cx1A in template set T0287 75 :VIKSIGVDK 2cx1A 81 :CLKAFGVDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25586 # 1wteA.75.42 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1wteA 43 :IFDYHSLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=25587 # 8abp.75.123 read from T0287.t06.many.frag # found chain 8abp in training set T0287 75 :VIKSIGVDK 8abp 124 :EMQKRGWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25588 # 1p4cA.75.335 read from T0287.t06.many.frag # found chain 1p4cA in training set Warning: unaligning (T0287)I79 (1p4cA)I340 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1p4cA 336 :TLAQ T0287 80 :GVDK 1p4cA 341 :GCPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25590 # 1iuqA.76.47 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 76 :IKSIGVDKF 1iuqA 49 :VIESGNPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25591 # 1iirA.76.173 read from T0287.t06.many.frag # found chain 1iirA in training set T0287 76 :IKSIGVDKF 1iirA 174 :RDAIGLPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25592 # 1smbA.76.20 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 76 :IKSIGVDKF 1smbA 21 :RQKHGVPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25593 # 1kr7A.76.90 read from T0287.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)I79 (1kr7A)H93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F84 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1kr7A 90 :CSA T0287 80 :GVDK 1kr7A 94 :GAPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=25595 # 1psrA.76.45 read from T0287.t06.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)D82 (1psrA)N52 because N (gamma') conformation "forbidden" or filtered. T0287 76 :IKSIGV 1psrA 46 :CDKKGT T0287 83 :KF 1psrA 53 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25597 # 1pa7A.76.81 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 76 :IKSIGVDKF 1pa7A 82 :FKRMGVDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25598 # 1bc5A.76.42 read from T0287.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)K83 (1bc5A)D65 because E (beta_S) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1bc5A 58 :LRALGLD T0287 84 :F 1bc5A 66 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=25600 # 1z3eB.76.23 read from T0287.t06.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)K83 (1z3eB)T273 because E (beta_S) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1z3eB 266 :LKRAGIN T0287 84 :F 1z3eB 274 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=25602 # 2ar0A.76.76 read from T0287.t06.many.frag # found chain 2ar0A in template set T0287 76 :IKSIGVDKF 2ar0A 77 :LVHLGEDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25603 # 2f22A.76.126 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 76 :IKSIGVDKF 2f22A 126 :LKQSGINLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25604 # 1k8kG.76.82 read from T0287.t06.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSI 1k8kG 83 :LISF T0287 81 :VDKF 1k8kG 88 :ANDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25606 # 1tqgA.76.51 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 76 :IKSIGVDKF 1tqgA 51 :AGTMGFSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25607 # 2fokA.76.331 read from T0287.t06.many.frag # found chain 2fokA in template set T0287 76 :IKSIGVDKF 2fokA 332 :LKKLGFDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25608 # 1c1kA.76.123 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 76 :IKSIGVDKF 1c1kA 124 :SKKVEVSAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25609 # 1uocA.76.232 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 76 :IKSIGVDKF 1uocA 233 :ADELGLPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25610 # 1y0zA.76.80 read from T0287.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0287)K83 (1y0zA)E88 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1y0zA 81 :VEAFGFD T0287 84 :F 1y0zA 89 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=25612 # 1wteA.76.43 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1wteA 44 :FDYHSLN T0287 84 :F 1wteA 52 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=25614 # 1ib2A.76.150 read from T0287.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1ib2A)S985 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKSI 1ib2A 978 :IECV T0287 81 :VD 1ib2A 983 :PQ T0287 84 :F 1ib2A 986 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=25617 # 1ejbA.76.41 read from T0287.t06.many.frag # found chain 1ejbA in template set Warning: unaligning (T0287)D82 (1ejbA)E48 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1ejbA 42 :MASLGV T0287 83 :KF 1ejbA 49 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25619 # 2f5xA.76.303 read from T0287.t06.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)F84 because last residue in template chain is (2f5xA)Q300 T0287 76 :IKSIGVDK 2f5xA 292 :FKKAGVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25620 # 1wu7A.76.248 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1wu7A 249 :LASYGVK T0287 84 :F 1wu7A 257 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=25622 # 1usgA.76.290 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 76 :IKSIGVDKF 1usgA 291 :LERTGSDEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25623 # 2f8lA.76.73 read from T0287.t06.many.frag # found chain 2f8lA in template set T0287 76 :IKSIGVDKF 2f8lA 62 :YESIELENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25624 # 1hw1A.76.199 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKS 1hw1A 200 :CSE T0287 81 :VDKF 1hw1A 205 :HDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25626 # 2c5uA.76.329 read from T0287.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)I79 (2c5uA)A332 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 2c5uA 329 :AKG T0287 80 :GVDKF 2c5uA 333 :GMDHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25628 # 1rp4A.76.271 read from T0287.t06.many.frag # found chain 1rp4A in template set Warning: unaligning (T0287)G80 (1rp4A)D314 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSI 1rp4A 310 :ISQL T0287 81 :VDKF 1rp4A 315 :TKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25630 # 1oqjA.76.48 read from T0287.t06.many.frag # found chain 1oqjA in training set T0287 76 :IKSIGVDKF 1oqjA 134 :VHLAGKSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25631 # 2cx1A.76.82 read from T0287.t06.many.frag # found chain 2cx1A in template set Warning: unaligning (T0287)I79 (2cx1A)F85 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 2cx1A 82 :LKA T0287 80 :GVDKF 2cx1A 86 :GVDWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25633 # 1ojrA.76.259 read from T0287.t06.many.frag # found chain 1ojrA in training set T0287 76 :IKSIGVDKF 1ojrA 260 :GKRFGVTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25634 # 1a62.76.17 read from T0287.t06.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1a62 18 :GENMGL T0287 84 :F 1a62 26 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=25636 # 1iuqA.77.48 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 77 :KSIGVDKFK 1iuqA 50 :IESGNPKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25637 # 1iirA.77.174 read from T0287.t06.many.frag # found chain 1iirA in training set T0287 77 :KSIGVDKFK 1iirA 175 :DAIGLPPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25638 # 1k8kG.77.83 read from T0287.t06.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1k8kG 84 :ISF T0287 81 :VDKFK 1k8kG 88 :ANDIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25640 # 1bc5A.77.43 read from T0287.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1bc5A 59 :RA T0287 80 :GVDKFK 1bc5A 62 :GLDDFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25642 # 1kr7A.77.91 read from T0287.t06.many.frag # found chain 1kr7A in training set T0287 77 :KSIGVDKFK 1kr7A 91 :SAHGAPDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25643 # 1smbA.77.21 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 77 :KSIGVDKFK 1smbA 22 :QKHGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25644 # 1hw1A.77.200 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KS 1hw1A 201 :SE T0287 81 :VDKFK 1hw1A 205 :HDQVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25646 # 1tqgA.77.52 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 77 :KSIGVDKFK 1tqgA 52 :GTMGFSSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25647 # 1wteA.77.44 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KS 1wteA 45 :DY T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FK 1wteA 52 :FD Number of specific fragments extracted= 3 number of extra gaps= 2 total=25650 # 1z3eB.77.24 read from T0287.t06.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1z3eB 267 :KR T0287 80 :GVDKFK 1z3eB 270 :GINTVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25652 # 1pa7A.77.82 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 77 :KSIGVDKFK 1pa7A 83 :KRMGVDKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=25653 # 1ib2A.77.151 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 77 :KSIGVDKFK 1ib2A 979 :ECVQPQSLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25654 # 1psrA.77.46 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 77 :KSIGVDKFK 1psrA 47 :DKKGTNYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25655 # 1c1kA.77.124 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 77 :KSIGVDKFK 1c1kA 125 :KKVEVSAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25656 # 2f22A.77.127 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 77 :KSIGVDKFK 2f22A 127 :KQSGINLPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25657 # 1uocA.77.233 read from T0287.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)I79 (1uocA)L236 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1uocA 234 :DE T0287 80 :GVDKFK 1uocA 237 :GLPRFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25659 # 2ar0A.77.77 read from T0287.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0287)D82 (2ar0A)D83 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KSIGV 2ar0A 78 :VHLGE T0287 83 :KFK 2ar0A 84 :DKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25661 # 2c5uA.77.330 read from T0287.t06.many.frag # found chain 2c5uA in template set T0287 77 :KSIGVDKFK 2c5uA 330 :KGAGMDHLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25662 # 2f8lA.77.74 read from T0287.t06.many.frag # found chain 2f8lA in template set T0287 77 :KSIGVDKFK 2f8lA 63 :ESIELENFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25663 # 1usgA.77.291 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 77 :KSIGVDKFK 1usgA 292 :ERTGSDEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25664 # 2fokA.77.332 read from T0287.t06.many.frag # found chain 2fokA in template set T0287 77 :KSIGVDKFK 2fokA 333 :KKLGFDEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25665 # 1wu7A.77.249 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 77 :KSIGVDKFK 1wu7A 250 :ASYGVKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25666 # 1ezwA.77.275 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 77 :KSIGV 1ezwA 276 :EAIGK T0287 83 :KFK 1ezwA 282 :DFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25668 # 1oqjA.77.49 read from T0287.t06.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)V81 (1oqjA)K139 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSIG 1oqjA 135 :HLAG T0287 82 :DKFK 1oqjA 140 :STLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25670 # 1jy1A.77.183 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 77 :KSIGVDKFK 1jy1A 328 :TAYNAPSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25671 # 1h6gA.77.154 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 77 :KSIGVDKFK 1h6gA 531 :QEKDVDGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25672 # 1a62.77.18 read from T0287.t06.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)I79 (1a62)M21 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1a62 19 :EN T0287 80 :GVDKFK 1a62 22 :GLENLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25674 # 1yviA.77.86 read from T0287.t06.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)I79 (1yviA)V89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1yviA)Q92 T0287 77 :KS 1yviA 87 :AS T0287 80 :G 1yviA 90 :G T0287 83 :KFK 1yviA 93 :KVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=25677 # 1q9uA.77.103 read from T0287.t06.many.frag # found chain 1q9uA in training set T0287 77 :KSIGVDKFK 1q9uA 101 :GMMNDPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25678 # 1sedA.77.62 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 77 :KSIGVDKFK 1sedA 61 :KAQGFVTFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25679 # 1k8kG.78.84 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 78 :SIGVDKFKK 1k8kG 85 :SFKANDIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25680 # 1bc5A.78.44 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 78 :SIGVDKFKK 1bc5A 60 :ALGLDDFGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25681 # 1iuqA.78.49 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 78 :SIGVDKFKK 1iuqA 51 :ESGNPKADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25682 # 1wteA.78.45 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 78 :SIGVD 1wteA 46 :YHSLN T0287 84 :FKK 1wteA 52 :FDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25684 # 1hw1A.78.201 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SI 1hw1A 202 :EG T0287 81 :VDKFKK 1hw1A 205 :HDQVYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25686 # 1kr7A.78.92 read from T0287.t06.many.frag # found chain 1kr7A in training set T0287 78 :SIGVDKFKK 1kr7A 92 :AHGAPDLGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25687 # 1iirA.78.175 read from T0287.t06.many.frag # found chain 1iirA in training set T0287 78 :SIGVDKFKK 1iirA 176 :AIGLPPVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=25688 # 1ib2A.78.152 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 78 :SIGVDKFKK 1ib2A 980 :CVQPQSLQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25689 # 1tqgA.78.53 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 78 :SIGVDKFKK 1tqgA 53 :TMGFSSMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25690 # 1z3eB.78.25 read from T0287.t06.many.frag # found chain 1z3eB in template set T0287 78 :SIGVDKFKK 1z3eB 268 :RAGINTVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25691 # 1h6gA.78.155 read from T0287.t06.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 78 :S 1h6gA 532 :E T0287 80 :GVDKFKK 1h6gA 534 :DVDGLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25693 # 1c1kA.78.125 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 78 :SIGVDKFKK 1c1kA 126 :KVEVSAFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25694 # 1jy1A.78.184 read from T0287.t06.many.frag # found chain 1jy1A in training set Warning: unaligning (T0287)F84 (1jy1A)L335 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIGVDK 1jy1A 329 :AYNAPS T0287 85 :KK 1jy1A 336 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25696 # 1smbA.78.22 read from T0287.t06.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)I79 (1smbA)H24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K86 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0287 78 :S 1smbA 23 :K T0287 80 :GVDKFK 1smbA 25 :GVPPLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25698 # 1sedA.78.63 read from T0287.t06.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIGVDK 1sedA 62 :AQGFVT T0287 85 :KK 1sedA 69 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25700 # 2aeuA.78.252 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 78 :SIGVDKFKK 2aeuA 253 :NFNLERIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25701 # 2c5uA.78.331 read from T0287.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)V81 (2c5uA)M334 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIG 2c5uA 331 :GAG T0287 82 :DKFKK 2c5uA 335 :DHLFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25703 # 1ezwA.78.276 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIG 1ezwA 277 :AIG T0287 82 :DKFKK 1ezwA 281 :GDFGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25705 # 1u00A.78.186 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 78 :SIGVDKFKK 1u00A 575 :GDDVDAIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25706 # 1usgA.78.292 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 78 :SIGVDKFKK 1usgA 293 :RTGSDEPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25707 # 1psrA.78.47 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 78 :SIGVDKFKK 1psrA 48 :KKGTNYLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25708 # 1sqsA.78.217 read from T0287.t06.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 78 :SIGVD 1sqsA 218 :LFEAN T0287 84 :FKK 1sqsA 224 :LEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25710 # 1zhxA.78.329 read from T0287.t06.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)G80 (1zhxA)D328 because N (gamma') conformation "forbidden" or filtered. T0287 78 :SI 1zhxA 326 :LG T0287 81 :VDKFKK 1zhxA 329 :FNLIAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25712 # 1owlA.78.266 read from T0287.t06.many.frag # found chain 1owlA in training set Warning: unaligning (T0287)G80 (1owlA)R269 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SI 1owlA 267 :LS T0287 81 :VDKFKK 1owlA 270 :SDEARN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25714 # 2f22A.78.128 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 78 :SIGVDKFKK 2f22A 128 :QSGINLPKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25715 # 1lo7A.78.40 read from T0287.t06.many.frag # found chain 1lo7A in training set Warning: unaligning (T0287)D82 (1lo7A)P45 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 1lo7A 41 :KCGL T0287 83 :KFKK 1lo7A 46 :PWRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25717 # 2fbqA.78.121 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 78 :SIGVDKFKK 2fbqA 120 :SQSQGHLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25718 # 1uvjA.78.179 read from T0287.t06.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)V81 (1uvjA)Q183 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIG 1uvjA 180 :LML T0287 82 :DKFKK 1uvjA 184 :GKFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25720 # 1uocA.78.234 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 78 :SIGVDKFKK 1uocA 235 :ELGLPRFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25721 # 1q9uA.78.104 read from T0287.t06.many.frag # found chain 1q9uA in training set T0287 78 :SIGVDKFKK 1q9uA 102 :MMNDPALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25722 # 1bc5A.79.45 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 79 :IGVDKFKKV 1bc5A 61 :LGLDDFGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25723 # 1k8kG.79.85 read from T0287.t06.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 1k8kG 86 :F T0287 81 :VDKFKKV 1k8kG 88 :ANDIEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25725 # 1wteA.79.46 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 79 :IGVD 1wteA 47 :HSLN T0287 84 :FKKV 1wteA 52 :FDEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25727 # 1hw1A.79.202 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1hw1A 204 :AHDQVYET Number of specific fragments extracted= 1 number of extra gaps= 1 total=25728 # 1h6gA.79.156 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 79 :IGVDKFKKV 1h6gA 533 :KDVDGLDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25729 # 1sedA.79.64 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 79 :IGVDKFKKV 1sedA 63 :QGFVTFDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25730 # 1ib2A.79.153 read from T0287.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 1ib2A 981 :V T0287 81 :VDKFKKV 1ib2A 983 :PQSLQFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25732 # 1kr7A.79.93 read from T0287.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :IGVD 1kr7A 93 :HGAP T0287 84 :FKKV 1kr7A 98 :LGHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25734 # 1iuqA.79.50 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 79 :IGVDKFKKV 1iuqA 52 :SGNPKADEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25735 # 1iirA.79.176 read from T0287.t06.many.frag # found chain 1iirA in training set T0287 79 :IGVDKFKKV 1iirA 177 :IGLPPVEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25736 # 2aeuA.79.253 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 79 :IGVDKFKKV 2aeuA 254 :FNLERIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25737 # 1uvjA.79.180 read from T0287.t06.many.frag # found chain 1uvjA in template set T0287 79 :IGVDKFKKV 1uvjA 181 :MLQGKFDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25738 # 2fbqA.79.122 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 79 :IGVDKFKKV 2fbqA 121 :QSQGHLRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25739 # 1zhxA.79.330 read from T0287.t06.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)I79 (1zhxA)G327 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1zhxA)D328 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKV 1zhxA 329 :FNLIAKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=25740 # 1u00A.79.187 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 79 :IGVDKFKKV 1u00A 576 :DDVDAIEQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25741 # 1ezwA.79.277 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 79 :IGV 1ezwA 278 :IGK T0287 83 :KFKKV 1ezwA 282 :DFGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25743 # 2f6kA.79.131 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 79 :IGVDKFKKV 2f6kA 132 :FGSPVLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25744 # 1jy1A.79.185 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 79 :IGVDKFKKV 1jy1A 330 :YNAPSLKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25745 # 1z3eB.79.26 read from T0287.t06.many.frag # found chain 1z3eB in template set T0287 79 :IGVDKFKKV 1z3eB 269 :AGINTVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25746 # 1sqsA.79.218 read from T0287.t06.many.frag # found chain 1sqsA in training set T0287 79 :IGVDKFKKV 1sqsA 219 :FEANSLEEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25747 # 1owlA.79.267 read from T0287.t06.many.frag # found chain 1owlA in training set Warning: unaligning (T0287)G80 (1owlA)R269 because G (3-10) conformation "forbidden" or filtered. T0287 79 :I 1owlA 268 :S T0287 81 :VDKFKKV 1owlA 270 :SDEARNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25749 # 1z3xA.79.107 read from T0287.t06.many.frag # found chain 1z3xA in template set T0287 79 :IGVDKFKKV 1z3xA 105 :LVAEKFEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25750 # 1tqgA.79.54 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 79 :IGVDKFKKV 1tqgA 54 :MGFSSMAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25751 # 1xm9A.79.430 read from T0287.t06.many.frag # found chain 1xm9A in template set T0287 79 :IGVDKFKKV 1xm9A 674 :SASPKAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25752 # 1c1kA.79.126 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 79 :IGVDKFKKV 1c1kA 127 :VEVSAFKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25753 # 1usgA.79.293 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 79 :IGVDKFKKV 1usgA 294 :TGSDEPLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25754 # 1rwhA.79.27 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 79 :IGVDKFKKV 1rwhA 28 :AGDPDFAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25755 # 2anuA.79.76 read from T0287.t06.many.frag # found chain 2anuA in template set T0287 79 :IGVDKFKKV 2anuA 65 :ITEDKFQDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25756 # 2c5uA.79.332 read from T0287.t06.many.frag # found chain 2c5uA in template set T0287 79 :IGVDKFKKV 2c5uA 332 :AGMDHLFGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25757 # 1psrA.79.48 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 79 :IGVDKFKKV 1psrA 49 :KGTNYLADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25758 # 1bc5A.80.46 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 80 :GVDKFKKVY 1bc5A 62 :GLDDFGRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25759 # 1k8kG.80.86 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 80 :GVDKFKKVY 1k8kG 87 :KANDIEKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25760 # 1sedA.80.65 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 80 :GVDKFKKVY 1sedA 64 :GFVTFDKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25761 # 1ib2A.80.154 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 80 :GVDKFKKVY 1ib2A 982 :QPQSLQFII Number of specific fragments extracted= 1 number of extra gaps= 0 total=25762 # 1wteA.80.47 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FKKVY 1wteA 52 :FDELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25764 # 1h6gA.80.157 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 80 :GVDKFKKVY 1h6gA 534 :DVDGLDRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25765 # 1hw1A.80.203 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 80 :GVDKFKKVY 1hw1A 204 :AHDQVYETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25766 # 1uvjA.80.181 read from T0287.t06.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 80 :GV 1uvjA 182 :LQ T0287 83 :KFKKVY 1uvjA 185 :KFDDAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25768 # 2f6kA.80.132 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 80 :GVDKFKKVY 2f6kA 133 :GSPVLERVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25769 # 1ezwA.80.278 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. T0287 80 :G 1ezwA 279 :G T0287 82 :DKFKKVY 1ezwA 281 :GDFGTAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25771 # 1rwhA.80.28 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 80 :GVDKFKKVY 1rwhA 29 :GDPDFAKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25772 # 2aeuA.80.254 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 80 :GVDKFKKVY 2aeuA 255 :NLERIRKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25773 # 1zhxA.80.331 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 80 :GVDKFKKVY 1zhxA 328 :DFNLIAKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25774 # 1z3xA.80.108 read from T0287.t06.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 80 :GV 1z3xA 106 :VA T0287 83 :KFKKVY 1z3xA 109 :KFEAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25776 # 2anuA.80.77 read from T0287.t06.many.frag # found chain 2anuA in template set T0287 80 :GVDKFKKVY 2anuA 66 :TEDKFQDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25777 # 1owlA.80.268 read from T0287.t06.many.frag # found chain 1owlA in training set Warning: unaligning (T0287)G80 (1owlA)R269 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1owlA 270 :SDEARNSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25778 # 1u00A.80.188 read from T0287.t06.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)G80 (1u00A)D577 because D (zeta) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1u00A 578 :VDAIEQAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25779 # 2fbqA.80.123 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 80 :GVDKFKKVY 2fbqA 122 :SQGHLRKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25780 # 1sqsA.80.219 read from T0287.t06.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1sqsA 220 :EAN T0287 84 :FKKVY 1sqsA 224 :LEEWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25782 # 1kr7A.80.94 read from T0287.t06.many.frag # found chain 1kr7A in training set T0287 80 :GVDKFKKVY 1kr7A 94 :GAPDLGHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25783 # 1iuqA.80.51 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 80 :GVDKFKKVY 1iuqA 53 :GNPKADEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25784 # 1e9rA.80.164 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 80 :GVDKFKKVY 1e9rA 235 :GTPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25785 # 1jy1A.80.186 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 80 :GVDKFKKVY 1jy1A 331 :NAPSLKEWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25786 # 1usgA.80.294 read from T0287.t06.many.frag # found chain 1usgA in training set Warning: unaligning (T0287)K83 (1usgA)E298 because P (beta_P) conformation "forbidden" or filtered. T0287 80 :GVD 1usgA 295 :GSD T0287 84 :FKKVY 1usgA 299 :PLALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25788 # 1iirA.80.177 read from T0287.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)D82 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. T0287 80 :GV 1iirA 178 :GL T0287 83 :KFKKVY 1iirA 181 :PVEDIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25790 # 1j79A.80.145 read from T0287.t06.many.frag # found chain 1j79A in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1j79A)I147 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1j79A)I147 T0287 82 :DKFKKVY 1j79A 148 :DIFDREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25791 # 1rcwA.80.192 read from T0287.t06.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)G80 (1rcwA)L193 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1rcwA 194 :KDDADKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25792 # 2cc3A.80.25 read from T0287.t06.many.frag # found chain 2cc3A in template set T0287 80 :GVDKFKKVY 2cc3A 113 :DADTAQYAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25793 # 2bz1A.80.96 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 80 :GVDKFKKVY 2bz1A 97 :GLLNKIRAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25794 # 1gvdA.80.21 read from T0287.t06.many.frag # found chain 1gvdA in training set T0287 80 :GVDKFKKVY 1gvdA 111 :GPKRWSVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25795 # 1k8kG.81.87 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 81 :VDKFKKVYR 1k8kG 88 :ANDIEKAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25796 # 1bc5A.81.47 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 81 :VDKFKKVYR 1bc5A 63 :LDDFGRYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25797 # 1h6gA.81.158 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 81 :VDKFKKVYR 1h6gA 535 :VDGLDRTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25798 # 1sedA.81.66 read from T0287.t06.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDK 1sedA 65 :FVT T0287 85 :KKVYR 1sedA 69 :DKLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25800 # 1hw1A.81.204 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 81 :VDKFKKVYR 1hw1A 205 :HDQVYETVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25801 # 2f6kA.81.133 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 81 :VDKFKKVYR 2f6kA 134 :SPVLERVYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25802 # 1ib2A.81.155 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 81 :VDKFKKVYR 1ib2A 983 :PQSLQFIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25803 # 2aeuA.81.255 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 81 :VDKFKKVYR 2aeuA 256 :LERIRKAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25804 # 1uvjA.81.182 read from T0287.t06.many.frag # found chain 1uvjA in template set T0287 81 :VDKFKKVYR 1uvjA 183 :QGKFDDAYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25805 # 1rwhA.81.29 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 81 :VDKFKKVYR 1rwhA 30 :DPDFAKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25806 # 1wteA.81.48 read from T0287.t06.many.frag # found chain 1wteA in template set T0287 81 :VDKFKKVYR 1wteA 49 :LNDFDELVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25807 # 1pb7A.81.187 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 81 :VDKFKKVYR 1pb7A 188 :QVELSTMYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25808 # 1ezwA.81.279 read from T0287.t06.many.frag # found chain 1ezwA in training set T0287 81 :VDKFKKVYR 1ezwA 280 :KGDFGTAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25809 # 1z3xA.81.109 read from T0287.t06.many.frag # found chain 1z3xA in template set T0287 81 :VDKFKKVYR 1z3xA 107 :AEKFEAADR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25810 # 1zhxA.81.332 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 81 :VDKFKKVYR 1zhxA 329 :FNLIAKTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25811 # 1u00A.81.189 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 81 :VDKFKKVYR 1u00A 578 :VDAIEQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25812 # 2anuA.81.78 read from T0287.t06.many.frag # found chain 2anuA in template set T0287 81 :VDKFKKVYR 2anuA 67 :EDKFQDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25813 # 2fbqA.81.124 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 81 :VDKFKKVYR 2fbqA 123 :QGHLRKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25814 # 1lugA.81.151 read from T0287.t06.many.frag # found chain 1lugA in training set T0287 81 :VDKFKKVYR 1lugA 153 :KPGLQKVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25815 # 1owlA.81.269 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 81 :VDKFKKVYR 1owlA 270 :SDEARNSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25816 # 1m2oA.81.541 read from T0287.t06.many.frag # found chain 1m2oA in template set Warning: unaligning (T0287)K83 (1m2oA)D544 because E (beta_S) conformation "forbidden" or filtered. T0287 81 :VD 1m2oA 542 :TD T0287 84 :FKKVYR 1m2oA 545 :GADVIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25818 # 1e9rA.81.165 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 81 :VDKFKKVYR 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25819 # 2b6cA.81.121 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 82 :DKFKKVYR 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25820 # 1aa7A.81.105 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 81 :VDKFKKVYR 1aa7A 106 :EITFHGAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25821 # 1jy1A.81.187 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 81 :VDKFKKVYR 1jy1A 332 :APSLKEWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25822 # 2bz1A.81.97 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 81 :VDKFKKVYR 2bz1A 98 :LLNKIRAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25823 # 1yw3A.81.115 read from T0287.t06.many.frag # found chain 1yw3A in template set T0287 81 :VDKFKKVYR 1yw3A 116 :AENFQPWSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25824 # 2ae5B.81.320 read from T0287.t06.many.frag # found chain 2ae5B in template set T0287 81 :VDKFKKVYR 2ae5B 321 :DPEVQAAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25825 # 1iirA.81.178 read from T0287.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)D82 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K85 (1iirA)E183 because G (3-10) conformation "forbidden" or filtered. T0287 81 :V 1iirA 179 :L T0287 83 :KF 1iirA 181 :PV T0287 86 :KVYR 1iirA 184 :DIFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=25828 # 2cc3A.81.26 read from T0287.t06.many.frag # found chain 2cc3A in template set T0287 81 :VDKFKKVYR 2cc3A 114 :ADTAQYAYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25829 # 1k8kG.82.88 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 82 :DKFKKVYRL 1k8kG 89 :NDIEKAVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25830 # 1h6gA.82.159 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 82 :DKFKKVYRL 1h6gA 536 :DGLDRTAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25831 # 1hw1A.82.205 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 82 :DKFKKVYRL 1hw1A 206 :DQVYETVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25832 # 1sedA.82.67 read from T0287.t06.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 82 :DK 1sedA 66 :VT T0287 85 :KKVYRL 1sedA 69 :DKLLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25834 # 2f6kA.82.134 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 82 :DKFKKVYRL 2f6kA 135 :PVLERVYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25835 # 1ib2A.82.156 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 82 :DKFKKVYRL 1ib2A 984 :QSLQFIIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25836 # 1m2oA.82.542 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 82 :DKFKKVYRL 1m2oA 543 :DDGADVIRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25837 # 1pb7A.82.188 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 82 :DKFKKVYRL 1pb7A 189 :VELSTMYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25838 # 1bc5A.82.48 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 82 :DKFKKVYRL 1bc5A 64 :DDFGRYLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25839 # 1rwhA.82.30 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 82 :DKFKKVYRL 1rwhA 31 :PDFAKAITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25840 # 2aeuA.82.256 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 82 :DKFKKVYRL 2aeuA 257 :ERIRKAFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=25841 # 1ezwA.82.280 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1ezwA 282 :DFGTAIGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25842 # 1uvjA.82.183 read from T0287.t06.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1uvjA 185 :KFDDAYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25843 # 1zhxA.82.333 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 82 :DKFKKVYRL 1zhxA 330 :NLIAKTKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25844 # 1z3xA.82.110 read from T0287.t06.many.frag # found chain 1z3xA in template set T0287 82 :DKFKKVYRL 1z3xA 108 :EKFEAADRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25845 # 1e9rA.82.166 read from T0287.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)K83 (1e9rA)S238 because E (beta_S) conformation "forbidden" or filtered. T0287 82 :D 1e9rA 237 :P T0287 84 :FKKVYRL 1e9rA 239 :MRELFHW Number of specific fragments extracted= 2 number of extra gaps= 1 total=25847 # 2b6cA.82.122 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 82 :DKFKKVYRL 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25848 # 1u00A.82.190 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 82 :DKFKKVYRL 1u00A 579 :DAIEQAIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25849 # 1lugA.82.152 read from T0287.t06.many.frag # found chain 1lugA in training set T0287 82 :DKFKKVYRL 1lugA 154 :PGLQKVVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25850 # 2bz1A.82.98 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 82 :DKFKKVYRL 2bz1A 99 :LNKIRAYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25851 # 1sz9A.82.87 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 82 :DKFKKVYRL 1sz9A 88 :NLYKRTYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25852 # 1aa7A.82.106 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 82 :DKFKKVYRL 1aa7A 107 :ITFHGAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25853 # 1wteA.82.49 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 82 :D 1wteA 50 :N T0287 84 :FKKVYRL 1wteA 52 :FDELVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25855 # 1owlA.82.270 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 82 :DKFKKVYRL 1owlA 271 :DEARNSIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25856 # 2ae5B.82.321 read from T0287.t06.many.frag # found chain 2ae5B in template set T0287 82 :DKFKKVYRL 2ae5B 322 :PEVQAAARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25857 # 1vykA.82.127 read from T0287.t06.many.frag # found chain 1vykA in template set T0287 82 :DKFKKVYRL 1vykA 128 :TEAEKYYGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25858 # 1j93A.82.167 read from T0287.t06.many.frag # found chain 1j93A in template set T0287 82 :DKFKKVYRL 1j93A 167 :KNFTKIKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25859 # 1xkpA.82.118 read from T0287.t06.many.frag # found chain 1xkpA in training set Warning: unaligning (T0287)F84 (1xkpA)L152 because G (3-10) conformation "forbidden" or filtered. T0287 82 :DK 1xkpA 150 :PE T0287 85 :KKVYRL 1xkpA 153 :AHLSHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25861 # 1qs1A.82.304 read from T0287.t06.many.frag # found chain 1qs1A in training set T0287 82 :DKFKKVYRL 1qs1A 305 :QDYKEINNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25862 # 1ae9A.82.6 read from T0287.t06.many.frag # found chain 1ae9A in template set T0287 82 :DKFKKVYRL 1ae9A 183 :DEYLKIYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25863 # 1k8kG.83.89 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 83 :KFKKVYRLL 1k8kG 90 :DIEKAVQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25864 # 1hw1A.83.206 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 83 :KFKKVYRLL 1hw1A 207 :QVYETVRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25865 # 1m2oA.83.543 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 83 :KFKKVYRLL 1m2oA 544 :DGADVIRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25866 # 1h6gA.83.160 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 83 :KFKKVYRLL 1h6gA 537 :GLDRTAGAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25867 # 2f6kA.83.135 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 83 :KFKKVYRLL 2f6kA 136 :VLERVYQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25868 # 1sedA.83.68 read from T0287.t06.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 83 :K 1sedA 67 :T T0287 85 :KKVYRLL 1sedA 69 :DKLLALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25870 # 1pb7A.83.189 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 83 :KFKKVYRLL 1pb7A 190 :ELSTMYRHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25871 # 1sz9A.83.88 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 83 :KFKKVYRLL 1sz9A 89 :LYKRTYLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25872 # 1rwhA.83.31 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 83 :KFKKVYRLL 1rwhA 32 :DFAKAITAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25873 # 1ib2A.83.157 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 83 :KFKKVYRLL 1ib2A 985 :SLQFIIDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25874 # 1bc5A.83.49 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 83 :KFKKVYRLL 1bc5A 65 :DFGRYLSML Number of specific fragments extracted= 1 number of extra gaps= 0 total=25875 # 2aeuA.83.257 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 83 :KFKKVYRLL 2aeuA 258 :RIRKAFERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25876 # 1e9rA.83.167 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 83 :KFKKVYRLL 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25877 # 1u00A.83.191 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 83 :KFKKVYRLL 1u00A 580 :AIEQAIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25878 # 1zhxA.83.334 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 83 :KFKKVYRLL 1zhxA 331 :LIAKTKTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25879 # 1vykA.83.128 read from T0287.t06.many.frag # found chain 1vykA in template set T0287 83 :KFKKVYRLL 1vykA 129 :EAEKYYGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25880 # 1owlA.83.271 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 83 :KFKKVYRLL 1owlA 272 :EARNSIRVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25881 # 1z3xA.83.111 read from T0287.t06.many.frag # found chain 1z3xA in template set T0287 83 :KFKKVYRLL 1z3xA 109 :KFEAADRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25882 # 1uvjA.83.184 read from T0287.t06.many.frag # found chain 1uvjA in template set T0287 83 :KFKKVYRLL 1uvjA 185 :KFDDAYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25883 # 2bz1A.83.99 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 83 :KFKKVYRLL 2bz1A 100 :NKIRAYALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25884 # 2b6cA.83.123 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 83 :KFKKVYRLL 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25885 # 2audA.83.70 read from T0287.t06.many.frag # found chain 2audA in template set Warning: unaligning (T0287)K83 (2audA)G72 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 2audA 73 :HEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25886 # 1k55A.83.98 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 83 :KFKKVYRLL 1k55A 119 :VFQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25887 # 1ae9A.83.7 read from T0287.t06.many.frag # found chain 1ae9A in template set T0287 83 :KFKKVYRLL 1ae9A 184 :EYLKIYQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25888 # 1ezwA.83.281 read from T0287.t06.many.frag # found chain 1ezwA in training set T0287 83 :KFKKVYRLL 1ezwA 282 :DFGTAIGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25889 # 1zj8A.83.152 read from T0287.t06.many.frag # found chain 1zj8A in template set T0287 83 :KFKKVYRLL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25890 # 1aa7A.83.107 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 83 :KFKKVYRLL 1aa7A 108 :TFHGAKEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25891 # 2fbqA.83.126 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 83 :KFKKVYRLL 2fbqA 125 :HLRKYLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25892 # 1zybA.83.135 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 83 :KFKKVYRLL 1zybA 124 :IFRLNYMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25893 # 1j93A.83.168 read from T0287.t06.many.frag # found chain 1j93A in template set T0287 83 :KFKKVYRLL 1j93A 168 :NFTKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25894 # 1m2oA.84.544 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 84 :FKKVYRLLE 1m2oA 545 :GADVIRWLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25895 # 1k8kG.84.90 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 84 :FKKVYRLLE 1k8kG 91 :IEKAVQSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25896 # 1hw1A.84.207 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 84 :FKKVYRLLE 1hw1A 208 :VYETVRRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25897 # 1h6gA.84.161 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 84 :FKKVYRLLE 1h6gA 538 :LDRTAGAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25898 # 2f6kA.84.136 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 84 :FKKVYRLLE 2f6kA 137 :LERVYQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25899 # 1pb7A.84.190 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 84 :FKKVYRLLE 1pb7A 191 :LSTMYRHME Number of specific fragments extracted= 1 number of extra gaps= 0 total=25900 # 1sz9A.84.89 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 84 :FKKVYRLLE 1sz9A 90 :YKRTYLLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25901 # 2audA.84.71 read from T0287.t06.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 2audA 73 :HEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25902 # 1rwhA.84.32 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 84 :FKKVYRLLE 1rwhA 33 :FAKAITALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25903 # 1sedA.84.69 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 84 :FKKVYRLLE 1sedA 68 :FDKLLALFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25904 # 1e9rA.84.168 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 84 :FKKVYRLLE 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25905 # 1ib2A.84.158 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 84 :FKKVYRLLE 1ib2A 986 :LQFIIDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25906 # 1k55A.84.99 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 84 :FKKVYRLLE 1k55A 120 :FQQIAREVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25907 # 1qmgA.84.297 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 84 :FKKVYRLLE 1qmgA 369 :MLALYNSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25908 # 1u00A.84.192 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 84 :FKKVYRLLE 1u00A 581 :IEQAIKNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25909 # 1bc5A.84.50 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 84 :FKKVYRLLE 1bc5A 66 :FGRYLSMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25910 # 2bz1A.84.100 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 84 :FKKVYRLLE 2bz1A 101 :KIRAYALQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25911 # 1ezwA.84.282 read from T0287.t06.many.frag # found chain 1ezwA in training set T0287 84 :FKKVYRLLE 1ezwA 283 :FGTAIGLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25912 # 1bf5A.84.49 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 84 :FKKVYRLLE 1bf5A 199 :LKKMYLMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25913 # 1zhxA.84.335 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 84 :FKKVYRLLE 1zhxA 332 :IAKTKTELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25914 # 1zj8A.84.153 read from T0287.t06.many.frag # found chain 1zj8A in template set T0287 84 :FKKVYRLLE 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25915 # 2fkcA.84.145 read from T0287.t06.many.frag # found chain 2fkcA in template set T0287 84 :FKKVYRLLE 2fkcA 146 :QNIVLNWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25916 # 1owlA.84.272 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 84 :FKKVYRLLE 1owlA 273 :ARNSIRVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25917 # 2aeuA.84.258 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 84 :FKKVYRLLE 2aeuA 259 :IRKAFERAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25918 # 1j93A.84.169 read from T0287.t06.many.frag # found chain 1j93A in template set T0287 84 :FKKVYRLLE 1j93A 169 :FTKIKRLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25919 # 1jx4A.84.209 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1jx4A 210 :FDKLKGMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25920 # 1aa7A.84.108 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 84 :FKKVYRLLE 1aa7A 109 :FHGAKEISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25921 # 1vykA.84.129 read from T0287.t06.many.frag # found chain 1vykA in template set T0287 84 :FKKVYRLLE 1vykA 130 :AEKYYGQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25922 # 1ae9A.84.8 read from T0287.t06.many.frag # found chain 1ae9A in template set T0287 84 :FKKVYRLLE 1ae9A 185 :YLKIYQAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25923 # 2b6cA.84.124 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 84 :FKKVYRLLE 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25924 # 1m2oA.85.545 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 85 :KKVYRLLES 1m2oA 546 :ADVIRWLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25925 # 1hw1A.85.208 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 85 :KKVYRLLES 1hw1A 209 :YETVRRYGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25926 # 1h6gA.85.162 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 85 :KKVYRLLES 1h6gA 539 :DRTAGAIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25927 # 1k8kG.85.91 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 85 :KKVYRLLES 1k8kG 92 :EKAVQSLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25928 # 1sz9A.85.90 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 85 :KKVYRLLES 1sz9A 91 :KRTYLLVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25929 # 2audA.85.72 read from T0287.t06.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 2audA 74 :EARYKLF T0287 93 :S 2audA 82 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=25931 # 1pb7A.85.191 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 85 :KKVYRLLES 1pb7A 192 :STMYRHMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25932 # 2f6kA.85.137 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 85 :KKVYRLLES 2f6kA 138 :ERVYQELDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25933 # 1bf5A.85.50 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 85 :KKVYRLLES 1bf5A 200 :KKMYLMLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25934 # 1qmgA.85.298 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 85 :KKVYRLLES 1qmgA 370 :LALYNSLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25935 # 1e9rA.85.169 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 85 :KKVYRLLES 1e9rA 240 :RELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25936 # 1jx4A.85.210 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 85 :KKVYRLLES 1jx4A 211 :DKLKGMIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25937 # 1rwhA.85.33 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 85 :KKVYRLLES 1rwhA 34 :AKAITALNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25938 # 2fkcA.85.146 read from T0287.t06.many.frag # found chain 2fkcA in template set T0287 85 :KKVYRLLES 2fkcA 147 :NIVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25939 # 2bz1A.85.101 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 85 :KKVYRLLES 2bz1A 102 :IRAYALQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25940 # 1zhxA.85.336 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 85 :KKVYRLLES 1zhxA 333 :AKTKTELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25941 # 2ccyA.85.82 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 85 :KKVYR 2ccyA 83 :LEGWK T0287 92 :ES 2ccyA 90 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25943 # 1vraB.85.64 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 85 :KKVYRLLES 1vraB 261 :ANFYKALQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25944 # 1zybA.85.137 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 85 :KKVYRLLES 1zybA 126 :RLNYMNIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25945 # 1zj8A.85.154 read from T0287.t06.many.frag # found chain 1zj8A in template set T0287 85 :KKVYRLLES 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25946 # 1k55A.85.100 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 85 :KKVYRLLES 1k55A 121 :QQIAREVGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25947 # 1usyA.85.147 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 85 :KKVYRLLES 1usyA 148 :EKVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25948 # 1owlA.85.273 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 85 :KKVYRLLES 1owlA 274 :RNSIRVWQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25949 # 1w2xA.85.693 read from T0287.t06.many.frag # found chain 1w2xA in template set T0287 85 :KKVYRLLES 1w2xA 2169 :RQVATWIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25950 # 2erbA.85.73 read from T0287.t06.many.frag # found chain 2erbA in template set T0287 85 :KKVYRLLES 2erbA 74 :EKLHDSLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25951 # 1jt6A.85.112 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 85 :KKVYRLLES 1jt6A 113 :NEKMNKLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25952 # 1j93A.85.170 read from T0287.t06.many.frag # found chain 1j93A in template set T0287 85 :KKVYRLLES 1j93A 170 :TKIKRLAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25953 # 2b6cA.85.125 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 85 :KKVYRLLES 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25954 # 1x6iA.85.43 read from T0287.t06.many.frag # found chain 1x6iA in training set Warning: unaligning (T0287)S93 (1x6iA)C49 because P (beta_P) conformation "forbidden" or filtered. T0287 85 :KKVYRLLE 1x6iA 41 :RIFIRLLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=25955 # 1aa7A.85.109 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 85 :KKVYRLLES 1aa7A 110 :HGAKEISLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25956 # 1m2oA.86.546 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 86 :KVYRLLESE 1m2oA 547 :DVIRWLDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25957 # 1hw1A.86.209 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 86 :KVYRLLESE 1hw1A 210 :ETVRRYGHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25958 # 1h6gA.86.163 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 86 :KVYRLLESE 1h6gA 540 :RTAGAIRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25959 # 1k8kG.86.92 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 86 :KVYRLLESE 1k8kG 93 :KAVQSLDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25960 # 1jx4A.86.211 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1jx4A 212 :KLKGMI T0287 93 :SE 1jx4A 219 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25962 # 1qmgA.86.299 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 86 :KVYRLLESE 1qmgA 371 :ALYNSLSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25963 # 2fkcA.86.147 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 T0287 86 :KVYRLLES 2fkcA 148 :IVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25964 # 1sz9A.86.91 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 86 :KVYRLLESE 1sz9A 92 :RTYLLVDNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25965 # 1bf5A.86.51 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 86 :KVYRLLESE 1bf5A 201 :KMYLMLDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25966 # 1e9rA.86.170 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 86 :KVYRLLESE 1e9rA 241 :ELFHWTTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25967 # 1rwhA.86.34 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 86 :KVYRLLESE 1rwhA 35 :KAITALNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25968 # 1pb7A.86.192 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 86 :KVYRLLESE 1pb7A 193 :TMYRHMEKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25969 # 2audA.86.73 read from T0287.t06.many.frag # found chain 2audA in template set T0287 86 :KVYRLLESE 2audA 75 :ARYKLFNSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25970 # 1vls.86.101 read from T0287.t06.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1vls 136 :ELIQFLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=25971 # 2ccyA.86.83 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 86 :KVYR 2ccyA 84 :EGWK T0287 92 :ESE 2ccyA 90 :ATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25973 # 1w96A.86.529 read from T0287.t06.many.frag # found chain 1w96A in training set T0287 86 :KVYRLLESE 1w96A 542 :YLIKLLETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25974 # 1k55A.86.101 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 86 :KVYRLLESE 1k55A 122 :QIAREVGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25975 # 1w2xA.86.694 read from T0287.t06.many.frag # found chain 1w2xA in template set T0287 86 :KVYRLLESE 1w2xA 2170 :QVATWIEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25976 # 2erbA.86.74 read from T0287.t06.many.frag # found chain 2erbA in template set T0287 86 :KVYRLLESE 2erbA 75 :KLHDSLPSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25977 # 2f6kA.86.138 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 86 :KVYRLLESE 2f6kA 139 :RVYQELDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25978 # 1zj8A.86.155 read from T0287.t06.many.frag # found chain 1zj8A in template set T0287 86 :KVYRLLESE 1zj8A 145 :EIWRRLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25979 # 1z72A.86.85 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 86 :KVYRLLESE 1z72A 83 :KQLGFLEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25980 # 1jt6A.86.113 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 86 :KVYRLLESE 1jt6A 114 :EKMNKLENK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25981 # 1vraB.86.65 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 86 :KVYRLLESE 1vraB 262 :NFYKALQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25982 # 1zybA.86.138 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 86 :KVYRLLESE 1zybA 127 :LNYMNIVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25983 # 1k5nA.86.154 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 86 :KVYRLLESE 1k5nA 155 :QLRAYLEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25984 # 1sauA.86.88 read from T0287.t06.many.frag # found chain 1sauA in training set T0287 86 :KVYRLLESE 1sauA 89 :YIYKLFPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25985 # 1zhxA.86.337 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 86 :KVYRLLESE 1zhxA 334 :KTKTELEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=25986 # 1usyA.86.148 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1usyA 149 :KVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=25987 # 1ib2A.86.160 read from T0287.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)E92 (1ib2A)K994 because P (beta_P) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1ib2A 988 :FIIDAF T0287 93 :SE 1ib2A 995 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25989 # 1m2oA.87.547 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 87 :VYRLLESET 1m2oA 548 :VIRWLDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25990 # 1hw1A.87.210 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 87 :VYRLLESET 1hw1A 211 :TVRRYGHES Number of specific fragments extracted= 1 number of extra gaps= 0 total=25991 # 1jx4A.87.212 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 87 :VYRLLESET 1jx4A 213 :LKGMIGEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25992 # 2fkcA.87.148 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 87 :VYRLLES 2fkcA 149 :VLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25993 # 1vls.87.102 read from T0287.t06.many.frag # found chain 1vls in template set Warning: unaligning (T0287)S93 (1vls)N143 because G (3-10) conformation "forbidden" or filtered. T0287 87 :VYRLLE 1vls 137 :LIQFLD T0287 94 :ET 1vls 144 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25995 # 1sz9A.87.92 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 87 :VYRLLESET 1sz9A 93 :TYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25996 # 1qmgA.87.300 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 87 :VYRLLESET 1qmgA 372 :LYNSLSEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25997 # 1h6gA.87.164 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 87 :VYRLLESET 1h6gA 541 :TAGAIRGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25998 # 1bf5A.87.52 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 87 :VYRLLESET 1bf5A 202 :MYLMLDNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25999 # 1e9rA.87.171 read from T0287.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1e9rA 242 :LFHWTTI T0287 95 :T 1e9rA 250 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=26001 # 1k5nA.87.155 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 87 :VYRLLESET 1k5nA 156 :LRAYLEGEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26002 # 1z72A.87.86 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 87 :VYRLLESET 1z72A 84 :QLGFLEADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26003 # 1k8kG.87.93 read from T0287.t06.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)E92 (1k8kG)D99 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLL 1k8kG 94 :AVQSL T0287 93 :SET 1k8kG 100 :KNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26005 # 1w96A.87.530 read from T0287.t06.many.frag # found chain 1w96A in training set T0287 87 :VYRLLESET 1w96A 543 :LIKLLETED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26006 # 1dk8A.87.82 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 87 :VYRLLESET 1dk8A 193 :VSRQTKPAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26007 # 1rwhA.87.35 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 87 :VYRLLESET 1rwhA 36 :AITALNNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26008 # 2ccyA.87.84 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 87 :VYR 2ccyA 85 :GWK T0287 92 :ESET 2ccyA 90 :ATES Number of specific fragments extracted= 2 number of extra gaps= 1 total=26010 # 1usyA.87.149 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)S93 (1usyA)T156 because G (3-10) conformation "forbidden" or filtered. T0287 87 :VYRLLE 1usyA 150 :VLNLID T0287 94 :ET 1usyA 157 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26012 # 2audA.87.74 read from T0287.t06.many.frag # found chain 2audA in template set T0287 87 :VYRLLESET 2audA 76 :RYKLFNSPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26013 # 1jt6A.87.114 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 87 :VYRLLESET 1jt6A 115 :KMNKLENKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26014 # 1wwjA.87.64 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 87 :VYRLLESET 1wwjA 65 :LAKILPPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26015 # 1k55A.87.102 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 87 :VYRLLESET 1k55A 123 :IAREVGEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26016 # 1x6iA.87.45 read from T0287.t06.many.frag # found chain 1x6iA in training set T0287 87 :VYRLLESET 1x6iA 43 :FIRLLECDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26017 # 1w2xA.87.695 read from T0287.t06.many.frag # found chain 1w2xA in template set T0287 87 :VYRLLESET 1w2xA 2171 :VATWIEENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26018 # 2erbA.87.75 read from T0287.t06.many.frag # found chain 2erbA in template set T0287 87 :VYRLLESET 2erbA 76 :LHDSLPSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26019 # 1q92A.87.48 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E92 (1q92A)R85 because E (beta_S) conformation "forbidden" or filtered. T0287 87 :VY 1q92A 80 :QY T0287 91 :L 1q92A 84 :L T0287 93 :SET 1q92A 86 :PGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26022 # 1zybA.87.139 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 87 :VYRLLESET 1zybA 128 :NYMNIVSNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26023 # 1vraB.87.66 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 87 :VYRLLESET 1vraB 263 :FYKALQLAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26024 # 1o82A.87.30 read from T0287.t06.many.frag # found chain 1o82A in training set T0287 87 :VYRLLESET 1o82A 31 :ILTAVGSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26025 # 1v9mA.87.71 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRL 1v9mA 72 :LPRL T0287 94 :ET 1v9mA 79 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26027 # 1hw1A.88.211 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 88 :YRLLESETM 1hw1A 212 :VRRYGHESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26028 # 1m2oA.88.548 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 88 :YRLLESETM 1m2oA 549 :IRWLDRTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26029 # 1jx4A.88.213 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1jx4A 214 :KGMI T0287 93 :SETM 1jx4A 219 :EAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26031 # 2fkcA.88.149 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 88 :YRLLES 2fkcA 150 :LNWLEK T0287 96 :M 2fkcA 158 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26033 # 1k5nA.88.156 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 88 :YRLLESETM 1k5nA 157 :RAYLEGECV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26034 # 1h6gA.88.165 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 88 :YRLLESETM 1h6gA 542 :AGAIRGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26035 # 1vls.88.103 read from T0287.t06.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 88 :YRLLES 1vls 138 :IQFLDN T0287 95 :TM 1vls 145 :NM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26037 # 1wwjA.88.65 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 88 :YRLLESETM 1wwjA 66 :AKILPPPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26038 # 1bf5A.88.53 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 88 :YRLLESETM 1bf5A 203 :YLMLDNKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26039 # 1sz9A.88.93 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 88 :YRLLESETM 1sz9A 94 :YLLVDNTTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26040 # 1qmgA.88.301 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 88 :YRLLESETM 1qmgA 373 :YNSLSEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26041 # 1dk8A.88.83 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 88 :YRLLESETM 1dk8A 194 :SRQTKPATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26042 # 1z72A.88.87 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 88 :YRLLESETM 1z72A 85 :LGFLEADED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26043 # 2ccyA.88.85 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 88 :YR 2ccyA 86 :WK T0287 92 :ESETM 2ccyA 90 :ATEST Number of specific fragments extracted= 2 number of extra gaps= 1 total=26045 # 1usyA.88.150 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 88 :YRLLES 1usyA 151 :LNLIDT T0287 95 :TM 1usyA 158 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26047 # 1e9rA.88.172 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 88 :YRLLESETM 1e9rA 243 :FHWTTIATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26048 # 1rwhA.88.36 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 88 :YRLLESETM 1rwhA 37 :ITALNNKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26049 # 1jt6A.88.115 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 88 :YRLLESETM 1jt6A 116 :MNKLENKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26050 # 1zybA.88.140 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 88 :YRLLESETM 1zybA 129 :YMNIVSNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26051 # 1w96A.88.531 read from T0287.t06.many.frag # found chain 1w96A in training set T0287 88 :YRLLESETM 1w96A 544 :IKLLETEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26052 # 1v9mA.88.72 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRL 1v9mA 73 :PRL T0287 92 :E 1v9mA 77 :T T0287 94 :ETM 1v9mA 79 :EAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=26055 # 1q92A.88.49 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E92 (1q92A)R85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 88 :Y 1q92A 81 :Y T0287 91 :L 1q92A 84 :L T0287 93 :S 1q92A 86 :P T0287 95 :TM 1q92A 88 :LS Number of specific fragments extracted= 4 number of extra gaps= 3 total=26059 # 1vraB.88.67 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 88 :YRLLESETM 1vraB 264 :YKALQLACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26060 # 1w2xA.88.696 read from T0287.t06.many.frag # found chain 1w2xA in template set T0287 88 :YRLLESETM 1w2xA 2172 :ATWIEENYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26061 # 2erbA.88.76 read from T0287.t06.many.frag # found chain 2erbA in template set T0287 88 :YRLLESETM 2erbA 77 :HDSLPSSMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26062 # 1k8kG.88.94 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 88 :YRLLESETM 1k8kG 95 :VQSLDKNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26063 # 1k55A.88.103 read from T0287.t06.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1k55A 124 :AREV T0287 93 :SETM 1k55A 129 :EVRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26065 # 1m0kA.88.183 read from T0287.t06.many.frag # found chain 1m0kA in training set T0287 88 :YRLLESETM 1m0kA 171 :FKVLRNVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26066 # 1o82A.88.31 read from T0287.t06.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1o82A 32 :LTAV T0287 93 :SETM 1o82A 37 :SGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26068 # 1c9kA.88.107 read from T0287.t06.many.frag # found chain 1c9kA in template set T0287 88 :YRLLESETM 1c9kA 108 :ERAIDDEIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26069 # 1hw1A.89.212 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 89 :RLLESETME 1hw1A 213 :RRYGHESGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26070 # 1m2oA.89.549 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 89 :RLLESETME 1m2oA 550 :RWLDRTLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26071 # 1jx4A.89.214 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 89 :RLLESETME 1jx4A 215 :GMIGEAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26072 # 1k5nA.89.157 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 89 :RLLESETME 1k5nA 158 :AYLEGECVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26073 # 2fkcA.89.150 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 89 :RLLES 2fkcA 151 :NWLEK T0287 96 :ME 2fkcA 158 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26075 # 1wwjA.89.66 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 89 :RLLESETME 1wwjA 67 :KILPPPVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26076 # 1dk8A.89.84 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 89 :RLLESETME 1dk8A 195 :RQTKPATKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26077 # 1sz9A.89.94 read from T0287.t06.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1sz9A 95 :LLV T0287 93 :SETME 1sz9A 99 :NTTRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26079 # 1h6gA.89.166 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 89 :RLLESETME 1h6gA 543 :GAIRGRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26080 # 1qmgA.89.302 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 89 :RLLESETME 1qmgA 374 :NSLSEEGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26081 # 1z72A.89.88 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 89 :RLLESETME 1z72A 86 :GFLEADEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26082 # 2ccyA.89.86 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 89 :R 2ccyA 87 :K T0287 92 :ESETME 2ccyA 90 :ATESTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26084 # 1bf5A.89.54 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 89 :RLLESETME 1bf5A 204 :LMLDNKRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26085 # 1jt6A.89.116 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 89 :RLLESETME 1jt6A 117 :NKLENKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=26086 # 1v9mA.89.73 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 89 :RL 1v9mA 74 :RL T0287 93 :SETME 1v9mA 78 :GEARE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26088 # 1vls.89.104 read from T0287.t06.many.frag # found chain 1vls in template set T0287 89 :RLLESETME 1vls 139 :QFLDNGNMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26089 # 1zybA.89.141 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 89 :RLLESETME 1zybA 130 :MNIVSNRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26090 # 1q92A.89.50 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 91 :LESETME 1q92A 84 :LRPGLSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26091 # 1usyA.89.151 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 89 :RLLES 1usyA 152 :NLIDT T0287 95 :TME 1usyA 158 :NLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26093 # 1e9rA.89.173 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 89 :RLLESETME 1e9rA 244 :HWTTIATFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26094 # 1uruA.89.99 read from T0287.t06.many.frag # found chain 1uruA in template set T0287 89 :RLLESETME 1uruA 100 :GASESLWAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26095 # 1k55A.89.104 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 89 :RLLESETME 1k55A 125 :REVGEVRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26096 # 1vraB.89.68 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 89 :RLLESETME 1vraB 265 :KALQLACED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26097 # 1o82A.89.32 read from T0287.t06.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RLL 1o82A 33 :TAV T0287 93 :SETME 1o82A 37 :SGGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26099 # 1qwnA.89.138 read from T0287.t06.many.frag # found chain 1qwnA in training set Warning: unaligning (T0287)E92 (1qwnA)G142 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1qwnA 139 :HDL T0287 93 :SETME 1qwnA 143 :ENKKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26101 # 1rwhA.89.37 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 89 :RLLESETME 1rwhA 38 :TALNNKAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26102 # 1zs3A.89.148 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 89 :RLLESETME 1zs3A 149 :VELYGYNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26103 # 1k8kG.89.95 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 89 :RLLESETME 1k8kG 96 :QSLDKNGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26104 # 1zhxA.89.340 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 89 :RLLESETME 1zhxA 337 :TELEETQRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26105 # 1qc7A.89.43 read from T0287.t06.many.frag # found chain 1qc7A in template set T0287 89 :RLLESETME 1qc7A 278 :KNMSKRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26106 # 1hw1A.90.213 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 90 :LLESETMEL 1hw1A 214 :RYGHESGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26107 # 1k5nA.90.158 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 90 :LLESETMEL 1k5nA 159 :YLEGECVEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26108 # 1jx4A.90.215 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 90 :LLESETMEL 1jx4A 216 :MIGEAKAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26109 # 1dk8A.90.85 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 90 :LLESETMEL 1dk8A 196 :QTKPATKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26110 # 1wwjA.90.67 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 90 :LLESETMEL 1wwjA 68 :ILPPPVRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26111 # 1m2oA.90.550 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 90 :LLESETMEL 1m2oA 551 :WLDRTLIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26112 # 2fkcA.90.151 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 90 :LLES 2fkcA 152 :WLEK T0287 96 :MEL 2fkcA 158 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26114 # 1sz9A.90.95 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 90 :LLESETMEL 1sz9A 96 :LVDNTTRTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26115 # 1h6gA.90.167 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 90 :LLESETMEL 1h6gA 544 :AIRGRAARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26116 # 2czrA.90.11 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 90 :LLESETMEL 2czrA 4 :ELSPGTKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26117 # 1q92A.90.51 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)S93 (1q92A)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :LE 1q92A 84 :LR T0287 94 :ETMEL 1q92A 87 :GLSEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=26119 # 2ccyA.90.87 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMEL 2ccyA 90 :ATESTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26120 # 1z72A.90.89 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 90 :LLESETMEL 1z72A 87 :FLEADEDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26121 # 1g61A.90.74 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 90 :LLESETMEL 1g61A 2075 :IVEDEELDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26122 # 1bf5A.90.55 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 90 :LLESETMEL 1bf5A 205 :MLDNKRKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26123 # 1qmgA.90.303 read from T0287.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LL 1qmgA 375 :SL T0287 93 :SETMEL 1qmgA 378 :EEGKKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26125 # 1v9mA.90.74 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1v9mA 75 :LV T0287 94 :ETMEL 1v9mA 79 :EAREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26127 # 1zs3A.90.149 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 90 :LLESETMEL 1zs3A 150 :ELYGYNLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26128 # 1jt6A.90.117 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 90 :LLESETMEL 1jt6A 118 :KLENKYIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26129 # 1uruA.90.100 read from T0287.t06.many.frag # found chain 1uruA in template set T0287 90 :LLESETMEL 1uruA 101 :ASESLWADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26130 # 1kaeA.90.78 read from T0287.t06.many.frag # found chain 1kaeA in training set T0287 90 :LLESETMEL 1kaeA 79 :RLSDELKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26131 # 1zybA.90.142 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 90 :LLESETMEL 1zybA 131 :NIVSNRAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26132 # 1e9rA.90.174 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 90 :LLESETMEL 1e9rA 245 :WTTIATFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26133 # 1k8kG.90.96 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 90 :LLESETMEL 1k8kG 97 :SLDKNGVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26134 # 1k55A.90.105 read from T0287.t06.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1k55A 126 :EV T0287 93 :SETMEL 1k55A 129 :EVRMQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26136 # 1lc5A.90.271 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 90 :LLESETMEL 1lc5A 272 :WLREEGARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26137 # 1o82A.90.33 read from T0287.t06.many.frag # found chain 1o82A in training set T0287 90 :LLESETMEL 1o82A 34 :AVGSGGLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26138 # 1zz1A.90.74 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 90 :LLESETMEL 1zz1A 75 :AHSAAHLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26139 # 1q6uA.90.97 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 90 :LLESETMEL 1q6uA 98 :DNEAKGKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26140 # 1fi4A.90.355 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 90 :LLESETMEL 1fi4A 336 :KFTTEQLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26141 # 1hw1A.91.214 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 91 :LESETMELL 1hw1A 215 :YGHESGEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26142 # 1k5nA.91.159 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 91 :LESETMELL 1k5nA 160 :LEGECVEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26143 # 1jx4A.91.216 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 91 :L 1jx4A 217 :I T0287 93 :SETMELL 1jx4A 219 :EAKAKYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26145 # 1dk8A.91.86 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 91 :LESETMELL 1dk8A 197 :TKPATKSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26146 # 1wwjA.91.68 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 91 :LESETMELL 1wwjA 69 :LPPPVRKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=26147 # 1q92A.91.52 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TMELL 1q92A 88 :LSEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26149 # 2czrA.91.12 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 91 :LESETMELL 2czrA 5 :LSPGTKKVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26150 # 2fkcA.91.152 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 91 :LES 2fkcA 153 :LEK T0287 96 :MELL 2fkcA 158 :VLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26152 # 1m2oA.91.551 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 91 :LESETMELL 1m2oA 552 :LDRTLIKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26153 # 1sz9A.91.96 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 91 :LESETMELL 1sz9A 97 :VDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26154 # 1h6gA.91.168 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 91 :LESETMELL 1h6gA 545 :IRGRAARVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26155 # 2ccyA.91.88 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMELL 2ccyA 90 :ATESTKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26156 # 1g61A.91.75 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2076 :VEDEELDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26157 # 1zz1A.91.75 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 91 :LESETMELL 1zz1A 76 :HSAAHLENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26158 # 1z72A.91.90 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 91 :LESETMELL 1z72A 88 :LEADEDGYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26159 # 1fi4A.91.356 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 91 :LESETMELL 1fi4A 337 :FTTEQLEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26160 # 1lc5A.91.272 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 91 :LESETMELL 1lc5A 273 :LREEGARFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26161 # 1oohA.91.78 read from T0287.t06.many.frag # found chain 1oohA in training set T0287 91 :LESETMELL 1oohA 77 :VPPEMMEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26162 # 1zs3A.91.150 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 91 :LESETMELL 1zs3A 151 :LYGYNLQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26163 # 1v9mA.91.75 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 93 :SETMELL 1v9mA 78 :GEAREAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26164 # 1jt6A.91.118 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 91 :LESETMELL 1jt6A 119 :LENKYIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26165 # 1kaeA.91.79 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)E92 (1kaeA)S81 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1kaeA 80 :L T0287 93 :SETMELL 1kaeA 82 :DELKQAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26167 # 1l5aA.91.214 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 91 :LESETMELL 1l5aA 215 :LNSQLNHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26168 # 1qmgA.91.304 read from T0287.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1qmgA 376 :L T0287 93 :SETMELL 1qmgA 378 :EEGKKDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26170 # 1uruA.91.101 read from T0287.t06.many.frag # found chain 1uruA in template set T0287 91 :LESETMELL 1uruA 102 :SESLWADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26171 # 1ekqA.91.145 read from T0287.t06.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELL 1ekqA 148 :GDIIRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26172 # 1fobA.91.109 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 91 :LESETMELL 1fobA 110 :LYNYTLEVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26173 # 1bf5A.91.56 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 91 :LESETMELL 1bf5A 206 :LDNKRKEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26174 # 1g61A.91.166 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2167 :VEDDELEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26175 # 1za0A.91.206 read from T0287.t06.many.frag # found chain 1za0A in template set Warning: unaligning (T0287)L91 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)R208 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)R208 T0287 93 :SETMELL 1za0A 209 :DETIAAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26176 # 1hw1A.92.215 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 92 :ESETMELLH 1hw1A 216 :GHESGEIWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26177 # 1k5nA.92.160 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 92 :ESETMELLH 1k5nA 161 :EGECVEWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26178 # 1jx4A.92.217 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1jx4A 219 :EAKAKYLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26179 # 1q92A.92.53 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 92 :ESETMELLH 1q92A 85 :RPGLSEKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26180 # 1wwjA.92.69 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 92 :ESETMELLH 1wwjA 70 :PPPVRKIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26181 # 1dk8A.92.87 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 92 :ESETMELLH 1dk8A 198 :KPATKSFIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26182 # 2czrA.92.13 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E92 (2czrA)S6 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 2czrA 7 :PGTKKVYT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26183 # 2fkcA.92.153 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 92 :ES 2fkcA 154 :EK T0287 96 :MELLH 2fkcA 158 :VLVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26185 # 1zz1A.92.76 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 92 :ESETMELLH 1zz1A 77 :SAAHLENMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26186 # 1h6gA.92.169 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 92 :ESETMELLH 1h6gA 546 :RGRAARVIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26187 # 1m2oA.92.552 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 92 :ESETMELLH 1m2oA 553 :DRTLIKLCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26188 # 2ccyA.92.89 read from T0287.t06.many.frag # found chain 2ccyA in training set T0287 92 :ESETMELLH 2ccyA 90 :ATESTKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26189 # 1fi4A.92.357 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)E92 (1fi4A)T338 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1fi4A 339 :TEQLEAFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26190 # 1g61A.92.76 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 92 :ESETMELLH 1g61A 2077 :EDEELDRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26191 # 1y1pA.92.107 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 92 :ESETMELLH 1y1pA 109 :IGGTLNALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26192 # 1sz9A.92.97 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 92 :ESETMELLH 1sz9A 98 :DNTTRTKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26193 # 1zs3A.92.151 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 92 :ESETMELLH 1zs3A 152 :YGYNLQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26194 # 1lc5A.92.273 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 92 :ESETMELLH 1lc5A 274 :REEGARFYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26195 # 1uhvA.92.31 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 92 :ESETMELLH 1uhvA 32 :QKEYIETLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26196 # 1l5aA.92.215 read from T0287.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)E92 (1l5aA)N216 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1l5aA 217 :SQLNHLLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26197 # 1a4iA.92.77 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 92 :ESETMELLH 1a4iA 78 :ESEVMKYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26198 # 1fobA.92.110 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 92 :ESETMELLH 1fobA 111 :YNYTLEVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26199 # 1e9rA.92.176 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 92 :ESETMELLH 1e9rA 247 :TIATFDDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26200 # 1ekqA.92.146 read from T0287.t06.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELLH 1ekqA 148 :GDIIRLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26201 # 1oohA.92.79 read from T0287.t06.many.frag # found chain 1oohA in training set T0287 92 :ESETMELLH 1oohA 78 :PPEMMEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26202 # 1q6uA.92.99 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 92 :ESETMELLH 1q6uA 100 :EAKGKEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26203 # 3nul.92.41 read from T0287.t06.many.frag # found chain 3nul in training set T0287 92 :ESETMELLH 3nul 43 :KPQEIDGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26204 # 1qtwA.92.44 read from T0287.t06.many.frag # found chain 1qtwA in training set Warning: unaligning (T0287)E92 (1qtwA)T45 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1qtwA 46 :TQTIDEFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26205 # 1jftA.92.27 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 92 :ESETMELLH 1jftA 29 :AEETRNAVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26206 # 1gsoA.92.305 read from T0287.t06.many.frag # found chain 1gsoA in training set T0287 92 :ESETMELLH 1gsoA 304 :KSDLVELCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26207 # 1hw1A.93.216 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 93 :SETMELLHA 1hw1A 217 :HESGEIWHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26208 # 1k5nA.93.161 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 93 :SETMELLHA 1k5nA 162 :GECVEWLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26209 # 1jx4A.93.218 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 93 :SETMELLHA 1jx4A 219 :EAKAKYLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26210 # 1q92A.93.54 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 93 :SETMELLHA 1q92A 86 :PGLSEKAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26211 # 2fkcA.93.154 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 93 :S 2fkcA 155 :K T0287 96 :MELLHA 2fkcA 158 :VLVLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26213 # 2czrA.93.14 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 93 :SETMELLHA 2czrA 7 :PGTKKVYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26214 # 1y1pA.93.108 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 93 :SETMELLHA 1y1pA 110 :GGTLNALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26215 # 1e9rA.93.177 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 93 :SETMELLHA 1e9rA 248 :IATFDDLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26216 # 1fi4A.93.358 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 93 :SETMELLHA 1fi4A 339 :TEQLEAFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26217 # 1zz1A.93.77 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 93 :SETMELLHA 1zz1A 78 :AAHLENMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26218 # 1h6gA.93.170 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 93 :SETMELLHA 1h6gA 547 :GRAARVIHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26219 # 1wwjA.93.70 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 93 :SETMELLHA 1wwjA 71 :PPVRKIIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26220 # 1dk8A.93.88 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 93 :SETMELLHA 1dk8A 199 :PATKSFIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26221 # 2ccyA.93.90 read from T0287.t06.many.frag # found chain 2ccyA in training set T0287 93 :SETMELLHA 2ccyA 91 :TESTKLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26222 # 1lc5A.93.274 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 93 :SETMELLHA 1lc5A 275 :EEGARFYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26223 # 1m2oA.93.553 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 93 :SETMELLHA 1m2oA 554 :RTLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26224 # 1zs3A.93.152 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 93 :SETMELLHA 1zs3A 153 :GYNLQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26225 # 1g61A.93.77 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 93 :SETMELLHA 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26226 # 1uhvA.93.32 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 93 :SETMELLHA 1uhvA 33 :KEYIETLKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26227 # 1g8mA.93.126 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 93 :SETMELLHA 1g8mA 127 :IGGVALLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26228 # 1uq5A.93.204 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 93 :SETMELLHA 1uq5A 209 :NSWGRLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26229 # 1qtwA.93.45 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 93 :SETMELLHA 1qtwA 46 :TQTIDEFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26230 # 1a4iA.93.78 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 93 :SETMELLHA 1a4iA 79 :SEVMKYITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26231 # 1jftA.93.28 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 93 :SETMELLHA 1jftA 30 :EETRNAVWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26232 # 1l5aA.93.216 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 93 :SETMELLHA 1l5aA 217 :SQLNHLLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26233 # 1fobA.93.111 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 93 :SETMELLHA 1fobA 112 :NYTLEVCNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26234 # 1q6uA.93.100 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 93 :SETMELLHA 1q6uA 101 :AKGKEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26235 # 1oohA.93.80 read from T0287.t06.many.frag # found chain 1oohA in training set T0287 93 :SETMELLHA 1oohA 79 :PEMMEMSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26236 # 1wgzA.93.189 read from T0287.t06.many.frag # found chain 1wgzA in template set T0287 93 :SETMELLHA 1wgzA 190 :EGLKGLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26237 # 1lycA.93.95 read from T0287.t06.many.frag # found chain 1lycA in training set T0287 93 :SETMELLHA 1lycA 96 :TDTVEALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26238 # 1hw1A.94.217 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 94 :ETMELLHAI 1hw1A 218 :ESGEIWHRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26239 # 1k5nA.94.162 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 94 :ETMELLHAI 1k5nA 163 :ECVEWLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26240 # 1q92A.94.55 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 94 :ETMELLHAI 1q92A 87 :GLSEKAISI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26241 # 1y1pA.94.109 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 94 :ETMELLHAI 1y1pA 111 :GTLNALRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26242 # 1jx4A.94.219 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 94 :ETMELLHAI 1jx4A 220 :AKAKYLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26243 # 1zz1A.94.78 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 94 :ETMELLHAI 1zz1A 79 :AHLENMKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26244 # 2fkcA.94.155 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 Warning: unaligning (T0287)I102 (2fkcA)I164 because G (3-10) conformation "forbidden" or filtered. T0287 96 :MELLHA 2fkcA 158 :VLVLTD Number of specific fragments extracted= 1 number of extra gaps= 2 total=26245 # 2czrA.94.15 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 94 :ETMELLHAI 2czrA 8 :GTKKVYTQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26246 # 1uhvA.94.33 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 94 :ETMELLHAI 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26247 # 1h6gA.94.171 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 94 :ETMELLHAI 1h6gA 548 :RAARVIHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26248 # 1fi4A.94.359 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 94 :ETMELLHAI 1fi4A 340 :EQLEAFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26249 # 1g8mA.94.127 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 94 :ETMELLHAI 1g8mA 128 :GGVALLRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26250 # 1e9rA.94.178 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 94 :ETMELLHAI 1e9rA 249 :ATFDDLRGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26251 # 1zs3A.94.153 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 94 :ETMELLHAI 1zs3A 154 :YNLQVIRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26252 # 1lc5A.94.275 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 94 :ETMELLHAI 1lc5A 276 :EGARFYQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26253 # 1wwjA.94.71 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 94 :ETMELLHAI 1wwjA 72 :PVRKIIGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26254 # 1qtwA.94.46 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 94 :ETMELLHAI 1qtwA 47 :QTIDEFKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26255 # 1uq5A.94.205 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 94 :ETMELLHAI 1uq5A 210 :SWGRLSTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26256 # 1lniA.94.13 read from T0287.t06.many.frag # found chain 1lniA in training set T0287 94 :ETMELLHAI 1lniA 14 :EATDTLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26257 # 1lycA.94.96 read from T0287.t06.many.frag # found chain 1lycA in training set T0287 94 :ETMELLHAI 1lycA 97 :DTVEALRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26258 # 1fobA.94.112 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 94 :ETMELLHAI 1fobA 113 :YTLEVCNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26259 # 1q6uA.94.101 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 94 :ETMELLHAI 1q6uA 102 :KGKEYREKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26260 # 1g61A.94.78 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 94 :ETMELLHAI 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26261 # 1a4iA.94.79 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 94 :ETMELLHAI 1a4iA 80 :EVMKYITSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26262 # 1m2oA.94.554 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 94 :ETMELLHAI 1m2oA 555 :TLIKLCQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26263 # 1wgzA.94.190 read from T0287.t06.many.frag # found chain 1wgzA in template set T0287 94 :ETMELLHAI 1wgzA 191 :GLKGLLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26264 # 1jftA.94.29 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 94 :ETMELLHAI 1jftA 31 :ETRNAVWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26265 # 1l5aA.94.217 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 94 :ETMELLHAI 1l5aA 218 :QLNHLLLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26266 # 1vpbA.94.139 read from T0287.t06.many.frag # found chain 1vpbA in training set T0287 94 :ETMELLHAI 1vpbA 128 :DKIEMAKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26267 # 2ccyA.94.91 read from T0287.t06.many.frag # found chain 2ccyA in training set T0287 94 :ETMELLHAI 2ccyA 92 :ESTKLAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26268 # 1hw1A.95.218 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. T0287 95 :TMELL 1hw1A 219 :SGEIW T0287 101 :AIA 1hw1A 225 :RMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26270 # 1k5nA.95.163 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 95 :TMELLHAIA 1k5nA 164 :CVEWLRRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26271 # 1y1pA.95.110 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 95 :TMELLHAIA 1y1pA 112 :TLNALRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26272 # 1q92A.95.56 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 95 :TMELLHAIA 1q92A 88 :LSEKAISIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26273 # 1g8mA.95.128 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 95 :TMELLHAIA 1g8mA 129 :GVALLRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26274 # 1uq5A.95.206 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 95 :TMELLHAIA 1uq5A 211 :WGRLSTAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26275 # 1h6gA.95.172 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 95 :TMELLHAIA 1h6gA 549 :AARVIHVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26276 # 1zs3A.95.154 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 95 :TMELLHAIA 1zs3A 155 :NLQVIRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26277 # 2fkcA.95.156 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 Warning: unaligning (T0287)I102 (2fkcA)I164 because G (3-10) conformation "forbidden" or filtered. T0287 96 :MELLHA 2fkcA 158 :VLVLTD T0287 103 :A 2fkcA 165 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=26279 # 1uhvA.95.34 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 95 :TMELLHAIA 1uhvA 35 :YIETLKYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26280 # 1lc5A.95.276 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 95 :TMELLHAIA 1lc5A 277 :GARFYQALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26281 # 1zz1A.95.79 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 95 :TMELLHAIA 1zz1A 80 :HLENMKRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26282 # 1fi4A.95.360 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 95 :TMELLHAIA 1fi4A 341 :QLEAFNHQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26283 # 2czrA.95.16 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 95 :TMELLHAIA 2czrA 9 :TKKVYTQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26284 # 1lniA.95.14 read from T0287.t06.many.frag # found chain 1lniA in training set T0287 95 :TMELLHAIA 1lniA 15 :ATDTLNLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26285 # 1jx4A.95.220 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 95 :TMELLHAIA 1jx4A 221 :KAKYLISLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26286 # 1q6uA.95.102 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 95 :TMELLHAIA 1q6uA 103 :GKEYREKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26287 # 1qtwA.95.47 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 95 :TMELLHAIA 1qtwA 48 :TIDEFKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26288 # 1q79A.95.397 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 95 :TMELLHAIA 1q79A 398 :IRILVGSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26289 # 1vpbA.95.140 read from T0287.t06.many.frag # found chain 1vpbA in training set T0287 95 :TMELLHAIA 1vpbA 129 :KIEMAKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26290 # 1wgzA.95.191 read from T0287.t06.many.frag # found chain 1wgzA in template set T0287 95 :TMELLHAIA 1wgzA 192 :LKGLLDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26291 # 1lycA.95.97 read from T0287.t06.many.frag # found chain 1lycA in training set T0287 95 :TMELLHAIA 1lycA 98 :TVEALRAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26292 # 1fobA.95.113 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 95 :TMELLHAIA 1fobA 114 :TLEVCNTFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26293 # 1wa5C.95.311 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 95 :TMELLHAIA 1wa5C 312 :SLSFLTAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26294 # 1jftA.95.30 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 95 :TMELLHAIA 1jftA 32 :TRNAVWAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26295 # 1gxqA.95.35 read from T0287.t06.many.frag # found chain 1gxqA in template set T0287 95 :TMELLHAIA 1gxqA 159 :EFKLLHFFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26296 # 1e9rA.95.179 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 95 :TMELLHAIA 1e9rA 250 :TFDDLRGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26297 # 3nul.95.44 read from T0287.t06.many.frag # found chain 3nul in training set T0287 95 :TMELLHAIA 3nul 46 :EIDGIKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26298 # 1m2oA.95.555 read from T0287.t06.many.frag # found chain 1m2oA in template set Warning: unaligning (T0287)A103 (1m2oA)A564 because P (beta_P) conformation "forbidden" or filtered. T0287 95 :TMELLHAI 1m2oA 556 :LIKLCQKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=26299 # 1a4iA.95.80 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 95 :TMELLHAIA 1a4iA 81 :VMKYITSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26300 # 1y1pA.96.111 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 96 :MELLHAIAE 1y1pA 113 :LNALRAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26301 # 1hw1A.96.219 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 96 :MELLHAIAE 1hw1A 220 :GEIWHRMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26302 # 1k5nA.96.164 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 96 :MELLHAIAE 1k5nA 165 :VEWLRRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26303 # 1q92A.96.57 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 96 :MELLHAIAE 1q92A 89 :SEKAISIWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26304 # 1g8mA.96.129 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 96 :MELLHAIAE 1g8mA 130 :VALLRAAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26305 # 1zz1A.96.80 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 96 :MELLHAIAE 1zz1A 81 :LENMKRVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26306 # 1uhvA.96.35 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 96 :MELLHAIAE 1uhvA 36 :IETLKYVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26307 # 1zs3A.96.155 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 96 :MELLHAIAE 1zs3A 156 :LQVIRNLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26308 # 1uq5A.96.207 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 96 :MELLHAIAE 1uq5A 212 :GRLSTAIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26309 # 1lc5A.96.277 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 96 :MELLHAIAE 1lc5A 278 :ARFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26310 # 1fi4A.96.361 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 96 :MELLHAIAE 1fi4A 342 :LEAFNHQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26311 # 1q6uA.96.103 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 96 :MELLHAIAE 1q6uA 104 :KEYREKFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26312 # 1qtwA.96.48 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 96 :MELLHAIAE 1qtwA 49 :IDEFKAACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26313 # 1wa5C.96.312 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 96 :MELLHAIAE 1wa5C 313 :LSFLTAVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26314 # 2fkcA.96.157 read from T0287.t06.many.frag # found chain 2fkcA in template set T0287 96 :MELLHAIAE 2fkcA 158 :VLVLTDILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26315 # 3nul.96.45 read from T0287.t06.many.frag # found chain 3nul in training set T0287 96 :MELLHAIAE 3nul 47 :IDGIKKDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26316 # 1h6gA.96.173 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 96 :MELLHAIAE 1h6gA 550 :ARVIHVVTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26317 # 1lycA.96.98 read from T0287.t06.many.frag # found chain 1lycA in training set T0287 96 :MELLHAIAE 1lycA 99 :VEALRAVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26318 # 1q79A.96.398 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 96 :MELLHAIAE 1q79A 399 :RILVGSLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26319 # 1jx4A.96.221 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 96 :MELLHAIAE 1jx4A 222 :AKYLISLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26320 # 1vpbA.96.141 read from T0287.t06.many.frag # found chain 1vpbA in training set T0287 96 :MELLHAIAE 1vpbA 130 :IEMAKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26321 # 1lniA.96.15 read from T0287.t06.many.frag # found chain 1lniA in training set T0287 96 :MELLHAIAE 1lniA 16 :TDTLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26322 # 1jftA.96.31 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 96 :MELLHAIAE 1jftA 33 :RNAVWAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26323 # 1zl0A.96.68 read from T0287.t06.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)A103 (1zl0A)F74 because G (3-10) conformation "forbidden" or filtered. T0287 96 :MELLHAI 1zl0A 67 :LEDLHNA T0287 104 :E 1zl0A 75 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26325 # 1gxqA.96.36 read from T0287.t06.many.frag # found chain 1gxqA in template set T0287 96 :MELLHAIAE 1gxqA 160 :FKLLHFFMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26326 # 2czrA.96.17 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 96 :MELLHAIAE 2czrA 10 :KKVYTQVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26327 # 1a4iA.96.81 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 96 :MELLHAIAE 1a4iA 82 :MKYITSLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26328 # 2bptA.96.681 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 96 :MELLHAIAE 2bptA 682 :MNVLAQMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26329 # 1wgzA.96.192 read from T0287.t06.many.frag # found chain 1wgzA in template set T0287 96 :MELLHAIAE 1wgzA 193 :KGLLDRILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26330 # 1fobA.96.114 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 96 :MELLHAIAE 1fobA 115 :LEVCNTFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26331 # 1y1pA.97.112 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 97 :ELLHAIAEN 1y1pA 114 :NALRAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26332 # 1q92A.97.58 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 97 :ELLHAIAEN 1q92A 90 :EKAISIWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26333 # 1k5nA.97.165 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 97 :ELLHAIAEN 1k5nA 166 :EWLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26334 # 1hw1A.97.220 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. T0287 97 :ELL 1hw1A 221 :EIW T0287 101 :AIAEN 1hw1A 225 :RMQKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26336 # 1uhvA.97.36 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 97 :ELLHAIAEN 1uhvA 37 :ETLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26337 # 1lc5A.97.278 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 97 :ELLHAIAEN 1lc5A 279 :RFYQALCQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26338 # 1zz1A.97.81 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 97 :ELLHAIAEN 1zz1A 82 :ENMKRVSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26339 # 1q79A.97.399 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 97 :ELLHAIAEN 1q79A 400 :ILVGSLEKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26340 # 1g8mA.97.130 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 97 :ELLHAIAEN 1g8mA 131 :ALLRAAAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26341 # 1uq5A.97.208 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 97 :ELLHAIAEN 1uq5A 213 :RLSTAIQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26342 # 1zs3A.97.156 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 97 :ELLHAIAEN 1zs3A 157 :QVIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26343 # 2czrA.97.18 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 97 :ELLHAIAEN 2czrA 11 :KVYTQVRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26344 # 1wa5C.97.313 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 97 :ELLHAIAEN 1wa5C 314 :SFLTAVTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26345 # 1q6uA.97.104 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 97 :ELLHAIAEN 1q6uA 105 :EYREKFAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26346 # 1n5uA.97.258 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 97 :ELLHAIAEN 1n5uA 259 :DLAKYICEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26347 # 1lniA.97.16 read from T0287.t06.many.frag # found chain 1lniA in training set T0287 97 :ELLHAIAEN 1lniA 17 :DTLNLIASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26348 # 3nul.97.46 read from T0287.t06.many.frag # found chain 3nul in training set T0287 97 :ELLHAIAEN 3nul 48 :DGIKKDFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26349 # 1zl0A.97.69 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 97 :ELLHAIAEN 1zl0A 68 :EDLHNAFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26350 # 1h6gA.97.174 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 97 :ELLHAIAEN 1h6gA 551 :RVIHVVTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26351 # 1fi4A.97.362 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 97 :ELLHAIAEN 1fi4A 343 :EAFNHQFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26352 # 1g5aA.97.80 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 97 :ELLHAIAEN 1g5aA 81 :DIDIARENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26353 # 1gxqA.97.37 read from T0287.t06.many.frag # found chain 1gxqA in template set Warning: unaligning (T0287)H100 (1gxqA)H164 because H (helix) conformation "forbidden" or filtered. T0287 97 :ELL 1gxqA 161 :KLL T0287 101 :AIAEN 1gxqA 165 :FFMTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26355 # 1vpbA.97.142 read from T0287.t06.many.frag # found chain 1vpbA in training set T0287 97 :ELLHAIAEN 1vpbA 131 :EMAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26356 # 1qtwA.97.49 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 97 :ELLHAIAEN 1qtwA 50 :DEFKAACEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26357 # 1w79A.97.6 read from T0287.t06.many.frag # found chain 1w79A in template set T0287 97 :ELLHAIAEN 1w79A 7 :EDIDAILED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26358 # 1a4iA.97.82 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 97 :ELLHAIAEN 1a4iA 83 :KYITSLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26359 # 1t1vA.97.47 read from T0287.t06.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 97 :ELLHAIA 1t1vA 48 :DEMRTLA T0287 105 :N 1t1vA 56 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=26361 # 1kpsB.97.140 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 97 :ELLHAIAEN 1kpsB 559 :PLLLAFVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26362 # 1jftA.97.32 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 97 :ELLHAIAEN 1jftA 34 :NAVWAAIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26363 # 1colA.97.60 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELL 1colA 61 :ASL T0287 102 :IAE 1colA 66 :ITA Number of specific fragments extracted= 2 number of extra gaps= 2 total=26365 # 1y1pA.98.113 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 98 :LLHAIAENP 1y1pA 115 :ALRAAAATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26366 # 1q92A.98.59 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 98 :LLHAIAENP 1q92A 91 :KAISIWESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26367 # 1n5uA.98.259 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 98 :LLHAIAENP 1n5uA 260 :LAKYICENQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26368 # 1k5nA.98.166 read from T0287.t06.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1k5nA 167 :WLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26369 # 1uhvA.98.37 read from T0287.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1uhvA 38 :TLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26370 # 1zz1A.98.82 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 98 :LLHAIAENP 1zz1A 83 :NMKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26371 # 3nul.98.47 read from T0287.t06.many.frag # found chain 3nul in training set T0287 98 :LLHAIAENP 3nul 49 :GIKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26372 # 1g5aA.98.81 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 98 :LLHAIAENP 1g5aA 82 :IDIARENNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26373 # 1lc5A.98.279 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 98 :LLHAIAENP 1lc5A 280 :FYQALCQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26374 # 1t1vA.98.48 read from T0287.t06.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 98 :LLHAIA 1t1vA 49 :EMRTLA T0287 105 :NP 1t1vA 56 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26376 # 1kpsB.98.141 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 98 :LLHAIAENP 1kpsB 560 :LLLAFVTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26377 # 1colA.98.61 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 98 :LL 1colA 62 :SL T0287 102 :IAENP 1colA 66 :ITANP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26379 # 1q79A.98.400 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 98 :LLHAIAENP 1q79A 401 :LVGSLEKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26380 # 1g8mA.98.131 read from T0287.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0287)N105 (1g8mA)N139 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1g8mA 132 :LLRAAAK T0287 106 :P 1g8mA 140 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=26382 # 1hw1A.98.221 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 because last residue in template chain is (1hw1A)L230 T0287 98 :LL 1hw1A 222 :IW T0287 101 :AIAEN 1hw1A 225 :RMQKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26384 # 1a4iA.98.83 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 98 :LLHAIAENP 1a4iA 84 :YITSLNEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26385 # 1wa5C.98.314 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 98 :LLHAIAENP 1wa5C 315 :FLTAVTRIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26386 # 1f74A.98.149 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 98 :LLHAIAENP 1f74A 150 :QFGELYKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26387 # 1q6uA.98.105 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 98 :LLHAIAENP 1q6uA 106 :YREKFAKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26388 # 1zs3A.98.157 read from T0287.t06.many.frag # found chain 1zs3A in template set Warning: unaligning (T0287)P106 (1zs3A)L166 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1zs3A 158 :VIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26389 # 1lniA.98.17 read from T0287.t06.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)N105 (1lniA)D25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 T0287 98 :LLHAIAE 1lniA 18 :TLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26390 # 1uq5A.98.209 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 98 :LLHAIAENP 1uq5A 214 :LSTAIQESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26391 # 1zl0A.98.70 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 98 :LLHAIAENP 1zl0A 69 :DLHNAFDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26392 # 1fi4A.98.363 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 98 :LLHAIAENP 1fi4A 344 :AFNHQFESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26393 # 1w79A.98.7 read from T0287.t06.many.frag # found chain 1w79A in template set T0287 98 :LLHAIAENP 1w79A 8 :DIDAILEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26394 # 2czrA.98.19 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 98 :LLHAIAENP 2czrA 12 :VYTQVRYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26395 # 1h80A.98.44 read from T0287.t06.many.frag # found chain 1h80A in training set T0287 98 :LLHAIAENP 1h80A 72 :AINAISRKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26396 # 1gxqA.98.38 read from T0287.t06.many.frag # found chain 1gxqA in template set Warning: unaligning (T0287)H100 (1gxqA)H164 because H (helix) conformation "forbidden" or filtered. T0287 98 :LL 1gxqA 162 :LL T0287 101 :AIAENP 1gxqA 165 :FFMTHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26398 # 1no7A.98.162 read from T0287.t06.many.frag # found chain 1no7A in template set T0287 98 :LLHAIAENP 1no7A 613 :AVRGAFDDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26399 # 1vpbA.98.143 read from T0287.t06.many.frag # found chain 1vpbA in training set Warning: unaligning (T0287)P106 (1vpbA)A140 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1vpbA 132 :MAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26400 # 1q92A.99.60 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 99 :LHAIAENPN 1q92A 92 :AISIWESKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26401 # 1y1pA.99.114 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 99 :LHAIAENPN 1y1pA 116 :LRAAAATPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26402 # 1n5uA.99.260 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1n5uA 261 :AKYICE T0287 106 :PN 1n5uA 268 :QD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26404 # 1g5aA.99.82 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N107 (1g5aA)D91 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1g5aA 83 :DIARENNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26405 # 3nul.99.48 read from T0287.t06.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 3nul 50 :IKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26406 # 1colA.99.62 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 99 :L 1colA 63 :L T0287 102 :IAENPN 1colA 66 :ITANPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26408 # 1f74A.99.150 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 99 :LHAIAENPN 1f74A 151 :FGELYKNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26409 # 1lc5A.99.280 read from T0287.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N107 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1lc5A 281 :YQALCQLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26410 # 1zz1A.99.83 read from T0287.t06.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 T0287 99 :LHAIAENP 1zz1A 84 :MKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26411 # 1t1vA.99.49 read from T0287.t06.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIA 1t1vA 50 :MRTLA T0287 105 :NPN 1t1vA 56 :NPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26413 # 1kpsB.99.142 read from T0287.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1kpsB 561 :LLAFVTKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26414 # 1uhvA.99.38 read from T0287.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1uhvA 39 :LKYVKEN T0287 107 :N 1uhvA 47 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26416 # 1k5nA.99.167 read from T0287.t06.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1k5nA 168 :LRRYLEN T0287 107 :N 1k5nA 176 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=26418 # 1h80A.99.45 read from T0287.t06.many.frag # found chain 1h80A in training set T0287 99 :LHAIAENPN 1h80A 73 :INAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26419 # 1a4iA.99.84 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 99 :LHAIAENPN 1a4iA 85 :ITSLNEDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=26420 # 1q79A.99.401 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 99 :LHAIAENPN 1q79A 402 :VGSLEKNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26421 # 1g8mA.99.132 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 99 :LHAIAENPN 1g8mA 133 :LRAAAKNHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26422 # 1q6uA.99.106 read from T0287.t06.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N105 (1q6uA)E113 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1q6uA 107 :REKFAK T0287 106 :PN 1q6uA 114 :KG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26424 # 1gvjA.99.79 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIA 1gvjA 375 :WGKRK T0287 105 :NPN 1gvjA 381 :KPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26426 # 2ffsA.99.28 read from T0287.t06.many.frag # found chain 2ffsA in template set T0287 99 :LHAIAENPN 2ffsA 29 :LVCRAREPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26427 # 1fi4A.99.364 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1fi4A 345 :FNHQFESS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26428 # 1wa5C.99.315 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 99 :LHAIAENPN 1wa5C 316 :LTAVTRIPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26429 # 1zl0A.99.71 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 99 :LHAIAENPN 1zl0A 70 :LHNAFDMPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26430 # 1rloA.99.92 read from T0287.t06.many.frag # found chain 1rloA in template set T0287 99 :LHAIAENPN 1rloA 93 :IGELLKDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26431 # 1z5zA.99.155 read from T0287.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0287)N105 (1z5zA)N797 because D (zeta) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1z5zA 791 :ISKFQN T0287 106 :PN 1z5zA 798 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26433 # 1ye8A.99.121 read from T0287.t06.many.frag # found chain 1ye8A in training set T0287 99 :LHAIAENPN 1ye8A 122 :VRQIMHDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26434 # 1vjhA.99.20 read from T0287.t06.many.frag # found chain 1vjhA in template set T0287 99 :LHAIAENPN 1vjhA 21 :FSAFVEDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26435 # 1uq5A.99.210 read from T0287.t06.many.frag # found chain 1uq5A in training set Warning: unaligning (T0287)N105 (1uq5A)S221 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1uq5A 215 :STAIQE T0287 106 :PN 1uq5A 222 :NQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26437 # 1lniA.99.18 read from T0287.t06.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1lniA)P27 T0287 99 :LHAIAEN 1lniA 19 :LNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26438 # 1w79A.99.8 read from T0287.t06.many.frag # found chain 1w79A in template set T0287 99 :LHAIAENPN 1w79A 9 :IDAILEDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26439 # 3nul.100.49 read from T0287.t06.many.frag # found chain 3nul in training set T0287 100 :HAIAENPNF 3nul 51 :KKDFEEPGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26440 # 1n5uA.100.261 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAE 1n5uA 262 :KYICE T0287 106 :PNF 1n5uA 268 :QDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26442 # 1g5aA.100.83 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 100 :HAIAENPNF 1g5aA 84 :IARENNPDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26443 # 1y1pA.100.115 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 100 :HAIAENPNF 1y1pA 117 :RAAAATPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26444 # 1q92A.100.61 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 100 :HAIAENPNF 1q92A 93 :ISIWESKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26445 # 2ffsA.100.29 read from T0287.t06.many.frag # found chain 2ffsA in template set T0287 100 :HAIAENPNF 2ffsA 30 :VCRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26446 # 1gvjA.100.80 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIA 1gvjA 376 :GKRK T0287 105 :NPNF 1gvjA 381 :KPKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26448 # 1f74A.100.151 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 100 :HAIAENPNF 1f74A 152 :GELYKNPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26449 # 1colA.100.63 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1colA 66 :ITA T0287 106 :PNF 1colA 70 :PAM Number of specific fragments extracted= 2 number of extra gaps= 2 total=26451 # 1kpsB.100.143 read from T0287.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1kpsB 562 :LAFVTKP T0287 108 :F 1kpsB 570 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26453 # 1yw4A.100.236 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 100 :HAIAENPNF 1yw4A 237 :RGLLSNPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26454 # 1zz1A.100.84 read from T0287.t06.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 T0287 100 :HAIAENP 1zz1A 85 :KRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26455 # 1k5nA.100.168 read from T0287.t06.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1k5nA 169 :RRYLEN T0287 107 :NF 1k5nA 176 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26457 # 1z5zA.100.156 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 100 :HAIAENPNF 1z5zA 792 :SKFQNNPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26458 # 1g8mA.100.133 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 100 :HAIAENPNF 1g8mA 134 :RAAAKNHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26459 # 1fi4A.100.365 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 100 :HAIAENPNF 1fi4A 346 :NHQFESSNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26460 # 1t1vA.100.50 read from T0287.t06.many.frag # found chain 1t1vA in training set T0287 100 :HAIAENPNF 1t1vA 51 :RTLAGNPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26461 # 1h80A.100.46 read from T0287.t06.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)N107 (1h80A)N81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1h80A 74 :NAISRKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26462 # 2bptA.100.685 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 100 :HAIAENPNF 2bptA 686 :AQMISNPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26463 # 1lc5A.100.281 read from T0287.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N107 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1lc5A 282 :QALCQLP T0287 108 :F 1lc5A 290 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26465 # 1a4iA.100.85 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 100 :HAIAENPNF 1a4iA 86 :TSLNEDSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26466 # 1q6uA.100.107 read from T0287.t06.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N105 (1q6uA)E113 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1q6uA 108 :EKFAK T0287 106 :PNF 1q6uA 114 :KGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26468 # 1l0bA.100.23 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1l0bA 1612 :QKFAEK T0287 107 :NF 1l0bA 1619 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26470 # 1zl0A.100.72 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 100 :HAIAENPNF 1zl0A 71 :HNAFDMPDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26471 # 1vjhA.100.21 read from T0287.t06.many.frag # found chain 1vjhA in template set T0287 100 :HAIAENPNF 1vjhA 22 :SAFVEDTNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26472 # 1z7xW.100.418 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 100 :HAIAENPNF 1z7xW 418 :VESVRQPGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26473 # 1ye8A.100.122 read from T0287.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1ye8A)N130 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAE 1ye8A 123 :RQIMH T0287 106 :P 1ye8A 129 :P T0287 108 :F 1ye8A 131 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26476 # 1l9vA.100.114 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 100 :HAIAENPNF 1l9vA 115 :VIRKENPQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26477 # 1lu4A.100.47 read from T0287.t06.many.frag # found chain 1lu4A in training set T0287 100 :HAIAENPNF 1lu4A 1048 :QVAAANPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26478 # 1sra.100.44 read from T0287.t06.many.frag # found chain 1sra in template set T0287 100 :HAIAENPNF 1sra 180 :KKIHENEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26479 # 3nul.101.50 read from T0287.t06.many.frag # found chain 3nul in training set T0287 101 :AIAENPNFL 3nul 52 :KDFEEPGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26480 # 1g5aA.101.84 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 101 :AIAENPNFL 1g5aA 85 :ARENNPDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26481 # 1n5uA.101.262 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 101 :AIAENPNFL 1n5uA 263 :YICENQDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26482 # 2ffsA.101.30 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 T0287 101 :AIAENPNF 2ffsA 31 :CRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=26483 # 1gvjA.101.81 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENPNF 1gvjA 377 :KRKNKPKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=26484 # 1q92A.101.62 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAENP 1q92A 94 :SIWESK T0287 108 :FL 1q92A 101 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26486 # 1yw4A.101.237 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N105 (1yw4A)N242 because D (zeta) conformation "forbidden" or filtered. T0287 101 :AIAE 1yw4A 238 :GLLS T0287 106 :PNFL 1yw4A 243 :PQAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26488 # 1fi4A.101.366 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAENP 1fi4A 347 :HQFESS T0287 108 :FL 1fi4A 354 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26490 # 1kpsB.101.144 read from T0287.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAENP 1kpsB 563 :AFVTKP T0287 108 :FL 1kpsB 570 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26492 # 1colA.101.64 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 102 :IAENPNFL 1colA 66 :ITANPAMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26493 # 1f74A.101.152 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 101 :AIAENPNFL 1f74A 153 :ELYKNPKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26494 # 1y1pA.101.116 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 101 :AIAENPNFL 1y1pA 118 :AAAATPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26495 # 1w23A.101.313 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1w23A 314 :AKAKE T0287 107 :NFL 1w23A 320 :GFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26497 # 2bptA.101.686 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 101 :AIAENPNFL 2bptA 687 :QMISNPNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26498 # 1k5nA.101.169 read from T0287.t06.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1k5nA 170 :RYLEN T0287 107 :NFL 1k5nA 176 :KET Number of specific fragments extracted= 2 number of extra gaps= 1 total=26500 # 1lu4A.101.48 read from T0287.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N107 (1lu4A)A1055 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAENP 1lu4A 1049 :VAAANP T0287 108 :FL 1lu4A 1056 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26502 # 1g8mA.101.134 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 101 :AIAENPNFL 1g8mA 135 :AAAKNHARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26503 # 1z5zA.101.157 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 101 :AIAENPNFL 1z5zA 793 :KFQNNPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26504 # 1l0bA.101.24 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l0bA 1613 :KFAEK T0287 107 :NFL 1l0bA 1619 :RLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26506 # 1z7xW.101.419 read from T0287.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1z7xW 419 :ESVR T0287 106 :PNFL 1z7xW 424 :PGCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26508 # 1sra.101.45 read from T0287.t06.many.frag # found chain 1sra in template set T0287 101 :AIAENPNFL 1sra 181 :KIHENEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26509 # 1l9vA.101.115 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 101 :AIAENPNFL 1l9vA 116 :IRKENPQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26510 # 1vjhA.101.22 read from T0287.t06.many.frag # found chain 1vjhA in template set T0287 101 :AIAENPNFL 1vjhA 23 :AFVEDTNRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26511 # 1h80A.101.47 read from T0287.t06.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)N105 (1h80A)K79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1h80A)N81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. T0287 101 :AIAE 1h80A 75 :AISR T0287 106 :P 1h80A 80 :P T0287 109 :L 1h80A 83 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26514 # 1l8aA.101.418 read from T0287.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l8aA)N425 because L (left) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l8aA 419 :HIRDR T0287 108 :FL 1l8aA 426 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26516 # 1zl0A.101.73 read from T0287.t06.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)A103 (1zl0A)F74 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AI 1zl0A 72 :NA T0287 104 :ENPNFL 1zl0A 75 :DMPDIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26518 # 1uehA.101.159 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1uehA 160 :EKVQQ T0287 108 :FL 1uehA 167 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26520 # 1ye8A.101.123 read from T0287.t06.many.frag # found chain 1ye8A in training set T0287 101 :AIAENPNFL 1ye8A 124 :QIMHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26521 # 1sbxA.101.54 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 101 :AIAEN 1sbxA 141 :AVCDE T0287 108 :FL 1sbxA 148 :IY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26523 # 1zz1A.101.85 read from T0287.t06.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N105 (1zz1A)L90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 Warning: unaligning (T0287)L109 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAE 1zz1A 86 :RVSN T0287 106 :P 1zz1A 91 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=26525 # 3nul.102.51 read from T0287.t06.many.frag # found chain 3nul in training set T0287 102 :IAENPNFLF 3nul 53 :DFEEPGFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26526 # 1g5aA.102.85 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 102 :IAENPNFLF 1g5aA 86 :RENNPDWIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26527 # 1n5uA.102.263 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 102 :IAENPNFLF 1n5uA 264 :ICENQDSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26528 # 1gvjA.102.82 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IA 1gvjA 378 :RK T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :F 1gvjA 386 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=26531 # 2ffsA.102.31 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 102 :IAENPNF 2ffsA 32 :RAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=26532 # 1colA.102.65 read from T0287.t06.many.frag # found chain 1colA in template set T0287 102 :IAENPNFLF 1colA 66 :ITANPAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26533 # 1q92A.102.63 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 102 :IAENPNFLF 1q92A 95 :IWESKNFFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26534 # 1yw4A.102.238 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 102 :IAENPNFLF 1yw4A 239 :LLSNPQANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26535 # 1w23A.102.314 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1w23A 315 :KAKE T0287 107 :NFLF 1w23A 320 :GFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26537 # 1lu4A.102.49 read from T0287.t06.many.frag # found chain 1lu4A in training set T0287 102 :IAENPNFLF 1lu4A 1050 :AAANPAVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26538 # 1f74A.102.153 read from T0287.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)N105 (1f74A)N157 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1f74A 154 :LYK T0287 106 :PNFLF 1f74A 158 :PKVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26540 # 1kpsB.102.145 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 102 :IAENPNFLF 1kpsB 564 :FVTKPNGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26541 # 1z5zA.102.158 read from T0287.t06.many.frag # found chain 1z5zA in template set Warning: unaligning (T0287)N105 (1z5zA)N797 because D (zeta) conformation "forbidden" or filtered. T0287 102 :IAE 1z5zA 794 :FQN T0287 106 :PNFLF 1z5zA 798 :PSVKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26543 # 1fi4A.102.367 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N105 (1fi4A)S351 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAE 1fi4A 348 :QFE T0287 106 :PNFLF 1fi4A 352 :SNFTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26545 # 2bptA.102.687 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 102 :IAENPNFLF 2bptA 688 :MISNPNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26546 # 1y1pA.102.117 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 102 :IAENPNFLF 1y1pA 119 :AAATPSVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26547 # 1l9vA.102.116 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N105 (1l9vA)N120 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1l9vA 117 :RKE T0287 106 :PNFLF 1l9vA 121 :PQDIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26549 # 1z7xW.102.420 read from T0287.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1z7xW 420 :SVR T0287 106 :PNFLF 1z7xW 424 :PGCLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26551 # 1l0bA.102.25 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1l0bA 1614 :FAEK T0287 107 :NFLF 1l0bA 1619 :RLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26553 # 1zl0A.102.74 read from T0287.t06.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)N107 (1zl0A)D78 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAENP 1zl0A 73 :AFDMP T0287 108 :FLF 1zl0A 79 :ITA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26555 # 1sbxA.102.55 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1sbxA 142 :VCDE T0287 108 :FLF 1sbxA 148 :IYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26557 # 1sra.102.46 read from T0287.t06.many.frag # found chain 1sra in template set T0287 102 :IAENPNFLF 1sra 182 :IHENEKRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26558 # 1yt8A.102.452 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)N105 (1yt8A)K456 because E (beta_S) conformation "forbidden" or filtered. T0287 102 :IAE 1yt8A 453 :LSG T0287 106 :PNFLF 1yt8A 457 :PVFLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26560 # 1h80A.102.48 read from T0287.t06.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IAENPN 1h80A 76 :ISRKPN T0287 110 :F 1h80A 84 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=26562 # 1musA.102.62 read from T0287.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0287)N105 (1musA)N66 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1musA 63 :FIR T0287 106 :PNFLF 1musA 67 :PNVSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26564 # 1ye8A.102.124 read from T0287.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 T0287 102 :IAENPNFL 1ye8A 125 :IMHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26565 # 1rp0A.102.57 read from T0287.t06.many.frag # found chain 1rp0A in training set T0287 102 :IAENPNFLF 1rp0A 58 :ISKNPNVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26566 # 1uehA.102.160 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1uehA 161 :KVQQ T0287 107 :NFLF 1uehA 166 :NLQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26568 # 1l8aA.102.419 read from T0287.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l8aA)N425 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1l8aA 420 :IRDR T0287 108 :FLF 1l8aA 426 :VPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26570 # 1a4iA.102.87 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 102 :IAENPNFLF 1a4iA 88 :LNEDSTVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26571 # 3nul.103.52 read from T0287.t06.many.frag # found chain 3nul in training set T0287 103 :AENPNFLFS 3nul 54 :FEEPGFLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26572 # 1g5aA.103.86 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 103 :AENPNFLFS 1g5aA 87 :ENNPDWILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26573 # 1gvjA.103.83 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :AENPNF 1gvjA 379 :KNKPKM T0287 110 :FS 1gvjA 386 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26575 # 1n5uA.103.264 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 103 :AENPNFLFS 1n5uA 265 :CENQDSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26576 # 2ffsA.103.32 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 103 :AENPNF 2ffsA 33 :AREPQY T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26578 # 1yw4A.103.239 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N107 (1yw4A)Q244 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1yw4A 240 :LSNP T0287 108 :FLFS 1yw4A 245 :ANVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26580 # 1kpsB.103.146 read from T0287.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AENP 1kpsB 565 :VTKP T0287 108 :FLFS 1kpsB 570 :GALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26582 # 1z5zA.103.159 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 103 :AENPNFLFS 1z5zA 795 :QNNPSVKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26583 # 1lu4A.103.50 read from T0287.t06.many.frag # found chain 1lu4A in training set T0287 103 :AENPNFLFS 1lu4A 1051 :AANPAVTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26584 # 1colA.103.66 read from T0287.t06.many.frag # found chain 1colA in template set T0287 103 :AENPNFLFS 1colA 67 :TANPAMKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26585 # 1q92A.103.64 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 103 :AENPNFLFS 1q92A 96 :WESKNFFFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26586 # 1f74A.103.154 read from T0287.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)N107 (1f74A)K159 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1f74A 155 :YKNP T0287 108 :FLFS 1f74A 160 :VLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26588 # 1yt8A.103.453 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1yt8A 454 :S T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26590 # 1w23A.103.315 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AEN 1w23A 316 :AKE T0287 108 :FLFS 1w23A 321 :FVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26592 # 1l9vA.103.117 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 103 :AENPNFLFS 1l9vA 118 :KENPQDILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26593 # 1z7xW.103.421 read from T0287.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)S111 (1z7xW)E429 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENPNFLF 1z7xW 421 :VRQPGCLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26594 # 2bptA.103.688 read from T0287.t06.many.frag # found chain 2bptA in template set Warning: unaligning (T0287)N105 (2bptA)N691 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AE 2bptA 689 :IS T0287 106 :PNFLFS 2bptA 692 :PNARRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26596 # 1fi4A.103.368 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 103 :AENPNFLFS 1fi4A 349 :FESSNFTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26597 # 2jdxA.103.201 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AEN 2jdxA 239 :AAQ T0287 108 :FLFS 2jdxA 244 :FVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26599 # 1sbxA.103.56 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1sbxA 143 :CDE T0287 107 :NFLFS 1sbxA 147 :HIYCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26601 # 1l0bA.103.26 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1l0bA 1615 :AEK T0287 108 :FLFS 1l0bA 1620 :LALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26603 # 1eokA.103.18 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)A103 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N105 (1eokA)N21 because L (left) conformation "forbidden" or filtered. T0287 104 :E 1eokA 20 :R T0287 106 :PNFLFS 1eokA 22 :PTFKLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=26605 # 1ye8A.103.125 read from T0287.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N107 (1ye8A)N130 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1ye8A)V134 T0287 103 :AENP 1ye8A 126 :MHDP T0287 108 :FL 1ye8A 131 :VN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26607 # 1musA.103.63 read from T0287.t06.many.frag # found chain 1musA in template set T0287 103 :AENPNFLFS 1musA 64 :IRNPNVSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26608 # 1rlzA.103.213 read from T0287.t06.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1rlzA 214 :I T0287 105 :NPNFLFS 1rlzA 216 :NPESVYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26610 # 1oygA.103.31 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 103 :AENPNFLFS 1oygA 58 :QKNEKYQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26611 # 2f2gA.103.95 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 2f2gA 96 :GSK T0287 108 :FLFS 2f2gA 101 :VDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26613 # 1kcfA.103.198 read from T0287.t06.many.frag # found chain 1kcfA in template set Warning: unaligning (T0287)P106 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1kcfA 199 :IDG T0287 107 :NFLFS 1kcfA 203 :KILFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26615 # 1rp0A.103.58 read from T0287.t06.many.frag # found chain 1rp0A in training set Warning: unaligning (T0287)N107 (1rp0A)N63 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1rp0A 59 :SKNP T0287 108 :FLFS 1rp0A 64 :VQVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26617 # 1x9iA.103.8 read from T0287.t06.many.frag # found chain 1x9iA in training set T0287 103 :AENPNFLFS 1x9iA 9 :LNWENYILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26618 # 1gvjA.104.84 read from T0287.t06.many.frag # found chain 1gvjA in training set T0287 104 :ENPNFLFSK 1gvjA 380 :NKPKMNYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26619 # 3nul.104.53 read from T0287.t06.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENP 3nul 55 :EEP T0287 108 :FLFSK 3nul 59 :FLAPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26621 # 1yw4A.104.240 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1yw4A 241 :SNPQANVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26622 # 1n5uA.104.265 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 104 :ENPNFLFSK 1n5uA 266 :ENQDSISSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26623 # 1kpsB.104.147 read from T0287.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)K112 (1kpsB)T574 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1kpsB 566 :TKPNGALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26624 # 1g5aA.104.87 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 104 :ENPNFLFSK 1g5aA 88 :NNPDWILSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26625 # 2ffsA.104.33 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENPNF 2ffsA 34 :REPQY T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=26627 # 1z5zA.104.160 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 104 :ENPNFLFSK 1z5zA 796 :NNPSVKFIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26628 # 1eokA.104.19 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)K112 (1eokA)D28 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1eokA 20 :RNPTFKLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26629 # 1x9iA.104.9 read from T0287.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1x9iA 10 :NWENYILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26630 # 1z7xW.104.422 read from T0287.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :E 1z7xW 422 :R T0287 106 :PNFLFSK 1z7xW 424 :PGCLLEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26632 # 2jdxA.104.202 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 2jdxA 240 :AQ T0287 107 :NFLFSK 2jdxA 243 :KFVTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26634 # 1oygA.104.32 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 104 :ENPNFLFSK 1oygA 59 :KNEKYQVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26635 # 1q92A.104.65 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N105 (1q92A)S98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :E 1q92A 97 :E T0287 106 :P 1q92A 99 :K T0287 108 :FLFSK 1q92A 101 :FFFEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26638 # 1yt8A.104.454 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1yt8A 455 :GKPVFLLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26639 # 1sbxA.104.57 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1sbxA 144 :DE T0287 108 :FLFSK 1sbxA 148 :IYCSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26641 # 1lu4A.104.51 read from T0287.t06.many.frag # found chain 1lu4A in training set T0287 104 :ENPNFLFSK 1lu4A 1052 :ANPAVTFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26642 # 1colA.104.67 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F108 (1colA)M72 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENPN 1colA 68 :ANPA T0287 109 :LFSK 1colA 73 :KINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26644 # 1ox0A.104.105 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)N107 (1ox0A)N90 because L (left) conformation "forbidden" or filtered. T0287 104 :ENP 1ox0A 87 :NHA T0287 108 :FLFSK 1ox0A 91 :LDVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26646 # 1rlzA.104.214 read from T0287.t06.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 105 :NPNFLFSK 1rlzA 216 :NPESVYYW Number of specific fragments extracted= 1 number of extra gaps= 1 total=26647 # 1l9vA.104.118 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 104 :ENPNFLFSK 1l9vA 119 :ENPQDILFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26648 # 2f2gA.104.96 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 2f2gA 97 :SK T0287 107 :NFLFSK 2f2gA 100 :DVDFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=26650 # 1fi4A.104.369 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 104 :ENPNFLFSK 1fi4A 350 :ESSNFTARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26651 # 1tjvA.104.400 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 1tjvA 401 :ET T0287 107 :NFLFSK 1tjvA 404 :GITINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26653 # 1qlmA.104.269 read from T0287.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1qlmA 270 :EE T0287 108 :FLFSK 1qlmA 274 :YDFYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26655 # 1w23A.104.279 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)N282 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G283 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 280 :ES T0287 108 :FLFSK 1w23A 284 :FYVGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26657 # 1w23A.104.316 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 317 :KE T0287 107 :NFL 1w23A 320 :GFV T0287 111 :SK 1w23A 324 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=26660 # 1pea.104.301 read from T0287.t06.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1pea 302 :AA T0287 107 :NFLFSK 1pea 305 :NWRVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=26662 # 1musA.104.64 read from T0287.t06.many.frag # found chain 1musA in template set T0287 104 :ENPNFLFSK 1musA 65 :RNPNVSAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26663 # 1rz4A.104.55 read from T0287.t06.many.frag # found chain 1rz4A in template set T0287 104 :ENPNFLFSK 1rz4A 56 :FNPAFFQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26664 # 1yw4A.105.241 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 105 :NPNFLFSKF 1yw4A 242 :NPQANVPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26665 # 1gvjA.105.85 read from T0287.t06.many.frag # found chain 1gvjA in training set T0287 105 :NPNFLFSKF 1gvjA 381 :KPKMNYEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26666 # 1oygA.105.33 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)N105 (1oygA)N60 because P (beta_P) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1oygA 61 :EKYQVPEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26667 # 1n5uA.105.266 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 105 :NPNFLFSKF 1n5uA 267 :NQDSISSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26668 # 1ox0A.105.106 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)K112 (1ox0A)A95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 T0287 105 :NPNFLFS 1ox0A 88 :HANLDVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26669 # 1sbxA.105.58 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1sbxA 145 :E T0287 108 :FLFSKF 1sbxA 148 :IYCSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26671 # 1eokA.105.20 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)K112 (1eokA)D28 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1eokA 21 :NPTFKLK T0287 113 :F 1eokA 29 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=26673 # 1x9iA.105.10 read from T0287.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1x9iA 11 :WENYILR T0287 113 :F 1x9iA 19 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26675 # 2ffsA.105.34 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 105 :NPNF 2ffsA 35 :EPQY T0287 111 :SKF 2ffsA 41 :VGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26677 # 1qlmA.105.270 read from T0287.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1qlmA 271 :E T0287 109 :LFSKF 1qlmA 275 :DFYKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26679 # 2jdxA.105.203 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. T0287 105 :N 2jdxA 241 :Q T0287 108 :FLFSKF 2jdxA 244 :FVTTEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26681 # 1tjvA.105.401 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1tjvA 402 :T T0287 107 :NFLFSKF 1tjvA 404 :GITINKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26683 # 2f2gA.105.97 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 105 :N 2f2gA 98 :K T0287 108 :FLFSKF 2f2gA 101 :VDFSTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26685 # 1w23A.105.317 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1w23A 318 :E T0287 108 :FLFSKF 1w23A 321 :FVGLNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26687 # 1pea.105.302 read from T0287.t06.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1pea 303 :A T0287 107 :NFLFSKF 1pea 305 :NWRVEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26689 # 1g5aA.105.88 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1g5aA)D91 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1g5aA)L94 because G (3-10) conformation "forbidden" or filtered. T0287 106 :P 1g5aA 90 :P T0287 108 :FL 1g5aA 92 :WI T0287 111 :SKF 1g5aA 95 :SNK Number of specific fragments extracted= 3 number of extra gaps= 3 total=26692 # 1fi4A.105.370 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 105 :NPNFLFSKF 1fi4A 351 :SSNFTAREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26693 # 1zvdA.105.240 read from T0287.t06.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)F110 (1zvdA)L614 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NPNFL 1zvdA 609 :IPQHL T0287 111 :SKF 1zvdA 615 :KTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26695 # 3nul.105.54 read from T0287.t06.many.frag # found chain 3nul in training set Warning: unaligning (T0287)K112 (3nul)T63 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 3nul 56 :EPGFLAP T0287 113 :F 3nul 64 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26697 # 1kpsB.105.148 read from T0287.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NP 1kpsB 567 :KP T0287 108 :FLFSKF 1kpsB 570 :GALETC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26699 # 1rz4A.105.56 read from T0287.t06.many.frag # found chain 1rz4A in template set T0287 105 :NPNFLFSKF 1rz4A 57 :NPAFFQTTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26700 # 1yt8A.105.455 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)N107 (1yt8A)V458 because E (beta_S) conformation "forbidden" or filtered. T0287 105 :NP 1yt8A 456 :KP T0287 108 :FLFSKF 1yt8A 459 :FLLDGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26702 # 1uehA.105.163 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1uehA 164 :Q T0287 107 :NFLFSKF 1uehA 166 :NLQPDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26704 # 2b59B.105.152 read from T0287.t06.many.frag # found chain 2b59B in template set T0287 105 :NPNFLFSKF 2b59B 153 :HFGATSSDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26705 # 1u8xX.105.455 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 T0287 105 :N 1u8xX 433 :A T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26708 # 1z7xW.105.423 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 105 :NPNFLFSKF 1z7xW 423 :QPGCLLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26709 # 1colA.105.68 read from T0287.t06.many.frag # found chain 1colA in template set T0287 105 :NPNFLFSKF 1colA 69 :NPAMKINKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26710 # 1s4nA.105.203 read from T0287.t06.many.frag # found chain 1s4nA in template set T0287 105 :NPNFLFSKF 1s4nA 298 :NPEYLDENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26711 # 1wteA.105.97 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N105 (1wteA)N98 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. T0287 106 :P 1wteA 99 :E T0287 108 :FLFSKF 1wteA 101 :FIHPCF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26713 # 1oqjA.105.76 read from T0287.t06.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1oqjA 162 :S T0287 107 :NFLFSKF 1oqjA 164 :QIDFYQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26715 # 1ox0A.106.107 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 106 :PNFLFSK 1ox0A 89 :ANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26716 # 1oygA.106.34 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 106 :PNFLFSKFD 1oygA 61 :EKYQVPEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26717 # 1yw4A.106.242 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1yw4A 243 :PQANVP T0287 113 :FD 1yw4A 250 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26719 # 1gvjA.106.86 read from T0287.t06.many.frag # found chain 1gvjA in training set T0287 106 :PNFLFSKFD 1gvjA 382 :PKMNYEKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26720 # 1n5uA.106.267 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F110 (1n5uA)S272 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFL 1n5uA 268 :QDSI T0287 111 :SKFD 1n5uA 273 :SKLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26722 # 1zvdA.106.241 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 106 :PNFLFSKFD 1zvdA 610 :PQHLLKTFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26723 # 1eokA.106.21 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)D114 (1eokA)P30 because P (beta_P) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1eokA 22 :PTFKLKDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26724 # 1sbxA.106.59 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1sbxA 147 :HIYCSRCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26725 # 1x9iA.106.11 read from T0287.t06.many.frag # found chain 1x9iA in training set T0287 106 :PNFLFSKFD 1x9iA 12 :ENYILRRVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26726 # 1pea.106.303 read from T0287.t06.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1pea 305 :NWRVEDVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=26727 # 2f2gA.106.98 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 2f2gA 100 :DVDFSTVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26728 # 1qlmA.106.271 read from T0287.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1qlmA 273 :DYDFYKID Number of specific fragments extracted= 1 number of extra gaps= 1 total=26729 # 1tjvA.106.402 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1tjvA 404 :GITINKLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26730 # 2jdxA.106.204 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 2jdxA 244 :FVTTEF Number of specific fragments extracted= 1 number of extra gaps= 2 total=26731 # 1odmA.106.167 read from T0287.t06.many.frag # found chain 1odmA in training set T0287 106 :PNFLFSKFD 1odmA 168 :ENFFARHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26732 # 1uehA.106.164 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1uehA)D173 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1uehA 166 :NLQPDQI Number of specific fragments extracted= 1 number of extra gaps= 2 total=26733 # 1t4bA.106.210 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)P106 (1t4bA)G211 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1t4bA 212 :ELPVDNF Number of specific fragments extracted= 1 number of extra gaps= 2 total=26734 # 2ffsA.106.35 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :PNF 2ffsA 36 :PQY T0287 111 :S 2ffsA 41 :V T0287 113 :FD 2ffsA 43 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26737 # 1yt8A.106.456 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1yt8A 457 :PVFLLD T0287 113 :FD 1yt8A 464 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26739 # 1pkhA.106.14 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)P106 (1pkhA)K15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FD 1pkhA 22 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26741 # 2b59B.106.153 read from T0287.t06.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :P 2b59B 154 :F T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26743 # 1fi4A.106.371 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLF 1fi4A 352 :SNFTA T0287 112 :KFD 1fi4A 358 :ELD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26745 # 1u8xX.106.456 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)K112 (1u8xX)E440 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 T0287 107 :NFL 1u8xX 435 :KDF T0287 113 :F 1u8xX 441 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=26747 # 1w23A.106.318 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFL 1w23A 320 :GFV T0287 111 :SKFD 1w23A 324 :LNGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=26749 # 1u8xX.106.316 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 106 :P 1u8xX 294 :E T0287 109 :L 1u8xX 297 :I T0287 113 :FD 1u8xX 301 :CD Number of specific fragments extracted= 3 number of extra gaps= 2 total=26752 # 1up8A.106.170 read from T0287.t06.many.frag # found chain 1up8A in template set T0287 106 :PNFLFSKFD 1up8A 170 :REIEFSEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26753 # 1qw9A.106.11 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 106 :PNFLF 1qw9A 12 :KDFKI T0287 113 :FD 1qw9A 19 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=26755 # 1wteA.106.98 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. T0287 106 :P 1wteA 99 :E T0287 108 :FLFSKFD 1wteA 101 :FIHPCFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26757 # 1s4nA.106.204 read from T0287.t06.many.frag # found chain 1s4nA in template set T0287 106 :PNFLFSKFD 1s4nA 299 :PEYLDENNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26758 # 1oqjA.106.77 read from T0287.t06.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :FD 1oqjA 170 :HD Number of specific fragments extracted= 2 number of extra gaps= 2 total=26760 # 1oygA.107.35 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)F108 (1oygA)Y63 because G (3-10) conformation "forbidden" or filtered. T0287 107 :N 1oygA 62 :K T0287 109 :LFSKFDR 1oygA 64 :QVPEFDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26762 # 1ox0A.107.108 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 107 :NFLFSK 1ox0A 90 :NLDVEA T0287 115 :R 1ox0A 98 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=26764 # 1zvdA.107.242 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 107 :NFLFSKFDR 1zvdA 611 :QHLLKTFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26765 # 1yw4A.107.243 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 107 :NFLFSKFDR 1yw4A 244 :QANVPDLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26766 # 1pkhA.107.15 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FDR 1pkhA 22 :FNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26768 # 1eokA.107.22 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)D114 (1eokA)P30 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1eokA 23 :TFKLKDI T0287 115 :R 1eokA 31 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26770 # 1tjvA.107.403 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1tjvA 404 :GITINKL T0287 115 :R 1tjvA 412 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26772 # 1qlmA.107.272 read from T0287.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKFDR 1qlmA 275 :DFYKIDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26773 # 1t4bA.107.211 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 107 :NFLFSKFDR 1t4bA 212 :ELPVDNFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26774 # 1sbxA.107.60 read from T0287.t06.many.frag # found chain 1sbxA in training set T0287 107 :NFLFSKFDR 1sbxA 147 :HIYCSRCTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26775 # 1pea.107.304 read from T0287.t06.many.frag # found chain 1pea in template set Warning: unaligning (T0287)N107 (1pea)N305 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1pea 306 :WRVEDVQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26776 # 1qw9A.107.12 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 107 :NFLF 1qw9A 13 :DFKI T0287 113 :FDR 1qw9A 19 :IDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26778 # 1n5uA.107.268 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F108 (1n5uA)S270 because G (3-10) conformation "forbidden" or filtered. T0287 107 :N 1n5uA 269 :D T0287 109 :LFSKFDR 1n5uA 271 :ISSKLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26780 # 1yt8A.107.457 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFS 1yt8A 458 :VFLLD T0287 113 :FDR 1yt8A 464 :GTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26782 # 1y93A.107.41 read from T0287.t06.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1y93A 146 :PLKFSKIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26783 # 1up8A.107.171 read from T0287.t06.many.frag # found chain 1up8A in template set T0287 107 :NFLFSKFDR 1up8A 171 :EIEFSEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26784 # 2f2gA.107.99 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2f2gA)V107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (2f2gA)P108 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKF 2f2gA 101 :VDFSTV Number of specific fragments extracted= 1 number of extra gaps= 2 total=26785 # 1x9iA.107.12 read from T0287.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1x9iA)D20 because E (beta_S) conformation "forbidden" or filtered. T0287 107 :NFLFS 1x9iA 13 :NYILR T0287 113 :F 1x9iA 19 :V T0287 115 :R 1x9iA 21 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=26788 # 1uehA.107.165 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)S111 (1uehA)D170 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLF 1uehA 166 :NLQP T0287 112 :KFDR 1uehA 171 :QIDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26790 # 1gvjA.107.87 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NF 1gvjA 383 :KM T0287 110 :FSKFDR 1gvjA 386 :YEKLSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26792 # 2b59B.107.154 read from T0287.t06.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 107 :NFLFSKFD 2b59B 155 :GATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26793 # 1w4sA.107.113 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)S111 (1w4sA)E1047 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLF 1w4sA 1043 :KLCP T0287 113 :FDR 1w4sA 1049 :FRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26795 # 1odmA.107.168 read from T0287.t06.many.frag # found chain 1odmA in training set T0287 107 :NFLFSKFDR 1odmA 169 :NFFARHFKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26796 # 1u8xX.107.317 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 109 :L 1u8xX 297 :I T0287 113 :FDR 1u8xX 301 :CDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=26798 # 1srvA.107.114 read from T0287.t06.many.frag # found chain 1srvA in template set T0287 107 :NFLFSKFDR 1srvA 306 :GFKLENATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26799 # 2jdxA.107.205 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 2jdxA 244 :FVTTEF T0287 115 :R 2jdxA 251 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=26801 # 1e4cP.107.43 read from T0287.t06.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)N107 (1e4cP)G44 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1e4cP 45 :IPYEKLTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26802 # 1oqjA.107.78 read from T0287.t06.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :FDR 1oqjA 170 :HDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26804 # 1rqpA.107.171 read from T0287.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1rqpA 172 :GFPLSEV T0287 115 :R 1rqpA 180 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=26806 # 1w23A.107.319 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FL 1w23A 321 :FV T0287 111 :SKFDR 1w23A 324 :LNGHR Number of specific fragments extracted= 2 number of extra gaps= 2 total=26808 # 1ox0A.108.109 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 108 :FLFSK 1ox0A 91 :LDVEA T0287 115 :RS 1ox0A 98 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26810 # 1oygA.108.36 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 108 :FLFSKFDRS 1oygA 63 :YQVPEFDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26811 # 1zvdA.108.243 read from T0287.t06.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1zvdA 612 :HLLKTF T0287 115 :RS 1zvdA 619 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26813 # 1qw9A.108.13 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 108 :FLF 1qw9A 14 :FKI T0287 113 :FDRS 1qw9A 19 :IDKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26815 # 1yw4A.108.244 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 108 :FLFSKFDRS 1yw4A 245 :ANVPDLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26816 # 1pkhA.108.16 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 108 :FLFS 1pkhA 17 :IIIK T0287 113 :FDRS 1pkhA 22 :FNKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26818 # 1tjvA.108.404 read from T0287.t06.many.frag # found chain 1tjvA in template set T0287 108 :FLFSKFDRS 1tjvA 405 :ITINKLSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26819 # 1t4bA.108.212 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1t4bA 213 :LPVDNF T0287 115 :RS 1t4bA 220 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26821 # 1eokA.108.23 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 108 :FLFSKFDRS 1eokA 24 :FKLKDIPDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26822 # 1y93A.108.42 read from T0287.t06.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1y93A)G155 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1y93A 147 :LKFSKIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26823 # 1qlmA.108.273 read from T0287.t06.many.frag # found chain 1qlmA in template set T0287 108 :FLFSKFDRS 1qlmA 274 :YDFYKIDPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26824 # 1sbxA.108.61 read from T0287.t06.many.frag # found chain 1sbxA in training set T0287 108 :FLFSKFDRS 1sbxA 148 :IYCSRCTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26825 # 1w4sA.108.114 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFS 1w4sA 1044 :LCPE T0287 113 :FDRS 1w4sA 1049 :FRDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26827 # 1up8A.108.172 read from T0287.t06.many.frag # found chain 1up8A in template set T0287 108 :FLFSKFDRS 1up8A 172 :IEFSEFDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26828 # 1srvA.108.115 read from T0287.t06.many.frag # found chain 1srvA in template set T0287 108 :FLFSKFDRS 1srvA 307 :FKLENATLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26829 # 1pe9A.108.286 read from T0287.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pe9A)S293 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFS 1pe9A 287 :FTIA T0287 113 :F 1pe9A 292 :L T0287 115 :RS 1pe9A 294 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=26832 # 1pea.108.305 read from T0287.t06.many.frag # found chain 1pea in template set T0287 108 :FLFSKFDRS 1pea 306 :WRVEDVQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26833 # 1e4cP.108.44 read from T0287.t06.many.frag # found chain 1e4cP in training set T0287 108 :FLFSKFDRS 1e4cP 45 :IPYEKLTES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26834 # 1uehA.108.166 read from T0287.t06.many.frag # found chain 1uehA in training set T0287 108 :FLFSKFDRS 1uehA 167 :LQPDQIDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26835 # 1rqpA.108.172 read from T0287.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1rqpA 173 :FPLSEV T0287 115 :RS 1rqpA 180 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26837 # 1yt8A.108.458 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFSK 1yt8A 459 :FLLDG T0287 114 :DRS 1yt8A 465 :TSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26839 # 2be1A.108.223 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 2be1A 334 :LLASDLDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26840 # 1n5uA.108.269 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 108 :FLFSKFDRS 1n5uA 270 :SISSKLKEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26841 # 1tt8A.108.103 read from T0287.t06.many.frag # found chain 1tt8A in training set T0287 108 :FLFSKFDRS 1tt8A 104 :LALQKLGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26842 # 1odmA.108.169 read from T0287.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0287)F113 (1odmA)F175 because D (zeta) conformation "forbidden" or filtered. T0287 108 :FLFSK 1odmA 170 :FFARH T0287 114 :DRS 1odmA 176 :KPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26844 # 1bkrA.108.21 read from T0287.t06.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFS 1bkrA 22 :VNIH T0287 113 :FDRS 1bkrA 27 :FTTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26846 # 2b59B.108.155 read from T0287.t06.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26847 # 1hs6A.108.481 read from T0287.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1hs6A 481 :DDLNSF T0287 115 :RS 1hs6A 488 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26849 # 1my7A.108.23 read from T0287.t06.many.frag # found chain 1my7A in training set Warning: unaligning (T0287)D114 (1my7A)Q220 because E (beta_S) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1my7A 214 :LLCDKV T0287 115 :RS 1my7A 221 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26851 # 1u8xX.108.458 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 T0287 108 :FL 1u8xX 436 :DF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26853 # 1ox0A.109.110 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 109 :LFSK 1ox0A 92 :DVEA T0287 115 :RSI 1ox0A 98 :RDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26855 # 1oygA.109.37 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)S111 (1oygA)P66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oygA)E67 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LF 1oygA 64 :QV T0287 113 :FDRSI 1oygA 68 :FDSST Number of specific fragments extracted= 2 number of extra gaps= 1 total=26857 # 1zvdA.109.244 read from T0287.t06.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFSKF 1zvdA 613 :LLKTF T0287 115 :RSI 1zvdA 619 :EKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26859 # 1qw9A.109.14 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 109 :LF 1qw9A 15 :KI T0287 113 :FDRSI 1qw9A 19 :IDKRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26861 # 1yw4A.109.245 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 109 :LFS 1yw4A 246 :NVP T0287 113 :FDRSI 1yw4A 250 :LDEDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26863 # 1pkhA.109.17 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 109 :LFS 1pkhA 18 :IIK T0287 113 :FDRSI 1pkhA 22 :FNKDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26865 # 1tjvA.109.405 read from T0287.t06.many.frag # found chain 1tjvA in template set T0287 109 :LFSKFDRSI 1tjvA 406 :TINKLSLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26866 # 1t4bA.109.213 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 109 :LFSKFDRSI 1t4bA 214 :PVDNFGVPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26867 # 1srvA.109.116 read from T0287.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)K112 (1srvA)N311 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1srvA)M316 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LFS 1srvA 308 :KLE T0287 113 :FDRS 1srvA 312 :ATLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=26869 # 1qlmA.109.274 read from T0287.t06.many.frag # found chain 1qlmA in template set T0287 109 :LFSKFDRSI 1qlmA 275 :DFYKIDPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26870 # 1eokA.109.24 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)R115 (1eokA)D31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 109 :LFSKFD 1eokA 25 :KLKDIP T0287 117 :I 1eokA 33 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26872 # 1e4cP.109.45 read from T0287.t06.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)D114 (1e4cP)T51 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFSKF 1e4cP 46 :PYEKL T0287 115 :RSI 1e4cP 52 :ESH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26874 # 1h2wA.109.316 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)S111 (1h2wA)T319 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LF 1h2wA 317 :DF T0287 112 :KFDRSI 1h2wA 320 :DPEESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26876 # 1sbxA.109.62 read from T0287.t06.many.frag # found chain 1sbxA in training set T0287 109 :LFSKFDRSI 1sbxA 149 :YCSRCTADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26877 # 1w4sA.109.115 read from T0287.t06.many.frag # found chain 1w4sA in template set T0287 109 :LFSKFDRSI 1w4sA 1045 :CPENFRDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26878 # 1y93A.109.43 read from T0287.t06.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKFD 1y93A 148 :KFSKIN T0287 116 :SI 1y93A 155 :GM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26880 # 1tt8A.109.104 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 109 :LFSKF 1tt8A 105 :ALQKL T0287 115 :RSI 1tt8A 111 :KTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26882 # 1pe9A.109.287 read from T0287.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 109 :LFS 1pe9A 288 :TIA T0287 113 :FDRSI 1pe9A 292 :LSASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26884 # 1uehA.109.167 read from T0287.t06.many.frag # found chain 1uehA in training set T0287 109 :LFSKFDRSI 1uehA 168 :QPDQIDEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26885 # 1rqpA.109.173 read from T0287.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1rqpA)R180 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFSKF 1rqpA 174 :PLSEV T0287 116 :SI 1rqpA 181 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26887 # 1kg0C.109.54 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L109 (1kg0C)Y140 because Y (epsilon') conformation "forbidden" or filtered. T0287 110 :FSKFDRSI 1kg0C 141 :FYGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26888 # 1g9gA.109.98 read from T0287.t06.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)D114 (1g9gA)D104 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1g9gA)N106 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LFSKF 1g9gA 99 :SMSRY T0287 115 :R 1g9gA 105 :A T0287 117 :I 1g9gA 107 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=26891 # 1up8A.109.173 read from T0287.t06.many.frag # found chain 1up8A in template set T0287 109 :LFSKFDRSI 1up8A 173 :EFSEFDSPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26892 # 1hs6A.109.482 read from T0287.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 1hs6A 482 :DLNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26894 # 1pea.109.306 read from T0287.t06.many.frag # found chain 1pea in template set T0287 109 :LFSKFDRSI 1pea 307 :RVEDVQRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26895 # 1ut7A.109.52 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D50 Warning: unaligning (T0287)S111 (1ut7A)Y52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 110 :F 1ut7A 51 :L T0287 112 :K 1ut7A 53 :K T0287 115 :RSI 1ut7A 56 :PWV Number of specific fragments extracted= 3 number of extra gaps= 3 total=26898 # 1qxmA.109.188 read from T0287.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKF 1qxmA 175 :LWQWF T0287 115 :RSI 1qxmA 181 :SSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26900 # 2a3nA.109.260 read from T0287.t06.many.frag # found chain 2a3nA in template set T0287 109 :LFSKFDRSI 2a3nA 249 :ALELLEKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26901 # 1bkrA.109.22 read from T0287.t06.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFS 1bkrA 23 :NIH T0287 113 :FDRSI 1bkrA 27 :FTTSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26903 # 1u8xX.109.459 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 Warning: unaligning (T0287)I117 because last residue in template chain is (1u8xX)P445 T0287 109 :L 1u8xX 437 :F T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26905 # 1ox0A.110.111 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)I117 (1ox0A)R100 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1ox0A 93 :VEA T0287 115 :RS 1ox0A 98 :RD T0287 118 :L 1ox0A 101 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=26908 # 1oygA.110.38 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)I117 (1oygA)T72 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1oygA 65 :VPEFDSS T0287 118 :L 1oygA 73 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=26910 # 1qw9A.110.15 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 110 :F 1qw9A 16 :I T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26912 # 1zvdA.110.245 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 110 :FSKFDRSIL 1zvdA 614 :LKTFDEKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26913 # 1yw4A.110.246 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FS 1yw4A 247 :VP T0287 113 :FDRSIL 1yw4A 250 :LDEDKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26915 # 1t4bA.110.214 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 110 :FSKF 1t4bA 215 :VDNF T0287 115 :RSIL 1t4bA 220 :VPLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26917 # 1srvA.110.117 read from T0287.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1srvA)M316 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKF 1srvA 309 :LENA T0287 115 :RS 1srvA 314 :LS T0287 118 :L 1srvA 317 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=26920 # 1h2wA.110.317 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 110 :FSKFDRSIL 1h2wA 318 :FTDPEESKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26921 # 1pkhA.110.18 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 110 :FS 1pkhA 19 :IK T0287 113 :FDRSIL 1pkhA 22 :FNKDFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26923 # 1tt8A.110.105 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)S116 (1tt8A)T112 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKFDR 1tt8A 106 :LQKLGK T0287 117 :IL 1tt8A 113 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26925 # 1qlmA.110.275 read from T0287.t06.many.frag # found chain 1qlmA in template set T0287 110 :FSKFDRSIL 1qlmA 276 :FYKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26926 # 1tjvA.110.406 read from T0287.t06.many.frag # found chain 1tjvA in template set T0287 110 :FSKFDRSIL 1tjvA 407 :INKLSLEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26927 # 1w4sA.110.116 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1w4sA)D1053 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FS 1w4sA 1046 :PE T0287 113 :FDRS 1w4sA 1049 :FRDE T0287 118 :L 1w4sA 1054 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26930 # 1e4cP.110.46 read from T0287.t06.many.frag # found chain 1e4cP in training set T0287 110 :FSKFDRSIL 1e4cP 47 :YEKLTESHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26931 # 1kg0C.110.55 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 T0287 110 :FSKFDRSI 1kg0C 141 :FYGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26932 # 1eokA.110.25 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 110 :FSKFDRSIL 1eokA 26 :LKDIPDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26933 # 1xruA.110.41 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. T0287 110 :FSKF 1xruA 39 :YSHI T0287 115 :RSIL 1xruA 44 :RIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26935 # 1pea.110.307 read from T0287.t06.many.frag # found chain 1pea in template set T0287 110 :FSKFDRSIL 1pea 308 :VEDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26936 # 1qxmA.110.189 read from T0287.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)K112 (1qxmA)W178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 110 :FS 1qxmA 176 :WQ T0287 113 :F 1qxmA 179 :F T0287 115 :RSIL 1qxmA 181 :SSRQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=26939 # 1l8bA.110.114 read from T0287.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)S111 (1l8bA)D143 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1l8bA)D148 because G (3-10) conformation "forbidden" or filtered. T0287 110 :F 1l8bA 142 :F T0287 112 :KFDR 1l8bA 144 :DYSD T0287 117 :IL 1l8bA 149 :VC Number of specific fragments extracted= 3 number of extra gaps= 2 total=26942 # 1rqpA.110.174 read from T0287.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 110 :FSKF 1rqpA 175 :LSEV T0287 115 :RSIL 1rqpA 180 :RPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26944 # 1ut7A.110.53 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 Warning: unaligning (T0287)I117 (1ut7A)V58 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RS 1ut7A 56 :PW T0287 118 :L 1ut7A 59 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=26947 # 1g4mA.110.306 read from T0287.t06.many.frag # found chain 1g4mA in template set T0287 110 :FSKFDRSIL 1g4mA 307 :REGANREIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26948 # 1vefA.110.361 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)K112 (1vefA)Q364 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FS 1vefA 362 :AL T0287 113 :F 1vefA 365 :A T0287 115 :RSIL 1vefA 367 :PTVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=26951 # 1sbxA.110.63 read from T0287.t06.many.frag # found chain 1sbxA in training set T0287 110 :FSKFDRSIL 1sbxA 150 :CSRCTADQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26952 # 1hs6A.110.483 read from T0287.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)K492 T0287 110 :FSKF 1hs6A 483 :LNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 2 total=26954 # 1uehA.110.168 read from T0287.t06.many.frag # found chain 1uehA in training set T0287 110 :FSKFDRSIL 1uehA 169 :PDQIDEEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=26955 # 1w23A.110.322 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKF 1w23A 323 :GLNG T0287 115 :RSIL 1w23A 328 :RSVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26957 # 1g9gA.110.99 read from T0287.t06.many.frag # found chain 1g9gA in template set T0287 110 :FSKFDRSIL 1g9gA 100 :MSRYDANKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26958 # 1nkr.110.66 read from T0287.t06.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)I117 (1nkr)L73 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1nkr 66 :ISRMTQD T0287 118 :L 1nkr 74 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=26960 # 1ox0A.111.112 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 111 :SK 1ox0A 94 :EA T0287 115 :RSILG 1ox0A 98 :RDRFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26962 # 1qw9A.111.16 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 1 number of extra gaps= 2 total=26963 # 1oygA.111.39 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 T0287 111 :SKFDRSIL 1oygA 66 :PEFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26964 # 1yw4A.111.247 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 111 :SKFDRSILG 1yw4A 248 :PDLDEDKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26965 # 1zvdA.111.246 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 111 :SKFDRSILG 1zvdA 615 :KTFDEKELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26966 # 1h2wA.111.318 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1h2wA 319 :TDPEESKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=26967 # 1t4bA.111.215 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKF 1t4bA 216 :DNF T0287 115 :RSILG 1t4bA 220 :VPLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26969 # 1srvA.111.118 read from T0287.t06.many.frag # found chain 1srvA in template set T0287 111 :SKFDRSILG 1srvA 310 :ENATLSMLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26970 # 1tt8A.111.106 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKF 1tt8A 107 :QKL T0287 115 :RSILG 1tt8A 111 :KTPLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26972 # 1xruA.111.42 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFD 1xruA 40 :SHID T0287 116 :SIL 1xruA 45 :IIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26974 # 1g4mA.111.307 read from T0287.t06.many.frag # found chain 1g4mA in template set T0287 111 :SKFDRSILG 1g4mA 308 :EGANREILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26975 # 1w4sA.111.117 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)D114 (1w4sA)R1050 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SKF 1w4sA 1047 :ENF T0287 115 :RSILG 1w4sA 1051 :DEDVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26977 # 1kg0C.111.56 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)K112 (1kg0C)G143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 111 :S 1kg0C 142 :Y T0287 113 :FDRSI 1kg0C 144 :PTPDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26979 # 1vefA.111.362 read from T0287.t06.many.frag # found chain 1vefA in template set T0287 111 :SKFDRSILG 1vefA 363 :LQAGPTVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26980 # 1l8bA.111.115 read from T0287.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)G119 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1l8bA 143 :DDYSDDVC Number of specific fragments extracted= 1 number of extra gaps= 1 total=26981 # 1qxmA.111.190 read from T0287.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)F113 (1qxmA)F179 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1qxmA)S181 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SK 1qxmA 177 :QW T0287 114 :D 1qxmA 180 :D T0287 116 :SILG 1qxmA 182 :SRQK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26984 # 1ut7A.111.54 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 111 :SK 1ut7A 52 :YK T0287 115 :RSILG 1ut7A 56 :PWVLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26986 # 1tjvA.111.407 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SKF 1tjvA 408 :NKL T0287 115 :RSILG 1tjvA 412 :LEDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26988 # 1w23A.111.323 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKF 1w23A 324 :LNG T0287 115 :RSI 1w23A 328 :RSV T0287 119 :G 1w23A 332 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26991 # 1pkhA.111.19 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1pkhA)G28 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :S 1pkhA 20 :K T0287 113 :F 1pkhA 22 :F T0287 115 :RSIL 1pkhA 24 :KDFV Number of specific fragments extracted= 3 number of extra gaps= 3 total=26994 # 1qlmA.111.276 read from T0287.t06.many.frag # found chain 1qlmA in template set T0287 111 :SKFDRSILG 1qlmA 277 :YKIDPGVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26995 # 1e4cP.111.47 read from T0287.t06.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)G119 (1e4cP)V56 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1e4cP 48 :EKLTESHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26996 # 1nkr.111.67 read from T0287.t06.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)K112 (1nkr)R68 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1nkr)L73 because G (3-10) conformation "forbidden" or filtered. T0287 111 :S 1nkr 67 :S T0287 113 :FDRS 1nkr 69 :MTQD T0287 118 :LG 1nkr 74 :AG Number of specific fragments extracted= 3 number of extra gaps= 2 total=26999 # 2a3nA.111.262 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKF 2a3nA 251 :ELL T0287 115 :RSILG 2a3nA 255 :KDVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27001 # 1g9gA.111.100 read from T0287.t06.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1g9gA 101 :SRYDANKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27002 # 1eokA.111.26 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 111 :SKFDRSILG 1eokA 27 :KDIPDKVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27003 # 1ogoX.111.139 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1ogoX 140 :SQSDDGGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27004 # 1ig0A.111.178 read from T0287.t06.many.frag # found chain 1ig0A in training set T0287 111 :SKFDRSILG 1ig0A 179 :SKVTPISLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27005 # 1pe9A.111.289 read from T0287.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pe9A)S293 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :S 1pe9A 290 :A T0287 113 :F 1pe9A 292 :L T0287 115 :RSILG 1pe9A 294 :ASKAC Number of specific fragments extracted= 3 number of extra gaps= 2 total=27008 # 1pea.111.308 read from T0287.t06.many.frag # found chain 1pea in template set Warning: unaligning (T0287)G119 (1pea)D317 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1pea 309 :EDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27009 # 1ox0A.112.113 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 112 :K 1ox0A 95 :A T0287 115 :RSILGI 1ox0A 98 :RDRFGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27011 # 1qw9A.112.17 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 2 total=27012 # 1yw4A.112.248 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)S116 (1yw4A)D253 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KFDR 1yw4A 249 :DLDE T0287 117 :IL 1yw4A 254 :KL T0287 120 :I 1yw4A 257 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27015 # 1h2wA.112.319 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1h2wA 320 :DPEESKW T0287 120 :I 1h2wA 328 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27017 # 1zvdA.112.247 read from T0287.t06.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)K112 (1zvdA)T616 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FDRSILGI 1zvdA 617 :FDEKELEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27018 # 1xruA.112.43 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. T0287 112 :KFD 1xruA 41 :HID T0287 116 :SILGI 1xruA 45 :IIVGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27020 # 1oygA.112.40 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)I117 (1oygA)T72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)N75 T0287 112 :KFDRS 1oygA 67 :EFDSS T0287 118 :L 1oygA 73 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=27022 # 1t4bA.112.216 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)I120 (1t4bA)S225 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KFDRSILG 1t4bA 217 :NFGVPLAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27023 # 1g4mA.112.308 read from T0287.t06.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 113 :FDRSILGI 1g4mA 310 :ANREILGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27024 # 1vefA.112.363 read from T0287.t06.many.frag # found chain 1vefA in template set T0287 112 :KFDRSILGI 1vefA 364 :QAGPTVIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27025 # 1srvA.112.119 read from T0287.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 1srvA 311 :NA T0287 115 :RSILGI 1srvA 314 :LSMLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27027 # 1tt8A.112.107 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1tt8A)K111 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KF 1tt8A 108 :KL T0287 116 :SILGI 1tt8A 112 :TPLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27029 # 1l8bA.112.116 read from T0287.t06.many.frag # found chain 1l8bA in training set T0287 112 :KFDRSILGI 1l8bA 144 :DYSDDVCGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27030 # 3cla.112.132 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)K112 (3cla)V139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (3cla)P141 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :F 3cla 140 :T T0287 115 :RSILGI 3cla 142 :ENHLNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27032 # 1qxmA.112.191 read from T0287.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1qxmA)K185 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 1qxmA 178 :WF T0287 115 :RSIL 1qxmA 181 :SSRQ T0287 120 :I 1qxmA 186 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=27035 # 1chd.112.123 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KF 1chd 270 :HA T0287 115 :RSILGI 1chd 273 :RNAVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27037 # 1ogoX.112.140 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDR 1ogoX 141 :QSDD T0287 117 :IL 1ogoX 146 :GI T0287 120 :I 1ogoX 149 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=27040 # 1kg0C.112.57 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)D114 (1kg0C)T145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1kg0C)I148 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 112 :KF 1kg0C 143 :GP T0287 115 :RS 1kg0C 146 :PD T0287 120 :I 1kg0C 151 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=27043 # 1w4sA.112.118 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)D114 (1w4sA)R1050 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w4sA)Y1055 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 1w4sA 1048 :NF T0287 115 :RSIL 1w4sA 1051 :DEDV T0287 120 :I 1w4sA 1056 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=27046 # 2fckA.112.128 read from T0287.t06.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)D114 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2fckA)T130 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 112 :KF 2fckA 126 :RL T0287 115 :R 2fckA 129 :L T0287 117 :IL 2fckA 131 :RL Number of specific fragments extracted= 3 number of extra gaps= 3 total=27049 # 1w23A.112.324 read from T0287.t06.many.frag # found chain 1w23A in training set T0287 112 :KFDRSILGI 1w23A 325 :NGHRSVGGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27050 # 2a3nA.112.263 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)G119 (2a3nA)L259 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 2a3nA 252 :LLEKDVP T0287 120 :I 2a3nA 260 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27052 # 1qs1A.112.198 read from T0287.t06.many.frag # found chain 1qs1A in training set T0287 112 :KFDRSILGI 1qs1A 199 :SKERVILKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27053 # 2be1A.112.227 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)R115 (2be1A)F341 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 112 :KFD 2be1A 338 :DLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27054 # 1wl8A.112.69 read from T0287.t06.many.frag # found chain 1wl8A in template set Warning: unaligning (T0287)D114 (1wl8A)N72 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 1wl8A 70 :EF T0287 115 :RSILGI 1wl8A 73 :VPILGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27056 # 1ut7A.112.55 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 112 :K 1ut7A 53 :K T0287 115 :RSILGI 1ut7A 56 :PWVLPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27058 # 1nkr.112.68 read from T0287.t06.many.frag # found chain 1nkr in training set T0287 112 :KFDRSILGI 1nkr 68 :RMTQDLAGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27059 # 1wd3A.112.26 read from T0287.t06.many.frag # found chain 1wd3A in training set Warning: unaligning (T0287)L118 (1wd3A)Y50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1wd3A)Q51 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSI 1wd3A 44 :SFSGAL T0287 120 :I 1wd3A 52 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27061 # 1as4B.112.7 read from T0287.t06.many.frag # found chain 1as4B in template set T0287 112 :KFDRSILGI 1as4B 365 :RFNRPFLMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27062 # 2bw3A.112.110 read from T0287.t06.many.frag # found chain 2bw3A in template set T0287 112 :KFDRSILGI 2bw3A 186 :YIKRNFLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27063 # 1ox0A.113.114 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)G119 (1ox0A)G102 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1ox0A 98 :RDRF T0287 120 :IF 1ox0A 103 :VI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27065 # 1qw9A.113.18 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27066 # 1yw4A.113.249 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)I117 (1yw4A)K254 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FDRS 1yw4A 250 :LDED T0287 118 :LGIF 1yw4A 255 :LPLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27068 # 1h2wA.113.320 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1h2wA 321 :PEESKW T0287 120 :IF 1h2wA 328 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27070 # 3cla.113.133 read from T0287.t06.many.frag # found chain 3cla in training set T0287 113 :FDRSILGIF 3cla 140 :TPENHLNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27071 # 1seiA.113.53 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)F113 (1seiA)N54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1seiA 56 :QGIL T0287 120 :IF 1seiA 61 :IF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27073 # 1ogoX.113.141 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 113 :FDRSILGIF 1ogoX 142 :SDDGGIVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27074 # 1chd.113.124 read from T0287.t06.many.frag # found chain 1chd in training set T0287 113 :FDRSILGIF 1chd 271 :AGRNAVGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27075 # 1g4mA.113.309 read from T0287.t06.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)I117 (1g4mA)I314 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FDRS 1g4mA 310 :ANRE T0287 118 :LGIF 1g4mA 315 :LGII Number of specific fragments extracted= 2 number of extra gaps= 1 total=27077 # 1vefA.113.364 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :F 1vefA 365 :A T0287 115 :RSILGIF 1vefA 367 :PTVIRFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27079 # 1xruA.113.44 read from T0287.t06.many.frag # found chain 1xruA in template set T0287 113 :FDRSILGIF 1xruA 42 :IDRIIVGGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27080 # 1qxmA.113.192 read from T0287.t06.many.frag # found chain 1qxmA in training set T0287 113 :FDRSILGIF 1qxmA 179 :FDSSRQKWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27081 # 1l8bA.113.117 read from T0287.t06.many.frag # found chain 1l8bA in training set T0287 113 :FDRSILGIF 1l8bA 145 :YSDDVCGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27082 # 1srvA.113.120 read from T0287.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)G119 (1srvA)G318 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1srvA 312 :ATLSML T0287 120 :IF 1srvA 319 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27084 # 1t4bA.113.217 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F113 (1t4bA)F218 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :RSILGIF 1t4bA 220 :VPLAGSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27085 # 1crzA.113.225 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FD 1crzA 232 :PD T0287 116 :SIL 1crzA 235 :SKL T0287 120 :IF 1crzA 239 :FA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27088 # 2fckA.113.129 read from T0287.t06.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)R115 (2fckA)L129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 113 :FD 2fckA 127 :LE T0287 116 :SIL 2fckA 130 :TRL T0287 121 :F 2fckA 135 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=27091 # 1kg0C.113.58 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :FDRSI 1kg0C 144 :PTPDI T0287 120 :IF 1kg0C 151 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27093 # 1tt8A.113.108 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :F 1tt8A 109 :L T0287 115 :RSILGIF 1tt8A 111 :KTPLGRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27095 # 2a3nA.113.264 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 113 :F 2a3nA 253 :L T0287 115 :RSILGIF 2a3nA 255 :KDVPLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27097 # 1zvdA.113.248 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 113 :FDRSILGIF 1zvdA 617 :FDEKELELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27098 # 1as4B.113.8 read from T0287.t06.many.frag # found chain 1as4B in template set T0287 113 :FDRSILGIF 1as4B 366 :FNRPFLMII Number of specific fragments extracted= 1 number of extra gaps= 0 total=27099 # 1w23A.113.325 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :FDRSI 1w23A 326 :GHRSV T0287 119 :GIF 1w23A 332 :GCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27101 # 2be1A.113.228 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 113 :FDR 2be1A 339 :LDF T0287 121 :F 2be1A 347 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27103 # 1u7iA.113.46 read from T0287.t06.many.frag # found chain 1u7iA in training set Warning: unaligning (T0287)D114 (1u7iA)E46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1u7iA)G47 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :F 1u7iA 45 :P T0287 116 :SILGIF 1u7iA 48 :SVLKAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27105 # 1qs1A.113.199 read from T0287.t06.many.frag # found chain 1qs1A in training set T0287 113 :FDRSILGIF 1qs1A 200 :KERVILKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27106 # 1n7zA.113.80 read from T0287.t06.many.frag # found chain 1n7zA in template set T0287 113 :FDRSILGIF 1n7zA 81 :VLPSMLDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27107 # 1w4sA.113.119 read from T0287.t06.many.frag # found chain 1w4sA in template set T0287 113 :FDRSILGIF 1w4sA 1049 :FRDEDVYVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27108 # 1lm8V.113.26 read from T0287.t06.many.frag # found chain 1lm8V in template set T0287 113 :FDRSILGIF 1lm8V 80 :SPRVVLPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27109 # 1w66A.113.127 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1w66A)V127 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :ILGIF 1w66A 130 :RSGVW Number of specific fragments extracted= 2 number of extra gaps= 2 total=27111 # 1h2wA.114.321 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 114 :DRSILGIFL 1h2wA 322 :EESKWKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27112 # 1ox0A.114.115 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 115 :RSILGIFL 1ox0A 98 :RDRFGVIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27113 # 1qw9A.114.19 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 114 :DRSIL 1qw9A 20 :DKRIY T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27115 # 1seiA.114.54 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1seiA 56 :QGIL T0287 120 :IFL 1seiA 61 :IFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27117 # 1w66A.114.128 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :IL 1w66A 130 :RS T0287 120 :IFL 1w66A 133 :VWL Number of specific fragments extracted= 3 number of extra gaps= 3 total=27120 # 1ogoX.114.142 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 114 :DRSILGIFL 1ogoX 143 :DDGGIVIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27121 # 3cla.114.134 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 3cla 141 :PENHL T0287 120 :IFL 3cla 147 :ISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27123 # 1yw4A.114.250 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 114 :DRSILGIFL 1yw4A 251 :DEDKLPLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27124 # 1chd.114.125 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1chd)R273 because G (3-10) conformation "forbidden" or filtered. T0287 116 :SILGIFL 1chd 274 :NAVGVIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27125 # 1crzA.114.226 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1crzA 233 :D T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27127 # 1g4mA.114.310 read from T0287.t06.many.frag # found chain 1g4mA in template set T0287 114 :DRSILGIFL 1g4mA 311 :NREILGIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27128 # 1l8bA.114.118 read from T0287.t06.many.frag # found chain 1l8bA in training set T0287 114 :DRSILGIFL 1l8bA 146 :SDDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27129 # 1t4bA.114.218 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 114 :DRSILGIFL 1t4bA 219 :GVPLAGSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27130 # 1xruA.114.45 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSIL 1xruA 44 :RIIV T0287 120 :IFL 1xruA 49 :GIM Number of specific fragments extracted= 2 number of extra gaps= 2 total=27132 # 1vefA.114.365 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1vefA 367 :PTVIRFLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27133 # 1wurA.114.80 read from T0287.t06.many.frag # found chain 1wurA in template set T0287 114 :DRSILGIFL 1wurA 81 :EEVVGGAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27134 # 1qxmA.114.193 read from T0287.t06.many.frag # found chain 1qxmA in training set T0287 114 :DRSILGIFL 1qxmA 180 :DSSRQKWII Number of specific fragments extracted= 1 number of extra gaps= 0 total=27135 # 2be1A.114.129 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)R115 (2be1A)G241 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 T0287 114 :D 2be1A 240 :N T0287 116 :SILGIF 2be1A 242 :EIISAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27137 # 1kg0C.114.59 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)I117 (1kg0C)I148 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 114 :DRS 1kg0C 145 :TPD T0287 120 :IFL 1kg0C 151 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27139 # 2asbA.114.22 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)R115 (2asbA)R128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2asbA)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2asbA)V132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :D 2asbA 127 :A T0287 117 :IL 2asbA 130 :LV T0287 120 :IF 2asbA 133 :VR Number of specific fragments extracted= 3 number of extra gaps= 3 total=27142 # 1u7iA.114.47 read from T0287.t06.many.frag # found chain 1u7iA in training set T0287 114 :DRSILGIFL 1u7iA 46 :EGSVLKALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27143 # 1as4B.114.9 read from T0287.t06.many.frag # found chain 1as4B in template set T0287 114 :DRSILGIFL 1as4B 367 :NRPFLMIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27144 # 1oewA.114.243 read from T0287.t06.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSI 1oewA 244 :SSSV T0287 119 :GIF 1oewA 249 :GYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27146 # 1w23A.114.326 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)I117 (1w23A)V330 because G (3-10) conformation "forbidden" or filtered. T0287 114 :DRS 1w23A 327 :HRS T0287 118 :LGIFL 1w23A 331 :GGCRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27148 # 2a3nA.114.265 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSILGIFL 2a3nA 255 :KDVPLILV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27149 # 2be1A.114.229 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 114 :DRS 2be1A 340 :DFR T0287 121 :FL 2be1A 347 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27151 # 1lm8V.114.27 read from T0287.t06.many.frag # found chain 1lm8V in template set T0287 114 :DRSILGIFL 1lm8V 81 :PRVVLPVWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27152 # 2f6kA.114.114 read from T0287.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2f6kA)G120 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DR 2f6kA 115 :QD T0287 117 :IL 2f6kA 118 :AL T0287 120 :IFL 2f6kA 121 :VTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27155 # 1my7A.114.29 read from T0287.t06.many.frag # found chain 1my7A in training set Warning: unaligning (T0287)G119 (1my7A)E225 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSIL 1my7A 220 :QKEDI T0287 120 :IFL 1my7A 226 :VYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27157 # 1n7zA.114.81 read from T0287.t06.many.frag # found chain 1n7zA in template set Warning: unaligning (T0287)D114 (1n7zA)L82 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1n7zA 83 :PSMLDAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27158 # 1h2wA.115.322 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1h2wA 323 :ESKW T0287 120 :IFLP 1h2wA 328 :VLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27160 # 1w66A.115.129 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :ILGIFLP 1w66A 130 :RSGVWLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27162 # 1qw9A.115.20 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 T0287 115 :RSIL 1qw9A 21 :KRIY T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=27164 # 1seiA.115.55 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1seiA 56 :QGILRIFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27165 # 1ogoX.115.143 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 115 :RSILGIFLP 1ogoX 144 :DGGIVIRVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27166 # 3cla.115.135 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSIL 3cla 142 :ENHL T0287 120 :IFL 3cla 147 :ISA Number of specific fragments extracted= 2 number of extra gaps= 2 total=27168 # 1t4bA.115.219 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 115 :RSILGIFLP 1t4bA 220 :VPLAGSLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27169 # 1crzA.115.227 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 T0287 115 :RSILGIFL 1crzA 234 :GSKLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27170 # 1ox0A.115.116 read from T0287.t06.many.frag # found chain 1ox0A in training set T0287 115 :RSILGIFLP 1ox0A 98 :RDRFGVIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27171 # 1oewA.115.244 read from T0287.t06.many.frag # found chain 1oewA in training set T0287 115 :RSILGIFLP 1oewA 245 :SSVGGYVFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27172 # 1wurA.115.81 read from T0287.t06.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 115 :RSI 1wurA 82 :EVV T0287 119 :GIFLP 1wurA 86 :GAVFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27174 # 1chd.115.126 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1chd 273 :RNAV T0287 120 :IFLP 1chd 278 :VILT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27176 # 1t1uA.115.165 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)R115 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)R167 Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t1uA 170 :S T0287 120 :IFLP 1t1uA 172 :YRLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=27178 # 2be1A.115.130 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 T0287 115 :RSILGIF 2be1A 241 :GEIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27179 # 1g4mA.115.311 read from T0287.t06.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)P123 (1g4mA)S320 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1g4mA 312 :REILGIIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27180 # 1yw4A.115.251 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 115 :RSILGIFLP 1yw4A 252 :EDKLPLFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27181 # 2asbA.115.23 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSILGIF 2asbA 128 :RGLVVVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27182 # 1as4B.115.10 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)S116 (1as4B)P369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :R 1as4B 368 :R T0287 117 :IL 1as4B 370 :FL T0287 120 :IFLP 1as4B 373 :IIVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27185 # 1jo0A.115.78 read from T0287.t06.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)R115 (1jo0A)G80 because S (epsilon) conformation "forbidden" or filtered. T0287 116 :SILGIFLP 1jo0A 81 :HILVLYRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27186 # 1wdaA.115.582 read from T0287.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)R115 (1wdaA)F576 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SILGI 1wdaA 577 :SKAEA T0287 123 :P 1wdaA 584 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=27188 # 1l8bA.115.119 read from T0287.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)P123 (1l8bA)N155 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1l8bA 147 :DDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27189 # 1l1dA.115.43 read from T0287.t06.many.frag # found chain 1l1dA in template set Warning: unaligning (T0287)R115 (1l1dA)L414 because P (beta_P) conformation "forbidden" or filtered. T0287 116 :SILGIFLP 1l1dA 415 :FKPGIYVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27190 # 1kaeA.115.123 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1kaeA 124 :VASV T0287 120 :IFLP 1kaeA 129 :LYIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27192 # 1xruA.115.46 read from T0287.t06.many.frag # found chain 1xruA in template set T0287 115 :RSILGIFLP 1xruA 44 :RIIVGGIMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27193 # 1t61A.115.157 read from T0287.t06.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)G119 (1t61A)G162 because H (helix) conformation "forbidden" or filtered. T0287 115 :RSIL 1t61A 158 :LASP T0287 120 :IFLP 1t61A 163 :SCLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27195 # 2bzvA.115.66 read from T0287.t06.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)G119 (2bzvA)S285 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 2bzvA 281 :DNAL T0287 120 :IFLP 2bzvA 286 :LKLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27197 # 1lm8V.115.28 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSIL 1lm8V 82 :RVVL T0287 120 :IFLP 1lm8V 87 :VWLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27199 # 2be1A.115.230 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 115 :R 2be1A 341 :F T0287 121 :FLP 2be1A 347 :VSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27201 # 1vefA.115.366 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1vefA 367 :PTVI T0287 120 :IFLP 1vefA 372 :FLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27203 # 2f6kA.115.115 read from T0287.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2f6kA)G120 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :R 2f6kA 116 :D T0287 117 :IL 2f6kA 118 :AL T0287 120 :IFLP 2f6kA 121 :VTVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27206 # 1h2wA.116.323 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 116 :SILGIFLPF 1h2wA 324 :SKWKVLVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27207 # 1w66A.116.130 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1w66A 130 :RSGVWLPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27208 # 1seiA.116.56 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SILGIFL 1seiA 57 :GILRIFL T0287 124 :F 1seiA 65 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=27210 # 1qw9A.116.21 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 116 :SILG 1qw9A 22 :RIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=27212 # 1ogoX.116.144 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1ogoX 145 :GGI T0287 120 :IFLPF 1ogoX 149 :IRVPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27214 # 1t4bA.116.220 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 116 :SILGIFLPF 1t4bA 221 :PLAGSLIPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27215 # 1wurA.116.82 read from T0287.t06.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 116 :SI 1wurA 83 :VV T0287 119 :GIFLPF 1wurA 86 :GAVFPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27217 # 3cla.116.136 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 116 :SIL 3cla 143 :NHL T0287 120 :IFL 3cla 147 :ISA T0287 124 :F 3cla 151 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=27220 # 1t1uA.116.166 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t1uA 170 :S T0287 120 :IFLPF 1t1uA 172 :YRLPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27222 # 1crzA.116.228 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27223 # 1as4B.116.11 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)I117 (1as4B)F370 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :S 1as4B 369 :P T0287 118 :L 1as4B 371 :L T0287 120 :IFLPF 1as4B 373 :IIVPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=27226 # 1chd.116.127 read from T0287.t06.many.frag # found chain 1chd in training set T0287 116 :SILGIFLPF 1chd 274 :NAVGVILTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27227 # 1oewA.116.245 read from T0287.t06.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1oewA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SI 1oewA 246 :SV T0287 120 :IFLPF 1oewA 250 :YVFPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27229 # 1kaeA.116.124 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1kaeA 125 :ASV T0287 120 :IFLPF 1kaeA 129 :LYIPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27231 # 2be1A.116.131 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 T0287 116 :SILGIF 2be1A 242 :EIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27232 # 1jo0A.116.79 read from T0287.t06.many.frag # found chain 1jo0A in training set T0287 116 :SILGIFLPF 1jo0A 81 :HILVLYRPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27233 # 3eipA.116.52 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 116 :SILGIFLPF 3eipA 53 :EWVPLLQPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27234 # 1xruA.116.47 read from T0287.t06.many.frag # found chain 1xruA in template set T0287 116 :SILGIFLPF 1xruA 45 :IIVGGIMPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27235 # 1wdaA.116.583 read from T0287.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SILGI 1wdaA 577 :SKAEA T0287 123 :PF 1wdaA 584 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27237 # 1g9gA.116.105 read from T0287.t06.many.frag # found chain 1g9gA in template set T0287 116 :SILGIFLPF 1g9gA 106 :NKPATYAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27238 # 2be1A.116.231 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 116 :S 2be1A 342 :R T0287 121 :FLPF 2be1A 347 :VSPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27240 # 1lm8V.116.29 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 116 :SIL 1lm8V 83 :VVL T0287 120 :IFLPF 1lm8V 87 :VWLNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27242 # 1t61A.116.158 read from T0287.t06.many.frag # found chain 1t61A in training set T0287 116 :SILGIFLPF 1t61A 159 :ASPGSCLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27243 # 1cv8.116.134 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 116 :SILGIFL 1cv8 135 :EVIIIWN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27244 # 2bjqA.116.226 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SILGIF 2bjqA 227 :PVFGRA T0287 123 :PF 2bjqA 234 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27246 # 2bzvA.116.67 read from T0287.t06.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)G119 (2bzvA)S285 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 2bzvA 282 :NAL T0287 120 :IFLPF 2bzvA 286 :LKLPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27248 # 1l1dA.116.44 read from T0287.t06.many.frag # found chain 1l1dA in template set T0287 116 :SILGIFLPF 1l1dA 415 :FKPGIYVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27249 # 1ewfA.116.200 read from T0287.t06.many.frag # found chain 1ewfA in training set Warning: unaligning (T0287)G119 (1ewfA)G204 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 1ewfA 201 :SVA T0287 120 :IFLPF 1ewfA 205 :INYGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27251 # 1repC.116.133 read from T0287.t06.many.frag # found chain 1repC in template set Warning: unaligning (T0287)I117 (1repC)L135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1repC)L142 because T (delta_L) conformation "forbidden" or filtered. T0287 116 :S 1repC 134 :Y T0287 118 :LGIFLP 1repC 136 :IPFFIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27253 # 1t62A.116.68 read from T0287.t06.many.frag # found chain 1t62A in template set T0287 116 :SILGIFLPF 1t62A 1069 :GQYDIILDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27254 # 1h2wA.117.324 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 117 :ILGIFLPFF 1h2wA 325 :KWKVLVPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27255 # 1w66A.117.131 read from T0287.t06.many.frag # found chain 1w66A in template set T0287 117 :ILGIFLPFF 1w66A 130 :RSGVWLPGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27256 # 1seiA.117.57 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1seiA 58 :IL T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27259 # 1ogoX.117.145 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)L122 (1ogoX)V151 because D (zeta) conformation "forbidden" or filtered. T0287 117 :ILGIF 1ogoX 146 :GIVIR T0287 123 :PFF 1ogoX 152 :PAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27261 # 1qw9A.117.22 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 117 :ILG 1qw9A 23 :IYG T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27264 # 1t1uA.117.167 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLPFF 1t1uA 170 :SSYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=27265 # 1as4B.117.12 read from T0287.t06.many.frag # found chain 1as4B in template set T0287 117 :ILGIFLPFF 1as4B 370 :FLMIIVPTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27266 # 3cla.117.137 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 117 :IL 3cla 144 :HL T0287 120 :IFL 3cla 147 :ISA T0287 124 :FF 3cla 151 :PW Number of specific fragments extracted= 3 number of extra gaps= 2 total=27269 # 1crzA.117.229 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 117 :ILGIFL 1crzA 236 :KLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27270 # 1kaeA.117.125 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1kaeA 126 :SVGLYIPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27271 # 3eipA.117.53 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 117 :ILGIFLPFF 3eipA 54 :WVPLLQPYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27272 # 1jo0A.117.80 read from T0287.t06.many.frag # found chain 1jo0A in training set T0287 117 :ILGIFLPFF 1jo0A 82 :ILVLYRPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27273 # 1chd.117.128 read from T0287.t06.many.frag # found chain 1chd in training set T0287 117 :ILGIFLPFF 1chd 275 :AVGVILTGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27274 # 1t4bA.117.221 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 117 :ILGIFLPFF 1t4bA 222 :LAGSLIPWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27275 # 2be1A.117.132 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 T0287 117 :ILGIF 2be1A 243 :IISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27276 # 1cv8.117.135 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 117 :IL 1cv8 136 :VI T0287 120 :IFL 1cv8 139 :IWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=27279 # 1g9gA.117.106 read from T0287.t06.many.frag # found chain 1g9gA in template set T0287 117 :ILGIFLPFF 1g9gA 107 :KPATYAPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27280 # 1oewA.117.246 read from T0287.t06.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)G119 (1oewA)G249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1oewA 247 :VG T0287 120 :IF 1oewA 250 :YV T0287 123 :PFF 1oewA 253 :PCS Number of specific fragments extracted= 3 number of extra gaps= 2 total=27283 # 1f8eA.117.74 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :I 1f8eA 156 :R T0287 119 :GIF 1f8eA 158 :LIS T0287 123 :PFF 1f8eA 162 :PLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=27286 # 1t61A.117.159 read from T0287.t06.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)G119 (1t61A)G162 because H (helix) conformation "forbidden" or filtered. T0287 117 :IL 1t61A 160 :SP T0287 120 :IFLPFF 1t61A 163 :SCLEEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27288 # 1wurA.117.83 read from T0287.t06.many.frag # found chain 1wurA in template set T0287 117 :ILGIFLPFF 1wurA 84 :VGGAVFPAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27289 # 1wdaA.117.584 read from T0287.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 117 :ILGI 1wdaA 578 :KAEA T0287 123 :PFF 1wdaA 584 :PNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27291 # 2bjqA.117.227 read from T0287.t06.many.frag # found chain 2bjqA in training set T0287 117 :ILGIFLPFF 2bjqA 228 :VFGRAYPDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27292 # 2be1A.117.232 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFF 2be1A 347 :VSPTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27293 # 1t62A.117.69 read from T0287.t06.many.frag # found chain 1t62A in template set T0287 117 :ILGIFLPFF 1t62A 1070 :QYDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27294 # 1xruA.117.48 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)F125 (1xruA)T54 because G (3-10) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1xruA 46 :IVGGIMPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27295 # 1lm8V.117.30 read from T0287.t06.many.frag # found chain 1lm8V in template set T0287 117 :ILGIFLPFF 1lm8V 84 :VLPVWLNFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27296 # 2bzvA.117.68 read from T0287.t06.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)I117 (2bzvA)A283 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 2bzvA 284 :LSLKLPFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27297 # 1f8eA.117.323 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)G119 (1f8eA)G408 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1f8eA 406 :YS T0287 120 :IFLPFF 1f8eA 409 :SFMDYW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27299 # 1ttwA.117.35 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)G119 (1ttwA)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 T0287 117 :IL 1ttwA 36 :WV T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=27301 # 1h2wA.118.325 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1h2wA)V330 because D (zeta) conformation "forbidden" or filtered. T0287 118 :L 1h2wA 326 :W T0287 120 :IF 1h2wA 328 :VL T0287 123 :PFFS 1h2wA 331 :PEHE Number of specific fragments extracted= 3 number of extra gaps= 2 total=27304 # 1w66A.118.132 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 118 :L 1w66A 131 :S T0287 120 :IFLPFF 1w66A 133 :VWLPGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=27306 # 1seiA.118.58 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 T0287 118 :LGIFL 1seiA 59 :LRIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27308 # 1ogoX.118.146 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 118 :LGIFLPFFS 1ogoX 147 :IVIRVPADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27309 # 3eipA.118.54 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 118 :LGIFLPFFS 3eipA 55 :VPLLQPYFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27310 # 1as4B.118.13 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1as4B 371 :L T0287 120 :IFLPFFS 1as4B 373 :IIVPTDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27312 # 1crzA.118.230 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LG 1crzA 237 :LA T0287 121 :FL 1crzA 240 :AL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27314 # 1t1uA.118.168 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 T0287 118 :L 1t1uA 170 :S T0287 120 :IFLPFF 1t1uA 172 :YRLPGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=27316 # 1kaeA.118.126 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :LGIFLPF 1kaeA 127 :VGLYIPG T0287 126 :S 1kaeA 135 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=27318 # 1cv8.118.136 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)S126 (1cv8)N145 because G (3-10) conformation "forbidden" or filtered. T0287 118 :LGIFL 1cv8 137 :IIIWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=27320 # 1jo0A.118.81 read from T0287.t06.many.frag # found chain 1jo0A in training set T0287 118 :LGIFLPFFS 1jo0A 83 :LVLYRPSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27321 # 1qw9A.118.23 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 118 :L 1qw9A 24 :Y T0287 122 :L 1qw9A 28 :I T0287 125 :FS 1qw9A 31 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27324 # 1g9gA.118.107 read from T0287.t06.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :L 1g9gA 108 :P T0287 120 :IFLPFFS 1g9gA 110 :TYAPEFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27326 # 3cla.118.138 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 118 :L 3cla 145 :L T0287 120 :IFL 3cla 147 :ISA T0287 124 :FFS 3cla 151 :PWV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27329 # 1chd.118.129 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)S126 (1chd)G284 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1chd 276 :VGVILTGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=27330 # 2be1A.118.133 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 Warning: unaligning (T0287)S126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2be1A)K252 T0287 118 :LGIF 2be1A 244 :ISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27331 # 1t4bA.118.222 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F121 (1t4bA)L226 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGI 1t4bA 223 :AGS T0287 122 :LPFFS 1t4bA 227 :IPWID Number of specific fragments extracted= 2 number of extra gaps= 1 total=27333 # 1f8eA.118.75 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1f8eA 159 :ISWPLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=27334 # 1t61A.118.160 read from T0287.t06.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)I120 (1t61A)S163 because G (3-10) conformation "forbidden" or filtered. T0287 118 :LG 1t61A 161 :PG T0287 121 :FLPFFS 1t61A 164 :CLEEFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27336 # 1t62A.118.70 read from T0287.t06.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)S126 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1t62A 1071 :YDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27337 # 1y8xB.118.78 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIF 1y8xB 423 :LAVA T0287 123 :PFFS 1y8xB 428 :VTTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27339 # 1lm8V.118.31 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 118 :L 1lm8V 85 :L T0287 120 :IFLPFFS 1lm8V 87 :VWLNFDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27341 # 1flmA.118.15 read from T0287.t06.many.frag # found chain 1flmA in training set T0287 118 :LGIFLPFFS 1flmA 16 :VAIATQGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=27342 # 1sz2A.118.114 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 T0287 118 :LGIFLPFF 1sz2A 104 :VSMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=27343 # 1sqwA.118.85 read from T0287.t06.many.frag # found chain 1sqwA in template set T0287 118 :LGIFLPFFS 1sqwA 86 :LDYLAPYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27344 # 1ttwA.118.36 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 T0287 118 :LGIFLP 1ttwA 37 :VVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27345 # 2be1A.118.233 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFFS 2be1A 347 :VSPTFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27346 # 2fhpA.118.35 read from T0287.t06.many.frag # found chain 2fhpA in template set T0287 118 :LGIFLPFFS 2fhpA 33 :FNMIGPYFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27347 # 1repC.118.135 read from T0287.t06.many.frag # found chain 1repC in template set T0287 118 :LGIFLPFFS 1repC 136 :IPFFIGLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27348 # 2asbA.118.26 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIF 2asbA 131 :VVVR T0287 124 :F 2asbA 137 :T T0287 126 :S 2asbA 139 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=27351 # 1h2wA.119.326 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)L122 (1h2wA)V330 because D (zeta) conformation "forbidden" or filtered. T0287 119 :GIF 1h2wA 327 :KVL T0287 123 :PFFSK 1h2wA 331 :PEHEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27353 # 1w66A.119.133 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1w66A 132 :GVWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=27355 # 1ogoX.119.147 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ogoX 149 :IRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27356 # 1crzA.119.231 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)S246 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1crzA 239 :FAL Number of specific fragments extracted= 1 number of extra gaps= 2 total=27357 # 3eipA.119.55 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 119 :GIFLPFFSK 3eipA 56 :PLLQPYFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27358 # 1seiA.119.59 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 3 total=27360 # 1as4B.119.14 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1as4B 373 :IIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27361 # 1t1uA.119.169 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 119 :GIFLPFF 1t1uA 171 :SYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=27362 # 1cv8.119.137 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 2 number of extra gaps= 3 total=27364 # 1y8xB.119.79 read from T0287.t06.many.frag # found chain 1y8xB in template set T0287 119 :GIFLPFFSK 1y8xB 424 :AVADVTTPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27365 # 1kaeA.119.127 read from T0287.t06.many.frag # found chain 1kaeA in training set T0287 119 :GIFLPFFSK 1kaeA 128 :GLYIPGGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27366 # 1flmA.119.16 read from T0287.t06.many.frag # found chain 1flmA in training set T0287 119 :GIFLPFFSK 1flmA 17 :AIATQGEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27367 # 1f8eA.119.76 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1f8eA)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 119 :GIF 1f8eA 158 :LIS T0287 123 :PFFS 1f8eA 162 :PLSS Number of specific fragments extracted= 2 number of extra gaps= 2 total=27369 # 1jo0A.119.82 read from T0287.t06.many.frag # found chain 1jo0A in training set T0287 119 :GIFLPFFSK 1jo0A 84 :VLYRPSEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27370 # 2asbA.119.27 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIF 2asbA 132 :VVR T0287 124 :F 2asbA 137 :T T0287 126 :SK 2asbA 139 :TK Number of specific fragments extracted= 3 number of extra gaps= 2 total=27373 # 1t62A.119.71 read from T0287.t06.many.frag # found chain 1t62A in template set T0287 119 :GIFLPFFSK 1t62A 1072 :DIILDGQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27374 # 1sz2A.119.115 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 119 :GIFLPFF 1sz2A 105 :SMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=27375 # 1ttwA.119.37 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)G119 (1ttwA)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 2 total=27376 # 1lm8V.119.32 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)S126 (1lm8V)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1lm8V 86 :PVWLNFD T0287 127 :K 1lm8V 94 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=27378 # 1mpxA.119.461 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 119 :GIFLPFFSK 1mpxA 484 :TFVTEPLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27379 # 1hynP.119.230 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)G119 (1hynP)V231 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. T0287 120 :IFLP 1hynP 232 :GRAD T0287 125 :FSK 1hynP 237 :LEQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=27381 # 1g9gA.119.108 read from T0287.t06.many.frag # found chain 1g9gA in template set T0287 119 :GIFLPFFSK 1g9gA 109 :ATYAPEFQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27382 # 1chd.119.130 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)K127 (1chd)N285 because G (3-10) conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1chd 277 :GVILTGMG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27383 # 2bzvA.119.70 read from T0287.t06.many.frag # found chain 2bzvA in template set T0287 119 :GIFLPFFSK 2bzvA 285 :SLKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27384 # 1qg3A.119.19 read from T0287.t06.many.frag # found chain 1qg3A in template set T0287 119 :GIFLPFFSK 1qg3A 1145 :FNWLPPSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27385 # 1io0A.119.124 read from T0287.t06.many.frag # found chain 1io0A in training set Warning: unaligning (T0287)F124 (1io0A)N289 because L (left) conformation "forbidden" or filtered. T0287 119 :GIFLP 1io0A 284 :ELRID T0287 125 :FSK 1io0A 290 :QSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27387 # 3cla.119.139 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 119 :GIFL 3cla 146 :NISA T0287 124 :FFSK 3cla 151 :PWVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27389 # 2bjqA.119.33 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)V34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :F 2bjqA 39 :K T0287 127 :K 2bjqA 42 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=27392 # 1oltA.119.55 read from T0287.t06.many.frag # found chain 1oltA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)K64 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)K64 T0287 119 :GIFLPFF 1oltA 56 :YVHIPFC Number of specific fragments extracted= 1 number of extra gaps= 1 total=27393 # 1t61A.119.161 read from T0287.t06.many.frag # found chain 1t61A in training set T0287 119 :GIFLPFFSK 1t61A 162 :GSCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27394 # 1h2wA.120.327 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 120 :IFLPFFSKP 1h2wA 328 :VLVPEHEKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27395 # 1ttwA.120.38 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27396 # 1crzA.120.232 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 1crzA 239 :FAL T0287 127 :KP 1crzA 246 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27398 # 1flmA.120.17 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1flmA 18 :IATQGED T0287 128 :P 1flmA 26 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=27400 # 1mpxA.120.462 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 120 :IFLPFFSKP 1mpxA 485 :FVTEPLTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27401 # 1w66A.120.134 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1w66A 133 :VWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=27403 # 2asbA.120.28 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IF 2asbA 133 :VR T0287 124 :F 2asbA 137 :T T0287 126 :SKP 2asbA 139 :TKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27406 # 3eipA.120.56 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 120 :IFLPFFSKP 3eipA 57 :LLQPYFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27407 # 1ogoX.120.148 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ogoX 149 :IRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27408 # 1t1uA.120.170 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 120 :IFLPFF 1t1uA 172 :YRLPGH T0287 128 :P 1t1uA 180 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=27410 # 1y8xB.120.80 read from T0287.t06.many.frag # found chain 1y8xB in template set T0287 120 :IFLPFFSKP 1y8xB 425 :VADVTTPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27411 # 1as4B.120.15 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1as4B 373 :IIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27412 # 1sz2A.120.116 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)F124 (1sz2A)M110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 120 :IFLP 1sz2A 106 :MAIP T0287 125 :F 1sz2A 111 :L T0287 128 :P 1sz2A 114 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=27415 # 1seiA.120.60 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG T0287 128 :P 1seiA 69 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=27418 # 2bjqA.120.34 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :F 2bjqA 39 :K T0287 126 :S 2bjqA 41 :G T0287 128 :P 2bjqA 43 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=27422 # 1hynP.120.231 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1hynP 232 :GRADFLE T0287 128 :P 1hynP 240 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=27424 # 1f8eA.120.77 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1f8eA)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IF 1f8eA 159 :IS T0287 123 :PFFS 1f8eA 162 :PLSS T0287 128 :P 1f8eA 167 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=27427 # 1kaeA.120.128 read from T0287.t06.many.frag # found chain 1kaeA in training set T0287 120 :IFLPFFSKP 1kaeA 129 :LYIPGGSAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27428 # 1cv8.120.138 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FSK 1cv8 144 :DNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27430 # 1te0A.120.296 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 T0287 120 :IF 1te0A 333 :VV T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27432 # 1t62A.120.72 read from T0287.t06.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)S126 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1t62A 1073 :IILDGQ T0287 127 :KP 1t62A 1080 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27434 # 1r5mA.120.142 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1r5mA 255 :NVL T0287 124 :FFSKP 1r5mA 259 :FHRAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27436 # 1ut7A.120.63 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F124 (1ut7A)F65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1ut7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLP 1ut7A 61 :NKAL T0287 126 :SK 1ut7A 67 :EK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27438 # 1wnaA.120.47 read from T0287.t06.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1wnaA 48 :LLLHTGKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27439 # 1jo0A.120.83 read from T0287.t06.many.frag # found chain 1jo0A in training set T0287 120 :IFLPFFSKP 1jo0A 85 :LYRPSEEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27440 # 1t61A.120.162 read from T0287.t06.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)P128 (1t61A)A171 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1t61A 163 :SCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=27441 # 1l1dA.120.48 read from T0287.t06.many.frag # found chain 1l1dA in template set Warning: unaligning (T0287)K127 (1l1dA)G426 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1l1dA 419 :IYVDVVS T0287 128 :P 1l1dA 427 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=27443 # 1lm8V.120.33 read from T0287.t06.many.frag # found chain 1lm8V in template set T0287 120 :IFLPFFSKP 1lm8V 87 :VWLNFDGEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27444 # 2bzvA.120.71 read from T0287.t06.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)P128 (2bzvA)G294 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 2bzvA 286 :LKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27445 # 3bamA.120.94 read from T0287.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (3bamA)N102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 3bamA 95 :VYK T0287 124 :FFS 3bamA 99 :FIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=27447 # 1ttwA.121.39 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 121 :FLP 1ttwA 40 :LAP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27449 # 1flmA.121.18 read from T0287.t06.many.frag # found chain 1flmA in training set T0287 121 :FLPFFSKPI 1flmA 19 :ATQGEDGPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27450 # 1h2wA.121.328 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)L122 (1h2wA)V330 because D (zeta) conformation "forbidden" or filtered. T0287 121 :F 1h2wA 329 :L T0287 123 :PFFSKPI 1h2wA 331 :PEHEKDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27452 # 2bjqA.121.35 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2bjqA 36 :LW T0287 124 :FFSKPI 2bjqA 39 :KFGKPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27454 # 1hynP.121.232 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1hynP 233 :RADFLE T0287 128 :PI 1hynP 240 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27456 # 1mpxA.121.463 read from T0287.t06.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)S126 (1mpxA)T491 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FLPFF 1mpxA 486 :VTEPL T0287 127 :KPI 1mpxA 492 :EPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27458 # 1y8xB.121.81 read from T0287.t06.many.frag # found chain 1y8xB in template set T0287 121 :FLPFFSKPI 1y8xB 426 :ADVTTPQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27459 # 2asbA.121.29 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2asbA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :F 2asbA 134 :R T0287 124 :F 2asbA 137 :T T0287 126 :SKP 2asbA 139 :TKA Number of specific fragments extracted= 3 number of extra gaps= 3 total=27462 # 1crzA.121.233 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 121 :FL 1crzA 240 :AL T0287 126 :SKPI 1crzA 245 :GSLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27464 # 1dkiA.121.193 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 121 :FLPFFSKPI 1dkiA 76 :NNPYFNHPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27465 # 1te0A.121.297 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 T0287 121 :F 1te0A 334 :V T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27467 # 1ut7A.121.64 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1ut7A 62 :KALFGEK T0287 129 :I 1ut7A 70 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=27469 # 1t1uA.121.171 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 121 :FLPFF 1t1uA 173 :RLPGH T0287 128 :PI 1t1uA 180 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27471 # 1sz2A.121.117 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 121 :FLPFF 1sz2A 107 :AIPML T0287 128 :PI 1sz2A 114 :EH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27473 # 3eipA.121.57 read from T0287.t06.many.frag # found chain 3eipA in training set Warning: unaligning (T0287)K127 (3eipA)H64 because P (beta_P) conformation "forbidden" or filtered. T0287 121 :FLPFFS 3eipA 58 :LQPYFN T0287 128 :PI 3eipA 65 :QI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27475 # 1f8eA.121.78 read from T0287.t06.many.frag # found chain 1f8eA in training set T0287 121 :FLPFFSKPI 1f8eA 160 :SWPLSSPPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27476 # 1oh0A.121.88 read from T0287.t06.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 121 :FL 1oh0A 89 :EM T0287 124 :FF 1oh0A 92 :WN T0287 127 :KPI 1oh0A 95 :QPC Number of specific fragments extracted= 3 number of extra gaps= 2 total=27479 # 1ogoX.121.149 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)K127 (1ogoX)N156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 121 :FLPFFS 1ogoX 150 :RVPADA T0287 129 :I 1ogoX 158 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=27481 # 1w0pA.121.419 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FLP 1w0pA 420 :NLN T0287 125 :FSKPI 1w0pA 424 :VSAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27483 # 1r5mA.121.143 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1r5mA 256 :VL T0287 124 :FFSKPI 1r5mA 259 :FHRAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27485 # 1w66A.121.135 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFF 1w66A 134 :WLPGR T0287 127 :K 1w66A 140 :A T0287 129 :I 1w66A 142 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=27488 # 1crzA.121.277 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 284 :TS T0287 124 :FFSKPI 1crzA 287 :QAGRPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27490 # 1nwzA.121.94 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FL 1nwzA 95 :TF T0287 124 :FF 1nwzA 98 :YQ T0287 127 :KPI 1nwzA 101 :TPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=27493 # 1as4B.121.16 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)K127 (1as4B)Q380 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1as4B 374 :IVPTDT T0287 129 :I 1as4B 382 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27495 # 1quqB.121.16 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 1quqB 17 :LA T0287 124 :FF 1quqB 20 :FI T0287 127 :KPI 1quqB 23 :KPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27498 # 1cv8.121.139 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1cv8 140 :WN T0287 125 :FSK 1cv8 144 :DNG T0287 129 :I 1cv8 148 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=27501 # 1wnaA.121.48 read from T0287.t06.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)F125 (1wnaA)G53 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPF 1wnaA 49 :LLHT T0287 126 :SK 1wnaA 54 :KK T0287 129 :I 1wnaA 57 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27504 # 2fbeA.121.56 read from T0287.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2fbeA)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2fbeA 57 :TP T0287 124 :FF 2fbeA 60 :FT T0287 129 :I 2fbeA 65 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=27507 # 2axwA.121.82 read from T0287.t06.many.frag # found chain 2axwA in template set Warning: unaligning (T0287)P128 (2axwA)Q90 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 2axwA 83 :SRPGQEE T0287 129 :I 2axwA 91 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27509 # 3bamA.121.95 read from T0287.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 3bamA 96 :YK T0287 124 :FFSK 3bamA 99 :FIEN T0287 129 :I 3bamA 104 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=27512 # 2bjqA.122.36 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 2bjqA 37 :W T0287 124 :FF 2bjqA 39 :KF T0287 127 :KPIM 2bjqA 42 :KPIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=27515 # 1flmA.122.19 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :LPFFS 1flmA 20 :TQGED T0287 128 :PIM 1flmA 26 :PHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27517 # 1hynP.122.233 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 122 :LPFFSKPIM 1hynP 234 :ADFLEQPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27518 # 1ttwA.122.40 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 T0287 122 :LP 1ttwA 41 :AP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=27520 # 1y8xB.122.82 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1y8xB 428 :VTTPQTVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27521 # 1mpxA.122.464 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 122 :LPFFSKPIM 1mpxA 487 :TEPLTEPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27522 # 1dkiA.122.194 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 122 :LPFFSKPIM 1dkiA 77 :NPYFNHPKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27523 # 1h2wA.122.329 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 122 :LPFFSKPIM 1h2wA 330 :VPEHEKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27524 # 1te0A.122.298 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 1 number of extra gaps= 2 total=27525 # 2asbA.122.30 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 124 :FFSKPIM 2asbA 137 :TETKASE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27526 # 1quqB.122.17 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 1quqB 18 :A T0287 124 :FF 1quqB 20 :FI T0287 127 :KPIM 1quqB 23 :KPVC Number of specific fragments extracted= 3 number of extra gaps= 2 total=27529 # 1crzA.122.234 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 1crzA 241 :L T0287 127 :KPIM 1crzA 246 :SLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27531 # 1crzA.122.278 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 122 :L 1crzA 285 :S T0287 124 :FF 1crzA 287 :QA T0287 128 :PIM 1crzA 291 :PQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27534 # 1w0pA.122.420 read from T0287.t06.many.frag # found chain 1w0pA in training set T0287 122 :LPFFSKPIM 1w0pA 421 :LNGVSAPII Number of specific fragments extracted= 1 number of extra gaps= 0 total=27535 # 1nwzA.122.95 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. T0287 122 :L 1nwzA 96 :F T0287 124 :F 1nwzA 98 :Y T0287 126 :SKPIM 1nwzA 100 :MTPTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=27538 # 1ut7A.122.65 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFFSK 1ut7A 63 :ALFGEK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27540 # 1oh0A.122.89 read from T0287.t06.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :FF 1oh0A 92 :WN T0287 127 :KPIM 1oh0A 95 :QPCA Number of specific fragments extracted= 2 number of extra gaps= 2 total=27542 # 1amx.122.59 read from T0287.t06.many.frag # found chain 1amx in template set Warning: unaligning (T0287)L122 (1amx)K198 because L (left) conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1amx 199 :SYVSKDIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27543 # 2bsfA.122.86 read from T0287.t06.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)S126 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFF 2bsfA 237 :LTVT T0287 127 :K 2bsfA 242 :N T0287 129 :IM 2bsfA 244 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27546 # 2fbeA.122.57 read from T0287.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2fbeA)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2fbeA 58 :P T0287 124 :FF 2fbeA 60 :FT T0287 129 :IM 2fbeA 65 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=27549 # 1sz2A.122.118 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 122 :LPFF 1sz2A 108 :IPML T0287 128 :PIM 1sz2A 114 :EHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27551 # 1j0pA.122.11 read from T0287.t06.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 122 :L 1j0pA 11 :M T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIM 1j0pA 17 :PVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27554 # 1b12A.122.36 read from T0287.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 122 :L 1b12A 112 :D T0287 128 :PIM 1b12A 118 :TLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27556 # 1r5mA.122.144 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 1r5mA 257 :L T0287 124 :FFSKPIM 1r5mA 259 :FHRAPIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27558 # 2a25A.122.137 read from T0287.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2a25A)R232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2a25A 227 :L T0287 124 :FF 2a25A 229 :GH T0287 129 :IM 2a25A 234 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=27561 # 4bcl.122.244 read from T0287.t06.many.frag # found chain 4bcl in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (4bcl)Q247 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)Q247 T0287 122 :L 4bcl 245 :V T0287 125 :FSKPIM 4bcl 248 :LNKPAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27563 # 1cczA.122.78 read from T0287.t06.many.frag # found chain 1cczA in training set T0287 122 :LPFFSKPIM 1cczA 79 :SPNITDTMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27564 # 1b7yA.122.257 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)F124 (1b7yA)F260 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 122 :LP 1b7yA 258 :FP T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIM 1b7yA 264 :GAQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=27567 # 1zsqA.122.46 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 122 :L 1zsqA 116 :S T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIM 1zsqA 122 :PFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27570 # 1t1uA.122.172 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 122 :LPFF 1t1uA 174 :LPGH T0287 128 :PIM 1t1uA 180 :DTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27572 # 2bjqA.123.37 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFS 2bjqA 39 :KFG T0287 128 :PIMF 2bjqA 43 :PIHG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27574 # 1flmA.123.20 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFS 1flmA 21 :QGED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27576 # 1hynP.123.234 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. T0287 123 :P 1hynP 235 :D T0287 125 :FSKPIMF 1hynP 237 :LEQPVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27578 # 1y8xB.123.83 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. T0287 123 :PFFS 1y8xB 428 :VTTP T0287 128 :PIMF 1y8xB 433 :TVLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27580 # 1ttwA.123.41 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 123 :P 1ttwA 42 :P T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=27582 # 1te0A.123.299 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K T0287 131 :F 1te0A 344 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=27585 # 1dkiA.123.195 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 123 :PFFSKPIMF 1dkiA 78 :PYFNHPKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27586 # 1quqB.123.18 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1quqB 20 :FIDKPVCF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27587 # 1h2wA.123.330 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 123 :PFFSKPIMF 1h2wA 331 :PEHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27588 # 1crzA.123.279 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1crzA 287 :QAGRPQVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27589 # 1crzA.123.235 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMF 1crzA 245 :GSLNLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27590 # 1mpxA.123.465 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 123 :PFFSKPIMF 1mpxA 488 :EPLTEPLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27591 # 2asbA.123.31 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 2asbA 137 :TETKASEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27592 # 1nwzA.123.96 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1nwzA)T101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 128 :PIM 1nwzA 102 :PTK Number of specific fragments extracted= 2 number of extra gaps= 3 total=27594 # 1w0pA.123.421 read from T0287.t06.many.frag # found chain 1w0pA in training set T0287 123 :PFFSKPIMF 1w0pA 422 :NGVSAPIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27595 # 1dg6A.123.123 read from T0287.t06.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)P123 (1dg6A)T214 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1dg6A 215 :SYPAPILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27596 # 1zsqA.123.47 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMF 1zsqA 122 :PFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27598 # 2a25A.123.138 read from T0287.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IMF 2a25A 234 :LTW Number of specific fragments extracted= 3 number of extra gaps= 3 total=27601 # 2bsfA.123.87 read from T0287.t06.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 123 :PFFSK 2bsfA 238 :TVTSN T0287 129 :IMF 2bsfA 244 :VLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27603 # 1b7yA.123.258 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 123 :PFFS 1b7yA 259 :PFVE T0287 128 :PIMF 1b7yA 264 :GAQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27605 # 1ut7A.123.66 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F125 (1ut7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)F73 T0287 123 :PF 1ut7A 64 :LF T0287 126 :SK 1ut7A 67 :EK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 3 number of extra gaps= 3 total=27608 # 1vchA.123.86 read from T0287.t06.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)K127 (1vchA)D91 because L (left) conformation "forbidden" or filtered. T0287 123 :PFFS 1vchA 87 :PYME T0287 128 :PIMF 1vchA 92 :PIIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27610 # 1amx.123.60 read from T0287.t06.many.frag # found chain 1amx in template set T0287 123 :PFFSKPIMF 1amx 199 :SYVSKDITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27611 # 1oh0A.123.90 read from T0287.t06.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :F 1oh0A 92 :W T0287 127 :KPIMF 1oh0A 95 :QPCAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27613 # 2fbeA.123.58 read from T0287.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :IMF 2fbeA 65 :HYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=27615 # 1xubA.123.259 read from T0287.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xubA)R244 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xubA)R244 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1xubA)S246 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1xubA)S246 T0287 123 :PFF 1xubA 240 :VEI T0287 130 :MF 1xubA 247 :LM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27617 # 1j0pA.123.12 read from T0287.t06.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIMF 1j0pA 17 :PVVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27619 # 1b12A.123.37 read from T0287.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 128 :PIMF 1b12A 118 :TLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27620 # 1cczA.123.79 read from T0287.t06.many.frag # found chain 1cczA in training set T0287 123 :PFFSKPIMF 1cczA 80 :PNITDTMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27621 # 2fojA.123.12 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P123 because first residue in template chain is (2fojA)T63 Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMF 2fojA 69 :ATF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27623 # 2bjqA.124.38 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 2bjqA 39 :KF T0287 127 :KPIMFK 2bjqA 42 :KPIHGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27625 # 1y8xB.124.84 read from T0287.t06.many.frag # found chain 1y8xB in template set T0287 124 :FFSKPIMFK 1y8xB 429 :TTPQTVLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27626 # 1hynP.124.235 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1hynP 237 :LE T0287 128 :PIMFK 1hynP 240 :PVLGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27628 # 1ttwA.124.42 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 129 :I 1ttwA 48 :L T0287 132 :K 1ttwA 51 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=27630 # 1flmA.124.21 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 T0287 124 :FFSKPIMF 1flmA 22 :GEDGPHLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27631 # 1te0A.124.300 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K T0287 131 :FK 1te0A 344 :LQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=27634 # 1quqB.124.19 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FF 1quqB 20 :FI T0287 127 :KP 1quqB 23 :KP T0287 130 :MFK 1quqB 26 :CFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27637 # 1dkiA.124.196 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 124 :FFSKPIMFK 1dkiA 79 :YFNHPKNLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27638 # 1crzA.124.280 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 124 :FFSKPIMFK 1crzA 287 :QAGRPQVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27639 # 1crzA.124.236 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMFK 1crzA 245 :GSLNLYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27640 # 1h2wA.124.331 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K132 (1h2wA)W340 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1h2wA 332 :EHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27641 # 1dg6A.124.124 read from T0287.t06.many.frag # found chain 1dg6A in training set T0287 124 :FFSKPIMFK 1dg6A 215 :SYPAPILLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27642 # 1w0pA.124.422 read from T0287.t06.many.frag # found chain 1w0pA in training set T0287 124 :FFSKPIMFK 1w0pA 423 :GVSAPIILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27643 # 2asbA.124.32 read from T0287.t06.many.frag # found chain 2asbA in template set T0287 124 :FFSKPIMFK 2asbA 137 :TETKASEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27644 # 1zsqA.124.48 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMFK 1zsqA 122 :PFVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27646 # 1nwzA.124.97 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27648 # 2bsfA.124.88 read from T0287.t06.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2bsfA)T247 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2bsfA 239 :VTSN T0287 129 :IMF 2bsfA 244 :VLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27650 # 1gvp.124.37 read from T0287.t06.many.frag # found chain 1gvp in training set T0287 124 :FFSKPIMFK 1gvp 38 :GNEYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27651 # 1b7yA.124.259 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 124 :FFS 1b7yA 260 :FVE T0287 128 :PIMFK 1b7yA 264 :GAQFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27653 # 2a25A.124.139 read from T0287.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IMFK 2a25A 234 :LTWE Number of specific fragments extracted= 3 number of extra gaps= 2 total=27656 # 1amx.124.61 read from T0287.t06.many.frag # found chain 1amx in template set T0287 124 :FFSKPIMFK 1amx 200 :YVSKDITIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27657 # 1vchA.124.87 read from T0287.t06.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)K127 (1vchA)D91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1vchA)E96 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFS 1vchA 88 :YME T0287 128 :PIMF 1vchA 92 :PIIQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=27659 # 1gnyA.124.100 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFS 1gnyA 191 :TAD T0287 128 :PIMFK 1gnyA 195 :DLTLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27661 # 2fojA.124.13 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMFK 2fojA 69 :ATFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27663 # 1mpxA.124.466 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 124 :FFSKPIMFK 1mpxA 489 :PLTEPLQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27664 # 1uh4A.124.584 read from T0287.t06.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)M130 (1uh4A)T591 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFSKPI 1uh4A 585 :NDSVSH T0287 131 :FK 1uh4A 592 :VN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27666 # 2fbeA.124.59 read from T0287.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :IMFK 2fbeA 65 :HYWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27668 # 1wnaA.124.51 read from T0287.t06.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1wnaA)P60 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFSK 1wnaA 52 :TGKK T0287 129 :IMF 1wnaA 57 :LLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27670 # 1y1oA.124.70 read from T0287.t06.many.frag # found chain 1y1oA in template set T0287 124 :FFSKPIMFK 1y1oA 68 :KRSAAVITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27671 # 1l6pA.124.75 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K127 (1l6pA)D79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFS 1l6pA 76 :IYR T0287 129 :IMFK 1l6pA 81 :LTLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27673 # 1quqB.125.20 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :F 1quqB 21 :I T0287 127 :KPIMFK 1quqB 23 :KPVCFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27675 # 1dkiA.125.197 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 125 :FSKPIMFKM 1dkiA 80 :FNHPKNLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27676 # 1y8xB.125.85 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)M133 (1y8xB)L438 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1y8xB 430 :TPQTVLFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27677 # 2bjqA.125.39 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (2bjqA)H45 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :SKPI 2bjqA 41 :GKPI T0287 131 :FKM 2bjqA 46 :GRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=27679 # 1te0A.125.301 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 125 :F 1te0A 338 :D T0287 127 :K 1te0A 340 :K T0287 131 :FKM 1te0A 344 :LQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27682 # 1hynP.125.236 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1hynP 237 :LE T0287 128 :PIMFKM 1hynP 240 :PVLGFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27684 # 1flmA.125.22 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 125 :FS 1flmA 23 :ED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27686 # 1ttwA.125.43 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 129 :I 1ttwA 48 :L T0287 132 :KM 1ttwA 51 :FM Number of specific fragments extracted= 2 number of extra gaps= 2 total=27688 # 1crzA.125.281 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0287 125 :F 1crzA 288 :A T0287 127 :KPIMFKM 1crzA 290 :RPQVYKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27690 # 1crzA.125.237 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1crzA)L249 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPI 1crzA 246 :SLN T0287 131 :FKM 1crzA 250 :YVM Number of specific fragments extracted= 2 number of extra gaps= 2 total=27692 # 1dg6A.125.125 read from T0287.t06.many.frag # found chain 1dg6A in training set T0287 125 :FSKPIMFKM 1dg6A 216 :YPAPILLMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27693 # 1gnyA.125.101 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1gnyA 192 :AD T0287 128 :PIMFKM 1gnyA 195 :DLTLTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27695 # 1w0pA.125.423 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)K132 (1w0pA)Q431 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1w0pA)S432 because G (3-10) conformation "forbidden" or filtered. T0287 125 :FSKPIMF 1w0pA 424 :VSAPIIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27696 # 1zsqA.125.49 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 125 :F 1zsqA 119 :R T0287 128 :PIMFKM 1zsqA 122 :PFVLDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27698 # 1gvp.125.38 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K127 (1gvp)Y41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 T0287 125 :FS 1gvp 39 :NE T0287 128 :PIMFK 1gvp 42 :PVLVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27700 # 2asbA.125.33 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 126 :SKPIMFKM 2asbA 139 :TKASEGVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27701 # 1nwzA.125.98 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 125 :F 1nwzA 99 :Q T0287 127 :KPIM 1nwzA 101 :TPTK T0287 133 :M 1nwzA 107 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=27704 # 1h2wA.125.332 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K132 (1h2wA)W340 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKPIMF 1h2wA 333 :HEKDVLE T0287 133 :M 1h2wA 341 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27706 # 1ikoP.125.77 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKPI 1ikoP 107 :PDQDV T0287 131 :FKM 1ikoP 113 :FTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27708 # 1b7yA.125.260 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMFKM 1b7yA 264 :GAQFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27710 # 1ddlA.125.123 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ddlA)S124 T0287 126 :SKPIMFKM 1ddlA 125 :VKPIDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27711 # 1pgl2.125.290 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 1pgl2 291 :IQE T0287 129 :IMFKM 1pgl2 295 :VVLKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27713 # 2awgA.125.9 read from T0287.t06.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2awgA)L101 because G (3-10) conformation "forbidden" or filtered. T0287 125 :FSK 2awgA 97 :LGN T0287 130 :MFKM 2awgA 102 :LRKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27715 # 2bsfA.125.89 read from T0287.t06.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 2bsfA 240 :TSN T0287 129 :IMFKM 2bsfA 244 :VLLTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27717 # 1vcaA.125.104 read from T0287.t06.many.frag # found chain 1vcaA in training set Warning: unaligning (T0287)S126 (1vcaA)G106 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :F 1vcaA 105 :A T0287 127 :KPIMFKM 1vcaA 107 :KPITVKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27719 # 1v05A.125.20 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)S126 (1v05A)G2651 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)K132 (1v05A)T2657 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :F 1v05A 2650 :V T0287 127 :KP 1v05A 2652 :QK T0287 131 :F 1v05A 2656 :F T0287 133 :M 1v05A 2658 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=27723 # 2fojA.125.14 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSK 2fojA 65 :WRS T0287 129 :IMFKM 2fojA 69 :ATFQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27725 # 1uh4A.125.585 read from T0287.t06.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)M130 (1uh4A)T591 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1uh4A)V594 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSKPI 1uh4A 586 :DSVSH T0287 131 :FK 1uh4A 592 :VN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27727 # 1l6pA.125.76 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSK 1l6pA 77 :YRD T0287 129 :IMF 1l6pA 81 :LTL T0287 133 :M 1l6pA 85 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=27730 # 2bbdA.125.126 read from T0287.t06.many.frag # found chain 2bbdA in template set Warning: unaligning (T0287)F125 (2bbdA)M128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bbdA)N131 because L (left) conformation "forbidden" or filtered. T0287 126 :SK 2bbdA 129 :VQ T0287 129 :IMFKM 2bbdA 132 :IILSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27732 # 1te0A.126.302 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 127 :K 1te0A 340 :K T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=27734 # 1dkiA.126.198 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 126 :SKPIMFKMS 1dkiA 81 :NHPKNLFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27735 # 2bjqA.126.40 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)F131 (2bjqA)G46 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SKPIM 2bjqA 41 :GKPIH T0287 132 :KMS 2bjqA 47 :RAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27737 # 1quqB.126.21 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1quqB 23 :KPVCFVGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27738 # 1y8xB.126.86 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 T0287 126 :SKPIMFKM 1y8xB 431 :PQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27739 # 1gnyA.126.102 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1gnyA 193 :D T0287 128 :PIMFKMS 1gnyA 195 :DLTLTCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27741 # 1flmA.126.23 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 126 :S 1flmA 24 :D T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :S 1flmA 32 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=27744 # 1dg6A.126.126 read from T0287.t06.many.frag # found chain 1dg6A in training set T0287 126 :SKPIMFKMS 1dg6A 217 :PAPILLMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27745 # 1crzA.126.282 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 126 :SKPIMFKMS 1crzA 289 :GRPQVYKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27746 # 1hynP.126.237 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1hynP 238 :E T0287 128 :PIMFKMS 1hynP 240 :PVLGFVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27748 # 1crzA.126.238 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 126 :SKPIMFKMS 1crzA 245 :GSLNLYVMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27749 # 1ttwA.126.44 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 134 :S 1ttwA 53 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=27751 # 1pgl2.126.291 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 1pgl2 292 :QE T0287 129 :IMFKMS 1pgl2 295 :VVLKFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27753 # 1gvp.126.39 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 126 :SKPIMFK 1gvp 40 :EYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27754 # 1ikoP.126.78 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1ikoP 108 :D T0287 128 :PIMFKMS 1ikoP 110 :DVKFTIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27756 # 1v05A.126.21 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 126 :SKP 1v05A 2651 :GQK T0287 131 :FKMS 1v05A 2656 :FTVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27758 # 1b7yA.126.261 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 126 :S 1b7yA 262 :E T0287 128 :PIMFKMS 1b7yA 264 :GAQFAVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27760 # 1l6pA.126.77 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K127 (1l6pA)D79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :S 1l6pA 78 :R T0287 129 :IMF 1l6pA 81 :LTL T0287 133 :MS 1l6pA 85 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=27763 # 1ddlA.126.124 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1ddlA 125 :VKPIDV T0287 133 :MS 1ddlA 132 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27765 # 1zsqA.126.50 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 128 :PIMF 1zsqA 122 :PFVL T0287 133 :MS 1zsqA 127 :AS Number of specific fragments extracted= 2 number of extra gaps= 2 total=27767 # 1wmxA.126.130 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 126 :S 1wmxA 131 :T T0287 129 :IM 1wmxA 134 :QH T0287 133 :MS 1wmxA 138 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27770 # 1ogoX.126.154 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)K132 (1ogoX)S161 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1ogoX 155 :ANGRKF T0287 133 :MS 1ogoX 162 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27772 # 2fojA.126.15 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 2fojA 66 :RS T0287 129 :IMFKMS 2fojA 69 :ATFQFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27774 # 1vcaA.126.105 read from T0287.t06.many.frag # found chain 1vcaA in training set Warning: unaligning (T0287)S126 (1vcaA)G106 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1vcaA 107 :KPITVKCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=27775 # 2awgA.126.10 read from T0287.t06.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)K127 (2awgA)N99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2awgA)T106 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :S 2awgA 98 :G T0287 129 :IMFKM 2awgA 101 :LLRKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27777 # 1w0pA.126.424 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :S 1w0pA 425 :S T0287 128 :PIMFKMS 1w0pA 427 :PIILQSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27779 # 2d9rA.126.18 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MS 2d9rA 26 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27781 # 1mspA.126.64 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1mspA)A71 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 1mspA 65 :KE T0287 129 :IMF 1mspA 68 :VLM T0287 133 :MS 1mspA 72 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=27784 # 1mwpA.126.61 read from T0287.t06.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M130 (1mwpA)T93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1mwpA)Q95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 126 :SKPI 1mwpA 89 :NQPV T0287 131 :F 1mwpA 94 :I T0287 134 :S 1mwpA 97 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=27787 # 1nwzA.126.99 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 127 :KPIM 1nwzA 101 :TPTK T0287 133 :MS 1nwzA 107 :VH Number of specific fragments extracted= 2 number of extra gaps= 2 total=27789 # 1te0A.127.303 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 T0287 127 :K 1te0A 340 :K T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=27791 # 1quqB.127.22 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)K132 (1quqB)V28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMF 1quqB 23 :KPVCF T0287 134 :SI 1quqB 30 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27793 # 1gnyA.127.103 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1gnyA 195 :DLTLTCTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27794 # 1dkiA.127.199 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 127 :KPIMFKMSI 1dkiA 82 :HPKNLFAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27795 # 2bjqA.127.41 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 T0287 128 :PIMFKM 2bjqA 43 :PIHGRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=27796 # 1y8xB.127.87 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 127 :KPIMFKM 1y8xB 432 :QTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27797 # 1dg6A.127.127 read from T0287.t06.many.frag # found chain 1dg6A in training set T0287 127 :KPIMFKMSI 1dg6A 218 :APILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27798 # 1pgl2.127.292 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1pgl2 293 :E T0287 129 :IMFKMSI 1pgl2 295 :VVLKFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27800 # 1wmxA.127.131 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSI 1wmxA 138 :IPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27802 # 1l6pA.127.78 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K127 (1l6pA)D79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1l6pA 81 :LTLPVTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27803 # 1flmA.127.24 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 127 :KPIMF 1flmA 25 :GPHLV T0287 134 :SI 1flmA 32 :WN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27805 # 1ddlA.127.125 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)I135 (1ddlA)L134 because G (3-10) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1ddlA 126 :KPIDVEAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27806 # 1gvp.127.40 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 127 :KPIMFK 1gvp 41 :YPVLVK T0287 135 :I 1gvp 49 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27808 # 1crzA.127.283 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 290 :RPQVYKVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27809 # 1ikoP.127.79 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ikoP)I115 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PI 1ikoP 110 :DV T0287 131 :FK 1ikoP 113 :FT T0287 134 :SI 1ikoP 116 :KF Number of specific fragments extracted= 3 number of extra gaps= 3 total=27812 # 1v05A.127.22 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 127 :KP 1v05A 2652 :QK T0287 131 :FKMSI 1v05A 2656 :FTVDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27814 # 2d9rA.127.19 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 Warning: unaligning (T0287)S134 (2d9rA)I27 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :M 2d9rA 26 :A T0287 135 :I 2d9rA 28 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=27817 # 1b7yA.127.262 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1b7yA 264 :GAQFAVWW Number of specific fragments extracted= 1 number of extra gaps= 1 total=27818 # 1ogoX.127.155 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 127 :KPIMFKMSI 1ogoX 156 :NGRKFSVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27819 # 1zsqA.127.51 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMSI 1zsqA 122 :PFVLDASL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27820 # 1qexA.127.155 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMFK 1qexA 156 :STSVWN T0287 134 :SI 1qexA 163 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27822 # 2fojA.127.16 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 2fojA 67 :S T0287 129 :IMFKMSI 2fojA 69 :ATFQFTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27824 # 1ttwA.127.45 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :MSI 1ttwA 52 :MRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=27826 # 1mspA.127.65 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1mspA 66 :E T0287 129 :IMFKMSI 1mspA 68 :VLMAVSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27828 # 1crzA.127.239 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 246 :SLNLYVMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27829 # 1mwpA.127.62 read from T0287.t06.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 127 :KPIMFK 1mwpA 90 :QPVTIQ T0287 134 :SI 1mwpA 97 :WC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27831 # 1w0pA.127.425 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1w0pA 427 :PIILQSEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=27832 # 1vcaA.127.106 read from T0287.t06.many.frag # found chain 1vcaA in training set T0287 127 :KPIMFKMSI 1vcaA 107 :KPITVKCSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27833 # 2awgA.127.11 read from T0287.t06.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :K 2awgA 99 :N T0287 129 :IMFKMSI 2awgA 101 :LLRKKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27835 # 1iq4A.127.123 read from T0287.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0287)K127 (1iq4A)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1iq4A)R125 because G (3-10) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1iq4A 126 :GNYTLGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27836 # 1te0A.128.304 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=27837 # 1gnyA.128.104 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 128 :PIMFKMSIR 1gnyA 195 :DLTLTCTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=27838 # 1quqB.128.23 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :P 1quqB 24 :P T0287 130 :MFKMSIR 1quqB 26 :CFVGRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27840 # 1pgl2.128.293 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1pgl2 295 :VVLKFSQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27841 # 1dkiA.128.200 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 128 :PIMFKMSIR 1dkiA 83 :PKNLFAAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27842 # 1l6pA.128.79 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1l6pA 81 :LTLPVTIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27843 # 1dg6A.128.128 read from T0287.t06.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 T0287 128 :PIMFKMSI 1dg6A 219 :PILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27844 # 1ddlA.128.126 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ddlA)L134 because G (3-10) conformation "forbidden" or filtered. T0287 128 :PIMF 1ddlA 127 :PIDV T0287 133 :MS 1ddlA 132 :AN T0287 136 :R 1ddlA 135 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=27847 # 1y8xB.128.88 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 128 :PIMFKM 1y8xB 433 :TVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27848 # 1gvp.128.41 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 128 :PIMFK 1gvp 42 :PVLVK T0287 135 :IR 1gvp 49 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27850 # 1ikoP.128.80 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKMSIR 1ikoP 113 :FTIKFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27852 # 1wmxA.128.132 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 Warning: unaligning (T0287)S134 (1wmxA)P139 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IM 1wmxA 134 :QH T0287 133 :M 1wmxA 138 :I T0287 135 :IR 1wmxA 140 :LR Number of specific fragments extracted= 3 number of extra gaps= 3 total=27855 # 2d9rA.128.20 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSIR 2d9rA 26 :AIIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27857 # 1qexA.128.156 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFK 1qexA 157 :TSVWN T0287 134 :SI 1qexA 163 :SI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27859 # 2bjqA.128.42 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 T0287 128 :PIMFKM 2bjqA 43 :PIHGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27860 # 1flmA.128.25 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SIR 1flmA 32 :WNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27862 # 1v05A.128.23 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :P 1v05A 2653 :K T0287 132 :KMSIR 1v05A 2657 :TVDCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27864 # 1crzA.128.284 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)M130 (1crzA)V293 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PI 1crzA 291 :PQ T0287 131 :FKMSIR 1crzA 294 :YKVNIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27866 # 1b7yA.128.263 read from T0287.t06.many.frag # found chain 1b7yA in template set T0287 128 :PIMFKMSIR 1b7yA 264 :GAQFAVWWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27867 # 2fojA.128.17 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2fojA 69 :ATFQFTVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27868 # 1mspA.128.66 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1mspA)A71 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMF 1mspA 68 :VLM T0287 133 :MSIR 1mspA 72 :VSCD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27870 # 2bzgA.128.114 read from T0287.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)P128 (2bzgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2bzgA 129 :SLYCCSIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27871 # 1ttwA.128.46 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)M133 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ttwA)A54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 132 :K 1ttwA 51 :F T0287 134 :S 1ttwA 53 :R Number of specific fragments extracted= 3 number of extra gaps= 4 total=27874 # 1zsqA.128.52 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 128 :PIMF 1zsqA 122 :PFVL T0287 133 :MSIR 1zsqA 127 :ASLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27876 # 1ogoX.128.156 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 128 :PIMFKMSIR 1ogoX 157 :GRKFSVEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27877 # 1mwpA.128.63 read from T0287.t06.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)K132 (1mwpA)Q95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 128 :PIMF 1mwpA 91 :PVTI T0287 134 :SIR 1mwpA 97 :WCK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27879 # 2f15A.128.21 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)P128 (2f15A)E89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 134 :SIR 2f15A 95 :SFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27881 # 1uh4A.128.588 read from T0287.t06.many.frag # found chain 1uh4A in template set T0287 128 :PIMFKMSIR 1uh4A 589 :SHTVNVPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27882 # 2cy7A.128.305 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 128 :PIMFKMSIR 2cy7A 303 :HPPCRMSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27883 # 1vajA.128.113 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 128 :PIMFKMSIR 1vajA 114 :PELIEGPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27884 # 1te0A.129.305 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :E 1te0A 350 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=27886 # 1pgl2.129.294 read from T0287.t06.many.frag # found chain 1pgl2 in template set T0287 129 :IMFKMSIRE 1pgl2 295 :VVLKFSQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27887 # 1gnyA.129.105 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 129 :IMFKMSIRE 1gnyA 196 :LTLTCTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27888 # 1l6pA.129.80 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)E137 (1l6pA)Q89 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1l6pA 81 :LTLPVTIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27889 # 1dkiA.129.201 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 129 :IMFKMSIRE 1dkiA 84 :KNLFAAIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=27890 # 1quqB.129.24 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1quqB 25 :VCFV T0287 134 :SIRE 1quqB 30 :RLEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27892 # 1ddlA.129.127 read from T0287.t06.many.frag # found chain 1ddlA in template set T0287 129 :IMFKMSIRE 1ddlA 128 :IDVEANLTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27893 # 1qexA.129.157 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1qexA 158 :SVWN T0287 134 :SI 1qexA 163 :SI T0287 137 :E 1qexA 166 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=27896 # 2d9rA.129.21 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 Warning: unaligning (T0287)E137 (2d9rA)Q30 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IM 2d9rA 22 :IE T0287 133 :MSIR 2d9rA 26 :AIIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=27898 # 1v05A.129.24 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)K132 (1v05A)T2657 because E (beta_S) conformation "forbidden" or filtered. T0287 131 :F 1v05A 2656 :F T0287 133 :MSIRE 1v05A 2658 :VDCSK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27900 # 2cy7A.129.306 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 129 :IMFKMSIRE 2cy7A 304 :PPCRMSIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27901 # 1gvp.129.42 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 129 :IMFK 1gvp 43 :VLVK T0287 135 :IRE 1gvp 49 :LDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27903 # 1ikoP.129.81 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ikoP 111 :V T0287 131 :FKMSIRE 1ikoP 113 :FTIKFQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27905 # 1mspA.129.67 read from T0287.t06.many.frag # found chain 1mspA in template set T0287 129 :IMFKMSIRE 1mspA 68 :VLMAVSCDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27906 # 1dg6A.129.129 read from T0287.t06.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1dg6A)N228 T0287 129 :IMFKMSI 1dg6A 220 :ILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27907 # 1b7yA.129.264 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)I129 (1b7yA)A265 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1b7yA)A268 because E (beta_S) conformation "forbidden" or filtered. T0287 130 :MF 1b7yA 266 :QF T0287 133 :MSIRE 1b7yA 269 :VWWPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=27909 # 1wmxA.129.133 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIRE 1wmxA 138 :IPLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27911 # 2fojA.129.18 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)I129 (2fojA)A69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 2fojA 70 :TFQFTVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=27912 # 2f15A.129.22 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 134 :SIR 2f15A 95 :SFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27914 # 1ng0A.129.179 read from T0287.t06.many.frag # found chain 1ng0A in template set T0287 129 :IMFKMSIRE 1ng0A 180 :VTSALPCDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27915 # 1vajA.129.114 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 129 :IMFKMSIRE 1vajA 115 :ELIEGPPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27916 # 1ttwA.129.47 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ttwA)A54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 133 :MS 1ttwA 52 :MR Number of specific fragments extracted= 2 number of extra gaps= 2 total=27918 # 1ntvA.129.81 read from T0287.t06.many.frag # found chain 1ntvA in training set T0287 129 :IMFKMSIRE 1ntvA 104 :LQHHHAVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27919 # 1wyzA.129.206 read from T0287.t06.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1wyzA 207 :FIQT T0287 134 :SIRE 1wyzA 212 :TVKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27921 # 1wthD.129.83 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1wthD 84 :KTRIYGCK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27922 # 2bzgA.129.115 read from T0287.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)M133 (2bzgA)C133 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 2bzgA 129 :SLYC T0287 134 :SIRE 2bzgA 134 :SIFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27924 # 2bjqA.129.43 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 T0287 129 :IMFKM 2bjqA 44 :IHGRA T0287 137 :E 2bjqA 52 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=27926 # 1crzA.129.285 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 129 :IMFKMSIRE 1crzA 292 :QVYKVNING Number of specific fragments extracted= 1 number of extra gaps= 0 total=27927 # 2bvcA.129.40 read from T0287.t06.many.frag # found chain 2bvcA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (2bvcA)F35 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (2bvcA)F35 T0287 129 :I 2bvcA 33 :Q T0287 132 :KMSIRE 2bvcA 36 :TIPASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27929 # 1c8nA.129.202 read from T0287.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)K132 (1c8nA)D206 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMF 1c8nA 203 :IYV T0287 133 :MSIRE 1c8nA 207 :VDVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27931 # 1te0A.130.306 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)M138 (1te0A)Y351 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :E 1te0A 350 :E Number of specific fragments extracted= 2 number of extra gaps= 3 total=27933 # 1pgl2.130.295 read from T0287.t06.many.frag # found chain 1pgl2 in template set T0287 130 :MFKMSIREM 1pgl2 296 :VLKFSQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27934 # 1l6pA.130.81 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MF 1l6pA 82 :TL T0287 133 :MSIREM 1l6pA 85 :VTINQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27936 # 1gnyA.130.106 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 130 :MFKMSIREM 1gnyA 197 :TLTCTIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=27937 # 1dkiA.130.202 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 130 :MFKMSIREM 1dkiA 85 :NLFAAISTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27938 # 1ddlA.130.128 read from T0287.t06.many.frag # found chain 1ddlA in template set T0287 130 :MFKMSIREM 1ddlA 129 :DVEANLTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27939 # 2cy7A.130.307 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 130 :MFKMSIREM 2cy7A 305 :PCRMSIAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27940 # 1quqB.130.25 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1quqB 26 :CFV T0287 134 :SIREM 1quqB 30 :RLEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27942 # 1vajA.130.115 read from T0287.t06.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)K132 (1vajA)E118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 130 :MF 1vajA 116 :LI T0287 134 :SIREM 1vajA 120 :PPEER Number of specific fragments extracted= 2 number of extra gaps= 1 total=27944 # 2f15A.130.23 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 130 :M 2f15A 91 :F T0287 134 :SIRE 2f15A 95 :SFNN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27946 # 1qexA.130.158 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1qexA 159 :VWN T0287 134 :SI 1qexA 163 :SI T0287 137 :EM 1qexA 166 :SM Number of specific fragments extracted= 3 number of extra gaps= 2 total=27949 # 1b7yA.130.265 read from T0287.t06.many.frag # found chain 1b7yA in template set T0287 130 :MFKMSIREM 1b7yA 266 :QFAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27950 # 1ng0A.130.180 read from T0287.t06.many.frag # found chain 1ng0A in template set T0287 130 :MFKMSIREM 1ng0A 181 :TSALPCDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27951 # 1mspA.130.68 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIRE 1mspA 69 :LMAVSCDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27952 # 1v05A.130.25 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 131 :FKMSIREM 1v05A 2656 :FTVDCSKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27953 # 1gvp.130.43 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)R136 (1gvp)D50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1gvp)G52 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFK 1gvp 44 :LVK T0287 135 :I 1gvp 49 :L T0287 137 :E 1gvp 51 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=27956 # 1wthD.130.84 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1wthD 85 :TRIYGCK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=27958 # 1ikoP.130.82 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1ikoP 113 :FTIKFQEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27959 # 2fojA.130.19 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)S134 (2fojA)T74 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MFKM 2fojA 70 :TFQF T0287 135 :IREM 2fojA 75 :VERF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27961 # 1c8nA.130.203 read from T0287.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)M130 (1c8nA)Y204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1c8nA)F212 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1c8nA 205 :VDVDVTR Number of specific fragments extracted= 1 number of extra gaps= 2 total=27962 # 1wmxA.130.134 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 130 :M 1wmxA 135 :H T0287 133 :MSIREM 1wmxA 138 :IPLRDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27964 # 2d9rA.130.22 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 130 :M 2d9rA 23 :E T0287 133 :MSIREM 2d9rA 26 :AIIRQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27966 # 1wyzA.130.207 read from T0287.t06.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1wyzA 208 :IQT T0287 134 :SIREM 1wyzA 212 :TVKDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27968 # 1ntvA.130.82 read from T0287.t06.many.frag # found chain 1ntvA in training set Warning: unaligning (T0287)K132 (1ntvA)H107 because E (beta_S) conformation "forbidden" or filtered. T0287 130 :MF 1ntvA 105 :QH T0287 133 :MSIREM 1ntvA 108 :HAVHEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27970 # 1ttwA.130.48 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)T58 T0287 133 :MSI 1ttwA 52 :MRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=27971 # 1nls.130.61 read from T0287.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 Warning: unaligning (T0287)E137 (1nls)N69 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFKM 1nls 62 :SAVV T0287 136 :R 1nls 68 :P T0287 138 :M 1nls 70 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=27974 # 1msc.130.42 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 130 :MFKMSI 1msc 43 :KVTCSV T0287 138 :M 1msc 51 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=27976 # 1gmeA.130.55 read from T0287.t06.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1gmeA)V64 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1gmeA 56 :VFKADLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27977 # 1ve2A.130.194 read from T0287.t06.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)M133 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1ve2A 195 :VRL T0287 134 :SIREM 1ve2A 199 :RVEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27979 # 1e2wA.130.190 read from T0287.t06.many.frag # found chain 1e2wA in training set T0287 130 :MFKMSIREM 1e2wA 191 :GFEVSIEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27980 # 1l6pA.131.82 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :F 1l6pA 83 :L T0287 133 :MSIREMD 1l6pA 85 :VTINQAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27982 # 1pgl2.131.296 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)R136 (1pgl2)E302 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMSI 1pgl2 297 :LKFSQ T0287 137 :EMD 1pgl2 303 :EFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27984 # 1te0A.131.307 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=27986 # 1gnyA.131.107 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 131 :FKMSIREMD 1gnyA 198 :LTCTIDEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27987 # 2cy7A.131.308 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 131 :FKMSIREMD 2cy7A 306 :CRMSIAELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27988 # 2f15A.131.24 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIRE 2f15A 94 :GSFNN T0287 139 :D 2f15A 100 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=27990 # 1ng0A.131.181 read from T0287.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)I135 (1ng0A)C186 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMS 1ng0A 182 :SALP T0287 136 :REMD 1ng0A 187 :DEFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27992 # 1vajA.131.116 read from T0287.t06.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 131 :FK 1vajA 117 :IE T0287 134 :SIREMD 1vajA 120 :PPEERP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27994 # 1bco.131.285 read from T0287.t06.many.frag # found chain 1bco in template set T0287 131 :FKMSIREMD 1bco 533 :VRFDPQQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27995 # 1qexA.131.159 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1qexA 160 :WN T0287 134 :SI 1qexA 163 :SI T0287 137 :EMD 1qexA 166 :SMF Number of specific fragments extracted= 3 number of extra gaps= 2 total=27998 # 1ddlA.131.129 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)I135 (1ddlA)L134 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMS 1ddlA 130 :VEAN T0287 136 :REMD 1ddlA 135 :TNLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28000 # 1mspA.131.69 read from T0287.t06.many.frag # found chain 1mspA in template set T0287 131 :FKMSIREMD 1mspA 70 :MAVSCDTFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28001 # 1c8nA.131.204 read from T0287.t06.many.frag # found chain 1c8nA in template set T0287 131 :FKMSIREMD 1c8nA 205 :VDVDVTRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28002 # 1dkiA.131.203 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 131 :FKMSIREMD 1dkiA 86 :LFAAISTRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28003 # 1c96A.131.309 read from T0287.t06.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 T0287 131 :FKMSIREM 1c96A 311 :IEINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28004 # 1e2wA.131.191 read from T0287.t06.many.frag # found chain 1e2wA in training set T0287 131 :FKMSIREMD 1e2wA 192 :FEVSIEKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28005 # 1wthD.131.85 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIR 1wthD 86 :RIYGCK T0287 138 :MD 1wthD 93 :FS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28007 # 1msc.131.43 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)D139 (1msc)S52 because N (gamma') conformation "forbidden" or filtered. T0287 131 :FKMSI 1msc 44 :VTCSV T0287 138 :M 1msc 51 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=28009 # 1b7yA.131.266 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)S134 (1b7yA)W270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1b7yA)G275 because L (left) conformation "forbidden" or filtered. T0287 131 :FKM 1b7yA 267 :FAV T0287 135 :IREM 1b7yA 271 :WPEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28011 # 1wyzA.131.208 read from T0287.t06.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1wyzA 209 :QT T0287 134 :SIREMD 1wyzA 212 :TVKDWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28013 # 1xt5A.131.72 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1xt5A)Y73 Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :EMD 1xt5A 79 :DFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28015 # 1nls.131.62 read from T0287.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 Warning: unaligning (T0287)R136 (1nls)P68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1nls)N69 because T (delta_L) conformation "forbidden" or filtered. T0287 131 :FKM 1nls 63 :AVV T0287 138 :MD 1nls 70 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28017 # 1gvp.131.44 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)M138 (1gvp)G52 because T (delta_L) conformation "forbidden" or filtered. T0287 131 :FK 1gvp 45 :VK T0287 135 :IRE 1gvp 49 :LDE T0287 139 :D 1gvp 53 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=28020 # 1gmeA.131.56 read from T0287.t06.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSIR 1gmeA 57 :FKADLP T0287 138 :MD 1gmeA 64 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28022 # 1wmxA.131.135 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 133 :MSIREMD 1wmxA 138 :IPLRDLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=28023 # 1v05A.131.26 read from T0287.t06.many.frag # found chain 1v05A in training set T0287 131 :FKMSIREMD 1v05A 2656 :FTVDCSKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28024 # 1s28A.131.53 read from T0287.t06.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. T0287 131 :FKMSI 1s28A 54 :FLSDI T0287 137 :EMD 1s28A 60 :VID Number of specific fragments extracted= 2 number of extra gaps= 1 total=28026 # 1quqB.131.26 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1quqB)K33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1quqB)H35 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FK 1quqB 27 :FV T0287 134 :SIR 1quqB 30 :RLE T0287 138 :M 1quqB 34 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=28029 # 1kq1A.131.31 read from T0287.t06.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1kq1A 32 :MK T0287 134 :SIRE 1kq1A 35 :VIEE T0287 139 :D 1kq1A 40 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=28032 # 1gpqA.131.80 read from T0287.t06.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)K132 (1gpqA)F82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1gpqA)D86 because D (zeta) conformation "forbidden" or filtered. T0287 131 :F 1gpqA 81 :L T0287 133 :MSI 1gpqA 83 :STI T0287 137 :EMD 1gpqA 87 :EKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=28035 # 1l6pA.132.83 read from T0287.t06.many.frag # found chain 1l6pA in training set T0287 132 :KMSIREMDS 1l6pA 84 :PVTINQASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28036 # 1bco.132.286 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1bco 534 :R T0287 134 :SIREMDS 1bco 536 :DPQQLHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28038 # 2cy7A.132.309 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 132 :KMSIREMDS 2cy7A 307 :RMSIAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28039 # 2f15A.132.25 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2f15A)N97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 134 :SI 2f15A 95 :SF T0287 138 :MDS 2f15A 99 :WST Number of specific fragments extracted= 2 number of extra gaps= 2 total=28041 # 1gnyA.132.108 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1gnyA 199 :TCTIDEDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28042 # 1te0A.132.308 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 T0287 132 :KMS 1te0A 345 :QVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28044 # 1vajA.132.117 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 132 :KMSIREMDS 1vajA 118 :EGPPEERPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28045 # 1ng0A.132.182 read from T0287.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)K132 (1ng0A)A183 because E (beta_S) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1ng0A 184 :LPCDEFSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28046 # 1pgl2.132.297 read from T0287.t06.many.frag # found chain 1pgl2 in template set T0287 132 :KMSIREMDS 1pgl2 298 :KFSQEEFLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28047 # 1e2wA.132.192 read from T0287.t06.many.frag # found chain 1e2wA in training set T0287 132 :KMSIREMDS 1e2wA 193 :EVSIEKANG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28048 # 1xt5A.132.73 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1xt5A 74 :KESFGDFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28049 # 1h6lA.132.171 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSI 1h6lA 200 :KVRA T0287 137 :EMD 1h6lA 205 :KMN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28051 # 1luzA.132.15 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :K 1luzA 16 :K T0287 134 :SIREMD 1luzA 18 :RVYEKD Number of specific fragments extracted= 2 number of extra gaps= 2 total=28053 # 1c96A.132.310 read from T0287.t06.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 132 :KMSIREM 1c96A 312 :EINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28054 # 1qexA.132.160 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :K 1qexA 161 :N T0287 134 :SI 1qexA 163 :SI T0287 137 :EMD 1qexA 166 :SMF Number of specific fragments extracted= 3 number of extra gaps= 3 total=28057 # 1hx6A.132.359 read from T0287.t06.many.frag # found chain 1hx6A in training set T0287 132 :KMSIREMDS 1hx6A 361 :VVNPKTVNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28058 # 1kq1A.132.32 read from T0287.t06.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1kq1A)E38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1kq1A 33 :K T0287 134 :SIR 1kq1A 35 :VIE T0287 139 :DS 1kq1A 40 :DK Number of specific fragments extracted= 3 number of extra gaps= 2 total=28061 # 1wyzA.132.209 read from T0287.t06.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1wyzA 210 :T T0287 134 :SIREMDS 1wyzA 212 :TVKDWKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28063 # 1y4wA.132.335 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1y4wA 355 :HMALKTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28064 # 2airB.132.123 read from T0287.t06.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2airB)A131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSIRE 2airB 124 :SFAVRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28065 # 1s28A.132.54 read from T0287.t06.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)S140 (1s28A)N63 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1s28A 55 :LSDIGVID Number of specific fragments extracted= 1 number of extra gaps= 1 total=28066 # 1wthD.132.86 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIR 1wthD 87 :IYGCK T0287 138 :MDS 1wthD 93 :FSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28068 # 1msc.132.44 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 T0287 132 :KMSI 1msc 45 :TCSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28070 # 1gpqA.132.81 read from T0287.t06.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1gpqA 82 :FSTIDEKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28071 # 1ddlA.132.130 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ddlA)L134 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1ddlA)N138 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MS 1ddlA 132 :AN T0287 136 :REM 1ddlA 135 :TNL T0287 140 :S 1ddlA 139 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=28074 # 1c8nA.132.205 read from T0287.t06.many.frag # found chain 1c8nA in template set T0287 132 :KMSIREMDS 1c8nA 206 :DVDVTRFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28075 # 1mspA.132.70 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIRE 1mspA 71 :AVSCDT T0287 139 :DS 1mspA 78 :NA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28077 # 1s3rA.132.261 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIR 1s3rA 259 :TASVD T0287 138 :MDS 1s3rA 265 :PNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28079 # 1ve2A.132.196 read from T0287.t06.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)D139 (1ve2A)P204 because C (cis) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1ve2A 197 :LGRVEDL T0287 140 :S 1ve2A 205 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=28081 # 2ayh.132.120 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M133 (2ayh)Y122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 2ayh 121 :N T0287 134 :SI 2ayh 123 :YT T0287 138 :M 2ayh 127 :V T0287 140 :S 2ayh 129 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=28085 # 1bco.133.287 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMDSQ 1bco 536 :DPQQLHST Number of specific fragments extracted= 1 number of extra gaps= 1 total=28086 # 1l6pA.133.84 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)E137 (1l6pA)Q89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIR 1l6pA 85 :VTIN T0287 138 :MDS 1l6pA 90 :ASA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28088 # 2f15A.133.26 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIRE 2f15A 94 :GSFNN T0287 139 :DSQ 2f15A 100 :STK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28090 # 1luzA.133.16 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREM 1luzA 18 :RVYEK T0287 140 :S 1luzA 24 :Y Number of specific fragments extracted= 2 number of extra gaps= 3 total=28092 # 1h6lA.133.172 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1h6lA 201 :VRAFKMNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28093 # 2cy7A.133.310 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 133 :MSIREMDSQ 2cy7A 308 :MSIAELDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28094 # 1xt5A.133.74 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xt5A)F80 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xt5A)L81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSI 1xt5A 75 :ESF T0287 137 :E 1xt5A 79 :D T0287 141 :Q 1xt5A 83 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=28097 # 1vajA.133.118 read from T0287.t06.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREMDSQ 1vajA 120 :PPEERPRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28098 # 1y4wA.133.336 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 133 :M 1y4wA 356 :M T0287 135 :IREM 1y4wA 358 :LKTI T0287 141 :Q 1y4wA 364 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=28101 # 1hx6A.133.360 read from T0287.t06.many.frag # found chain 1hx6A in training set T0287 133 :MSIREMDSQ 1hx6A 362 :VNPKTVNQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28102 # 1s3rA.133.262 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIR 1s3rA 260 :ASVD T0287 138 :MDSQ 1s3rA 265 :PNSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28104 # 1te0A.133.309 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0287)Q141 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0287 133 :MS 1te0A 346 :VT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28106 # 1gnyA.133.109 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)E137 (1gnyA)E204 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIR 1gnyA 200 :CTID T0287 138 :MD 1gnyA 205 :DD T0287 141 :Q 1gnyA 208 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=28109 # 1kq1A.133.33 read from T0287.t06.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 139 :DSQ 1kq1A 40 :DKY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28111 # 1c96A.133.311 read from T0287.t06.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 Warning: unaligning (T0287)Q141 (1c96A)H321 because E (beta_S) conformation "forbidden" or filtered. T0287 133 :MSIREM 1c96A 313 :INLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28112 # 2airB.133.124 read from T0287.t06.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIRE 2airB 125 :FAVRK T0287 139 :DS 2airB 131 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28114 # 1oygA.133.170 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 T0287 133 :MSIREMDS 1oygA 197 :VNVSASDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28115 # 1e2wA.133.193 read from T0287.t06.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)S140 (1e2wA)G201 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1e2wA)E202 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1e2wA 194 :VSIEKAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28116 # 1zpwX.133.63 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1zpwX 64 :LRIYPVA T0287 141 :Q 1zpwX 72 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=28118 # 1ng0A.133.183 read from T0287.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)I135 (1ng0A)C186 because G (3-10) conformation "forbidden" or filtered. T0287 133 :MS 1ng0A 184 :LP T0287 136 :REMDSQ 1ng0A 187 :DEFSNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28120 # 1pgl2.133.298 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)S140 (1pgl2)T306 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIREMD 1pgl2 299 :FSQEEFL T0287 141 :Q 1pgl2 307 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28122 # 1b66A.133.124 read from T0287.t06.many.frag # found chain 1b66A in template set T0287 133 :MSIREMDSQ 1b66A 129 :VKVYETDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28123 # 1msc.133.45 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 T0287 133 :MSI 1msc 46 :CSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28125 # 1mkfA.133.319 read from T0287.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)D139 (1mkfA)D326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREM 1mkfA 320 :LQMTSH T0287 141 :Q 1mkfA 328 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=28127 # 1obdA.133.219 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1obdA 220 :FGIDEKT T0287 141 :Q 1obdA 228 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28129 # 1gpqA.133.82 read from T0287.t06.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)R136 (1gpqA)D86 because D (zeta) conformation "forbidden" or filtered. T0287 133 :MSI 1gpqA 83 :STI T0287 137 :EMDSQ 1gpqA 87 :EKTSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28131 # 2ayh.133.121 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M133 (2ayh)Y122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 2ayh 123 :YT T0287 138 :M 2ayh 127 :V T0287 140 :SQ 2ayh 129 :GH Number of specific fragments extracted= 3 number of extra gaps= 3 total=28134 # 1qexA.133.161 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1qexA)S166 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSI 1qexA 162 :YSI T0287 138 :MDSQ 1qexA 167 :MFGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28136 # 1wthD.133.87 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wthD)I104 T0287 133 :MSIR 1wthD 88 :YGCK T0287 138 :M 1wthD 93 :F T0287 140 :S 1wthD 95 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=28139 # 1s28A.133.55 read from T0287.t06.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)S134 (1s28A)D57 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s28A)N63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1s28A)L64 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :M 1s28A 56 :S T0287 135 :IREMD 1s28A 58 :IGVID Number of specific fragments extracted= 2 number of extra gaps= 2 total=28141 # 1bco.134.288 read from T0287.t06.many.frag # found chain 1bco in template set T0287 134 :SIREMDSQI 1bco 536 :DPQQLHSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28142 # 1luzA.134.17 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREMD 1luzA 18 :RVYEKD T0287 141 :QI 1luzA 25 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28144 # 1h6lA.134.173 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SI 1h6lA 202 :RA T0287 137 :EMDS 1h6lA 205 :KMNS T0287 142 :I 1h6lA 210 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=28147 # 2f15A.134.27 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIRE 2f15A 95 :SFNN T0287 139 :DSQI 2f15A 100 :STKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28149 # 1xt5A.134.75 read from T0287.t06.many.frag # found chain 1xt5A in template set T0287 134 :SIREMDSQI 1xt5A 76 :SFGDFLGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28150 # 1oygA.134.171 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 134 :SIREMDS 1oygA 198 :NVSASDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28151 # 1zpwX.134.64 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)D139 (1zpwX)A70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREM 1zpwX 65 :RIYPV T0287 141 :QI 1zpwX 72 :QV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28153 # 1vajA.134.119 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 134 :SIREMDSQI 1vajA 120 :PPEERPRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28154 # 1hx6A.134.361 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1hx6A 363 :NPKTVNQ T0287 142 :I 1hx6A 371 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28156 # 1y4wA.134.337 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1y4wA 358 :LKTI T0287 140 :SQI 1y4wA 363 :SKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28158 # 1s3rA.134.263 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMD 1s3rA 261 :SVDSPN T0287 141 :QI 1s3rA 268 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28160 # 2cy7A.134.311 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 134 :SIREMDSQI 2cy7A 309 :SIAELDPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28161 # 1l6pA.134.85 read from T0287.t06.many.frag # found chain 1l6pA in training set T0287 134 :SIREMDSQI 1l6pA 86 :TINQASAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28162 # 1b66A.134.125 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1b66A 130 :KVYE T0287 139 :DSQI 1b66A 135 :DNNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28164 # 1obdA.134.220 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMD 1obdA 221 :GIDEKT T0287 141 :QI 1obdA 228 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28166 # 2airB.134.125 read from T0287.t06.many.frag # found chain 2airB in template set Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMD 2airB 126 :AVRKRA T0287 142 :I 2airB 134 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28168 # 1mkfA.134.320 read from T0287.t06.many.frag # found chain 1mkfA in template set T0287 134 :SIREMDSQI 1mkfA 321 :QMTSHDGVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28169 # 1f00I.134.95 read from T0287.t06.many.frag # found chain 1f00I in template set T0287 134 :SIREMDSQI 1f00I 753 :TLTIDDGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28170 # 1l4dB.134.73 read from T0287.t06.many.frag # found chain 1l4dB in template set T0287 134 :SIREMDSQI 1l4dB 99 :EVIDFASDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28171 # 1gpqA.134.83 read from T0287.t06.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)Q141 (1gpqA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1gpqA 84 :TIDEKTS T0287 142 :I 1gpqA 92 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28173 # 1msc.134.46 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1msc)N55 T0287 134 :SI 1msc 47 :SV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28175 # 1kq1A.134.34 read from T0287.t06.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 139 :DSQI 1kq1A 40 :DKYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28177 # 1thtA.134.156 read from T0287.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 134 :SIRE 1thtA 157 :PIDE T0287 140 :SQI 1thtA 163 :NDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28179 # 1olzA.134.325 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1olzA 326 :TV T0287 137 :EMDSQI 1olzA 329 :QSHTKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=28181 # 1c96A.134.312 read from T0287.t06.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 Warning: unaligning (T0287)Q141 (1c96A)H321 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREM 1c96A 314 :NLSEL T0287 142 :I 1c96A 322 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28183 # 1hjrA.134.16 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1hjrA)R23 because G (3-10) conformation "forbidden" or filtered. T0287 134 :S 1hjrA 17 :V T0287 141 :QI 1hjrA 24 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28185 # 1k3bA.134.81 read from T0287.t06.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREM 1k3bA 82 :KYKEE T0287 140 :SQI 1k3bA 88 :SKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28187 # 1tzlA.134.285 read from T0287.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)S134 (1tzlA)V287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :SQI 1tzlA 293 :SEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28189 # 1gnyA.134.110 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMD 1gnyA 201 :TIDEDD T0287 141 :QI 1gnyA 208 :KF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28191 # 2ayh.134.122 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIR 2ayh 123 :YTN T0287 138 :MDSQI 2ayh 127 :VGGHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28193 # 1bco.135.289 read from T0287.t06.many.frag # found chain 1bco in template set T0287 135 :IREMDSQIE 1bco 537 :PQQLHSTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28194 # 1xt5A.135.76 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)E143 (1xt5A)S85 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1xt5A 77 :FGDFLGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28195 # 1h6lA.135.174 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :I 1h6lA 203 :A T0287 137 :EMD 1h6lA 205 :KMN T0287 141 :QIE 1h6lA 209 :QTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28198 # 2f15A.135.28 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 135 :IR 2f15A 96 :FN T0287 139 :DSQIE 2f15A 100 :STKIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28200 # 1luzA.135.18 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :I 1luzA 19 :V T0287 137 :EMDS 1luzA 21 :EKDY T0287 142 :IE 1luzA 26 :LY Number of specific fragments extracted= 3 number of extra gaps= 2 total=28203 # 1oygA.135.172 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 135 :IRE 1oygA 199 :VSA T0287 139 :DS 1oygA 203 :DS T0287 143 :E 1oygA 207 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=28206 # 1zpwX.135.65 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IREMD 1zpwX 66 :IYPVA T0287 142 :IE 1zpwX 73 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28208 # 1hx6A.135.362 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1hx6A 364 :PKTVNQNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28209 # 1hjrA.135.17 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=28210 # 1vajA.135.120 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 135 :IREMDSQIE 1vajA 121 :PEERPRKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28211 # 1f00I.135.96 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1f00I 754 :LTIDDGNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28212 # 1olzA.135.326 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 135 :I 1olzA 327 :V T0287 137 :EM 1olzA 329 :QS T0287 140 :SQIE 1olzA 332 :TKWV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28215 # 1s3rA.135.264 read from T0287.t06.many.frag # found chain 1s3rA in template set T0287 135 :IREMDSQIE 1s3rA 262 :VDSPNSPSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28216 # 2d0oA.135.474 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)E137 (2d0oA)H477 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IR 2d0oA 475 :LR T0287 138 :MDSQIE 2d0oA 478 :EDGSVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28218 # 1l4dB.135.74 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1l4dB)T108 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IR 1l4dB 100 :VI T0287 138 :MDSQI 1l4dB 103 :FASDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28220 # 1y4wA.135.338 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1y4wA 358 :LKTI T0287 140 :SQIE 1y4wA 363 :SKAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28222 # 1mkfA.135.321 read from T0287.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IREMD 1mkfA 322 :MTSHD T0287 141 :QIE 1mkfA 328 :VWT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28224 # 1obdA.135.221 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 135 :IREMD 1obdA 222 :IDEKT T0287 141 :QIE 1obdA 228 :EII Number of specific fragments extracted= 2 number of extra gaps= 1 total=28226 # 1b66A.135.126 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IRE 1b66A 131 :VYE T0287 139 :DSQIE 1b66A 135 :DNNIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28228 # 1tzlA.135.286 read from T0287.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :SQIE 1tzlA 293 :SEIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28230 # 1obfO.135.221 read from T0287.t06.many.frag # found chain 1obfO in training set T0287 135 :IREMDSQIE 1obfO 222 :LPELDGKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28231 # 1k3bA.135.82 read from T0287.t06.many.frag # found chain 1k3bA in template set T0287 135 :IREMDSQIE 1k3bA 83 :YKEEGSKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28232 # 1thtA.135.157 read from T0287.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 135 :IRE 1thtA 158 :IDE T0287 140 :SQIE 1thtA 163 :NDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28234 # 2c5qA.135.140 read from T0287.t06.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)I135 (2c5qA)S141 because G (3-10) conformation "forbidden" or filtered. T0287 136 :REMDSQIE 2c5qA 142 :CAPKAVVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28235 # 2ayh.135.123 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :I 2ayh 124 :T T0287 137 :EM 2ayh 126 :GV T0287 141 :QIE 2ayh 130 :HEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=28238 # 2airB.135.126 read from T0287.t06.many.frag # found chain 2airB in template set Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IREMD 2airB 127 :VRKRA T0287 141 :QIE 2airB 133 :DIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28240 # 2cy7A.135.312 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 135 :IREMDSQIE 2cy7A 310 :IAELDPSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28241 # 1d3yA.135.98 read from T0287.t06.many.frag # found chain 1d3yA in template set T0287 135 :IREMDSQIE 1d3yA 167 :CTKLGTGAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28242 # 1xmtA.135.29 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IR 1xmtA 30 :MR T0287 140 :SQIE 1xmtA 35 :KVMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28244 # 1l6pA.135.86 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IREMDS 1l6pA 87 :INQASA T0287 142 :IE 1l6pA 94 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28246 # 1bco.136.290 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1bco 538 :QQLHSTV T0287 144 :L 1bco 546 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=28248 # 1xt5A.136.77 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xt5A)F80 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :E 1xt5A 79 :D T0287 139 :D 1xt5A 81 :L T0287 141 :QIEL 1xt5A 83 :RASV Number of specific fragments extracted= 3 number of extra gaps= 3 total=28251 # 1oygA.136.173 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 136 :RE 1oygA 200 :SA T0287 139 :DS 1oygA 203 :DS T0287 143 :EL 1oygA 207 :NI Number of specific fragments extracted= 3 number of extra gaps= 2 total=28254 # 1h6lA.136.175 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1h6lA)K205 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1h6lA 206 :MNS T0287 142 :IEL 1h6lA 210 :TEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28256 # 1hjrA.136.18 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=28257 # 2f15A.136.29 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)R136 (2f15A)N97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 137 :E 2f15A 98 :N T0287 139 :DSQIEL 2f15A 100 :STKIPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28259 # 1luzA.136.19 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1luzA 21 :EK T0287 142 :IEL 1luzA 26 :LYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28261 # 1zpwX.136.66 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMD 1zpwX 67 :YPVA T0287 142 :IEL 1zpwX 73 :VEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28263 # 1f00I.136.97 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1f00I 755 :TIDDGNI T0287 144 :L 1f00I 763 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28265 # 1olzA.136.327 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)E143 (1olzA)V335 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1olzA 328 :EQSHTKW T0287 144 :L 1olzA 336 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=28267 # 2d0oA.136.475 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :REMD 2d0oA 476 :RHED T0287 141 :QIEL 2d0oA 481 :SVQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28269 # 1obdA.136.222 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)Q141 (1obdA)E228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1obdA)I230 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDS 1obdA 223 :DEKTN T0287 142 :I 1obdA 229 :I T0287 144 :L 1obdA 231 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28272 # 2c5qA.136.141 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 136 :REMDSQIEL 2c5qA 142 :CAPKAVVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28273 # 1hx6A.136.363 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :REMDS 1hx6A 365 :KTVNQ T0287 142 :I 1hx6A 371 :A T0287 144 :L 1hx6A 373 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28276 # 1mkfA.136.322 read from T0287.t06.many.frag # found chain 1mkfA in template set T0287 136 :REMDSQIEL 1mkfA 323 :TSHDGVWTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28277 # 1vajA.136.121 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 136 :REMDSQIEL 1vajA 122 :EERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28278 # 1s3rA.136.265 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :R 1s3rA 263 :D T0287 138 :MDSQIEL 1s3rA 265 :PNSPSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28280 # 1l4dB.136.75 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :R 1l4dB 101 :I T0287 138 :MDSQIEL 1l4dB 103 :FASDATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28282 # 1r6wA.136.12 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1r6wA)V18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 136 :REMDS 1r6wA 11 :IPMDA T0287 142 :I 1r6wA 17 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=28284 # 1b66A.136.127 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)S140 (1b66A)N136 because G (3-10) conformation "forbidden" or filtered. T0287 136 :REMD 1b66A 132 :YETD T0287 141 :QIEL 1b66A 137 :NIVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28286 # 1k3bA.136.83 read from T0287.t06.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)E137 (1k3bA)E85 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1k3bA)T91 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :R 1k3bA 84 :K T0287 138 :M 1k3bA 86 :E T0287 140 :SQI 1k3bA 88 :SKV T0287 144 :L 1k3bA 92 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=28290 # 1ru3A.136.336 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)R136 (1ru3A)R337 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1ru3A)E344 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMDSQI 1ru3A 338 :KGDMHV T0287 144 :L 1ru3A 345 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=28292 # 2ayh.136.124 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2ayh)K132 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :R 2ayh 125 :N T0287 138 :M 2ayh 127 :V T0287 141 :QI 2ayh 130 :HE T0287 144 :L 2ayh 133 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=28296 # 1rv9A.136.187 read from T0287.t06.many.frag # found chain 1rv9A in training set T0287 136 :REMDSQIEL 1rv9A 188 :PEAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28297 # 1tzlA.136.287 read from T0287.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1tzlA 290 :ALNS T0287 142 :IEL 1tzlA 295 :IES Number of specific fragments extracted= 2 number of extra gaps= 2 total=28299 # 1q67A.136.184 read from T0287.t06.many.frag # found chain 1q67A in template set Warning: unaligning (T0287)R136 (1q67A)E185 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1q67A 186 :VKDELVII Number of specific fragments extracted= 1 number of extra gaps= 1 total=28300 # 1xmtA.136.30 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)Q141 (1xmtA)V36 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDS 1xmtA 31 :RNNGK T0287 142 :IEL 1xmtA 37 :MDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28302 # 1y4wA.136.339 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 136 :REM 1y4wA 359 :KTI T0287 140 :SQIEL 1y4wA 363 :SKATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28304 # 1uekA.136.41 read from T0287.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0287)M138 (1uekA)V44 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :RE 1uekA 42 :EP T0287 139 :DSQIEL 1uekA 45 :SSGLHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28306 # 1d3yA.136.99 read from T0287.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)Q141 (1d3yA)G173 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMDS 1d3yA 168 :TKLGT T0287 142 :IEL 1d3yA 174 :AYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28308 # 1bco.137.291 read from T0287.t06.many.frag # found chain 1bco in template set T0287 137 :EMDSQIELY 1bco 539 :QLHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28309 # 1hjrA.137.19 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 139 :DS 1hjrA 22 :GR T0287 142 :I 1hjrA 25 :L T0287 145 :Y 1hjrA 28 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=28312 # 1xt5A.137.78 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EMD 1xt5A 79 :DFL T0287 141 :QIELY 1xt5A 83 :RASVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28314 # 2c5qA.137.142 read from T0287.t06.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)E143 (2c5qA)K149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. T0287 137 :EMDSQI 2c5qA 143 :APKAVV T0287 144 :L 2c5qA 150 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=28316 # 1f00I.137.98 read from T0287.t06.many.frag # found chain 1f00I in template set T0287 137 :EMDSQIELY 1f00I 756 :IDDGNIEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28317 # 2d0oA.137.476 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 137 :EMDSQIELY 2d0oA 477 :HEDGSVQFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28318 # 1h6lA.137.176 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMD 1h6lA 205 :KMN T0287 141 :QIELY 1h6lA 209 :QTEGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28320 # 1oygA.137.174 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 137 :E 1oygA 201 :A T0287 139 :DS 1oygA 203 :DS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 3 number of extra gaps= 2 total=28323 # 1r6wA.137.13 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 137 :EMDS 1r6wA 12 :PMDA T0287 142 :IE 1r6wA 17 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28325 # 1olzA.137.328 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)S140 (1olzA)T332 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EMD 1olzA 329 :QSH T0287 141 :QIELY 1olzA 333 :KWVRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28327 # 1zpwX.137.67 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EMD 1zpwX 68 :PVA T0287 141 :QIELY 1zpwX 72 :QVEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28329 # 2f15A.137.30 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f15A 100 :STKIPLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28330 # 1obdA.137.223 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1obdA)V232 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMD 1obdA 224 :EKT T0287 141 :QIEL 1obdA 228 :EIIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28332 # 1rv9A.137.188 read from T0287.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)E143 (1rv9A)E195 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMDSQI 1rv9A 189 :EAATAF T0287 144 :LY 1rv9A 196 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28334 # 1luzA.137.20 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1luzA)Y27 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMDS 1luzA 21 :EKDY T0287 142 :I 1luzA 26 :L T0287 144 :LY 1luzA 28 :IY Number of specific fragments extracted= 3 number of extra gaps= 2 total=28337 # 1l4dB.137.76 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1l4dB 103 :FASDATIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28338 # 1s3rA.137.266 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MD 1s3rA 265 :PN T0287 141 :QIELY 1s3rA 268 :PSALF Number of specific fragments extracted= 2 number of extra gaps= 2 total=28340 # 1hx6A.137.364 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDSQI 1hx6A 366 :TVNQNA T0287 144 :LY 1hx6A 373 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28342 # 1ru3A.137.337 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)S140 (1ru3A)M341 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EMD 1ru3A 338 :KGD T0287 141 :QIELY 1ru3A 342 :HVEFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28344 # 1mkfA.137.323 read from T0287.t06.many.frag # found chain 1mkfA in template set T0287 137 :EMDSQIELY 1mkfA 324 :SHDGVWTST Number of specific fragments extracted= 1 number of extra gaps= 0 total=28345 # 1b66A.137.128 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)E143 (1b66A)V139 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMDSQI 1b66A 133 :ETDNNI T0287 144 :LY 1b66A 140 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28347 # 1xmtA.137.31 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1xmtA 34 :GKVMDLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28348 # 1k3bA.137.84 read from T0287.t06.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EM 1k3bA 85 :EE T0287 141 :QIELY 1k3bA 89 :KVTTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28350 # 2ayh.137.125 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EM 2ayh 126 :GV T0287 141 :QIELY 2ayh 130 :HEKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28352 # 1d3yA.137.100 read from T0287.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)D139 (1d3yA)G171 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EM 1d3yA 169 :KL T0287 140 :SQIELY 1d3yA 172 :TGAYNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28354 # 1wubA.137.81 read from T0287.t06.many.frag # found chain 1wubA in training set T0287 137 :EMDSQIELY 1wubA 82 :FVSTQIEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28355 # 1jiwI.137.62 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 137 :EMDSQIELY 1jiwI 63 :PTPAGIALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28356 # 1tzlA.137.288 read from T0287.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :IELY 1tzlA 295 :IESL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28359 # 1vajA.137.122 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 137 :EMDSQIELY 1vajA 123 :ERPRKIKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28360 # 1jiwI.137.9 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)M138 (1jiwI)L11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1jiwI)A12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1jiwI)Q14 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :E 1jiwI 10 :D T0287 142 :IELY 1jiwI 15 :WTLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28362 # 1bco.138.292 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1bco 540 :LHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 1 total=28363 # 2c5qA.138.143 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 138 :MDSQIELYG 2c5qA 144 :PKAVVKAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28364 # 1hjrA.138.20 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1hjrA)R23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 141 :QI 1hjrA 24 :QL T0287 145 :YG 1hjrA 28 :LG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28366 # 2d0oA.138.477 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 138 :MDSQIELYG 2d0oA 478 :EDGSVQFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28367 # 1r6wA.138.14 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 138 :MDSQIE 1r6wA 13 :MDAGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28368 # 1xt5A.138.79 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1xt5A 80 :FLGRASVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28369 # 1f00I.138.99 read from T0287.t06.many.frag # found chain 1f00I in template set T0287 138 :MDSQIELYG 1f00I 757 :DDGNIEIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28370 # 1olzA.138.329 read from T0287.t06.many.frag # found chain 1olzA in template set T0287 138 :MDSQIELYG 1olzA 330 :SHTKWVRYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28371 # 1oygA.138.175 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)G146 (1oygA)G210 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 1oygA 202 :SDS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28373 # 2f15A.138.31 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2f15A)P104 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 2f15A 100 :STKI T0287 144 :LYG 2f15A 105 :LIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28375 # 1rv9A.138.189 read from T0287.t06.many.frag # found chain 1rv9A in training set T0287 138 :MDSQIELYG 1rv9A 190 :AATAFEGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28376 # 1zpwX.138.68 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MD 1zpwX 69 :VA T0287 142 :IELYG 1zpwX 73 :VEVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28378 # 1h6lA.138.177 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1h6lA 206 :MNS T0287 142 :IELYG 1h6lA 210 :TEGMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28380 # 1obdA.138.224 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1obdA)E228 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MD 1obdA 225 :KT T0287 142 :IELYG 1obdA 229 :IILVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28382 # 1s3rA.138.267 read from T0287.t06.many.frag # found chain 1s3rA in template set T0287 138 :MDSQIELYG 1s3rA 265 :PNSPSALFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28383 # 1ru3A.138.338 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)S140 (1ru3A)M341 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MD 1ru3A 339 :GD T0287 141 :QIELYG 1ru3A 342 :HVEFGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28385 # 1luzA.138.21 read from T0287.t06.many.frag # found chain 1luzA in training set T0287 138 :MDSQIELYG 1luzA 22 :KDYALYIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28386 # 1l4dB.138.77 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)M138 (1l4dB)F103 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1l4dB 104 :ASDATITD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28387 # 1ok7A.138.37 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1ok7A 38 :ADGTLSLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28388 # 1jiwI.138.63 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1jiwI 64 :TPA T0287 142 :IELY 1jiwI 68 :IALL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28390 # 1xmtA.138.32 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :SQI 1xmtA 35 :KVM T0287 144 :LY 1xmtA 39 :LV Number of specific fragments extracted= 2 number of extra gaps= 3 total=28392 # 2ayh.138.126 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M138 (2ayh)V127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2ayh 128 :GGHEKVI Number of specific fragments extracted= 1 number of extra gaps= 2 total=28393 # 2bjfA.138.158 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (2bjfA)V165 because D (zeta) conformation "forbidden" or filtered. T0287 138 :MDS 2bjfA 159 :TKE T0287 142 :IE 2bjfA 163 :LN T0287 145 :YG 2bjfA 166 :FD Number of specific fragments extracted= 3 number of extra gaps= 2 total=28396 # 1hx6A.138.365 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hx6A)M375 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1hx6A 367 :VNQ T0287 142 :IELY 1hx6A 371 :ARLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28398 # 1b66A.138.129 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1b66A)K142 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1b66A 135 :DNNIVVY Number of specific fragments extracted= 1 number of extra gaps= 2 total=28399 # 1wubA.138.82 read from T0287.t06.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)Q141 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1wubA)L90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDS 1wubA 83 :VST T0287 142 :IEL 1wubA 87 :IEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28401 # 2f6eA.138.16 read from T0287.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. T0287 138 :MD 2f6eA 18 :ID T0287 141 :QIELYG 2f6eA 21 :KNFYFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28403 # 1jiwI.138.10 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MD 1jiwI 11 :LA T0287 141 :QIELYG 1jiwI 14 :QWTLQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28405 # 1ijqA.138.237 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. T0287 138 :MDS 1ijqA 614 :TGS T0287 142 :IELYG 1ijqA 618 :VNLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28407 # 1k3bA.138.85 read from T0287.t06.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1k3bA)K89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1k3bA)T91 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :M 1k3bA 86 :E T0287 140 :S 1k3bA 88 :S T0287 142 :I 1k3bA 90 :V T0287 144 :LYG 1k3bA 92 :TYC Number of specific fragments extracted= 4 number of extra gaps= 3 total=28411 # 2c5qA.139.144 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 139 :DSQIELYGT 2c5qA 145 :KAVVKAVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28412 # 1bco.139.293 read from T0287.t06.many.frag # found chain 1bco in template set T0287 139 :DSQIELYGT 1bco 541 :HSTVYCYTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28413 # 2d0oA.139.478 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 139 :DSQIELYGT 2d0oA 479 :DGSVQFFST Number of specific fragments extracted= 1 number of extra gaps= 0 total=28414 # 1hjrA.139.21 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)T147 (1hjrA)S30 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :YG 1hjrA 28 :LG Number of specific fragments extracted= 2 number of extra gaps= 3 total=28416 # 1olzA.139.330 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1olzA 332 :TKWVRYNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28417 # 1r6wA.139.15 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 139 :DSQIE 1r6wA 14 :DAGVV T0287 147 :T 1r6wA 22 :R Number of specific fragments extracted= 2 number of extra gaps= 0 total=28419 Number of alignments=1036 # 1f00I.139.100 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)Q141 (1f00I)N760 because D (zeta) conformation "forbidden" or filtered. T0287 139 :DS 1f00I 758 :DG T0287 142 :IELYGT 1f00I 761 :IEIVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28421 # 1rv9A.139.190 read from T0287.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1rv9A 191 :ATAFEGIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28422 # 1ru3A.139.339 read from T0287.t06.many.frag # found chain 1ru3A in template set T0287 139 :DSQIELYGT 1ru3A 340 :DMHVEFGGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28423 # 1ok7A.139.38 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)D139 (1ok7A)D39 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. T0287 141 :QIELY 1ok7A 41 :TLSLT T0287 147 :T 1ok7A 47 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=28425 # 1s3rA.139.268 read from T0287.t06.many.frag # found chain 1s3rA in template set T0287 139 :DSQIELYGT 1s3rA 266 :NSPSALFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28426 # 1xt5A.139.80 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 139 :D 1xt5A 81 :L T0287 141 :QIELYGT 1xt5A 83 :RASVANL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28428 # 1jiwI.139.64 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DS 1jiwI 65 :PA T0287 142 :IELYGT 1jiwI 68 :IALLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=28430 # 1oygA.139.176 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 139 :DS 1oygA 203 :DS T0287 143 :ELYGT 1oygA 207 :NINGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28432 # 2f15A.139.32 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f15A 100 :STKIPLI T0287 147 :T 2f15A 108 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=28434 # 1zpwX.139.69 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1zpwX 70 :A T0287 141 :QIELYGT 1zpwX 72 :QVEVLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28436 # 1wubA.139.83 read from T0287.t06.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)Q141 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DS 1wubA 84 :ST T0287 142 :IELYGT 1wubA 87 :IEPLGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28438 # 1ijqA.139.238 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. T0287 139 :DS 1ijqA 615 :GS T0287 142 :IELYGT 1ijqA 618 :VNLLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28440 # 1xmtA.139.33 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1xmtA 35 :KVMDLVHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28441 # 1l4dB.139.78 read from T0287.t06.many.frag # found chain 1l4dB in template set T0287 139 :DSQIELYGT 1l4dB 104 :ASDATITDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28442 # 1hbnB.139.3 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1hbnB 5 :EDKVDLY T0287 147 :T 1hbnB 13 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=28444 # 2bjfA.139.159 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)E143 (2bjfA)N164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 2bjfA 160 :KEKL T0287 144 :LY 2bjfA 165 :VF T0287 147 :T 2bjfA 168 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=28447 # 1obdA.139.225 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1obdA)D233 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1obdA 226 :T T0287 141 :QIELY 1obdA 228 :EIILV T0287 147 :T 1obdA 234 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=28450 # 1luzA.139.22 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :D 1luzA 23 :D T0287 142 :IELYGT 1luzA 26 :LYIYLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28452 # 1gd0A.139.43 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)E143 (1gd0A)A48 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DSQI 1gd0A 44 :DQLM T0287 144 :LYGT 1gd0A 49 :FGGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28454 # 1h6lA.139.178 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 1h6lA 207 :NS T0287 142 :IELYGT 1h6lA 210 :TEGMAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28456 # 2f6eA.139.17 read from T0287.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f6eA 19 :DNKNFYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28457 # 1jiwI.139.11 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1jiwI 12 :A T0287 141 :QIELY 1jiwI 14 :QWTLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=28459 # 1n9eA.139.742 read from T0287.t06.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)E143 (1n9eA)E747 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DSQI 1n9eA 743 :ESNW T0287 144 :LYGT 1n9eA 748 :FYGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28461 # 2ayh.139.127 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :D 2ayh 128 :G T0287 141 :QIELY 2ayh 130 :HEKVI T0287 147 :T 2ayh 136 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28464 # 2c5qA.140.145 read from T0287.t06.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 2c5qA 146 :AVVKA T0287 146 :GT 2c5qA 152 :GT Number of specific fragments extracted= 2 number of extra gaps= 2 total=28466 # 2d0oA.140.479 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 140 :SQIELYGTN 2d0oA 480 :GSVQFFSTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28467 # 1ru3A.140.340 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)S140 (1ru3A)M341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIEL 1ru3A 342 :HVEF T0287 146 :GTN 1ru3A 347 :GGK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28469 # 1bco.140.294 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 1bco 542 :STVYCY T0287 147 :TN 1bco 549 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28471 # 1olzA.140.331 read from T0287.t06.many.frag # found chain 1olzA in template set T0287 140 :SQIELYGTN 1olzA 332 :TKWVRYNGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28472 # 1rv9A.140.191 read from T0287.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)G146 (1rv9A)G198 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIELY 1rv9A 192 :TAFEGI T0287 147 :TN 1rv9A 199 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28474 # 1hjrA.140.22 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :YGT 1hjrA 28 :LGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28476 # 1jiwI.140.65 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :S 1jiwI 66 :A T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG Number of specific fragments extracted= 3 number of extra gaps= 2 total=28479 # 1r6wA.140.16 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)S140 (1r6wA)A15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1r6wA)V18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 Warning: unaligning (T0287)N148 (1r6wA)R23 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QI 1r6wA 16 :GV T0287 147 :T 1r6wA 22 :R Number of specific fragments extracted= 2 number of extra gaps= 3 total=28481 # 1ok7A.140.39 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1ok7A 41 :TLSLTGTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28482 # 1f00I.140.101 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)S140 (1f00I)G759 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1f00I)T766 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1f00I)G767 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYG 1f00I 760 :NIEIVG Number of specific fragments extracted= 1 number of extra gaps= 2 total=28483 # 1s3rA.140.269 read from T0287.t06.many.frag # found chain 1s3rA in template set T0287 140 :SQIELYGTN 1s3rA 267 :SPSALFGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28484 # 1xt5A.140.81 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1xt5A 83 :RASVANLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28485 # 1xmtA.140.34 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E143 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQI 1xmtA 35 :KVM T0287 144 :LYGTN 1xmtA 39 :LVHTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28487 # 2f15A.140.33 read from T0287.t06.many.frag # found chain 2f15A in template set T0287 140 :SQIELYGTN 2f15A 101 :TKIPLIKSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28488 # 1gd0A.140.44 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 1gd0A 45 :QLMAF T0287 146 :GTN 1gd0A 51 :GSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28490 # 1hbnB.140.4 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)S140 (1hbnB)D6 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1hbnB 7 :KVDLYDDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28491 # 1wubA.140.84 read from T0287.t06.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)S140 (1wubA)T85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELY 1wubA 86 :QIEPL T0287 147 :TN 1wubA 92 :GN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28493 # 2bjfA.140.160 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 2bjfA 161 :EKLNVF T0287 147 :TN 2bjfA 168 :NN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28495 # 1xmkA.140.53 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)S140 (1xmkA)G341 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 T0287 141 :QIELYG 1xmkA 342 :DVYRQG Number of specific fragments extracted= 1 number of extra gaps= 2 total=28496 # 1oygA.140.177 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 140 :S 1oygA 204 :S T0287 143 :ELYGTN 1oygA 207 :NINGVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28498 # 1ijqA.140.239 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ijqA)N624 because L (left) conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELYGT 1ijqA 618 :VNLLAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28500 # 1acc.140.537 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)S140 (1acc)G538 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 141 :QI 1acc 539 :NL T0287 144 :L 1acc 542 :Y T0287 146 :GTN 1acc 544 :GKD Number of specific fragments extracted= 3 number of extra gaps= 3 total=28503 # 1zpwX.140.70 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1zpwX)G79 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IELYGT 1zpwX 73 :VEVLGV Number of specific fragments extracted= 1 number of extra gaps= 2 total=28504 # 1lpbA.140.24 read from T0287.t06.many.frag # found chain 1lpbA in template set T0287 140 :SQIELYGTN 1lpbA 25 :SNCCQHDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28505 # 1jiwI.140.12 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELY 1jiwI 14 :QWTLQ T0287 148 :N 1jiwI 21 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=28507 # 1w8kA.140.311 read from T0287.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)G146 (1w8kA)N358 because G (3-10) conformation "forbidden" or filtered. T0287 140 :SQIELY 1w8kA 352 :KKCYIF T0287 147 :TN 1w8kA 359 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28509 # 1n9eA.140.743 read from T0287.t06.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)Y145 (1n9eA)Y749 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 1n9eA 744 :SNWEF T0287 146 :GTN 1n9eA 750 :GND Number of specific fragments extracted= 2 number of extra gaps= 1 total=28511 # 2f6eA.140.18 read from T0287.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2f6eA)K21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYG 2f6eA 22 :NFYFR Number of specific fragments extracted= 1 number of extra gaps= 2 total=28512 # 1ir6A.140.346 read from T0287.t06.many.frag # found chain 1ir6A in template set Warning: unaligning (T0287)Y145 (1ir6A)Y391 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ir6A)H394 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQIEL 1ir6A 386 :DLLLR T0287 146 :GT 1ir6A 392 :GG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28514 # 2c5qA.141.146 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 141 :QIELYGTNL 2c5qA 147 :VVKAVGTNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28515 # 2d0oA.141.480 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 141 :QIELYGTNL 2d0oA 481 :SVQFFSTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28516 # 1ru3A.141.341 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELY 1ru3A 342 :HVEFG T0287 147 :TNL 1ru3A 348 :GKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28518 # 1bco.141.295 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1bco 543 :TVYCY T0287 147 :TNL 1bco 549 :LDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28520 # 1jiwI.141.66 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG Number of specific fragments extracted= 2 number of extra gaps= 3 total=28522 # 1ok7A.141.40 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)E143 (1ok7A)S43 because E (beta_S) conformation "forbidden" or filtered. T0287 141 :QI 1ok7A 41 :TL T0287 144 :LYGTNL 1ok7A 44 :LTGTDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28524 # 1olzA.141.332 read from T0287.t06.many.frag # found chain 1olzA in template set T0287 141 :QIELYGTNL 1olzA 333 :KWVRYNGPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28525 # 1xmkA.141.54 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 141 :QIELYG 1xmkA 342 :DVYRQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28526 # 1gd0A.141.45 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 141 :QIEL 1gd0A 46 :LMAF T0287 146 :GTNL 1gd0A 51 :GSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28528 # 2bjfA.141.161 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)E143 (2bjfA)N164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QI 2bjfA 162 :KL T0287 144 :LY 2bjfA 165 :VF T0287 147 :TNL 2bjfA 168 :NNI Number of specific fragments extracted= 3 number of extra gaps= 2 total=28531 # 1lpbA.141.25 read from T0287.t06.many.frag # found chain 1lpbA in template set T0287 141 :QIELYGTNL 1lpbA 26 :NCCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28532 # 1s3rA.141.270 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1s3rA 268 :PSALFGS T0287 149 :L 1s3rA 276 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28534 # 1r6wA.141.17 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 142 :IE 1r6wA 17 :VV T0287 147 :TNL 1r6wA 22 :RRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28536 # 1xmtA.141.35 read from T0287.t06.many.frag # found chain 1xmtA in training set T0287 141 :QIELYGTNL 1xmtA 36 :VMDLVHTYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28537 # 1pjxA.141.247 read from T0287.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1pjxA)I249 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG Number of specific fragments extracted= 1 number of extra gaps= 2 total=28538 # 1acc.141.538 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1acc 539 :NL T0287 144 :LYGTNL 1acc 542 :YQGKDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28540 # 2f15A.141.34 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f15A)S108 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 T0287 141 :QIELY 2f15A 102 :KIPLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28541 # 1hbnB.141.5 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)L149 (1hbnB)G15 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1hbnB 7 :KVDLYDDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28542 # 1se8A.141.104 read from T0287.t06.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)Q141 (1se8A)R105 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1se8A)G110 because H (helix) conformation "forbidden" or filtered. T0287 142 :IELY 1se8A 106 :MEQL T0287 147 :TNL 1se8A 111 :TQP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28544 # 1jiwI.141.13 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)Q14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 15 :WTLQ T0287 148 :NL 1jiwI 21 :EA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28546 # 1f00I.141.102 read from T0287.t06.many.frag # found chain 1f00I in template set T0287 141 :QIELYGTNL 1f00I 760 :NIEIVGTGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28547 # 1rv9A.141.192 read from T0287.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1rv9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYG 1rv9A 193 :AFEGIG T0287 149 :L 1rv9A 201 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=28549 # 1xt5A.141.82 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)L149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xt5A)P92 T0287 141 :QIELYGTN 1xt5A 83 :RASVANLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28550 # 1w8kA.141.312 read from T0287.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)G146 (1w8kA)N358 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELY 1w8kA 353 :KCYIF T0287 147 :TNL 1w8kA 359 :TKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28552 # 1hjrA.141.23 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1hjrA 24 :QL T0287 145 :YGT 1hjrA 28 :LGS T0287 149 :L 1hjrA 32 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=28555 # 1ijqA.141.240 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELY 1ijqA 618 :VNLL T0287 147 :TNL 1ijqA 623 :ENL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28557 # 1v05A.141.39 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)G146 (1v05A)G2674 because E (beta_S) conformation "forbidden" or filtered. T0287 141 :QIELY 1v05A 2669 :MVGVH T0287 147 :TNL 1v05A 2675 :PKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28559 # 1gxrA.141.246 read from T0287.t06.many.frag # found chain 1gxrA in training set Warning: unaligning (T0287)Q141 (1gxrA)N680 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1gxrA)E682 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1gxrA)H685 because N (gamma') conformation "forbidden" or filtered. T0287 142 :I 1gxrA 681 :V T0287 144 :LY 1gxrA 683 :VL T0287 147 :TNL 1gxrA 686 :VNK Number of specific fragments extracted= 3 number of extra gaps= 3 total=28562 # 1ttuA.141.227 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1ttuA)A417 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QI 1ttuA 414 :AF T0287 145 :Y 1ttuA 418 :S T0287 147 :TNL 1ttuA 420 :TKW Number of specific fragments extracted= 3 number of extra gaps= 2 total=28565 # 1txvA.141.265 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)Q141 (1txvA)A266 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 142 :IELY 1txvA 267 :VEIL T0287 147 :TN 1txvA 272 :SY Number of specific fragments extracted= 2 number of extra gaps= 3 total=28567 # 1bco.142.296 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1bco 544 :VYCY T0287 147 :TNLP 1bco 549 :LDGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28569 # 2c5qA.142.147 read from T0287.t06.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 142 :IELYGT 2c5qA 148 :VKAVGT T0287 149 :LP 2c5qA 155 :VQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28571 # 1ok7A.142.41 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)E143 (1ok7A)S43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ok7A)D48 because G (3-10) conformation "forbidden" or filtered. T0287 142 :I 1ok7A 42 :L T0287 144 :LYGT 1ok7A 44 :LTGT T0287 149 :LP 1ok7A 49 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28574 # 1ru3A.142.342 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)E143 (1ru3A)E344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :I 1ru3A 343 :V T0287 144 :L 1ru3A 345 :F T0287 146 :GTNLP 1ru3A 347 :GGKTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28577 # 1jiwI.142.67 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG T0287 150 :P 1jiwI 76 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28580 # 1xmkA.142.55 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 142 :IELYG 1xmkA 343 :VYRQG T0287 150 :P 1xmkA 351 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=28582 # 2d0oA.142.481 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 142 :IELYGTNLP 2d0oA 482 :VQFFSTPLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28583 # 1gttA.142.188 read from T0287.t06.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1gttA 189 :VRVL T0287 147 :T 1gttA 194 :E T0287 149 :LP 1gttA 196 :FP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28586 # 1lpbA.142.26 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1lpbA 27 :CCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28587 # 1gd0A.142.46 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 142 :IEL 1gd0A 47 :MAF T0287 146 :GTNLP 1gd0A 51 :GSSEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28589 # 1jiwI.142.14 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IELYG 1jiwI 15 :WTLQQ T0287 148 :NLP 1jiwI 21 :EAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28591 # 1pjxA.142.248 read from T0287.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG Number of specific fragments extracted= 1 number of extra gaps= 2 total=28592 # 1txvA.142.266 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. T0287 142 :IELY 1txvA 267 :VEIL T0287 147 :T 1txvA 272 :S T0287 149 :LP 1txvA 274 :YQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=28595 # 2f15A.142.35 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 142 :IELY 2f15A 103 :IPLI T0287 147 :T 2f15A 108 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=28597 # 1v05A.142.40 read from T0287.t06.many.frag # found chain 1v05A in training set T0287 142 :IELYGTNLP 1v05A 2670 :VGVHGPKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28598 # 1acc.142.539 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 142 :I 1acc 540 :L T0287 144 :L 1acc 542 :Y T0287 146 :GTNLP 1acc 544 :GKDIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=28601 # 2bjfA.142.162 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)N148 (2bjfA)N169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2bjfA)G171 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGT 2bjfA 163 :LNVFDN T0287 149 :L 2bjfA 170 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=28603 # 1nqeA.142.549 read from T0287.t06.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)E143 (1nqeA)V551 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1nqeA)T556 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :I 1nqeA 550 :A T0287 144 :LYGT 1nqeA 552 :AYPV T0287 149 :LP 1nqeA 557 :SH Number of specific fragments extracted= 3 number of extra gaps= 2 total=28606 # 1ijqA.142.241 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Y145 (1ijqA)L621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ijqA)E623 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ijqA)L626 because D (zeta) conformation "forbidden" or filtered. T0287 142 :IEL 1ijqA 618 :VNL T0287 148 :NL 1ijqA 624 :NL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28608 # 1olzA.142.333 read from T0287.t06.many.frag # found chain 1olzA in template set T0287 142 :IELYGTNLP 1olzA 334 :WVRYNGPVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28609 # 1k3sA.142.69 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)E143 (1k3sA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1k3sA 70 :I T0287 144 :LYGTNL 1k3sA 72 :ADADNT Number of specific fragments extracted= 2 number of extra gaps= 2 total=28611 # 1gxrA.142.247 read from T0287.t06.many.frag # found chain 1gxrA in training set T0287 142 :IELYGTNLP 1gxrA 681 :VEVLHVNKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28612 # 1s3rA.142.271 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)P150 (1s3rA)T277 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1s3rA 269 :SALFGSGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28613 # 1ttuA.142.228 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1ttuA 415 :F T0287 144 :LY 1ttuA 417 :AS T0287 147 :TNL 1ttuA 420 :TKW Number of specific fragments extracted= 3 number of extra gaps= 3 total=28616 # 1hbnB.142.6 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :I 1hbnB 8 :V T0287 144 :LY 1hbnB 10 :LY T0287 147 :TNLP 1hbnB 13 :DRGN Number of specific fragments extracted= 3 number of extra gaps= 2 total=28619 # 1vh5A.142.117 read from T0287.t06.many.frag # found chain 1vh5A in training set Warning: unaligning (T0287)G146 (1vh5A)D120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1vh5A)K122 because G (3-10) conformation "forbidden" or filtered. T0287 142 :IELY 1vh5A 116 :IEIF T0287 147 :T 1vh5A 121 :E T0287 149 :LP 1vh5A 123 :GR Number of specific fragments extracted= 3 number of extra gaps= 2 total=28622 # 1se8A.142.105 read from T0287.t06.many.frag # found chain 1se8A in training set T0287 142 :IELYGTNLP 1se8A 106 :MEQLGTQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28623 # 1vgjA.142.77 read from T0287.t06.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)I78 Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1vgjA 79 :GVF T0287 147 :T 1vgjA 83 :N Number of specific fragments extracted= 2 number of extra gaps= 3 total=28625 # 1yn3A.142.7 read from T0287.t06.many.frag # found chain 1yn3A in training set T0287 142 :IELYGTNLP 1yn3A 164 :ITVNGTSQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28626 # 1xi1A.142.291 read from T0287.t06.many.frag # found chain 1xi1A in template set T0287 142 :IELYGTNLP 1xi1A 292 :FELKEGYIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28627 # 1ru3A.143.343 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :EL 1ru3A 344 :EF T0287 146 :GTNLPL 1ru3A 347 :GGKTPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28629 # 1xmkA.143.56 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYG 1xmkA 344 :YRQG T0287 150 :PL 1xmkA 351 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28631 # 1ok7A.143.42 read from T0287.t06.many.frag # found chain 1ok7A in training set T0287 143 :ELYGTNLPL 1ok7A 43 :SLTGTDLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28632 # 1bco.143.297 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNLPL 1bco 546 :CYTLDGRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28633 # 2c5qA.143.148 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 143 :ELYGTNLPL 2c5qA 149 :KAVGTNVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28634 # 1gd0A.143.47 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :EL 1gd0A 48 :AF T0287 146 :GTNLP 1gd0A 51 :GSSEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28636 # 1gttA.143.189 read from T0287.t06.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGT 1gttA 190 :RVLAE T0287 149 :LPL 1gttA 196 :FPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28638 # 1lpbA.143.27 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1lpbA 28 :CQHDTIL T0287 151 :L 1lpbA 36 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=28640 # 1v05A.143.41 read from T0287.t06.many.frag # found chain 1v05A in training set T0287 143 :ELYGTNLPL 1v05A 2671 :GVHGPKTPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28641 # 1jiwI.143.15 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1jiwI 16 :TLQQ T0287 148 :NLPL 1jiwI 21 :EAPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28643 # 1jiwI.143.68 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELY 1jiwI 69 :ALL T0287 147 :TN 1jiwI 73 :RG T0287 150 :PL 1jiwI 76 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=28646 # 2f15A.143.36 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 143 :ELY 2f15A 104 :PLI T0287 147 :T 2f15A 108 :S T0287 151 :L 2f15A 112 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=28649 # 2d0oA.143.482 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)N148 (2d0oA)P488 because P (beta_P) conformation "forbidden" or filtered. T0287 143 :ELYGT 2d0oA 483 :QFFST T0287 149 :LPL 2d0oA 489 :LPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28651 # 1acc.143.540 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1acc 542 :Y T0287 146 :GTNLPL 1acc 544 :GKDITE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28653 # 1ttuA.143.229 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1ttuA)A417 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1ttuA 418 :S T0287 147 :TNL 1ttuA 420 :TKW T0287 151 :L 1ttuA 424 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=28656 # 1k3sA.143.70 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)E143 (1k3sA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 1k3sA 72 :ADADNT T0287 151 :L 1k3sA 79 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=28658 # 1vgjA.143.78 read from T0287.t06.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1vgjA 79 :GVF T0287 147 :T 1vgjA 83 :N T0287 151 :L 1vgjA 87 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=28661 # 2evrA.143.177 read from T0287.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 2evrA 166 :VFFGTSQ T0287 151 :L 2evrA 174 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28663 # 1nqeA.143.550 read from T0287.t06.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)G146 (1nqeA)P554 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1nqeA)T556 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELY 1nqeA 551 :VAY T0287 147 :T 1nqeA 555 :V T0287 149 :LPL 1nqeA 557 :SHL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28666 # 1txvA.143.267 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1txvA 268 :EIL T0287 147 :TN 1txvA 272 :SY T0287 150 :PL 1txvA 275 :QR Number of specific fragments extracted= 3 number of extra gaps= 2 total=28669 # 1pjxA.143.249 read from T0287.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG T0287 149 :L 1pjxA 256 :G T0287 151 :L 1pjxA 258 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=28672 # 2fj8A.143.72 read from T0287.t06.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 T0287 143 :ELYGTN 2fj8A 73 :ICTRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28673 # 1hbnB.143.7 read from T0287.t06.many.frag # found chain 1hbnB in training set T0287 143 :ELYGTNLPL 1hbnB 9 :DLYDDRGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28674 # 1yn3A.143.8 read from T0287.t06.many.frag # found chain 1yn3A in training set Warning: unaligning (T0287)E143 (1yn3A)T165 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1yn3A)G168 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LY 1yn3A 166 :VN T0287 147 :TNLPL 1yn3A 169 :TSQNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28676 # 1ejfA.143.64 read from T0287.t06.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)E143 (1ejfA)K65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LY 1ejfA 66 :HK T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :L 1ejfA 73 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=28679 # 2f6eA.143.21 read from T0287.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0287 143 :ELYG 2f6eA 23 :FYFR T0287 148 :NLPL 2f6eA 28 :GLPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28681 # 1r5mA.143.132 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)L149 (1r5mA)G251 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1r5mA 245 :RLWNKT T0287 150 :PL 1r5mA 252 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28683 # 1cfb.143.111 read from T0287.t06.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)P150 (1cfb)N728 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1cfb 721 :VGQGTEP T0287 151 :L 1cfb 729 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=28685 # 1i0vA.143.77 read from T0287.t06.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1i0vA 78 :VVFNEN T0287 150 :PL 1i0vA 85 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28687 # 1tif.143.45 read from T0287.t06.many.frag # found chain 1tif in training set Warning: unaligning (T0287)G146 (1tif)A49 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1tif)K53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1tif)P54 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELY 1tif 46 :VLV T0287 147 :TNL 1tif 50 :PNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28689 # 1gttA.144.190 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 144 :LYGTNLPLL 1gttA 191 :VLAEGFPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28690 # 1xmkA.144.57 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 144 :LYG 1xmkA 345 :RQG T0287 150 :PLL 1xmkA 351 :PIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=28692 # 1ru3A.144.344 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNLPL 1ru3A 345 :FGGGKTPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28693 # 1gd0A.144.48 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNLP 1gd0A 49 :FGGSSEP T0287 152 :L 1gd0A 57 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28695 # 1lpbA.144.28 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1lpbA 29 :QHDTIL T0287 151 :LL 1lpbA 36 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28697 # 1v05A.144.42 read from T0287.t06.many.frag # found chain 1v05A in training set T0287 144 :LYGTNLPLL 1v05A 2672 :VHGPKTPCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28698 # 1jiwI.144.16 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1jiwI 17 :LQQ T0287 148 :NLPLL 1jiwI 21 :EAPAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28700 # 1k3sA.144.71 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGT 1k3sA 72 :ADAD T0287 149 :L 1k3sA 77 :T T0287 151 :LL 1k3sA 79 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28703 # 1ok7A.144.43 read from T0287.t06.many.frag # found chain 1ok7A in training set T0287 144 :LYGTNLPLL 1ok7A 44 :LTGTDLEME Number of specific fragments extracted= 1 number of extra gaps= 0 total=28704 # 1bco.144.298 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)N148 (1bco)D550 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LYGT 1bco 546 :CYTL T0287 149 :LPLL 1bco 551 :GRFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28706 # 1ttuA.144.230 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ttuA 417 :ASSTKW T0287 151 :LL 1ttuA 424 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28708 # 2c5qA.144.149 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 144 :LYGTNLPLL 2c5qA 150 :AVGTNVQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28709 # 1jiwI.144.69 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LY 1jiwI 70 :LL T0287 147 :TN 1jiwI 73 :RG T0287 150 :PLL 1jiwI 76 :LTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28712 # 1acc.144.541 read from T0287.t06.many.frag # found chain 1acc in template set T0287 144 :LYGTNLPLL 1acc 542 :YQGKDITEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28713 # 2fj8A.144.73 read from T0287.t06.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 T0287 144 :LY 2fj8A 74 :CT T0287 147 :TN 2fj8A 77 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28715 # 1wnyA.144.68 read from T0287.t06.many.frag # found chain 1wnyA in template set T0287 144 :LYGTNLPLL 1wnyA 268 :LLGEGTPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28716 # 2f15A.144.37 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 144 :LY 2f15A 105 :LI T0287 147 :T 2f15A 108 :S T0287 151 :LL 2f15A 112 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28719 # 2d0oA.144.483 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)N148 (2d0oA)P488 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LYGT 2d0oA 484 :FFST T0287 149 :LPLL 2d0oA 489 :LPPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28721 # 1nh1A.144.167 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 144 :LYGTNLPLL 1nh1A 168 :LHGNVIPLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28722 # 2evrA.144.178 read from T0287.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 2evrA 167 :FFGTSQ T0287 151 :LL 2evrA 174 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28724 # 2jdxA.144.30 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)G146 (2jdxA)N70 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LY 2jdxA 68 :SY T0287 147 :TNLPLL 2jdxA 71 :EWDPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28726 # 1txvA.144.268 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 1txvA 269 :IL T0287 147 :TN 1txvA 272 :SY T0287 150 :PLL 1txvA 275 :QRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28729 # 1dmgA.144.167 read from T0287.t06.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N148 (1dmgA)N173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1dmgA)D176 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGT 1dmgA 169 :LSGR T0287 149 :LP 1dmgA 174 :LP T0287 152 :L 1dmgA 177 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=28732 # 1i0vA.144.78 read from T0287.t06.many.frag # found chain 1i0vA in training set T0287 144 :LYGTNLPLL 1i0vA 79 :VFNENNQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28733 # 1ejfA.144.65 read from T0287.t06.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ejfA 66 :HKRTDR T0287 151 :LL 1ejfA 73 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28735 # 2f6eA.144.22 read from T0287.t06.many.frag # found chain 2f6eA in template set T0287 144 :LYGTNLPLL 2f6eA 24 :YFRNGLPQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28736 # 1pjxA.144.250 read from T0287.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1pjxA 251 :VFG T0287 149 :L 1pjxA 256 :G T0287 151 :LL 1pjxA 258 :QP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28739 # 1h4aX.144.155 read from T0287.t06.many.frag # found chain 1h4aX in training set Warning: unaligning (T0287)Y145 (1h4aX)G158 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1h4aX)A159 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :L 1h4aX 157 :W T0287 147 :TNLPLL 1h4aX 160 :TNARVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28741 # 1yn3A.144.9 read from T0287.t06.many.frag # found chain 1yn3A in training set T0287 144 :LYGTNLPLL 1yn3A 166 :VNGTSQNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28742 # 1r5mA.144.133 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)G146 (1r5mA)N248 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1r5mA 246 :LW T0287 147 :TNLPLL 1r5mA 249 :KTGALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28744 # 1gttA.145.191 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 145 :YGTNLPLLK 1gttA 192 :LAEGFPPLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28745 # 1k3sA.145.72 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1k3sA 73 :DADNT T0287 151 :LLK 1k3sA 79 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28747 # 1xmkA.145.58 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 145 :YG 1xmkA 346 :QG T0287 150 :PLLK 1xmkA 351 :PIWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28749 # 1ru3A.145.345 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :K 1ru3A 354 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=28751 # 1gd0A.145.49 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :LK 1gd0A 57 :AL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28753 # 1lpbA.145.29 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1lpbA 30 :HDTIL T0287 151 :LLK 1lpbA 36 :LSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28755 # 1nh1A.145.168 read from T0287.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)N148 (1nh1A)V172 because P (beta_P) conformation "forbidden" or filtered. T0287 145 :YGT 1nh1A 169 :HGN T0287 149 :LPLLK 1nh1A 173 :IPLNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28757 # 1jiwI.145.17 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 145 :YGTNLPLLK 1jiwI 18 :QQDEAPAIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28758 # 1wnyA.145.69 read from T0287.t06.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)G146 (1wnyA)G270 because S (epsilon) conformation "forbidden" or filtered. T0287 145 :Y 1wnyA 269 :L T0287 147 :TNLPLLK 1wnyA 271 :EGTPVLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28760 # 1jiwI.145.70 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)N148 (1jiwI)G74 because G (3-10) conformation "forbidden" or filtered. T0287 145 :YGT 1jiwI 71 :LER T0287 149 :LPLLK 1jiwI 75 :GLTLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28762 # 1bco.145.299 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTN 1bco 547 :YTLD T0287 150 :PLL 1bco 552 :RFI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28764 # 1v05A.145.43 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)N148 (1v05A)K2676 because G (3-10) conformation "forbidden" or filtered. T0287 145 :YGT 1v05A 2673 :HGP T0287 149 :LPLLK 1v05A 2677 :TPCEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28766 # 2fj8A.145.74 read from T0287.t06.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 145 :Y 2fj8A 75 :T T0287 147 :TN 2fj8A 77 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28768 # 2jdxA.145.31 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)G146 (2jdxA)N70 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 2jdxA 69 :Y T0287 147 :TNLPLLK 2jdxA 71 :EWDPLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28770 # 1ttuA.145.231 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1ttuA 418 :SSTKW T0287 151 :LLK 1ttuA 424 :AFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28772 # 2f15A.145.38 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 145 :YGT 2f15A 106 :IKS T0287 151 :LLK 2f15A 112 :FVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28774 # 1tul.145.75 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 145 :YGT 1tul 76 :VQN T0287 151 :LLK 1tul 82 :DLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28776 # 1ow1A.145.147 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 145 :YGTNLPLLK 1ow1A 3617 :PGSNQPAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28777 # 1gsa.145.214 read from T0287.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)N148 (1gsa)P218 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gsa)L223 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGT 1gsa 215 :DGE T0287 149 :LPLL 1gsa 219 :VPYC Number of specific fragments extracted= 2 number of extra gaps= 2 total=28779 # 1t6aA.145.61 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLP 1t6aA 61 :DGRLYK T0287 153 :K 1t6aA 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28781 # 1acc.145.542 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1acc 544 :GKDITEFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28782 # 1ok7A.145.44 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 1ok7A 45 :T T0287 147 :TN 1ok7A 47 :TD T0287 150 :P 1ok7A 50 :E T0287 152 :LK 1ok7A 52 :EM Number of specific fragments extracted= 4 number of extra gaps= 3 total=28786 # 1cfb.145.133 read from T0287.t06.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)Y145 (1cfb)N743 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1cfb)A744 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1cfb)H748 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1cfb)Y750 because D (zeta) conformation "forbidden" or filtered. T0287 147 :TNL 1cfb 745 :PNF T0287 151 :L 1cfb 749 :Y T0287 153 :K 1cfb 751 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=28789 # 1txvA.145.269 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 145 :YGTN 1txvA 270 :LDSY T0287 150 :PLLK 1txvA 275 :QRLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28791 # 1i0vA.145.79 read from T0287.t06.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1i0vA)G88 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTN 1i0vA 80 :FNEN T0287 150 :PLL 1i0vA 85 :QLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28793 # 1l9vA.145.179 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)G146 (1l9vA)D181 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1l9vA)N183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1l9vA 180 :L T0287 147 :T 1l9vA 182 :Q T0287 149 :L 1l9vA 184 :F T0287 151 :LLK 1l9vA 186 :EYK Number of specific fragments extracted= 4 number of extra gaps= 3 total=28797 # 1ejfA.145.66 read from T0287.t06.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1ejfA 67 :KRTDR T0287 151 :LLK 1ejfA 73 :ILC Number of specific fragments extracted= 2 number of extra gaps= 1 total=28799 # 1yq2A.145.936 read from T0287.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1yq2A)A938 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :Y 1yq2A 936 :D T0287 149 :LPLLK 1yq2A 940 :APWLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28801 # 2biqA.145.151 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)Y145 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2biqA)G245 Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2biqA)T253 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 149 :LPLL 2biqA 249 :SPIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28803 # 2evrA.145.179 read from T0287.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 2evrA 168 :FGTSQ T0287 151 :LLK 2evrA 174 :ATH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28805 # 1k3sA.146.73 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GT 1k3sA 74 :AD T0287 149 :L 1k3sA 77 :T T0287 151 :LLKL 1k3sA 79 :LVAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28808 # 1gttA.146.192 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 146 :GTNLPLLKL 1gttA 193 :AEGFPPLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28809 # 1l9vA.146.180 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)G146 (1l9vA)D181 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKL 1l9vA 186 :EYKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=28811 # 1xmkA.146.59 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1xmkA)H354 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :G 1xmkA 347 :G T0287 150 :PLL 1xmkA 351 :PIW T0287 154 :L 1xmkA 355 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28814 # 1gd0A.146.50 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :LKL 1gd0A 57 :ALC Number of specific fragments extracted= 2 number of extra gaps= 1 total=28816 # 1ru3A.146.346 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1ru3A)L355 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :K 1ru3A 354 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=28818 # 1ow1A.146.148 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 146 :GTNLPLLKL 1ow1A 3618 :GSNQPAYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28819 # 1kjlA.146.34 read from T0287.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)G146 (1kjlA)K139 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :TNLPLLKL 1kjlA 140 :PNANRIAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28820 # 2b8mA.146.87 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N87 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=28821 # 1lpbA.146.30 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1lpbA 31 :DTIL T0287 151 :LLKL 1lpbA 36 :LSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=28823 # 2biqA.146.152 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 148 :NLPLLKL 2biqA 248 :RSPILTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28825 # 1k8wA.146.298 read from T0287.t06.many.frag # found chain 1k8wA in template set T0287 146 :GTNLPLLKL 1k8wA 286 :GENGKFIGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28826 # 1nh1A.146.169 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 146 :GTNLPLLKL 1nh1A 170 :GNVIPLNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28827 # 1gsa.146.215 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 146 :GTNLPLLKL 1gsa 216 :GEPVPYCLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28828 # 1jiwI.146.71 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 146 :GTN 1jiwI 72 :ERG T0287 150 :PLLKL 1jiwI 76 :LTLML Number of specific fragments extracted= 2 number of extra gaps= 1 total=28830 # 1jiwI.146.18 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 148 :NLPLLKL 1jiwI 21 :EAPAICH Number of specific fragments extracted= 1 number of extra gaps= 1 total=28831 # 1ospO.146.74 read from T0287.t06.many.frag # found chain 1ospO in template set T0287 146 :GTNLPLLKL 1ospO 91 :SDDLGQTTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28832 # 1uv4A.146.30 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)N148 (1uv4A)E33 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1uv4A 31 :LT T0287 149 :LPLLKL 1uv4A 34 :ERGLRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28834 # 1bco.146.300 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPLL 1bco 549 :LDGRFI T0287 154 :L 1bco 556 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=28836 # 1tul.146.76 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1tul 77 :QN T0287 151 :LLKL 1tul 82 :DLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28838 # 1o59A.146.118 read from T0287.t06.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 146 :GTNLPL 1o59A 107 :GNHAPF T0287 154 :L 1o59A 115 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28840 # 1yq2A.146.937 read from T0287.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1yq2A)A938 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKL 1yq2A 940 :APWLRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28841 # 2fj8A.146.75 read from T0287.t06.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 147 :TN 2fj8A 77 :SN T0287 154 :L 2fj8A 84 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=28843 # 1t6aA.146.62 read from T0287.t06.many.frag # found chain 1t6aA in template set T0287 146 :GTNLPLLKL 1t6aA 62 :GRLYKGMAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28844 # 1wnyA.146.70 read from T0287.t06.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)G146 (1wnyA)G270 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1wnyA)K277 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPLL 1wnyA 271 :EGTPVL T0287 154 :L 1wnyA 278 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=28846 # 1jl0A.146.233 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 146 :GTNLPLLKL 1jl0A 234 :KSDGTYWTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28847 # 1txvA.146.270 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TN 1txvA 272 :SY T0287 150 :PLL 1txvA 275 :QRL T0287 154 :L 1txvA 279 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=28850 # 1p90A.146.23 read from T0287.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1p90A 122 :FGSCL T0287 152 :LKL 1p90A 128 :FLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28852 # 1ejfA.146.67 read from T0287.t06.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1ejfA 68 :RTDR T0287 151 :LLKL 1ejfA 73 :ILCC Number of specific fragments extracted= 2 number of extra gaps= 1 total=28854 # 1v4pA.146.96 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)G146 (1v4pA)P97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKL 1v4pA 102 :ILKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=28856 # 1gttA.147.193 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 147 :TNLPLLKLF 1gttA 194 :EGFPPLENP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28857 # 2b8mA.147.88 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=28858 # 1nh1A.147.170 read from T0287.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)N148 (1nh1A)V172 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :T 1nh1A 171 :N T0287 149 :LPLLKLF 1nh1A 173 :IPLNTFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28860 # 1l9vA.147.181 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKLF 1l9vA 186 :EYKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28862 # 2biqA.147.153 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. T0287 148 :NLPLLKLF 2biqA 248 :RSPILTII Number of specific fragments extracted= 1 number of extra gaps= 1 total=28863 # 1k3sA.147.74 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 1k3sA 75 :DNT T0287 151 :LLK 1k3sA 79 :LVA T0287 155 :F 1k3sA 83 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=28866 # 1ow1A.147.149 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 147 :TNLPLLKLF 1ow1A 3619 :SNQPAYVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28867 # 1uv4A.147.31 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 147 :TNLP 1uv4A 32 :TEER T0287 152 :LKLF 1uv4A 37 :LRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28869 # 1k8wA.147.299 read from T0287.t06.many.frag # found chain 1k8wA in template set T0287 147 :TNLPLLKLF 1k8wA 287 :ENGKFIGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28870 # 1kjlA.147.35 read from T0287.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1kjlA 140 :PNAN T0287 152 :LKLF 1kjlA 145 :IALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28872 # 1v4pA.147.97 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKLF 1v4pA 102 :ILKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28874 # 1ospO.147.75 read from T0287.t06.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)K153 (1ospO)T98 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPLL 1ospO 92 :DDLGQT T0287 154 :LF 1ospO 99 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28876 # 1jl0A.147.234 read from T0287.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)K153 (1jl0A)T241 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPLL 1jl0A 235 :SDGTYW T0287 154 :LF 1jl0A 242 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28878 # 2czrA.147.66 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2czrA)G63 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 2czrA 59 :KDV T0287 152 :LKLF 2czrA 64 :IHIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28880 # 1gsa.147.216 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 147 :TNLPLLKLF 1gsa 217 :EPVPYCLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28881 # 1fjgP.147.11 read from T0287.t06.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)N148 (1fjgP)H13 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1fjgP 12 :K T0287 149 :LPLLKLF 1fjgP 14 :NPHYRIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28883 # 1jiwI.147.19 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 148 :NLPLLKLF 1jiwI 21 :EAPAICHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28884 # 1gd0A.147.51 read from T0287.t06.many.frag # found chain 1gd0A in training set T0287 147 :TNLPLLKLF 1gd0A 52 :SSEPCALCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28885 # 1t6aA.147.63 read from T0287.t06.many.frag # found chain 1t6aA in template set T0287 147 :TNLPLLKLF 1t6aA 63 :RLYKGMAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28886 # 1cid.147.123 read from T0287.t06.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 T0287 147 :TNL 1cid 124 :PTS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28888 # 1y12A.147.79 read from T0287.t06.many.frag # found chain 1y12A in template set T0287 147 :TNLPLLKLF 1y12A 77 :KHYPQAKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28889 # 1tul.147.77 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 147 :T 1tul 78 :N T0287 151 :LLKLF 1tul 82 :DLNAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28891 # 1o59A.147.119 read from T0287.t06.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 147 :TNLPL 1o59A 108 :NHAPF T0287 154 :LF 1o59A 115 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28893 # 2a2cA.147.421 read from T0287.t06.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2a2cA)G403 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2a2cA)G406 because S (epsilon) conformation "forbidden" or filtered. T0287 150 :P 2a2cA 405 :G T0287 152 :LKLF 2a2cA 407 :CTVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28895 # 2a8eA.147.164 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 2a8eA 165 :KKA T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :F 2a8eA 173 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=28898 # 1p90A.147.24 read from T0287.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1p90A 123 :GSCL T0287 152 :LKLF 1p90A 128 :FLVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28900 # 1ysqA.147.141 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)N148 (1ysqA)R141 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :T 1ysqA 140 :G T0287 149 :LPL 1ysqA 142 :VPY T0287 153 :KLF 1ysqA 146 :VSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=28903 # 1i4wA.147.248 read from T0287.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0287)N148 (1i4wA)K238 because L (left) conformation "forbidden" or filtered. T0287 147 :T 1i4wA 237 :T T0287 149 :LPLLKLF 1i4wA 239 :GKPIALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28905 # 1ru3A.147.347 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPL 1ru3A 348 :GKTPS T0287 153 :KLF 1ru3A 354 :ELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28907 # 1yq2A.147.938 read from T0287.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1yq2A 938 :A T0287 149 :LPLLKLF 1yq2A 940 :APWLRID Number of specific fragments extracted= 2 number of extra gaps= 1 total=28909 # 2b8mA.148.89 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :V 2b8mA 97 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=28911 # 1nh1A.148.171 read from T0287.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)N148 (1nh1A)V172 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1nh1A 173 :IPLNTFRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28912 # 1gttA.148.194 read from T0287.t06.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1gttA 196 :FPPLENPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28913 # 1l9vA.148.182 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N148 (1l9vA)N183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFV 1l9vA 186 :EYKVTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28915 # 2biqA.148.154 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 148 :NLPLLKLFV 2biqA 248 :RSPILTIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28916 # 1uv4A.148.32 read from T0287.t06.many.frag # found chain 1uv4A in training set T0287 148 :NLPLLKLFV 1uv4A 33 :EERGLRVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28917 # 1ow1A.148.150 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 148 :NLPLLKLFV 1ow1A 3620 :NQPAYVLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28918 # 1jl0A.148.235 read from T0287.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 148 :N 1jl0A 236 :D T0287 150 :PLLKLFV 1jl0A 238 :TYWTIAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28920 # 1k8wA.148.300 read from T0287.t06.many.frag # found chain 1k8wA in template set T0287 148 :NLPLLKLFV 1k8wA 288 :NGKFIGMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28921 # 2a2cA.148.422 read from T0287.t06.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)P150 (2a2cA)G405 because S (epsilon) conformation "forbidden" or filtered. T0287 149 :L 2a2cA 404 :W T0287 151 :LLKLFV 2a2cA 406 :GCTVSM Number of specific fragments extracted= 2 number of extra gaps= 2 total=28923 # 1gsa.148.217 read from T0287.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)N148 (1gsa)P218 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1gsa 219 :VPYCLARI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28924 # 1k3sA.148.75 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NL 1k3sA 76 :NT T0287 151 :LLKLFV 1k3sA 79 :LVALYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28926 # 1kjlA.148.36 read from T0287.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLP 1kjlA 141 :NAN T0287 152 :LKLFV 1kjlA 145 :IALDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28928 # 1fjgP.148.12 read from T0287.t06.many.frag # found chain 1fjgP in template set T0287 148 :NLPLLKLFV 1fjgP 13 :HNPHYRIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28929 # 1vr8A.148.56 read from T0287.t06.many.frag # found chain 1vr8A in training set T0287 148 :NLPLLKLFV 1vr8A 69 :EYGPVFLYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28930 # 1v4pA.148.98 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 148 :NL 1v4pA 99 :DV T0287 151 :LLKLFV 1v4pA 102 :ILKVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28932 # 1cid.148.124 read from T0287.t06.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 T0287 148 :NL 1cid 125 :TS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28934 # 1tul.148.78 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1tul 82 :DLNAIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=28935 # 2btiA.148.27 read from T0287.t06.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)L149 (2btiA)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 148 :N 2btiA 26 :K T0287 151 :LLKLFV 2btiA 29 :QVRIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28937 # 1i4wA.148.249 read from T0287.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0287)N148 (1i4wA)K238 because L (left) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1i4wA 239 :GKPIALVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28938 # 2czrA.148.67 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)N148 (2czrA)D60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. T0287 149 :L 2czrA 61 :V T0287 151 :LLKLFV 2czrA 63 :GIHIVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28940 # 1ospO.148.76 read from T0287.t06.many.frag # found chain 1ospO in template set T0287 148 :NLPLLKLFV 1ospO 93 :DLGQTTLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28941 # 1gd0A.148.52 read from T0287.t06.many.frag # found chain 1gd0A in training set T0287 148 :NLPLLKLFV 1gd0A 53 :SEPCALCSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28942 # 1y12A.148.80 read from T0287.t06.many.frag # found chain 1y12A in template set Warning: unaligning (T0287)N148 (1y12A)H78 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1y12A 79 :YPQAKLTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28943 # 2a8eA.148.165 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)N148 (2a8eA)K166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 2a8eA 167 :A T0287 151 :LLKLFV 2a8eA 169 :LLCGIQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=28945 # 1f8eA.148.105 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)N148 (1f8eA)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1f8eA)T188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1f8eA)S191 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1f8eA 187 :K T0287 151 :LL 1f8eA 189 :RM T0287 154 :LFV 1f8eA 192 :ICI Number of specific fragments extracted= 3 number of extra gaps= 3 total=28948 # 1jiwI.148.20 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 148 :NLPLLKLFV 1jiwI 21 :EAPAICHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28949 # 1sqwA.148.136 read from T0287.t06.many.frag # found chain 1sqwA in template set Warning: unaligning (T0287)L149 (1sqwA)D138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1sqwA)G142 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :N 1sqwA 137 :A T0287 150 :PLL 1sqwA 139 :IPL T0287 154 :LFV 1sqwA 143 :FGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28952 # 1vs0A.148.209 read from T0287.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F155 (1vs0A)G666 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKL 1vs0A 663 :LLM T0287 156 :V 1vs0A 667 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28954 # 1ysqA.148.142 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ysqA)V146 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLPL 1ysqA 141 :RVPY T0287 154 :LFV 1ysqA 147 :SIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28956 # 1nh1A.149.172 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 149 :LPLLKLFVM 1nh1A 173 :IPLNTFRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28957 # 1l9vA.149.183 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFVM 1l9vA 186 :EYKVTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28959 # 2b8mA.149.90 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :VM 2b8mA 97 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28961 # 1uv4A.149.33 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1uv4A 34 :ERGLRVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28962 # 2biqA.149.155 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 149 :LPLLKLFVM 2biqA 249 :SPILTIITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28963 # 1vr8A.149.57 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)P150 (1vr8A)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 149 :L 1vr8A 70 :Y T0287 151 :LLKLFVM 1vr8A 72 :PVFLYVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28965 # 1ow1A.149.151 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 149 :LPLLKLFVM 1ow1A 3621 :QPAYVLQIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28966 # 1k3sA.149.76 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1k3sA 77 :T T0287 151 :LLKLFVM 1k3sA 79 :LVALYRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28968 # 1jl0A.149.236 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 149 :LPLLKLFVM 1jl0A 237 :GTYWTIAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28969 # 1fjgP.149.13 read from T0287.t06.many.frag # found chain 1fjgP in template set T0287 149 :LPLLKLFVM 1fjgP 14 :NPHYRIVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28970 # 1gsa.149.218 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 149 :LPLLKLFVM 1gsa 219 :VPYCLARIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28971 # 1gttA.149.195 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 149 :LPLLKLFVM 1gttA 196 :FPPLENPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28972 # 2a8eA.149.166 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 2a8eA 167 :A T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVM 2a8eA 173 :IQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28975 # 1no5A.149.43 read from T0287.t06.many.frag # found chain 1no5A in training set T0287 149 :LPLLKLFVM 1no5A 44 :YSDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=28976 # 1v4pA.149.99 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 1v4pA 100 :V T0287 151 :LLKLFVM 1v4pA 102 :ILKVVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28978 # 2btiA.149.28 read from T0287.t06.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 2btiA 27 :G T0287 151 :LLKLFVM 2btiA 29 :QVRIGVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28980 # 1p90A.149.26 read from T0287.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)K153 (1p90A)L129 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLL 1p90A 125 :CLRF T0287 154 :LFVM 1p90A 130 :VYQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28982 # 1jiwI.149.21 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 149 :LPLLKLFVM 1jiwI 22 :APAICHLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28983 # 1tul.149.79 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1tul)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1tul 82 :DL T0287 154 :LFVM 1tul 85 :AIMF Number of specific fragments extracted= 2 number of extra gaps= 2 total=28985 # 1i4wA.149.250 read from T0287.t06.many.frag # found chain 1i4wA in template set T0287 149 :LPLLKLFVM 1i4wA 239 :GKPIALVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28986 # 1k8wA.149.301 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1k8wA)I297 because P (beta_P) conformation "forbidden" or filtered. T0287 150 :PLLKLFV 1k8wA 290 :KFIGMGE Number of specific fragments extracted= 1 number of extra gaps= 2 total=28987 # 2a2cA.149.423 read from T0287.t06.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2a2cA)G405 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2a2cA)G406 because S (epsilon) conformation "forbidden" or filtered. T0287 152 :LKLFVM 2a2cA 407 :CTVSMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28988 # 1vl7A.149.75 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 149 :LPLLKLFVM 1vl7A 64 :NPLVNVLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28989 # 1cid.149.125 read from T0287.t06.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)K153 (1cid)R130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K134 T0287 149 :L 1cid 126 :S T0287 154 :LF 1cid 131 :LI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28991 # 1vs0A.149.210 read from T0287.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVM 1vs0A 663 :LLMGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28992 # 1ftrA.149.69 read from T0287.t06.many.frag # found chain 1ftrA in training set T0287 149 :LPLLKLFVM 1ftrA 70 :RPGVTIMIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28993 # 1ry9A.149.107 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1ry9A 96 :E T0287 151 :LLKLFVM 1ry9A 98 :LQLRVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28995 # 1k2xA.149.77 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1k2xA 79 :T T0287 151 :LLKLFVM 1k2xA 81 :ELDACVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28997 # 1kjlA.149.37 read from T0287.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1kjlA 142 :AN T0287 152 :LKLFVM 1kjlA 145 :IALDFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28999 # 1vqoS.149.59 read from T0287.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0287)P150 (1vqoS)G60 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :L 1vqoS 59 :D T0287 151 :LLKLFVM 1vqoS 61 :EKKAVVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29001 # 1nh1A.150.173 read from T0287.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)T158 (1nh1A)T182 because G (3-10) conformation "forbidden" or filtered. T0287 150 :PLLKLFVM 1nh1A 174 :PLNTFRVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29002 # 1l9vA.150.184 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1l9vA 186 :EYKVTLNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29003 # 2biqA.150.156 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 150 :PLLKLFVMT 2biqA 250 :PILTIITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29004 # 1uv4A.150.34 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 150 :P 1uv4A 35 :R T0287 152 :LKLFVMT 1uv4A 37 :LRVLKSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29006 # 1vr8A.150.58 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)P150 (1vr8A)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1vr8A)F74 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LL 1vr8A 72 :PV T0287 154 :LFVMT 1vr8A 75 :LYVYK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29008 # 2b8mA.150.91 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 150 :PLLK 2b8mA 91 :DILE T0287 156 :VMT 2b8mA 97 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29010 # 1k3sA.150.77 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1k3sA 79 :LVALYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=29011 # 1ry9A.150.108 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ry9A)L100 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1ry9A 98 :LQ T0287 154 :LFVMT 1ry9A 101 :RVVIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29013 # 2a8eA.150.167 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVMT 2a8eA 173 :IQLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=29015 # 1ow1A.150.152 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 150 :PLLKLFVMT 1ow1A 3622 :PAYVLQIFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29016 # 1fjgP.150.14 read from T0287.t06.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLLKLFV 1fjgP 15 :PHYRIVV T0287 158 :T 1fjgP 23 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=29018 # 1gsa.150.219 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 150 :PLLKLFVMT 1gsa 220 :PYCLARIPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29019 # 1no5A.150.44 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)K153 (1no5A)D48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 T0287 150 :PLL 1no5A 45 :SDL T0287 154 :LFVM 1no5A 49 :LAII Number of specific fragments extracted= 2 number of extra gaps= 2 total=29021 # 1p90A.150.27 read from T0287.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1p90A 126 :L T0287 152 :LKLFVMT 1p90A 128 :FLVYQVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29023 # 1vl7A.150.76 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 150 :PLLKLFVMT 1vl7A 65 :PLVNVLFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29024 # 1g60A.150.115 read from T0287.t06.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1g60A)Q116 T0287 151 :LLKLFVMT 1g60A 117 :ETILFFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29025 # 1v4pA.150.100 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1v4pA 102 :ILKVVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29026 # 1jl0A.150.237 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 150 :PLLKLFVMT 1jl0A 238 :TYWTIAITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29027 # 1k8wA.150.302 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LFVMT 1k8wA 294 :MGEID Number of specific fragments extracted= 2 number of extra gaps= 1 total=29029 # 1ftrA.150.70 read from T0287.t06.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1ftrA 71 :P T0287 152 :LKLFVMT 1ftrA 73 :VTIMIGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29031 # 1jiwI.150.22 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 150 :PLLKLFVMT 1jiwI 23 :PAICHLELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29032 # 1t6aA.150.66 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PL 1t6aA 66 :KG T0287 153 :KLFVMT 1t6aA 69 :AISVRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29034 # 1vs0A.150.211 read from T0287.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1vs0A)P668 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :LKLFV 1vs0A 663 :LLMGI T0287 158 :T 1vs0A 669 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=29036 # 2btiA.150.29 read from T0287.t06.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2btiA 29 :QVRIGVNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29037 # 1k2xA.150.78 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1k2xA 81 :ELDACVMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29038 # 1wvhA.150.107 read from T0287.t06.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)P150 (1wvhA)N1712 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1wvhA 1713 :VCHLFAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29039 # 1w0pA.150.712 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)P150 (1w0pA)Q713 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1w0pA)N714 because L (left) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1w0pA 715 :LGLWFSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=29040 # 2jdxA.150.36 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)K153 (2jdxA)E77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2jdxA)V78 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLL 2jdxA 74 :PLE T0287 155 :FVMT 2jdxA 79 :IVGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29042 # 1ysqA.150.144 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PL 1ysqA 143 :PY T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :T 1ysqA 151 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=29045 # 1i4wA.150.251 read from T0287.t06.many.frag # found chain 1i4wA in template set T0287 150 :PLLKLFVMT 1i4wA 240 :KPIALVEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29046 # 1nh1A.151.174 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 151 :LLKLFVMTD 1nh1A 175 :LNTFRVATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29047 # 1l9vA.151.185 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 151 :LLKLFVMTD 1l9vA 186 :EYKVTLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=29048 # 2biqA.151.157 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 151 :LLKLFVMTD 2biqA 251 :ILTIITLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=29049 # 1ry9A.151.109 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ry9A 98 :LQLRVV T0287 158 :TD 1ry9A 105 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29051 # 1vr8A.151.59 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1vr8A 72 :PVFLYVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29052 # 1uv4A.151.35 read from T0287.t06.many.frag # found chain 1uv4A in training set T0287 151 :LLKLFVMTD 1uv4A 36 :GLRVLKSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29053 # 1vl7A.151.77 read from T0287.t06.many.frag # found chain 1vl7A in training set Warning: unaligning (T0287)K153 (1vl7A)N68 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1vl7A 66 :LV T0287 154 :LFVMTD 1vl7A 69 :VLFVDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29055 # 1no5A.151.45 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 T0287 151 :LLKLFVM 1no5A 46 :DLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29056 # 2a8eA.151.168 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVMTD 2a8eA 173 :IQLQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29058 # 1k3sA.151.78 read from T0287.t06.many.frag # found chain 1k3sA in template set T0287 151 :LLKLFVMTD 1k3sA 79 :LVALYRLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29059 # 1gsa.151.220 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 151 :LLKLFVMTD 1gsa 221 :YCLARIPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29060 # 2b8mA.151.92 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 151 :LLK 2b8mA 92 :ILE T0287 156 :VMTD 2b8mA 97 :VVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29062 # 1jl0A.151.238 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 151 :LLKLFVMTD 1jl0A 239 :YWTIAITPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29063 # 1fjgP.151.15 read from T0287.t06.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1fjgP 16 :HYRIVV T0287 158 :TD 1fjgP 23 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29065 # 1k8wA.151.303 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1k8wA)I297 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1k8wA 291 :FI T0287 154 :LFV 1k8wA 294 :MGE T0287 158 :TD 1k8wA 298 :DD Number of specific fragments extracted= 3 number of extra gaps= 2 total=29068 # 1ow1A.151.153 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 151 :LLKLFVMTD 1ow1A 3623 :AYVLQIFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29069 # 1wd6A.151.66 read from T0287.t06.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)L152 (1wd6A)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :L 1wd6A 50 :A T0287 154 :LFVMTD 1wd6A 53 :IYLFTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29071 # 1g60A.151.116 read from T0287.t06.many.frag # found chain 1g60A in training set T0287 151 :LLKLFVMTD 1g60A 117 :ETILFFSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29072 # 1p90A.151.28 read from T0287.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1p90A 128 :FLVYQVSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29073 # 1wvhA.151.108 read from T0287.t06.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)D159 (1wvhA)D1721 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1wvhA 1713 :VCHLFAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29074 # 1ysqA.151.145 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :L 1ysqA 144 :Y T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :TD 1ysqA 151 :ST Number of specific fragments extracted= 3 number of extra gaps= 2 total=29077 # 1k2xA.151.79 read from T0287.t06.many.frag # found chain 1k2xA in training set T0287 151 :LLKLFVMTD 1k2xA 81 :ELDACVMDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29078 # 1ifrA.151.19 read from T0287.t06.many.frag # found chain 1ifrA in training set Warning: unaligning (T0287)L151 (1ifrA)F451 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ifrA)R453 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ifrA)K457 because G (3-10) conformation "forbidden" or filtered. T0287 152 :L 1ifrA 452 :V T0287 154 :LFV 1ifrA 454 :LRN T0287 158 :TD 1ifrA 458 :SN Number of specific fragments extracted= 3 number of extra gaps= 3 total=29081 # 1ftrA.151.71 read from T0287.t06.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ftrA 73 :VTIMIGHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29082 # 1v4pA.151.101 read from T0287.t06.many.frag # found chain 1v4pA in training set T0287 151 :LLKLFVMTD 1v4pA 102 :ILKVVVIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=29083 # 2cxhA.151.98 read from T0287.t06.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2cxhA 79 :IIRVYAVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29084 # 1vetA.151.87 read from T0287.t06.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1vetA 88 :LVVSFI T0287 158 :TD 1vetA 95 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29086 # 1ikoP.151.48 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M157 (1ikoP)V84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ikoP 78 :YYKVYM T0287 158 :TD 1ikoP 85 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29088 # 2acaA.151.135 read from T0287.t06.many.frag # found chain 2acaA in template set Warning: unaligning (T0287)F155 (2acaA)A140 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKL 2acaA 136 :FAEF T0287 156 :VMTD 2acaA 141 :IMTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29090 # 1yu0A.151.107 read from T0287.t06.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 151 :LLKL 1yu0A 108 :DYAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29092 # 1l9vA.152.186 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)E160 (1l9vA)K195 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1l9vA 187 :YKVTLNED Number of specific fragments extracted= 1 number of extra gaps= 1 total=29093 # 1nh1A.152.175 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 152 :LKLFVMTDE 1nh1A 176 :NTFRVATDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29094 # 1no5A.152.46 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 T0287 152 :LKLFVM 1no5A 47 :LDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29095 # 1vl7A.152.78 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 152 :LKLFVMTDE 1vl7A 67 :VNVLFVDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29096 # 1ry9A.152.110 read from T0287.t06.many.frag # found chain 1ry9A in template set T0287 152 :LKLFVMTDE 1ry9A 99 :QLRVVIKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29097 # 1jl0A.152.239 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 152 :LKLFVMTDE 1jl0A 240 :WTIAITPEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29098 # 1vr8A.152.60 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1vr8A 73 :VFLYVYK T0287 160 :E 1vr8A 81 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29100 # 1uv4A.152.36 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1uv4A)A45 because L (left) conformation "forbidden" or filtered. T0287 152 :L 1uv4A 37 :L T0287 154 :LFV 1uv4A 39 :VLK T0287 158 :TD 1uv4A 43 :SD Number of specific fragments extracted= 3 number of extra gaps= 3 total=29103 # 1ifrA.152.20 read from T0287.t06.many.frag # found chain 1ifrA in training set Warning: unaligning (T0287)E160 (1ifrA)E460 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ifrA 452 :VRLRNKSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29104 # 1fjgP.152.16 read from T0287.t06.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1fjgP 17 :YRIVV T0287 158 :TDE 1fjgP 23 :DAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29106 # 2a8eA.152.169 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)K153 (2a8eA)C171 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 2a8eA 170 :L T0287 154 :LFVMTDE 2a8eA 172 :GIQLQKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29108 # 2biqA.152.158 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 152 :LKLFVMTDE 2biqA 252 :LTIITLEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29109 # 1wd6A.152.67 read from T0287.t06.many.frag # found chain 1wd6A in template set T0287 152 :LKLFVMTDE 1wd6A 51 :GGIYLFTDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29110 # 1wvhA.152.109 read from T0287.t06.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)K153 (1wvhA)H1715 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 1wvhA 1714 :C T0287 154 :LFVMTDE 1wvhA 1716 :LFAELDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29112 # 1gsa.152.221 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 152 :LKLFVMTDE 1gsa 222 :CLARIPQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29113 # 1k8wA.152.304 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :L 1k8wA 292 :I T0287 154 :LFVMTDE 1k8wA 294 :MGEIDDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29115 # 2c60A.152.67 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 T0287 152 :LKLFV 2c60A 81 :LDLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29117 # 1yu0A.152.108 read from T0287.t06.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 152 :LKL 1yu0A 109 :YAI T0287 157 :MTDE 1yu0A 114 :CDDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29119 # 2cy5A.152.94 read from T0287.t06.many.frag # found chain 2cy5A in template set T0287 152 :LKLFVMTDE 2cy5A 120 :LLLVCQEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29120 # 1vetA.152.88 read from T0287.t06.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1vetA 89 :VVSFI T0287 158 :TDE 1vetA 95 :SSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29122 # 1g60A.152.117 read from T0287.t06.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1g60A 118 :TILFFSK T0287 160 :E 1g60A 126 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=29124 # 1f8eA.152.109 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. T0287 152 :LKLFV 1f8eA 190 :MSICI T0287 159 :DE 1f8eA 197 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29126 # 1k2xA.152.80 read from T0287.t06.many.frag # found chain 1k2xA in training set T0287 152 :LKLFVMTDE 1k2xA 82 :LDACVMDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29127 # 1yb3A.152.83 read from T0287.t06.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1yb3A)F77 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1yb3A)F77 T0287 154 :LFVMTDE 1yb3A 78 :VFAFPKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29128 # 2cxhA.152.99 read from T0287.t06.many.frag # found chain 2cxhA in template set T0287 152 :LKLFVMTDE 2cxhA 80 :IRVYAVEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29129 # 1k3sA.152.79 read from T0287.t06.many.frag # found chain 1k3sA in template set T0287 152 :LKLFVMTDE 1k3sA 80 :VALYRLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29130 # 1dp4A.152.375 read from T0287.t06.many.frag # found chain 1dp4A in template set T0287 152 :LKLFVMTDE 1dp4A 376 :FSLWDMDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29131 # 1o4yA.152.118 read from T0287.t06.many.frag # found chain 1o4yA in training set T0287 152 :LKLFVMTDE 1o4yA 135 :NAFWTLTDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29132 # 1ysqA.152.146 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 1ysqA 146 :VSISLSTS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29133 # 1tvgA.152.81 read from T0287.t06.many.frag # found chain 1tvgA in training set T0287 152 :LKLFVMTDE 1tvgA 72 :LKIEKSTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29134 # 1no5A.153.47 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 T0287 153 :KLFVM 1no5A 48 :DLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29135 # 1ry9A.153.111 read from T0287.t06.many.frag # found chain 1ry9A in template set T0287 153 :KLFVMTDEE 1ry9A 100 :LRVVIKDDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29136 # 1jl0A.153.240 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 153 :KLFVMTDEE 1jl0A 241 :TIAITPEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29137 # 1l9vA.153.187 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 153 :KLFVMTDEE 1l9vA 188 :KVTLNEDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29138 # 1vl7A.153.79 read from T0287.t06.many.frag # found chain 1vl7A in training set Warning: unaligning (T0287)K153 (1vl7A)N68 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1vl7A 69 :VLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29139 # 2biqA.153.159 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)M157 (2biqA)L257 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFV 2biqA 253 :TIIT T0287 158 :TDEE 2biqA 258 :EDSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29141 # 1wd6A.153.68 read from T0287.t06.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1wd6A 53 :IYLFT T0287 160 :EE 1wd6A 59 :EK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29143 # 1g60A.153.118 read from T0287.t06.many.frag # found chain 1g60A in training set T0287 153 :KLFVMTDEE 1g60A 119 :ILFFSKSKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29144 # 2c60A.153.68 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 T0287 153 :KLFV 2c60A 82 :DLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29146 # 2czrA.153.72 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 153 :KLFVMTDEE 2czrA 65 :HIVAIPDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29147 # 2a8eA.153.170 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :K 2a8eA 171 :C T0287 155 :FVMTDEE 2a8eA 173 :IQLQKEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29149 # 1dp4A.153.376 read from T0287.t06.many.frag # found chain 1dp4A in template set T0287 153 :KLFVMTDEE 1dp4A 377 :SLWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=29150 # 1nh1A.153.176 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 153 :KLFVMTDEE 1nh1A 177 :TFRVATDTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29151 # 3sil.153.139 read from T0287.t06.many.frag # found chain 3sil in training set Warning: unaligning (T0287)E160 (3sil)D150 because L (left) conformation "forbidden" or filtered. T0287 153 :KLFVMTD 3sil 143 :VLYKSTD T0287 161 :E 3sil 151 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=29153 # 1o4yA.153.119 read from T0287.t06.many.frag # found chain 1o4yA in training set Warning: unaligning (T0287)E161 (1o4yA)E144 because L (left) conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 1o4yA 136 :AFWTLTDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29154 # 1h5rA.153.174 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 153 :KLFVMTDEE 1h5rA 175 :GLYFYDNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29155 # 1wvhA.153.110 read from T0287.t06.many.frag # found chain 1wvhA in template set T0287 153 :KLFVMTDEE 1wvhA 1715 :HLFAELDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29156 # 1vr8A.153.61 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1vr8A 74 :FLYVYK T0287 160 :EE 1vr8A 81 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29158 # 1ysqA.153.147 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :TDEE 1ysqA 151 :STSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29160 # 1k2xA.153.81 read from T0287.t06.many.frag # found chain 1k2xA in training set T0287 153 :KLFVMTDEE 1k2xA 83 :DACVMDGNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29161 # 1ftrA.153.73 read from T0287.t06.many.frag # found chain 1ftrA in training set T0287 153 :KLFVMTDEE 1ftrA 74 :TIMIGHNDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29162 # 1gsa.153.222 read from T0287.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1gsa)T232 T0287 153 :KLFVMT 1gsa 223 :LARIPQ T0287 160 :E 1gsa 230 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=29164 # 1fjgP.153.17 read from T0287.t06.many.frag # found chain 1fjgP in template set T0287 153 :KLFVMTDEE 1fjgP 18 :RIVVTDARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29165 # 1gycA.153.121 read from T0287.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)K153 (1gycA)G122 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1gycA 123 :PFVVYDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29166 # 1f8eA.153.110 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1f8eA 191 :SICI T0287 158 :TDEE 1f8eA 196 :GPNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29168 # 1yu0A.153.109 read from T0287.t06.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 Warning: unaligning (T0287)E160 (1yu0A)G117 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KL 1yu0A 110 :AI T0287 157 :MTD 1yu0A 114 :CDD T0287 161 :E 1yu0A 118 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=29171 # 2b4vA.153.79 read from T0287.t06.many.frag # found chain 2b4vA in template set T0287 153 :KLFVMTDEE 2b4vA 99 :DLACMFDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29172 # 1vetA.153.89 read from T0287.t06.many.frag # found chain 1vetA in template set T0287 153 :KLFVMTDEE 1vetA 90 :VSFIASSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29173 # 1k8wA.153.305 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1k8wA 294 :MGEIDDEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=29174 # 1yrkA.153.72 read from T0287.t06.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1yrkA 70 :QIVLMR T0287 160 :EE 1yrkA 77 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29176 # 1no5A.154.48 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)M157 (1no5A)I52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 T0287 154 :LFV 1no5A 49 :LAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29177 # 1zpvA.154.48 read from T0287.t06.many.frag # found chain 1zpvA in template set T0287 154 :LFVMTDEEV 1zpvA 46 :AVVSSDEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29178 # 2a8eA.154.171 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 2a8eA 173 :IQLQKEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29179 # 2biqA.154.160 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)V162 (2biqA)G262 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 2biqA 254 :IITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29180 # 1ry9A.154.112 read from T0287.t06.many.frag # found chain 1ry9A in template set T0287 154 :LFVMTDEEV 1ry9A 101 :RVVIKDDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29181 # 2c60A.154.69 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 154 :LFV 2c60A 83 :LHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29183 # 1g60A.154.119 read from T0287.t06.many.frag # found chain 1g60A in training set T0287 154 :LFVMTDEEV 1g60A 120 :LFFSKSKNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29184 # 1wd6A.154.69 read from T0287.t06.many.frag # found chain 1wd6A in template set T0287 154 :LFVMTDEEV 1wd6A 53 :IYLFTDEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29185 # 2czrA.154.73 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E160 (2czrA)N72 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFVMTD 2czrA 66 :IVAIPD T0287 161 :EV 2czrA 73 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29187 # 1o4yA.154.120 read from T0287.t06.many.frag # found chain 1o4yA in training set T0287 154 :LFVMTDEEV 1o4yA 137 :FWTLTDDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=29188 # 1yrkA.154.73 read from T0287.t06.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1yrkA)A77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1yrkA)E78 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMT 1yrkA 71 :IVLMR T0287 162 :V 1yrkA 79 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29190 # 1ysqA.154.148 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFV 1ysqA 147 :SIS T0287 158 :TDEEV 1ysqA 151 :STSRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29192 # 1gycA.154.122 read from T0287.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)D159 (1gycA)D128 because E (beta_S) conformation "forbidden" or filtered. T0287 154 :LFVMT 1gycA 123 :PFVVY T0287 160 :EEV 1gycA 129 :PKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29194 # 1f60B.154.58 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 154 :LFVMTDEEV 1f60B 1171 :NCVVEDDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29195 # 1h5rA.154.175 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 154 :LFVMTDEEV 1h5rA 176 :LYFYDNDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29196 # 1vr8A.154.62 read from T0287.t06.many.frag # found chain 1vr8A in training set T0287 154 :LFVMTDEEV 1vr8A 75 :LYVYKGEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29197 # 12asA.154.119 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 154 :LFVMTD 12asA 120 :ERVMGD T0287 161 :EV 12asA 127 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=29199 # 1gw5S.154.66 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 154 :LFVMTDEEV 1gw5S 67 :FCICVDVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=29200 # 1dp4A.154.377 read from T0287.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0287)V156 (1dp4A)D380 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LF 1dp4A 378 :LW T0287 157 :MTDEEV 1dp4A 381 :MDPETG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29202 # 2ajfE.154.63 read from T0287.t06.many.frag # found chain 2ajfE in template set T0287 154 :LFVMTDEEV 2ajfE 386 :SFVVKGDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29203 # 1k2xA.154.82 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1k2xA)L92 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 1 number of extra gaps= 2 total=29204 # 1cfzA.154.73 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)D159 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 154 :LFVMT 1cfzA 74 :MMILR T0287 160 :E 1cfzA 80 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=29206 # 1wnaA.154.90 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 154 :LFVMTDEEV 1wnaA 91 :EAVVSPGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29207 # 1vl7A.154.80 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 154 :LFVMTDEEV 1vl7A 69 :VLFVDDEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29208 # 1t9fA.154.158 read from T0287.t06.many.frag # found chain 1t9fA in template set Warning: unaligning (T0287)E161 (1t9fA)I185 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFVMTDE 1t9fA 178 :EVVGTDS T0287 162 :V 1t9fA 186 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=29210 # 1ftrA.154.74 read from T0287.t06.many.frag # found chain 1ftrA in training set T0287 154 :LFVMTDEEV 1ftrA 75 :IMIGHNDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=29211 # 1vr7A.154.90 read from T0287.t06.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 154 :LFVMT 1vr7A 79 :DLFTC T0287 162 :V 1vr7A 87 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29213 # 2a2cA.154.428 read from T0287.t06.many.frag # found chain 2a2cA in template set T0287 154 :LFVMTDEEV 2a2cA 409 :VSMVPADKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29214 # 1yj7A.154.125 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)D159 (1yj7A)S150 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFVMT 1yj7A 145 :VLVIS T0287 160 :EEV 1yj7A 151 :PEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29216 # 1jl0A.154.241 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 154 :LFVMTDEEV 1jl0A 242 :IAITPEPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29217 # 2a8eA.155.172 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 155 :FVMTDEEVN 2a8eA 173 :IQLQKEEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29218 # 1zpvA.155.49 read from T0287.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FV 1zpvA 47 :VV T0287 158 :TDEEVN 1zpvA 50 :SDEKQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29220 # 1no5A.155.49 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 T0287 155 :FVM 1no5A 50 :AII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29221 # 1cfzA.155.74 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)D159 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 155 :FVMT 1cfzA 75 :MILR T0287 160 :E 1cfzA 80 :E T0287 163 :N 1cfzA 83 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=29224 # 2c60A.155.70 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 155 :FV 2c60A 84 :HY T0287 159 :DE 2c60A 88 :NE T0287 163 :N 2c60A 92 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=29227 # 1xkpC.155.94 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 155 :FVMTDEEVN 1xkpC 95 :ARLRLQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29228 # 1wnaA.155.91 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 155 :FVMTDEEVN 1wnaA 92 :AVVSPGEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29229 # 2biqA.155.161 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)V162 (2biqA)G262 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 2biqA 255 :ITLEDSS T0287 163 :N 2biqA 263 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=29231 # 1yb3A.155.86 read from T0287.t06.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1yb3A 79 :FAFPKEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29232 # 1gw5S.155.67 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 155 :FVMTDEEVN 1gw5S 68 :CICVDVNDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29233 # 1h5rA.155.176 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 155 :FVMTDEEVN 1h5rA 177 :YFYDNDVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29234 # 1ysqA.155.149 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FV 1ysqA 148 :IS T0287 158 :TDEEVN 1ysqA 151 :STSRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29236 # 2b5iC.155.59 read from T0287.t06.many.frag # found chain 2b5iC in template set T0287 155 :FVMTDEEVN 2b5iC 93 :CQLQKKEIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29237 # 1ry9A.155.113 read from T0287.t06.many.frag # found chain 1ry9A in template set T0287 155 :FVMTDEEVN 1ry9A 102 :VVIKDDYVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29238 # 1f60B.155.59 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 155 :FVMTDEEVN 1f60B 1172 :CVVEDDKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29239 # 1g60A.155.120 read from T0287.t06.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1g60A 121 :FFSK T0287 160 :EEVN 1g60A 126 :KNHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29241 # 1vr8A.155.63 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1vr8A 76 :YVYK T0287 160 :EEVN 1vr8A 81 :EEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29243 # 12asA.155.120 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 12asA 121 :RVMGDGER Number of specific fragments extracted= 1 number of extra gaps= 1 total=29244 # 1t6aA.155.71 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. T0287 155 :FVMTD 1t6aA 71 :SVRTA T0287 161 :EVN 1t6aA 77 :EET Number of specific fragments extracted= 2 number of extra gaps= 1 total=29246 # 1yj7A.155.126 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 155 :FVMTDEEVN 1yj7A 146 :LVISSPEVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29247 # 1wd6A.155.70 read from T0287.t06.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1wd6A 54 :YLFT T0287 160 :EEVN 1wd6A 59 :EKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29249 # 1gycA.155.123 read from T0287.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)D159 (1gycA)D128 because E (beta_S) conformation "forbidden" or filtered. T0287 155 :FVMT 1gycA 124 :FVVY T0287 160 :EEVN 1gycA 129 :PKDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29251 # 2a90A.155.27 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMTD 2a90A 49 :WEFES T0287 162 :VN 2a90A 56 :KW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29253 # 1uylA.155.186 read from T0287.t06.many.frag # found chain 1uylA in training set T0287 155 :FVMTDEEVN 1uylA 187 :ILHLKEDQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29254 # 2czrA.155.74 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 155 :FVMTDEEVN 2czrA 67 :VAIPDNGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29255 # 1pv5A.155.222 read from T0287.t06.many.frag # found chain 1pv5A in training set T0287 155 :FVMTDEEVN 1pv5A 220 :QIDSDDDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=29256 # 1ln1A.155.41 read from T0287.t06.many.frag # found chain 1ln1A in template set Warning: unaligning (T0287)N163 (1ln1A)G50 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1ln1A 42 :YRLLDKKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29257 # 1yrkA.155.74 read from T0287.t06.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1yrkA)E78 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMT 1yrkA 72 :VLMR T0287 160 :E 1yrkA 77 :A T0287 162 :VN 1yrkA 79 :EP Number of specific fragments extracted= 3 number of extra gaps= 2 total=29260 # 2ajfE.155.64 read from T0287.t06.many.frag # found chain 2ajfE in template set T0287 155 :FVMTDEEVN 2ajfE 387 :FVVKGDDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29261 # 1t9fA.155.159 read from T0287.t06.many.frag # found chain 1t9fA in template set T0287 155 :FVMTDEEVN 1t9fA 179 :VVGTDSITG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29262 # 1cfzA.156.75 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 156 :VMTDE 1cfzA 76 :ILRDE T0287 163 :NF 1cfzA 83 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29264 # 1zpvA.156.50 read from T0287.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1zpvA 48 :V T0287 158 :TDEEVNF 1zpvA 50 :SDEKQDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29266 # 1no5A.156.50 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 156 :VM 1no5A 51 :II Number of specific fragments extracted= 1 number of extra gaps= 1 total=29267 # 2a8eA.156.173 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)F164 (2a8eA)N182 because G (3-10) conformation "forbidden" or filtered. T0287 156 :VMTDEEVN 2a8eA 174 :QLQKEEVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29268 # 2c60A.156.71 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 156 :V 2c60A 85 :Y T0287 159 :DE 2c60A 88 :NE T0287 163 :NF 2c60A 92 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29271 # 1wnaA.156.92 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 156 :VMTDEEVNF 1wnaA 93 :VVSPGEMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29272 # 1h5rA.156.177 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 156 :VMTDEEVNF 1h5rA 178 :FYDNDVVQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29273 # 12asA.156.121 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTD 12asA 122 :VMGD T0287 161 :EV 12asA 127 :ER T0287 164 :F 12asA 130 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=29276 # 1xkpC.156.95 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 156 :VMTDEEVNF 1xkpC 96 :RLRLQELDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29277 # 2b5iC.156.60 read from T0287.t06.many.frag # found chain 2b5iC in template set T0287 156 :VMTDEEVNF 2b5iC 94 :QLQKKEIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29278 # 1yb3A.156.87 read from T0287.t06.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1yb3A 80 :AFPKEEL T0287 164 :F 1yb3A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=29280 # 1t6aA.156.72 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 T0287 156 :VMTDEEVN 1t6aA 72 :VRTAGEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=29281 # 1f60B.156.60 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 156 :VMTDEEVNF 1f60B 1173 :VVEDDKVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29282 # 1gw5S.156.68 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 156 :VMTDEEVNF 1gw5S 69 :ICVDVNDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29283 # 1vr8A.156.64 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMT 1vr8A 77 :VYK T0287 160 :EEVNF 1vr8A 81 :EEAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29285 # 1zn6A.156.183 read from T0287.t06.many.frag # found chain 1zn6A in template set T0287 156 :VMTDEEVNF 1zn6A 184 :ILPDGAYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29286 # 1yj7A.156.127 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 156 :VMTDEEVNF 1yj7A 147 :VISSPEVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29287 # 2a90A.156.28 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 156 :VMTD 2a90A 50 :EFES T0287 162 :VNF 2a90A 56 :KWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29289 # 1ysqA.156.150 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1ysqA 149 :S T0287 158 :TDEEVNF 1ysqA 151 :STSRLKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29291 # 1zh1A.156.96 read from T0287.t06.many.frag # found chain 1zh1A in template set T0287 156 :VMTDEEVNF 1zh1A 132 :GMTTDNVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29292 # 1uwcA.156.225 read from T0287.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1uwcA 226 :VCTGDEV T0287 164 :F 1uwcA 234 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=29294 # 2czrA.156.75 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTDE 2czrA 68 :AIPDN T0287 162 :VNF 2czrA 74 :VFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29296 # 1ry9A.156.114 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)V162 (1ry9A)V109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1ry9A)H110 because G (3-10) conformation "forbidden" or filtered. T0287 156 :VMTDEE 1ry9A 103 :VIKDDY T0287 164 :F 1ry9A 111 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=29298 # 1yymG.156.84 read from T0287.t06.many.frag # found chain 1yymG in template set Warning: unaligning (T0287)M157 (1yymG)C228 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :V 1yymG 227 :K T0287 158 :TDEEVNF 1yymG 229 :NDKKFNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29300 # 1pv5A.156.223 read from T0287.t06.many.frag # found chain 1pv5A in training set T0287 156 :VMTDEEVNF 1pv5A 221 :IDSDDDIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29301 # 1dmgA.156.16 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 156 :VMTDEEVNF 1dmgA 18 :EISDFVFNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29302 # 1xg8A.156.12 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)M157 (1xg8A)G5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1xg8A)A6 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1xg8A 4 :Y T0287 159 :DEEVNF 1xg8A 7 :DVICAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29304 # 1uylA.156.187 read from T0287.t06.many.frag # found chain 1uylA in training set T0287 156 :VMTDEEVNF 1uylA 188 :LHLKEDQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29305 # 1yreA.156.177 read from T0287.t06.many.frag # found chain 1yreA in template set T0287 156 :VMTDEEVNF 1yreA 176 :SITDHEWPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29306 # 1jiwI.156.28 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E160 (1jiwI)S33 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :VMTD 1jiwI 29 :ELRD T0287 161 :EVNF 1jiwI 34 :EVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29308 # 1cfzA.157.76 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)D159 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 157 :MT 1cfzA 77 :LR T0287 160 :E 1cfzA 80 :E T0287 163 :NFY 1cfzA 83 :PAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29311 # 1zpvA.157.51 read from T0287.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)E160 (1zpvA)E52 because E (beta_S) conformation "forbidden" or filtered. T0287 157 :MTD 1zpvA 49 :SSD T0287 161 :EVNFY 1zpvA 53 :KQDFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29313 # 2c60A.157.72 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFY 2c60A 92 :ILL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29315 # 1no5A.157.51 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 157 :M 1no5A 52 :I T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29317 # 1wnaA.157.93 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 157 :MTDEEVNFY 1wnaA 94 :VSPGEMTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29318 # 1h5rA.157.178 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 157 :MTDEEVNFY 1h5rA 179 :YDNDVVQMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29319 # 12asA.157.122 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEV 12asA 123 :MGDGER T0287 164 :FY 12asA 130 :FS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29321 # 2b5iC.157.61 read from T0287.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)M157 (2b5iC)L95 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 2b5iC 96 :QKKEIHLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=29322 # 1xkpC.157.96 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 157 :MTDEEVNFY 1xkpC 97 :LRLQELDTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29323 # 1f60B.157.61 read from T0287.t06.many.frag # found chain 1f60B in training set Warning: unaligning (T0287)N163 (1f60B)S1180 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :MTDEEV 1f60B 1174 :VEDDKV T0287 164 :FY 1f60B 1181 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29325 # 2a8eA.157.174 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 157 :MTDEEVNFY 2a8eA 175 :LQKEEVLNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29326 # 1t6aA.157.73 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)D159 (1t6aA)A75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 157 :MT 1t6aA 73 :RT T0287 160 :EEVN 1t6aA 76 :GEET Number of specific fragments extracted= 2 number of extra gaps= 2 total=29328 # 1gw5S.157.69 read from T0287.t06.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)N163 (1gw5S)N76 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :MTDEEV 1gw5S 70 :CVDVND T0287 164 :FY 1gw5S 77 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29330 # 1yj7A.157.128 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)D159 (1yj7A)S150 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :MT 1yj7A 148 :IS T0287 160 :EEVNFY 1yj7A 151 :PEVNLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29332 # 1yb3A.157.88 read from T0287.t06.many.frag # found chain 1yb3A in training set T0287 157 :MTDEEVNFY 1yb3A 81 :FPKEELSKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29333 # 1zh1A.157.97 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTDE 1zh1A 133 :MTTD T0287 162 :VNFY 1zh1A 138 :VKCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29335 # 2a90A.157.29 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTD 2a90A 51 :FES T0287 162 :VNFY 2a90A 56 :KWLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29337 # 1uwcA.157.226 read from T0287.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 157 :MT 1uwcA 227 :CT T0287 160 :EEV 1uwcA 230 :DEV T0287 165 :Y 1uwcA 235 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=29340 # 1h70A.157.194 read from T0287.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)M157 (1h70A)E194 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 1h70A 195 :IPEEESYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29341 # 1xg8A.157.13 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)T158 (1xg8A)A6 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :M 1xg8A 5 :G T0287 159 :DEEVNFY 1xg8A 7 :DVICASC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29343 # 1zn6A.157.184 read from T0287.t06.many.frag # found chain 1zn6A in template set T0287 157 :MTDEEVNFY 1zn6A 185 :LPDGAYGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29344 # 1pbjA.157.101 read from T0287.t06.many.frag # found chain 1pbjA in training set Warning: unaligning (T0287)E160 (1pbjA)D105 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTD 1pbjA 102 :EED T0287 161 :EVNFY 1pbjA 106 :EIIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29346 # 2czrA.157.76 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E160 (2czrA)N72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 157 :MTD 2czrA 69 :IPD T0287 162 :VNFY 2czrA 74 :VFYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29348 # 1vr8A.157.65 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MT 1vr8A 78 :YK T0287 160 :EEVNFY 1vr8A 81 :EEAKKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29350 # 1n9pA.157.151 read from T0287.t06.many.frag # found chain 1n9pA in training set Warning: unaligning (T0287)Y165 (1n9pA)G324 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTDEEVNF 1n9pA 316 :YTEDEVLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=29351 # 1o97D.157.287 read from T0287.t06.many.frag # found chain 1o97D in training set T0287 157 :MTDEEVNFY 1o97D 288 :NTDPGASIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29352 # 1t3gA.157.19 read from T0287.t06.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFY 1t3gA 424 :GEEERFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29353 # 1m9zA.157.41 read from T0287.t06.many.frag # found chain 1m9zA in training set T0287 157 :MTDEEVNFY 1m9zA 67 :KNDENITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29354 # 1vr7A.157.93 read from T0287.t06.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 157 :MT 1vr7A 82 :TC T0287 162 :VNFY 1vr7A 87 :VDPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29356 # 1kzfA.157.184 read from T0287.t06.many.frag # found chain 1kzfA in training set T0287 157 :MTDEEVNFY 1kzfA 165 :LTEKERIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29357 # 1cfzA.158.77 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 158 :TDE 1cfzA 78 :RDE T0287 163 :NFYA 1cfzA 83 :PALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29359 # 2c60A.158.73 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYA 2c60A 92 :ILLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29361 # 1zpvA.158.52 read from T0287.t06.many.frag # found chain 1zpvA in template set T0287 158 :TDEEVNFYA 1zpvA 50 :SDEKQDFTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29362 # 1wnaA.158.94 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 158 :TDEEVNFYA 1wnaA 95 :SPGEMTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29363 # 1h5rA.158.179 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 158 :TDEEVNFYA 1h5rA 180 :DNDVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29364 # 1gw5S.158.70 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 158 :TDEEVNFYA 1gw5S 71 :VDVNDNNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29365 # 12asA.158.123 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 158 :TD 12asA 124 :GD T0287 161 :EVNFYA 12asA 127 :ERQFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=29367 # 1no5A.158.52 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=29368 # 1uwcA.158.227 read from T0287.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :T 1uwcA 228 :T T0287 160 :EEVNFYA 1uwcA 230 :DEVQCCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29370 # 1t6aA.158.74 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 158 :TD 1t6aA 74 :TA T0287 161 :EVN 1t6aA 77 :EET T0287 166 :A 1t6aA 82 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=29373 # 1h70A.158.195 read from T0287.t06.many.frag # found chain 1h70A in training set T0287 158 :TDEEVNFYA 1h70A 195 :IPEEESYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29374 # 2a90A.158.30 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)D159 (2a90A)S53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. T0287 158 :T 2a90A 52 :E T0287 161 :EVNFYA 2a90A 55 :GKWLPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29376 # 1xkpC.158.97 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 158 :TDEEVNFYA 1xkpC 98 :RLQELDTHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29377 # 1yj7A.158.129 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 158 :TDEEVNFYA 1yj7A 149 :SSPEVNLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29378 # 1f60B.158.62 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 158 :TDEEVNFYA 1f60B 1175 :EDDKVSLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29379 # 2b5iC.158.62 read from T0287.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)Y165 (2b5iC)Y103 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDEEVNF 2b5iC 96 :QKKEIHL T0287 166 :A 2b5iC 104 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=29381 # 1zh1A.158.98 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E160 (1zh1A)D136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1zh1A)K139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1zh1A)C142 because G (3-10) conformation "forbidden" or filtered. T0287 158 :TD 1zh1A 134 :TT T0287 161 :EV 1zh1A 137 :NV T0287 164 :FY 1zh1A 140 :CP Number of specific fragments extracted= 3 number of extra gaps= 3 total=29384 # 1xg8A.158.14 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 158 :TDEEVNFYA 1xg8A 6 :ADVICASCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29385 # 1pbjA.158.102 read from T0287.t06.many.frag # found chain 1pbjA in training set T0287 158 :TDEEVNFYA 1pbjA 103 :EDDEIIGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29386 # 2btiA.158.37 read from T0287.t06.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)D159 (2btiA)P37 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :T 2btiA 36 :A T0287 160 :EEVNFYA 2btiA 38 :KEVSVHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29388 # 1t3gA.158.20 read from T0287.t06.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFYA 1t3gA 424 :GEEERFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29389 # 1l3lA.158.138 read from T0287.t06.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)E160 (1l3lA)R141 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TD 1l3lA 139 :LD T0287 161 :EVNFYA 1l3lA 142 :EIDAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29391 # 1zn6A.158.185 read from T0287.t06.many.frag # found chain 1zn6A in template set T0287 158 :TDEEVNFYA 1zn6A 186 :PDGAYGDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29392 # 1o97D.158.288 read from T0287.t06.many.frag # found chain 1o97D in training set T0287 158 :TDEEVNFYA 1o97D 289 :TDPGASIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29393 # 1uylA.158.189 read from T0287.t06.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)V162 (1uylA)Q194 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1uylA)Y197 because G (3-10) conformation "forbidden" or filtered. T0287 158 :TDEE 1uylA 190 :LKED T0287 163 :NF 1uylA 195 :TE T0287 166 :A 1uylA 198 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=29396 # 1mkaA.158.59 read from T0287.t06.many.frag # found chain 1mkaA in template set T0287 158 :TDEEVNFYA 1mkaA 60 :INPDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29397 # 2a8eA.158.175 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 158 :TDEEVNFYA 2a8eA 176 :QKEEVLNMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29398 # 1ngmB.158.31 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)E160 (1ngmB)E468 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1ngmB)H473 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 158 :TD 1ngmB 466 :DD T0287 161 :EVNF 1ngmB 469 :ELNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29400 # 1lbu.158.162 read from T0287.t06.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :TD 1lbu 163 :GA T0287 161 :EV 1lbu 166 :SQ T0287 164 :FYA 1lbu 169 :FCA Number of specific fragments extracted= 3 number of extra gaps= 2 total=29403 # 1yzxA.158.189 read from T0287.t06.many.frag # found chain 1yzxA in template set Warning: unaligning (T0287)E160 (1yzxA)G192 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1yzxA)H195 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :TD 1yzxA 190 :VD T0287 161 :EV 1yzxA 193 :QT T0287 164 :FYA 1yzxA 196 :MLF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29406 # 1gw5S.159.71 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 159 :DEEVNFYAN 1gw5S 72 :DVNDNNLAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29407 # 1cfzA.159.78 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 159 :DE 1cfzA 79 :DE T0287 163 :NFYAN 1cfzA 83 :PALFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29409 # 1wnaA.159.95 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 159 :DEEVNFYAN 1wnaA 96 :PGEMTALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29410 # 1l3lA.159.139 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 159 :DEEVNFYAN 1l3lA 140 :DREIDAVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29411 # 1h5rA.159.180 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 159 :DEEVNFYAN 1h5rA 181 :NDVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29412 # 2c60A.159.74 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYA 2c60A 92 :ILLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29414 # 1xkpC.159.98 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 159 :DEEVNFYAN 1xkpC 99 :LQELDTHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29415 # 1xg8A.159.15 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E161 (1xg8A)I9 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DE 1xg8A 7 :DV T0287 162 :VNFYAN 1xg8A 10 :CASCVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29417 # 12asA.159.124 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :D 12asA 125 :D T0287 161 :EV 12asA 127 :ER T0287 164 :FYAN 12asA 130 :FSTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29420 # 1h70A.159.196 read from T0287.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)V162 (1h70A)E199 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEE 1h70A 196 :PEE T0287 163 :NFYAN 1h70A 200 :SYAAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29422 # 1zh1A.159.99 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)N163 (1zh1A)K139 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DEEV 1zh1A 135 :TDNV T0287 164 :FYAN 1zh1A 140 :CPCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29424 # 1xdnA.159.68 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1xdnA)D116 Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 167 :N 1xdnA 124 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=29426 # 1zpvA.159.53 read from T0287.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)E160 (1zpvA)E52 because E (beta_S) conformation "forbidden" or filtered. T0287 159 :D 1zpvA 51 :D T0287 161 :EVNFYAN 1zpvA 53 :KQDFTYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29428 # 1f60B.159.63 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 159 :DEEVNFYAN 1f60B 1176 :DDKVSLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29429 # 2a90A.159.31 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 159 :D 2a90A 53 :S T0287 162 :VNFYAN 2a90A 56 :KWLPYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29431 # 1yj7A.159.130 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 159 :DEEVNFYAN 1yj7A 150 :SPEVNLAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29432 # 1mkaA.159.60 read from T0287.t06.many.frag # found chain 1mkaA in template set T0287 159 :DEEVNFYAN 1mkaA 61 :NPDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29433 # 1ngmB.159.32 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)E160 (1ngmB)E468 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1ngmB)L475 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :D 1ngmB 467 :D T0287 161 :EVNFY 1ngmB 469 :ELNAH Number of specific fragments extracted= 2 number of extra gaps= 2 total=29435 # 1lbu.159.163 read from T0287.t06.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :D 1lbu 164 :A T0287 161 :EV 1lbu 166 :SQ T0287 164 :FYAN 1lbu 169 :FCAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29438 # 1t0tV.159.150 read from T0287.t06.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)E160 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :D 1t0tV 151 :Q T0287 161 :EVNFYAN 1t0tV 153 :NDNWYML Number of specific fragments extracted= 2 number of extra gaps= 1 total=29440 # 1uylA.159.190 read from T0287.t06.many.frag # found chain 1uylA in training set T0287 159 :DEEVNFYAN 1uylA 191 :KEDQTEYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29441 # 1uwcA.159.228 read from T0287.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEV 1uwcA 229 :GDEV T0287 164 :FYAN 1uwcA 234 :CCEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29443 # 1o97D.159.289 read from T0287.t06.many.frag # found chain 1o97D in training set T0287 159 :DEEVNFYAN 1o97D 290 :DPGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29444 # 2b5iC.159.63 read from T0287.t06.many.frag # found chain 2b5iC in template set T0287 159 :DEEVNFYAN 2b5iC 97 :KKEIHLYQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29445 # 1qo7A.159.366 read from T0287.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0287)V162 (1qo7A)G372 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1qo7A)G373 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEE 1qo7A 369 :HAE T0287 164 :FYAN 1qo7A 374 :HFAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29447 # 1t6aA.159.75 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 Warning: unaligning (T0287)N167 (1t6aA)I83 because E (beta_S) conformation "forbidden" or filtered. T0287 159 :D 1t6aA 75 :A T0287 161 :EVN 1t6aA 77 :EET T0287 166 :A 1t6aA 82 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=29450 # 1rcwA.159.102 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 159 :DEEVNFYAN 1rcwA 103 :PEELEAHEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29451 # 1no5A.159.53 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=29452 # 2a8eA.159.176 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 159 :DEEVNFYAN 2a8eA 177 :KEEVLNMNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29453 # 1i60A.159.248 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 159 :DEEVNFYAN 1i60A 249 :RPEYYKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29454 # 1gw5S.160.72 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 160 :EEVNFYANL 1gw5S 73 :VNDNNLAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29455 # 1h5rA.160.181 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 T0287 160 :EEVNFYAN 1h5rA 182 :DVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29456 # 1xg8A.160.16 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 160 :EEVNFYANL 1xg8A 8 :VICASCVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29457 # 1l3lA.160.140 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 160 :EEVNFYANL 1l3lA 141 :REIDAVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29458 # 2c60A.160.75 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :E 2c60A 89 :E T0287 163 :NFYA 2c60A 92 :ILLK T0287 168 :L 2c60A 97 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=29461 # 1xkpC.160.99 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 160 :EEVNFYANL 1xkpC 100 :QELDTHGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29462 # 1xdnA.160.69 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 167 :NL 1xdnA 124 :YH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29464 # 1t0tV.160.151 read from T0287.t06.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)Y165 (1t0tV)Y157 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVNF 1t0tV 152 :GNDNW T0287 166 :ANL 1t0tV 158 :MLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29466 # 1zh1A.160.100 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :E 1zh1A 136 :D T0287 162 :VNFYANL 1zh1A 138 :VKCPCQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29468 # 1f60B.160.64 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 160 :EEVNFYANL 1f60B 1177 :DKVSLDDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29469 # 1lbu.160.164 read from T0287.t06.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1lbu 166 :SQGFCALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29470 # 1rcwA.160.103 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 160 :EEVNFYANL 1rcwA 104 :EELEAHEPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29471 # 1mkaA.160.61 read from T0287.t06.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 T0287 160 :EEVNFYAN 1mkaA 62 :PDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=29472 # 1qnrA.160.129 read from T0287.t06.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)E160 (1qnrA)N130 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1qnrA 131 :ATTWYTNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29473 # 12asA.160.125 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEV 12asA 126 :GER T0287 164 :FYANL 12asA 130 :FSTLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29475 # 1h70A.160.197 read from T0287.t06.many.frag # found chain 1h70A in training set T0287 160 :EEVNFYANL 1h70A 197 :EEESYAANC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29476 # 1ngmB.160.33 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1ngmB)L475 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFY 1ngmB 468 :EELNAH T0287 168 :L 1ngmB 476 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=29478 # 1zgkA.160.240 read from T0287.t06.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 T0287 160 :E 1zgkA 542 :E T0287 163 :NFYANL 1zgkA 545 :TFVAPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29480 # 1yj7A.160.131 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)F164 (1yj7A)L155 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVN 1yj7A 151 :PEVN T0287 165 :YANL 1yj7A 156 :APSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29482 # 2ex0A.160.376 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 160 :EEVNFYANL 2ex0A 401 :SQVIFWDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29483 # 1fo8A.160.72 read from T0287.t06.many.frag # found chain 1fo8A in training set T0287 160 :EEVNFYANL 1fo8A 177 :DHRKFQGYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29484 # 2b5iC.160.64 read from T0287.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)N167 (2b5iC)T105 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 2b5iC 98 :KEIHLYQ T0287 168 :L 2b5iC 106 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=29486 # 1wnaA.160.96 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 160 :EEVNFYANL 1wnaA 97 :GEMTALLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29487 # 1o97D.160.290 read from T0287.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1o97D)K300 T0287 160 :EEVNFYAN 1o97D 291 :PGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29488 # 1dmgA.160.20 read from T0287.t06.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEV 1dmgA 22 :FVF T0287 164 :FYANL 1dmgA 26 :IDPNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29490 # 1zavA.160.126 read from T0287.t06.many.frag # found chain 1zavA in template set T0287 160 :EEVNFYANL 1zavA 126 :EEVENIAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29491 # 1i60A.160.249 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 160 :EEVNFYANL 1i60A 250 :PEYYKLTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29492 # 1dqzA.160.42 read from T0287.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1dqzA 45 :DYNGWDIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29493 # 1vk4A.160.186 read from T0287.t06.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1vk4A 175 :REAETLT T0287 168 :L 1vk4A 183 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=29495 # 1h8eG.160.187 read from T0287.t06.many.frag # found chain 1h8eG in template set Warning: unaligning (T0287)V162 (1h8eG)M190 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h8eG)D197 T0287 160 :EE 1h8eG 188 :ES T0287 163 :NFYAN 1h8eG 191 :SIYDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=29497 # 1gw5S.161.73 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 161 :EVNFYANLK 1gw5S 74 :NDNNLAYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29498 # 1xg8A.161.17 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 161 :EVNFYANLK 1xg8A 9 :ICASCVNAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29499 # 1h5rA.161.182 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 161 :EVNFYAN 1h5rA 183 :VVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29500 # 2c60A.161.76 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 163 :NFYANLK 2c60A 92 :ILLKNQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29501 # 1l3lA.161.141 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 161 :EVNFYANLK 1l3lA 142 :EIDAVAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29502 # 1t0tV.161.152 read from T0287.t06.many.frag # found chain 1t0tV in training set T0287 161 :EVNFYANLK 1t0tV 153 :NDNWYMLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29503 # 1qnrA.161.130 read from T0287.t06.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)N167 (1qnrA)N137 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1qnrA 131 :ATTWYT T0287 168 :LK 1qnrA 138 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29505 # 1xdnA.161.70 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)N163 (1xdnA)N120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EV 1xdnA 118 :NE T0287 164 :F 1xdnA 121 :F T0287 167 :NLK 1xdnA 124 :YHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=29508 # 1dmgA.161.21 read from T0287.t06.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)V162 (1dmgA)F24 because G (3-10) conformation "forbidden" or filtered. T0287 161 :E 1dmgA 23 :V T0287 163 :NFYANLK 1dmgA 25 :NIDPNYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29510 # 1rcwA.161.104 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 161 :EVNFYANLK 1rcwA 105 :ELEAHEPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29511 # 2ex0A.161.377 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 161 :EVNFYANLK 2ex0A 402 :QVIFWDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29512 # 1fo8A.161.73 read from T0287.t06.many.frag # found chain 1fo8A in training set T0287 161 :EVNFYANLK 1fo8A 178 :HRKFQGYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29513 # 1lbu.161.165 read from T0287.t06.many.frag # found chain 1lbu in training set T0287 161 :EVNFYANLK 1lbu 166 :SQGFCALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29514 # 1josA.161.60 read from T0287.t06.many.frag # found chain 1josA in training set T0287 161 :EVNFYANLK 1josA 61 :EMAIEQGMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29515 # 1ngmB.161.34 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)N167 (1ngmB)L475 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1ngmB 469 :ELNAHL T0287 168 :LK 1ngmB 476 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29517 # 1mkaA.161.62 read from T0287.t06.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1mkaA)F71 T0287 161 :EVNFYAN 1mkaA 63 :DLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=29518 # 1vk4A.161.187 read from T0287.t06.many.frag # found chain 1vk4A in template set T0287 161 :EVNFYANLK 1vk4A 176 :EAETLTGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29519 # 1hp1A.161.297 read from T0287.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1hp1A)R332 Warning: unaligning (T0287)N163 (1hp1A)L334 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 1hp1A 333 :V T0287 164 :FYANLK 1hp1A 335 :YTPEIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29521 # 1xkpC.161.100 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 161 :EVNFYANLK 1xkpC 101 :ELDTHGLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29522 # 1e0tA.161.314 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LK 1e0tA 322 :LE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29523 # 1dqzA.161.43 read from T0287.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYAN 1dqzA 46 :YNGWDIN T0287 169 :K 1dqzA 54 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29525 # 1rz2A.161.143 read from T0287.t06.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)V162 (1rz2A)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :E 1rz2A 144 :D T0287 163 :N 1rz2A 146 :S T0287 165 :YANLK 1rz2A 148 :FGSLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=29528 # 1zdyA.161.127 read from T0287.t06.many.frag # found chain 1zdyA in template set T0287 161 :EVNFYANLK 1zdyA 128 :NMPGVAELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29529 # 1t0hB.161.87 read from T0287.t06.many.frag # found chain 1t0hB in template set T0287 161 :EVNFYANLK 1t0hB 289 :RSNTRSSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29530 # 1thtA.161.239 read from T0287.t06.many.frag # found chain 1thtA in template set T0287 161 :EVNFYANLK 1thtA 240 :SHDLGENLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29531 # 1zh1A.161.101 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)N163 (1zh1A)K139 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EV 1zh1A 137 :NV T0287 164 :FYANLK 1zh1A 140 :CPCQVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29533 # 1i60A.161.250 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 161 :EVNFYANLK 1i60A 251 :EYYKLTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29534 # 1zgkA.161.241 read from T0287.t06.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 Warning: unaligning (T0287)N163 (1zgkA)T545 because E (beta_S) conformation "forbidden" or filtered. T0287 164 :FYANLK 1zgkA 546 :FVAPMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29535 # 1zavA.161.127 read from T0287.t06.many.frag # found chain 1zavA in template set Warning: unaligning (T0287)K169 (1zavA)P135 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1zavA 127 :EVENIAKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29536 # 12asA.161.126 read from T0287.t06.many.frag # found chain 12asA in template set T0287 161 :EVNFYANLK 12asA 127 :ERQFSTLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29537 # 1xg8A.162.18 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 162 :VNFYANLKT 1xg8A 10 :CASCVNAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29538 # 1gw5S.162.74 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 162 :VNFYANLKT 1gw5S 75 :DNNLAYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29539 # 2c60A.162.77 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 2c60A 92 :ILLK T0287 168 :LKT 2c60A 97 :QDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=29541 # 1h5rA.162.183 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 162 :VNFYAN 1h5rA 184 :VQMAKN T0287 170 :T 1h5rA 192 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29543 # 2bgcA.162.205 read from T0287.t06.many.frag # found chain 2bgcA in template set T0287 162 :VNFYANLKT 2bgcA 205 :CFYVQNLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29544 # 1dmgA.162.22 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 162 :VNFYANLKT 1dmgA 24 :FNIDPNYDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29545 # 1e0tA.162.315 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKT 1e0tA 322 :LEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29546 # 1josA.162.61 read from T0287.t06.many.frag # found chain 1josA in training set T0287 162 :VNFYANLKT 1josA 62 :MAIEQGMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29547 # 1l3lA.162.142 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 162 :VNFYANLKT 1l3lA 143 :IDAVAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29548 # 1vk4A.162.188 read from T0287.t06.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :VNFYA 1vk4A 177 :AETLT T0287 168 :LKT 1vk4A 183 :TND Number of specific fragments extracted= 2 number of extra gaps= 1 total=29550 # 1qnrA.162.131 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 162 :VNFYANLKT 1qnrA 132 :TTWYTNTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29551 # 1rcwA.162.105 read from T0287.t06.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYA 1rcwA 106 :LEAHE T0287 168 :LKT 1rcwA 112 :SEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29553 # 1thtA.162.240 read from T0287.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)Y165 (1thtA)G244 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VNF 1thtA 241 :HDL T0287 166 :ANLKT 1thtA 245 :ENLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29555 # 2ex0A.162.378 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 162 :VNFYANLKT 2ex0A 403 :VIFWDSLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29556 # 1t0tV.162.153 read from T0287.t06.many.frag # found chain 1t0tV in training set T0287 162 :VNFYANLKT 1t0tV 154 :DNWYMLSME Number of specific fragments extracted= 1 number of extra gaps= 0 total=29557 # 1t0hB.162.88 read from T0287.t06.many.frag # found chain 1t0hB in template set Warning: unaligning (T0287)N163 (1t0hB)N291 because G (3-10) conformation "forbidden" or filtered. T0287 162 :V 1t0hB 290 :S T0287 164 :FYANLKT 1t0hB 292 :TRSSLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29559 # 1rz2A.162.144 read from T0287.t06.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)V162 (1rz2A)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NFYANLKT 1rz2A 146 :SMFGSLKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29560 # 1zavA.162.128 read from T0287.t06.many.frag # found chain 1zavA in template set T0287 162 :VNFYANLKT 1zavA 128 :VENIAKLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29561 # 1hp1A.162.298 read from T0287.t06.many.frag # found chain 1hp1A in training set T0287 162 :VNFYANLKT 1hp1A 333 :VLYTPEIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29562 # 1xdnA.162.71 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 162 :VNFYANLKT 1xdnA 119 :ENFFGYHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29563 # 1g5aA.162.105 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 162 :VNFYANLKT 1g5aA 106 :DLFAGDLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29564 # 1zdyA.162.128 read from T0287.t06.many.frag # found chain 1zdyA in template set Warning: unaligning (T0287)N163 (1zdyA)P130 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 1zdyA 129 :M T0287 164 :FYANLKT 1zdyA 131 :GVAELSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29566 # 1dqzA.162.44 read from T0287.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFYAN 1dqzA 47 :NGWDIN T0287 169 :KT 1dqzA 54 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29568 # 1fo8A.162.74 read from T0287.t06.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)F164 (1fo8A)F181 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VN 1fo8A 179 :RK T0287 165 :YANLKT 1fo8A 182 :QGYYKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29570 # 2ex0A.162.177 read from T0287.t06.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)N167 (2ex0A)K207 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VNFYA 2ex0A 202 :TDYFE T0287 168 :LKT 2ex0A 208 :AEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29572 # 1ngmB.162.35 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)N163 (1ngmB)N471 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 162 :V 1ngmB 470 :L T0287 164 :FY 1ngmB 472 :AH T0287 167 :NLKT 1ngmB 475 :LNEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=29575 # 1i60A.162.251 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 162 :VNFYANLKT 1i60A 252 :YYKLTAEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29576 # 1txoA.162.198 read from T0287.t06.many.frag # found chain 1txoA in template set T0287 162 :VNFYANLKT 1txoA 202 :ILEALQIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29577 # 1qgiA.162.120 read from T0287.t06.many.frag # found chain 1qgiA in training set T0287 162 :VNFYANLKT 1qgiA 121 :KVFCGKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29578 # 2ar0A.162.485 read from T0287.t06.many.frag # found chain 2ar0A in template set T0287 162 :VNFYANLKT 2ar0A 486 :VLAAEAMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29579 # 1gw5S.163.75 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 163 :NFYANLKTI 1gw5S 76 :NNLAYLEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29580 # 1xg8A.163.19 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 163 :NFYANLKTI 1xg8A 11 :ASCVNAPTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29581 # 1josA.163.62 read from T0287.t06.many.frag # found chain 1josA in training set T0287 163 :NFYANLKTI 1josA 63 :AIEQGMKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29582 # 1e0tA.163.316 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTI 1e0tA 322 :LEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29583 # 2c60A.163.78 read from T0287.t06.many.frag # found chain 2c60A in template set T0287 163 :NFYANLKTI 2c60A 92 :ILLKNQDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29584 # 2bgcA.163.206 read from T0287.t06.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)N167 (2bgcA)N210 because D (zeta) conformation "forbidden" or filtered. T0287 163 :NFYA 2bgcA 206 :FYVQ T0287 168 :LKTI 2bgcA 211 :LDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29586 # 1dmgA.163.23 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 163 :NFYANLKTI 1dmgA 25 :NIDPNYDVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29587 # 1h5rA.163.184 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)N167 (1h5rA)N189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 163 :NFYA 1h5rA 185 :QMAK T0287 170 :TI 1h5rA 192 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29589 # 1g5aA.163.106 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NFY 1g5aA 107 :LFA T0287 167 :NLKTI 1g5aA 111 :DLKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29591 # 1uf3A.163.12 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 163 :NFYANLKTI 1uf3A 13 :NPMGDLEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29592 # 2ex0A.163.178 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 163 :NFYANLKTI 2ex0A 203 :DYFEKAEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29593 # 1rcwA.163.106 read from T0287.t06.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 163 :NFYA 1rcwA 107 :EAHE T0287 168 :LKTI 1rcwA 112 :SEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29595 # 1l3lA.163.143 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 163 :NFYANLKTI 1l3lA 144 :DAVAAAATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29596 # 1thtA.163.241 read from T0287.t06.many.frag # found chain 1thtA in template set T0287 163 :NFYANLKTI 1thtA 242 :DLGENLVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29597 # 1xdnA.163.72 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)F164 (1xdnA)F121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 163 :N 1xdnA 120 :N T0287 166 :ANLKTI 1xdnA 123 :GYHILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29599 # 1vk4A.163.189 read from T0287.t06.many.frag # found chain 1vk4A in template set T0287 163 :NFYANLKTI 1vk4A 178 :ETLTGTNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29600 # 1vliA.163.260 read from T0287.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE at template residue (1vliA)S249 Warning: unaligning (T0287)A166 (1vliA)L252 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FY 1vliA 250 :FA T0287 167 :NLKTI 1vliA 253 :NPDEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29602 # 1fm0D.163.19 read from T0287.t06.many.frag # found chain 1fm0D in training set Warning: unaligning (T0287)N167 (1fm0D)D24 because G (3-10) conformation "forbidden" or filtered. T0287 163 :NFYA 1fm0D 20 :EVAA T0287 168 :LKTI 1fm0D 25 :FPTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29604 # 1rz2A.163.145 read from T0287.t06.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 163 :N 1rz2A 146 :S T0287 165 :YANLKTI 1rz2A 148 :FGSLKKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29606 # 1wo8A.163.104 read from T0287.t06.many.frag # found chain 1wo8A in template set T0287 163 :NFYANLKTI 1wo8A 105 :PLATNLVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29607 # 1uhvA.163.73 read from T0287.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)N163 (1uhvA)K74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1uhvA)Y77 because D (zeta) conformation "forbidden" or filtered. T0287 164 :FY 1uhvA 75 :PF T0287 167 :NLKTI 1uhvA 78 :NFTYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29609 # 1t0hB.163.89 read from T0287.t06.many.frag # found chain 1t0hB in template set Warning: unaligning (T0287)N167 (1t0hB)S295 because P (beta_P) conformation "forbidden" or filtered. T0287 163 :NFYA 1t0hB 291 :NTRS T0287 168 :LKTI 1t0hB 296 :LAEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29611 # 1qnrA.163.132 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 163 :NFYANLKTI 1qnrA 133 :TWYTNTAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29612 # 1rkuA.163.62 read from T0287.t06.many.frag # found chain 1rkuA in training set T0287 163 :NFYANLKTI 1rkuA 62 :EVIATLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29613 # 1eokA.163.56 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 163 :NFYANLKTI 1eokA 57 :GMMGSFKSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29614 # 1txoA.163.199 read from T0287.t06.many.frag # found chain 1txoA in template set T0287 163 :NFYANLKTI 1txoA 203 :LEALQIPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29615 # 1fo8A.163.75 read from T0287.t06.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)F164 (1fo8A)F181 because G (3-10) conformation "forbidden" or filtered. T0287 163 :N 1fo8A 180 :K T0287 165 :YANLKTI 1fo8A 182 :QGYYKIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29617 # 1t77A.163.316 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 163 :NFYANLKTI 1t77A 2392 :ELPPWAKTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29618 # 2bw4A.163.190 read from T0287.t06.many.frag # found chain 2bw4A in template set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bw4A)Y196 T0287 163 :NFYA 2bw4A 191 :GNYK T0287 169 :KTI 2bw4A 197 :ETP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29620 # 1f06A.163.86 read from T0287.t06.many.frag # found chain 1f06A in template set Warning: unaligning (T0287)N163 (1f06A)D87 because E (beta_S) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1f06A 88 :TYDNHRDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29621 # 1xg8A.164.20 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYANL 1xg8A 12 :SCVNA T0287 170 :TIE 1xg8A 18 :TSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29623 # 1josA.164.63 read from T0287.t06.many.frag # found chain 1josA in training set T0287 164 :FYANLKTIE 1josA 64 :IEQGMKGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29624 # 1gw5S.164.76 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 164 :FYANLKTIE 1gw5S 77 :NLAYLEAIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29625 # 1e0tA.164.317 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIE 1e0tA 322 :LEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29626 # 1dmgA.164.24 read from T0287.t06.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)A166 (1dmgA)P28 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FY 1dmgA 26 :ID T0287 167 :NLKTIE 1dmgA 29 :NYDVMW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29628 # 1xdnA.164.73 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :F 1xdnA 121 :F T0287 167 :NLKTIE 1xdnA 124 :YHILID Number of specific fragments extracted= 2 number of extra gaps= 1 total=29630 # 1uf3A.164.13 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 164 :FYANLKTIE 1uf3A 14 :PMGDLEALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29631 # 2c60A.164.79 read from T0287.t06.many.frag # found chain 2c60A in template set T0287 164 :FYANLKTIE 2c60A 93 :LLKNQDDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29632 # 1t77A.164.317 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 164 :FYANLKTIE 1t77A 2393 :LPPWAKTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29633 # 2bgcA.164.207 read from T0287.t06.many.frag # found chain 2bgcA in template set T0287 164 :FYANLKTIE 2bgcA 207 :YVQNLDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29634 # 1g5aA.164.107 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :FY 1g5aA 108 :FA T0287 167 :NLKTIE 1g5aA 111 :DLKGLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29636 # 1eokA.164.57 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 164 :FYANLKTIE 1eokA 58 :MMGSFKSYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29637 # 2ex0A.164.179 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 164 :FYANLKTIE 2ex0A 204 :YFEKAEFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29638 # 1wo8A.164.105 read from T0287.t06.many.frag # found chain 1wo8A in template set T0287 164 :FYANLKTIE 1wo8A 106 :LATNLVAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29639 # 1vliA.164.261 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 164 :FYANLKTIE 1vliA 250 :FALNPDELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29640 # 1thtA.164.242 read from T0287.t06.many.frag # found chain 1thtA in template set T0287 164 :FYANLKTIE 1thtA 243 :LGENLVVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29641 # 1f06A.164.87 read from T0287.t06.many.frag # found chain 1f06A in template set Warning: unaligning (T0287)F164 (1f06A)T88 because G (3-10) conformation "forbidden" or filtered. T0287 165 :YANLKTIE 1f06A 89 :YDNHRDIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=29642 # 1wa5C.164.75 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 164 :FYANLKTIE 1wa5C 76 :HLLPANNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29643 # 1rcwA.164.107 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 164 :FYANLKTIE 1rcwA 108 :AHEPSEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29644 # 2ak3A.164.164 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 164 :FYANLKTIE 2ak3A 164 :PETVVKRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29645 # 2exrA.164.447 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 164 :FYANLKTIE 2exrA 448 :PCAKVSSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29646 # 1t0hB.164.90 read from T0287.t06.many.frag # found chain 1t0hB in template set T0287 164 :FYANLKTIE 1t0hB 292 :TRSSLAEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29647 # 1xrjA.164.210 read from T0287.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0287)A166 (1xrjA)D213 because G (3-10) conformation "forbidden" or filtered. T0287 164 :FY 1xrjA 211 :GA T0287 167 :NLKTIE 1xrjA 214 :NLVAIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29649 # 1vjuA.164.142 read from T0287.t06.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1vjuA)Y143 T0287 165 :YANLKTIE 1vjuA 144 :YAVEEDCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=29650 # 1uhvA.164.74 read from T0287.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)N167 (1uhvA)N78 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYA 1uhvA 75 :PFY T0287 168 :LKTIE 1uhvA 79 :FTYID Number of specific fragments extracted= 2 number of extra gaps= 1 total=29652 # 1l3lA.164.144 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 164 :FYANLKTIE 1l3lA 145 :AVAAAATIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29653 # 1f35A.164.113 read from T0287.t06.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 164 :FY 1f35A 115 :MD T0287 167 :NLKTIE 1f35A 118 :NEADAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29655 # 2fb5A.164.42 read from T0287.t06.many.frag # found chain 2fb5A in template set T0287 164 :FYANLKTIE 2fb5A 43 :ILCKMEDIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29656 # 1h5rA.164.185 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 164 :FYAN 1h5rA 186 :MAKN T0287 170 :TIE 1h5rA 192 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29658 # 2al2A.164.213 read from T0287.t06.many.frag # found chain 2al2A in template set T0287 164 :FYANLKTIE 2al2A 214 :VAPNIQTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29659 # 1xg8A.165.21 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YANL 1xg8A 13 :CVNA T0287 170 :TIEQ 1xg8A 18 :TSKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29661 # 1josA.165.64 read from T0287.t06.many.frag # found chain 1josA in training set T0287 165 :YANLKTIEQ 1josA 65 :EQGMKGLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29662 # 1gw5S.165.77 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 165 :YANLKTIEQ 1gw5S 78 :LAYLEAIHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29663 # 1e0tA.165.318 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29664 # 1t77A.165.318 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 165 :YANLKTIEQ 1t77A 2394 :PPWAKTSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29665 # 1eokA.165.58 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N167 (1eokA)S61 because G (3-10) conformation "forbidden" or filtered. T0287 165 :YA 1eokA 59 :MG T0287 168 :LKTIEQ 1eokA 62 :FKSYKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29667 # 1uf3A.165.14 read from T0287.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQ 1uf3A 17 :DLEALEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29668 # 1vliA.165.262 read from T0287.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N167 (1vliA)N253 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YA 1vliA 251 :AL T0287 168 :LKTIEQ 1vliA 254 :PDELKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29670 # 2ex0A.165.180 read from T0287.t06.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)I171 (2ex0A)L211 because G (3-10) conformation "forbidden" or filtered. T0287 165 :YANLKT 2ex0A 205 :FEKAEF T0287 172 :EQ 2ex0A 212 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29672 # 1dmgA.165.25 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 165 :YANLKTIEQ 1dmgA 27 :DPNYDVMWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29673 # 1g5aA.165.108 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1g5aA 109 :A T0287 168 :LKTIEQ 1g5aA 112 :LKGLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29675 # 2exrA.165.448 read from T0287.t06.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)Y165 (2exrA)C449 because G (3-10) conformation "forbidden" or filtered. T0287 166 :ANLKTIEQ 2exrA 450 :AKVSSVEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29676 # 2c60A.165.80 read from T0287.t06.many.frag # found chain 2c60A in template set T0287 165 :YANLKTIEQ 2c60A 94 :LKNQDDLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29677 # 1wa5C.165.76 read from T0287.t06.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)N167 (1wa5C)P79 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YA 1wa5C 77 :LL T0287 168 :LKTIEQ 1wa5C 80 :ANNVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29679 # 1xdnA.165.74 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 166 :ANLKTIEQ 1xdnA 123 :GYHILIDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29680 # 2ak3A.165.165 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 165 :YANLKTIEQ 2ak3A 165 :ETVVKRLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29681 # 2bgcA.165.208 read from T0287.t06.many.frag # found chain 2bgcA in template set T0287 165 :YANLKTIEQ 2bgcA 208 :VQNLDYLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29682 # 1e4fT.165.163 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 165 :YANLKTIEQ 1e4fT 164 :VVPLKVYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29683 # 1wo8A.165.106 read from T0287.t06.many.frag # found chain 1wo8A in template set T0287 165 :YANLKTIEQ 1wo8A 107 :ATNLVAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29684 # 1f06A.165.88 read from T0287.t06.many.frag # found chain 1f06A in template set T0287 165 :YANLKTIEQ 1f06A 89 :YDNHRDIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29685 # 1vjuA.165.143 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 165 :YANLKTIEQ 1vjuA 144 :YAVEEDCRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29686 # 1xrjA.165.211 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 165 :YANLKTIEQ 1xrjA 212 :ADNLVAINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29687 # 1auoA.165.77 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 165 :YANLKTIEQ 1auoA 78 :SISLEELEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29688 # 2fb5A.165.43 read from T0287.t06.many.frag # found chain 2fb5A in template set T0287 165 :YANLKTIEQ 2fb5A 44 :LCKMEDIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29689 # 1rcwA.165.108 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 165 :YANLKTIEQ 1rcwA 109 :HEPSEAAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29690 # 1ryiA.165.281 read from T0287.t06.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1ryiA)D271 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 165 :Y 1ryiA 269 :T T0287 168 :LKTIEQ 1ryiA 272 :LGGLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=29692 # 1wdaA.165.535 read from T0287.t06.many.frag # found chain 1wdaA in template set T0287 165 :YANLKTIEQ 1wdaA 529 :ILSNKTLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29693 # 2al2A.165.214 read from T0287.t06.many.frag # found chain 2al2A in template set T0287 165 :YANLKTIEQ 2al2A 215 :APNIQTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29694 # 1i60A.165.254 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 165 :YANLKTIEQ 1i60A 255 :LTAEEAIQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29695 # 1f35A.165.114 read from T0287.t06.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1f35A 116 :D T0287 167 :NLKTIEQ 1f35A 118 :NEADALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29697 # 1gw5S.166.78 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 166 :ANLKTIEQY 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29698 # 1josA.166.65 read from T0287.t06.many.frag # found chain 1josA in training set T0287 166 :ANLKTIEQY 1josA 66 :QGMKGLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29699 # 1xg8A.166.22 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 166 :ANLKTIEQY 1xg8A 14 :VNAPTSKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29700 # 1e0tA.166.319 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29701 # 1t77A.166.319 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 166 :ANLKTIEQY 1t77A 2395 :PWAKTSEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29702 # 1eokA.166.59 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N167 (1eokA)S61 because G (3-10) conformation "forbidden" or filtered. T0287 166 :A 1eokA 60 :G T0287 168 :LKTIEQY 1eokA 62 :FKSYKDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29704 # 1rttA.166.57 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 166 :ANLKTIEQY 1rttA 58 :GFPPAVERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29705 # 1uf3A.166.15 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 166 :ANLKTIEQY 1uf3A 16 :GDLEALEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29706 # 2ak3A.166.166 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 166 :ANLKTIEQY 2ak3A 166 :TVVKRLKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29707 # 1ynbA.166.110 read from T0287.t06.many.frag # found chain 1ynbA in training set T0287 166 :ANLKTIEQY 1ynbA 111 :PDFSDVEVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29708 # 1xrjA.166.212 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 166 :ANLKTIEQY 1xrjA 213 :DNLVAINLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29709 # 2ex0A.166.181 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 166 :ANLKTIEQY 2ex0A 206 :EKAEFLQPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29710 # 1wa5C.166.77 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 166 :ANLKTIEQY 1wa5C 78 :LPANNVELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29711 # 1auoA.166.78 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 166 :ANLKTIEQY 1auoA 79 :ISLEELEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29712 # 1vjuA.166.144 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 166 :ANLKTIEQY 1vjuA 145 :AVEEDCRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29713 # 1ro7A.166.106 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 166 :ANLKTIEQY 1ro7A 107 :DFFKQLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29714 # 2exrA.166.449 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 166 :ANLKTIEQY 2exrA 450 :AKVSSVEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29715 # 1vliA.166.263 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 166 :ANLKTIEQY 1vliA 252 :LNPDELKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29716 # 1xdnA.166.75 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 166 :ANLKTIEQY 1xdnA 123 :GYHILIDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29717 # 2a2mA.166.144 read from T0287.t06.many.frag # found chain 2a2mA in template set Warning: unaligning (T0287)A166 (2a2mA)I133 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2a2mA)P134 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQY 2a2mA 135 :GTDIKDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=29718 # 1g5aA.166.109 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 166 :A 1g5aA 110 :G T0287 168 :LKTIEQY 1g5aA 112 :LKGLKDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29720 # 1v0wA.166.383 read from T0287.t06.many.frag # found chain 1v0wA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)S391 T0287 167 :NLKTIEQY 1v0wA 392 :QIKSLSEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29721 # 1e4fT.166.164 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 166 :ANLKTIEQY 1e4fT 165 :VPLKVYEMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29722 # 1i60A.166.255 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 166 :ANLKTIEQY 1i60A 256 :TAEEAIQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29723 # 2fb5A.166.44 read from T0287.t06.many.frag # found chain 2fb5A in template set T0287 166 :ANLKTIEQY 2fb5A 45 :CKMEDIHHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29724 # 1dmgA.166.26 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 166 :ANLKTIEQY 1dmgA 28 :PNYDVMWRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29725 # 1rcwA.166.109 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 166 :ANLKTIEQY 1rcwA 110 :EPSEAAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29726 # 2fb0A.166.68 read from T0287.t06.many.frag # found chain 2fb0A in template set T0287 166 :ANLKTIEQY 2fb0A 66 :EKTAHFAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29727 # 1t8kA.166.59 read from T0287.t06.many.frag # found chain 1t8kA in training set T0287 166 :ANLKTIEQY 1t8kA 60 :EKITTVQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29728 # 1wwpA.166.97 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 166 :ANLKTIEQY 1wwpA 98 :AIFRRLPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29729 # 1josA.167.66 read from T0287.t06.many.frag # found chain 1josA in training set T0287 167 :NLKTIEQYN 1josA 67 :GMKGLEKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29730 # 1gw5S.167.79 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 167 :NLKTIEQYN 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29731 # 1xg8A.167.23 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 167 :NL 1xg8A 15 :NA T0287 170 :TIEQYN 1xg8A 18 :TSKDIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29733 # 1t77A.167.320 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 167 :NLKTIEQYN 1t77A 2396 :WAKTSEEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29734 # 1vjuA.167.145 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 167 :NLKTIEQYN 1vjuA 146 :VEEDCRDFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29735 # 1rttA.167.58 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 167 :NLKTIEQYN 1rttA 59 :FPPAVERFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29736 # 1ifqA.167.36 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 167 :NLKTIEQYN 1ifqA 26 :SGRDLQQYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29737 # 1auoA.167.79 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 167 :NLKTIEQYN 1auoA 80 :SLEELEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29738 # 1e0tA.167.320 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29739 # 2ak3A.167.167 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 167 :NLKTIEQYN 2ak3A 167 :VVKRLKAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29740 # 1uf3A.167.16 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 167 :NLKTIEQYN 1uf3A 17 :DLEALEKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29741 # 2exrA.167.450 read from T0287.t06.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)N167 (2exrA)K451 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2exrA 452 :VSSVEKMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29742 # 1wa5C.167.78 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 167 :NLKTIEQYN 1wa5C 79 :PANNVELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29743 # 1eokA.167.60 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 167 :NLKTIEQYN 1eokA 61 :SFKSYKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29744 # 1vliA.167.264 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 167 :NLKTIEQYN 1vliA 253 :NPDELKEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29745 # 1ynbA.167.111 read from T0287.t06.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)I171 (1ynbA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 167 :NLKT 1ynbA 112 :DFSD T0287 172 :EQYN 1ynbA 117 :EVYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29747 # 1xrjA.167.213 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 167 :NLKTIEQYN 1xrjA 214 :NLVAINLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29748 # 2a2mA.167.145 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 167 :NLKTIEQYN 2a2mA 134 :PGTDIKDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29749 # 1e4fT.167.165 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 167 :NLKTIEQYN 1e4fT 166 :PLKVYEMFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29750 # 1xdnA.167.76 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 167 :NLKTIEQYN 1xdnA 124 :YHILIDEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29751 # 1i60A.167.256 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 167 :NLKTIEQYN 1i60A 257 :AEEAIQTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29752 # 1tr9A.167.310 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 167 :NLKTIEQYN 1tr9A 310 :RLERWQQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29753 # 1ryiA.167.283 read from T0287.t06.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 168 :LKTIEQYN 1ryiA 272 :LGGLESVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=29754 # 1wwpA.167.98 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 167 :NLKTIEQYN 1wwpA 99 :IFRRLPDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29755 # 2cxaA.167.216 read from T0287.t06.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)N167 (2cxaA)C200 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2cxaA 201 :EIPRRDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29756 # 1ro7A.167.107 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 167 :NLKTIEQYN 1ro7A 108 :FFKQLKDFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29757 # 1itxA.167.143 read from T0287.t06.many.frag # found chain 1itxA in training set T0287 167 :NLKTIEQYN 1itxA 176 :TAATREVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29758 # 7a3hA.167.240 read from T0287.t06.many.frag # found chain 7a3hA in training set T0287 167 :NLKTIEQYN 7a3hA 241 :FLDEAQVWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29759 # 1wzdA.167.164 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 167 :NLKTIEQYN 1wzdA 165 :GIAKLKVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29760 # 2fb5A.167.45 read from T0287.t06.many.frag # found chain 2fb5A in template set T0287 167 :NLKTIEQYN 2fb5A 46 :KMEDIHHML Number of specific fragments extracted= 1 number of extra gaps= 0 total=29761 # 1ifqA.168.37 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 168 :LKTIEQYND 1ifqA 27 :GRDLQQYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29762 # 1josA.168.67 read from T0287.t06.many.frag # found chain 1josA in training set T0287 168 :LKTIEQYND 1josA 68 :MKGLEKASP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29763 # 1ro7A.168.108 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 168 :LKTIEQYND 1ro7A 109 :FKQLKDFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29764 # 1xg8A.168.24 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 168 :LKTIEQYND 1xg8A 16 :APTSKDIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29765 # 1gw5S.168.80 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 168 :LKTIEQYND 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29766 # 1vjuA.168.146 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 168 :LKTIEQYND 1vjuA 147 :EEDCRDFHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29767 # 1vliA.168.265 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 168 :LKTIEQYND 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29768 # 2a2mA.168.146 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 168 :LKTIEQYND 2a2mA 135 :GTDIKDYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29769 # 1wwpA.168.99 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 168 :LKTIEQYND 1wwpA 100 :FRRLPDYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29770 # 1rttA.168.59 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 168 :LKTIEQYND 1rttA 60 :PPAVERFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29771 # 1auoA.168.80 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 168 :LKTIEQYND 1auoA 81 :LEELEVSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29772 # 1t77A.168.321 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 168 :LKTIEQYND 1t77A 2397 :AKTSEEFVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29773 # 1ynbA.168.112 read from T0287.t06.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)I171 (1ynbA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 168 :LKT 1ynbA 113 :FSD T0287 172 :EQYND 1ynbA 117 :EVYVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29775 # 2exrA.168.451 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 168 :LKTIEQYND 2exrA 452 :VSSVEKMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29776 # 1tr9A.168.311 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 168 :LKTIEQYND 1tr9A 311 :LERWQQASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29777 # 1uf3A.168.17 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 168 :LKTIEQYND 1uf3A 18 :LEALEKFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29778 # 1xdnA.168.77 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 168 :LKTIEQYND 1xdnA 125 :HILIDEFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29779 # 1f5qB.168.225 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 168 :LKTIEQYND 1f5qB 226 :KEELHQCCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29780 # 1e0tA.168.321 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI T0287 176 :D 1e0tA 330 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=29782 # 1eokA.168.61 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 168 :LKTIEQYND 1eokA 62 :FKSYKDLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29783 # 2cxaA.168.217 read from T0287.t06.many.frag # found chain 2cxaA in template set T0287 168 :LKTIEQYND 2cxaA 201 :EIPRRDYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29784 # 2ak3A.168.168 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 168 :LKTIEQYND 2ak3A 168 :VKRLKAYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29785 # 1xrjA.168.214 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 168 :LKTIEQYND 1xrjA 215 :LVAINLIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29786 # 1wa5C.168.79 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 168 :LKTIEQYND 1wa5C 80 :ANNVELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29787 # 1wzdA.168.165 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 168 :LKTIEQYND 1wzdA 166 :IAKLKVYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29788 # 2fb0A.168.70 read from T0287.t06.many.frag # found chain 2fb0A in template set T0287 168 :LKTIEQYND 2fb0A 68 :TAHFAQYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29789 # 1e4fT.168.166 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 168 :LKTIEQYND 1e4fT 167 :LKVYEMFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29790 # 1i60A.168.257 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 168 :LKTIEQYND 1i60A 258 :EEAIQTAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29791 # 1xqwA.168.274 read from T0287.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)T170 (1xqwA)D277 because D (zeta) conformation "forbidden" or filtered. T0287 168 :LK 1xqwA 275 :WE T0287 171 :IEQYND 1xqwA 278 :REGYNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29793 # 2bgcA.168.211 read from T0287.t06.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)Y174 (2bgcA)Y217 because G (3-10) conformation "forbidden" or filtered. T0287 168 :LKTIEQ 2bgcA 211 :LDYLKR T0287 175 :ND 2bgcA 218 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29795 # 1ifqA.169.38 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 169 :KTIEQYNDY 1ifqA 28 :RDLQQYQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29796 # 1ro7A.169.109 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 169 :KTIEQYNDY 1ro7A 110 :KQLKDFNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29797 # 1vjuA.169.147 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 169 :KTIEQYNDY 1vjuA 148 :EDCRDFHQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29798 # 1josA.169.68 read from T0287.t06.many.frag # found chain 1josA in training set T0287 169 :KTIEQYNDY 1josA 69 :KGLEKASPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29799 # 2a2mA.169.147 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 169 :KTIEQYNDY 2a2mA 136 :TDIKDYADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29800 # 1xdnA.169.78 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 169 :KTIEQYNDY 1xdnA 126 :ILIDEFTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29801 # 1wwpA.169.100 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 169 :KTIEQYNDY 1wwpA 101 :RRLPDYARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29802 # 1auoA.169.81 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 169 :KTIEQYNDY 1auoA 82 :EELEVSAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29803 # 1vliA.169.266 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 169 :KTIEQYNDY 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29804 # 1f5qB.169.226 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 169 :KTIEQYNDY 1f5qB 227 :EELHQCCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29805 # 1xqwA.169.275 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 169 :KTIEQYNDY 1xqwA 276 :EDREGYNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29806 # 1xg8A.169.25 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 169 :KTIEQYNDY 1xg8A 17 :PTSKDIYDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29807 # 1rttA.169.60 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 169 :KTIEQYNDY 1rttA 61 :PAVERFREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29808 # 1gw5S.169.81 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 169 :KTIEQYNDY 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29809 # 1qwtA.169.230 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 169 :KTIEQYNDY 1qwtA 403 :LTSDQYKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29810 # 1tr9A.169.312 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 169 :KTIEQYNDY 1tr9A 312 :ERWQQASAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29811 # 1t77A.169.322 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 169 :KTIEQYNDY 1t77A 2398 :KTSEEFVHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29812 # 1uf3A.169.18 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 169 :KTIEQYNDY 1uf3A 19 :EALEKFVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29813 # 1wzdA.169.166 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 169 :KTIEQYNDY 1wzdA 167 :AKLKVYKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29814 # 2f1rA.169.146 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 169 :KTIEQYNDY 2f1rA 147 :DEVERIAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29815 # 1ynbA.169.113 read from T0287.t06.many.frag # found chain 1ynbA in training set T0287 169 :KTIEQYNDY 1ynbA 114 :SDVEVYVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29816 # 2exrA.169.452 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 169 :KTIEQYNDY 2exrA 453 :SSVEKMVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29817 # 1xrjA.169.215 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 169 :KTIEQYNDY 1xrjA 216 :VAINLIVQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29818 # 1lvaA.169.198 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 169 :KTIEQYNDY 1lvaA 575 :QALGEAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29819 # 1e4fT.169.167 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 169 :KTIEQYNDY 1e4fT 168 :KVYEMFYNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29820 # 1wduA.169.127 read from T0287.t06.many.frag # found chain 1wduA in template set T0287 169 :KTIEQYNDY 1wduA 131 :KPIESYLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29821 # 1eokA.169.62 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 169 :KTIEQYNDY 1eokA 63 :KSYKDLDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29822 # 1qnrA.169.138 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 169 :KTIEQYNDY 1qnrA 139 :AAQTQYRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29823 # 1z7aA.169.226 read from T0287.t06.many.frag # found chain 1z7aA in template set T0287 169 :KTIEQYNDY 1z7aA 227 :NNGEQFFQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29824 # 2cxaA.169.218 read from T0287.t06.many.frag # found chain 2cxaA in template set T0287 169 :KTIEQYNDY 2cxaA 202 :IPRRDYLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29825 # 1ifqA.170.39 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 170 :TIEQYNDYV 1ifqA 29 :DLQQYQSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29826 # 1f5qB.170.227 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 170 :TIEQYNDYV 1f5qB 228 :ELHQCCDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29827 # 1vjuA.170.148 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 170 :TIEQYNDYV 1vjuA 149 :DCRDFHQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29828 # 1ro7A.170.110 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 170 :TIEQYNDYV 1ro7A 111 :QLKDFNAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29829 # 2a2mA.170.148 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 170 :TIEQYNDYV 2a2mA 137 :DIKDYADYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29830 # 1xqwA.170.276 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 170 :TIEQYNDYV 1xqwA 277 :DREGYNKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29831 # 1wwpA.170.101 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 170 :TIEQYNDYV 1wwpA 102 :RLPDYARLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29832 # 1josA.170.69 read from T0287.t06.many.frag # found chain 1josA in training set T0287 170 :TIEQYNDYV 1josA 70 :GLEKASPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29833 # 1qwtA.170.231 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 170 :TIEQYNDYV 1qwtA 404 :TSDQYKAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29834 # 1xdnA.170.79 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 170 :TIEQYNDYV 1xdnA 127 :LIDEFTAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29835 # 1auoA.170.82 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 170 :TIEQYNDYV 1auoA 83 :ELEVSAKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29836 # 1vliA.170.267 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 170 :TIEQYNDYV 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29837 # 1wzdA.170.167 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 170 :TIEQYNDYV 1wzdA 168 :KLKVYKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29838 # 1wduA.170.128 read from T0287.t06.many.frag # found chain 1wduA in template set T0287 170 :TIEQYNDYV 1wduA 132 :PIESYLEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29839 # 1xg8A.170.26 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 170 :TIEQYNDYV 1xg8A 18 :TSKDIYDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29840 # 1tr9A.170.313 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 170 :TIEQYNDYV 1tr9A 313 :RWQQASANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29841 # 1qnrA.170.139 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 170 :TIEQYNDYV 1qnrA 140 :AQTQYRKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29842 # 1lvaA.170.199 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 170 :TIEQYNDYV 1lvaA 576 :ALGEAREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29843 # 1wdaA.170.540 read from T0287.t06.many.frag # found chain 1wdaA in template set T0287 170 :TIEQYNDYV 1wdaA 534 :TLREHNSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29844 # 1rttA.170.61 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 170 :TIEQYNDYV 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29845 # 1jl1A.170.128 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 170 :TIEQYNDYV 1jl1A 129 :ENERADELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29846 # 1ynbA.170.114 read from T0287.t06.many.frag # found chain 1ynbA in training set T0287 170 :TIEQYNDYV 1ynbA 115 :DVEVYVSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29847 # 1wouA.170.44 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 170 :TIEQYNDYV 1wouA 45 :DCVQAEPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29848 # 2f1rA.170.147 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 170 :TIEQYNDYV 2f1rA 148 :EVERIAEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29849 # 1ntyA.170.294 read from T0287.t06.many.frag # found chain 1ntyA in training set T0287 170 :TIEQYNDYV 1ntyA 1519 :NKQDWIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29850 # 1tqhA.170.229 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 170 :TIEQYNDYV 1tqhA 230 :EKDQLHEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29851 # 1nznA.170.88 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 170 :TIEQYNDYV 1nznA 89 :EYEKALKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29852 # 1oltA.170.80 read from T0287.t06.many.frag # found chain 1oltA in template set T0287 170 :TIEQYNDYV 1oltA 81 :KADQYLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29853 # 1xrjA.170.216 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 170 :TIEQYNDYV 1xrjA 217 :AINLIVQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29854 # 2cxaA.170.219 read from T0287.t06.many.frag # found chain 2cxaA in template set T0287 170 :TIEQYNDYV 2cxaA 203 :PRRDYLNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29855 # 1f5qB.171.228 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 171 :IEQYNDYVR 1f5qB 229 :LHQCCDLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29856 # 1ifqA.171.40 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 171 :IEQYNDYVR 1ifqA 30 :LQQYQSQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29857 # 1vjuA.171.149 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 171 :IEQYNDYVR 1vjuA 150 :CRDFHQVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29858 # 2a2mA.171.149 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 171 :IEQYNDYVR 2a2mA 138 :IKDYADYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29859 # 1ro7A.171.111 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 171 :IEQYNDYVR 1ro7A 112 :LKDFNAYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29860 # 1xqwA.171.277 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 171 :IEQYNDYVR 1xqwA 278 :REGYNKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29861 # 1wwpA.171.102 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 171 :IEQYNDYVR 1wwpA 103 :LPDYARLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=29862 # 1qwtA.171.232 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 171 :IEQYNDYVR 1qwtA 405 :SDQYKAYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29863 # 1auoA.171.83 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 171 :IEQYNDYVR 1auoA 84 :LEVSAKMVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29864 # 1wzdA.171.168 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 171 :IEQYNDYVR 1wzdA 169 :LKVYKDEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29865 # 1xdnA.171.80 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 171 :IEQYNDYVR 1xdnA 128 :IDEFTAQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29866 # 1josA.171.70 read from T0287.t06.many.frag # found chain 1josA in training set T0287 171 :IEQYNDYVR 1josA 71 :LEKASPYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29867 # 1lvaA.171.200 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 171 :IEQYNDYVR 1lvaA 577 :LGEAREVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29868 # 1jl1A.171.129 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 171 :IEQYNDYVR 1jl1A 130 :NERADELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29869 # 1vliA.171.268 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 171 :IEQYNDYVR 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29870 # 1b3tA.171.111 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 171 :IEQYNDYVR 1b3tA 572 :AEVLKDAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29871 # 1wduA.171.129 read from T0287.t06.many.frag # found chain 1wduA in template set T0287 171 :IEQYNDYVR 1wduA 133 :IESYLEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29872 # 1nznA.171.89 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 171 :IEQYNDYVR 1nznA 90 :YEKALKYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29873 # 1xodA.171.100 read from T0287.t06.many.frag # found chain 1xodA in training set T0287 171 :IEQYNDYVR 1xodA 106 :ARAFDRGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29874 # 2f1rA.171.148 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 171 :IEQYNDYVR 2f1rA 149 :VERIAEFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29875 # 1ntyA.171.295 read from T0287.t06.many.frag # found chain 1ntyA in training set T0287 171 :IEQYNDYVR 1ntyA 1520 :KQDWIKHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29876 # 2b61A.171.362 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 171 :IEQYNDYVR 2b61A 344 :YDQFEKRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29877 # 1xrjA.171.217 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 171 :IEQYNDYVR 1xrjA 218 :INLIVQHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29878 # 1qnrA.171.140 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 171 :IEQYNDYVR 1qnrA 141 :QTQYRKYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29879 # 1oltA.171.81 read from T0287.t06.many.frag # found chain 1oltA in template set T0287 171 :IEQYNDYVR 1oltA 82 :ADQYLDALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29880 # 1wouA.171.45 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 171 :IEQYNDYVR 1wouA 46 :CVQAEPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29881 # 1ynbA.171.115 read from T0287.t06.many.frag # found chain 1ynbA in training set T0287 171 :IEQYNDYVR 1ynbA 116 :VEVYVSDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29882 # 1tqhA.171.230 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 171 :IEQYNDYVR 1tqhA 231 :KDQLHEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29883 # 1w9cA.171.301 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 171 :IEQYNDYVR 1w9cA 1008 :IPAFKEHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29884 # 1l5oA.171.209 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 171 :IEQYNDYVR 1l5oA 210 :IDNKVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29885 # 1f5qB.172.229 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 172 :EQYNDYVRD 1f5qB 230 :HQCCDLVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29886 # 1ifqA.172.41 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 172 :EQYNDYVRD 1ifqA 31 :QQYQSQAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29887 # 1xqwA.172.278 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 172 :EQYNDYVRD 1xqwA 279 :EGYNKLLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29888 # 2a2mA.172.150 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 172 :EQYNDYVRD 2a2mA 139 :KDYADYEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29889 # 1vjuA.172.150 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 172 :EQYNDYVRD 1vjuA 151 :RDFHQVAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29890 # 1qwtA.172.233 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 172 :EQYNDYVRD 1qwtA 406 :DQYKAYLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29891 # 1wzdA.172.169 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 172 :EQYNDYVRD 1wzdA 170 :KVYKDEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29892 # 1jl1A.172.130 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 172 :EQYNDYVRD 1jl1A 131 :ERADELARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29893 # 1auoA.172.84 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 172 :EQYNDYVRD 1auoA 85 :EVSAKMVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29894 # 1b3tA.172.112 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 172 :EQYNDYVRD 1b3tA 573 :EVLKDAIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29895 # 1nznA.172.90 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 172 :EQYNDYVRD 1nznA 91 :EKALKYVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29896 # 1ro7A.172.112 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 172 :EQYNDYVRD 1ro7A 113 :KDFNAYFKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29897 # 1wwpA.172.103 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 172 :EQYNDYVRD 1wwpA 104 :PDYARLMEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29898 # 1lvaA.172.201 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 172 :EQYNDYVRD 1lvaA 578 :GEAREVIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29899 # 1uddA.172.110 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 172 :EQYNDYVRD 1uddA 111 :SAYMDFMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29900 # 1xdnA.172.81 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 172 :EQYNDYVRD 1xdnA 129 :DEFTAQIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29901 # 1l5oA.172.210 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 172 :EQYNDYVRD 1l5oA 211 :DNKVDVVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29902 # 2f1rA.172.149 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 172 :EQYNDYVRD 2f1rA 150 :ERIAEFILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29903 # 1josA.172.71 read from T0287.t06.many.frag # found chain 1josA in training set T0287 172 :EQYNDYVRD 1josA 72 :EKASPYIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29904 # 1z77A.172.125 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 172 :EQYNDYVRD 1z77A 126 :RVFFDFVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29905 # 1w9cA.172.302 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 172 :EQYNDYVRD 1w9cA 1009 :PAFKEHLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29906 # 2b61A.172.363 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 172 :EQYNDYVRD 2b61A 345 :DQFEKRIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29907 # 1o6dA.172.80 read from T0287.t06.many.frag # found chain 1o6dA in training set T0287 172 :EQYNDYVRD 1o6dA 79 :EEFADFLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29908 # 1xodA.172.101 read from T0287.t06.many.frag # found chain 1xodA in training set T0287 172 :EQYNDYVRD 1xodA 107 :RAFDRGIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29909 # 1wdaA.172.542 read from T0287.t06.many.frag # found chain 1wdaA in template set T0287 172 :EQYNDYVRD 1wdaA 536 :REHNSFVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=29910 # 2gmfA.172.103 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 172 :EQYNDYVRD 2gmfA 104 :ESFKENLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29911 # 1qnrA.172.141 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 172 :EQYNDYVRD 1qnrA 142 :TQYRKYVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29912 # 1vliA.172.269 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 172 :EQYNDYVRD 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29913 # 1tqhA.172.231 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 172 :EQYNDYVRD 1tqhA 232 :DQLHEDIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29914 # 1wouA.172.46 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 172 :EQYNDYVRD 1wouA 47 :VQAEPVVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29915 # 1f5qB.173.230 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 173 :QYNDYVRDL 1f5qB 231 :QCCDLVDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29916 # 1ifqA.173.42 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 173 :QYNDYVRDL 1ifqA 32 :QYQSQAKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29917 # 1qwtA.173.234 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 173 :QYNDYVRDL 1qwtA 407 :QYKAYLQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29918 # 1xqwA.173.279 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 173 :QYNDYVRDL 1xqwA 280 :GYNKLLSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29919 # 1b3tA.173.113 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 173 :QYNDYVRDL 1b3tA 574 :VLKDAIKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29920 # 1vjuA.173.151 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 173 :QYNDYVRDL 1vjuA 152 :DFHQVAQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29921 # 1jl1A.173.131 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 173 :QYNDYVRDL 1jl1A 132 :RADELARAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29922 # 1auoA.173.85 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 173 :QYNDYVRDL 1auoA 86 :VSAKMVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29923 # 2a2mA.173.151 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 173 :QYNDYVRDL 2a2mA 140 :DYADYEAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29924 # 1wzdA.173.170 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 173 :QYNDYVRDL 1wzdA 171 :VYKDEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29925 # 1lvaA.173.202 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 173 :QYNDYVRDL 1lvaA 579 :EAREVIKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29926 # 1z77A.173.126 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 173 :QYNDYVRDL 1z77A 127 :VFFDFVREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29927 # 2b61A.173.364 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 173 :QYNDYVRDL 2b61A 346 :QFEKRIRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29928 # 1nznA.173.91 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 173 :QYNDYVRDL 1nznA 92 :KALKYVRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29929 # 2gmfA.173.104 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 173 :QYNDYVRDL 2gmfA 105 :SFKENLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29930 # 2f1rA.173.150 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 173 :QYNDYVRDL 2f1rA 151 :RIAEFILSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29931 # 1wwpA.173.104 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 173 :QYNDYVRDL 1wwpA 105 :DYARLMEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29932 # 1ro7A.173.113 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 173 :QYNDYVRDL 1ro7A 114 :DFNAYFKFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29933 # 1l5oA.173.211 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 173 :QYNDYVRDL 1l5oA 212 :NKVDVVRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29934 # 1w9cA.173.303 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 173 :QYNDYVRDL 1w9cA 1010 :AFKEHLRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29935 # 1xdnA.173.82 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 173 :QYNDYVRDL 1xdnA 130 :EFTAQIRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29936 # 1wouA.173.47 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 173 :QYNDYVRDL 1wouA 48 :QAEPVVREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29937 # 1xodA.173.102 read from T0287.t06.many.frag # found chain 1xodA in training set T0287 173 :QYNDYVRDL 1xodA 108 :AFDRGIRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29938 # 1izmA.173.155 read from T0287.t06.many.frag # found chain 1izmA in template set T0287 173 :QYNDYVRDL 1izmA 154 :EIIEYVRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29939 # 2d0tA.173.304 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 173 :QYNDY 2d0tA 302 :AHRNF T0287 180 :DL 2d0tA 309 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29941 # 1josA.173.72 read from T0287.t06.many.frag # found chain 1josA in training set T0287 173 :QYNDYVRDL 1josA 73 :KASPYIRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29942 # 1tqhA.173.232 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 173 :QYNDYVRDL 1tqhA 233 :QLHEDIYAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29943 # 1xrjA.173.219 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 173 :QYNDYVRDL 1xrjA 220 :LIVQHIQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29944 # 1jl0A.173.262 read from T0287.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)Y174 (1jl0A)Y264 because G (3-10) conformation "forbidden" or filtered. T0287 173 :Q 1jl0A 263 :S T0287 175 :NDYVRDL 1jl0A 265 :DDLIRKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29946 # 1vliA.173.270 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 173 :QYNDYVRDL 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29947 # 1f5qB.174.231 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 174 :YNDYVRDLL 1f5qB 232 :CCDLVDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29948 # 1ifqA.174.43 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 174 :YNDYVRDLL 1ifqA 33 :YQSQAKQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29949 # 1qwtA.174.235 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 174 :YNDYVRDLL 1qwtA 408 :YKAYLQDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29950 # 1b3tA.174.114 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 174 :YNDYVRDLL 1b3tA 575 :LKDAIKDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29951 # 1jl1A.174.132 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 174 :YNDYVRDLL 1jl1A 133 :ADELARAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29952 # 1z77A.174.127 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 174 :YNDYVRDLL 1z77A 128 :FFDFVREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29953 # 1xqwA.174.280 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 174 :YNDYVRDLL 1xqwA 281 :YNKLLSDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29954 # 1nznA.174.92 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 174 :YNDYVRDLL 1nznA 93 :ALKYVRGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29955 # 1vjuA.174.152 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 174 :YNDYVRDLL 1vjuA 153 :FHQVAQDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29956 # 2b61A.174.365 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 174 :YNDYVRDLL 2b61A 347 :FEKRIRDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29957 # 2gmfA.174.105 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 174 :YNDYVRDLL 2gmfA 106 :FKENLKDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29958 # 1wzdA.174.171 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 174 :YNDYVRDLL 1wzdA 172 :YKDEYREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29959 # 1lvaA.174.203 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 174 :YNDYVRDLL 1lvaA 580 :AREVIKNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29960 # 1auoA.174.86 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 174 :YNDYVRDLL 1auoA 87 :SAKMVTDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29961 # 2f1rA.174.151 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 174 :YNDYVRDLL 2f1rA 152 :IAEFILSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29962 # 1l5oA.174.212 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 174 :YNDYVRDLL 1l5oA 213 :KVDVVRRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29963 # 1w9cA.174.304 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 174 :YNDYVRDLL 1w9cA 1011 :FKEHLRDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29964 # 1wouA.174.48 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 174 :YNDYVRDLL 1wouA 49 :AEPVVREGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29965 # 1l5aA.174.297 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 174 :YNDYVRDLL 1l5aA 298 :SGQAIRSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29966 # 2a2mA.174.152 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 174 :YNDYVRDLL 2a2mA 141 :YADYEAYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29967 # 1uddA.174.112 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 174 :YNDYVRDLL 1uddA 113 :YMDFMLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29968 # 1qw9A.174.263 read from T0287.t06.many.frag # found chain 1qw9A in training set T0287 174 :YNDYVRDLL 1qw9A 264 :MDDFIRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29969 # 2d0tA.174.305 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 174 :YNDY 2d0tA 303 :HRNF T0287 180 :DLL 2d0tA 309 :SLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29971 # 1xdnA.174.83 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 174 :YNDYVRDLL 1xdnA 131 :FTAQIRILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29972 # 1o6dA.174.82 read from T0287.t06.many.frag # found chain 1o6dA in training set T0287 174 :YNDYVRDLL 1o6dA 81 :FADFLKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29973 # 1izmA.174.156 read from T0287.t06.many.frag # found chain 1izmA in template set T0287 174 :YNDYVRDLL 1izmA 155 :IIEYVRTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29974 # 1uh4A.174.444 read from T0287.t06.many.frag # found chain 1uh4A in template set T0287 174 :YNDYVRDLL 1uh4A 445 :FDSWLRGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29975 # 1ro7A.174.114 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 174 :YNDYVRDLL 1ro7A 115 :FNAYFKFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29976 # 1x38A.174.11 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 174 :YNDYVRDLL 1x38A 12 :VEDRVADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29977 # 1jl0A.174.263 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 174 :YNDYVRDLL 1jl0A 264 :YDDLIRKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29978 # 1f5qB.175.232 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 175 :NDYVRDLLM 1f5qB 233 :CDLVDIAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29979 # 1ifqA.175.44 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 175 :NDYVRDLLM 1ifqA 34 :QSQAKQLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29980 # 1b3tA.175.115 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 175 :NDYVRDLLM 1b3tA 576 :KDAIKDLVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29981 # 1xqwA.175.281 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 175 :NDYVRDLLM 1xqwA 282 :NKLLSDFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29982 # 2gmfA.175.106 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 175 :NDYVRDLLM 2gmfA 107 :KENLKDFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29983 # 1qwtA.175.236 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 175 :NDYVRDLLM 1qwtA 409 :KAYLQDLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29984 # 1z77A.175.128 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 175 :NDYVRDLLM 1z77A 129 :FDFVREKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29985 # 1jl1A.175.133 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 175 :NDYVRDLLM 1jl1A 134 :DELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29986 # 1vjuA.175.153 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 175 :NDYVRDLLM 1vjuA 154 :HQVAQDLCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29987 # 1nznA.175.93 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 175 :NDYVRDLLM 1nznA 94 :LKYVRGLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29988 # 1wzdA.175.172 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 175 :NDYVRDLLM 1wzdA 173 :KDEYREKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29989 # 2b61A.175.366 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 175 :NDYVRDLLM 2b61A 348 :EKRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29990 # 1lvaA.175.204 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 175 :NDYVRDLLM 1lvaA 581 :REVIKNLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29991 # 1wouA.175.49 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 175 :NDYVRDLLM 1wouA 50 :EPVVREGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29992 # 1x38A.175.12 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 175 :NDYVRDLLM 1x38A 13 :EDRVADLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29993 # 1auoA.175.87 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 175 :NDYVRDLLM 1auoA 88 :AKMVTDLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29994 # 1w9cA.175.305 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 175 :NDYVRDLLM 1w9cA 1012 :KEHLRDFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29995 # 1l5aA.175.298 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 175 :NDYVRDLLM 1l5aA 299 :GQAIRSLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29996 # 1l5oA.175.213 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 175 :NDYVRDLLM 1l5oA 214 :VDVVRRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29997 # 2f1rA.175.152 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 175 :NDYVRDLLM 2f1rA 153 :AEFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29998 # 1izmA.175.157 read from T0287.t06.many.frag # found chain 1izmA in template set T0287 175 :NDYVRDLLM 1izmA 156 :IEYVRTIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29999 # 1xrjA.175.221 read from T0287.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0287)M183 because last residue in template chain is (1xrjA)N230 T0287 175 :NDYVRDLL 1xrjA 222 :VQHIQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30000 # 1tqhA.175.234 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 175 :NDYVRDLLM 1tqhA 235 :HEDIYAFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30001 # 2d0tA.175.306 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)M183 (2d0tA)S312 because G (3-10) conformation "forbidden" or filtered. T0287 175 :NDY 2d0tA 304 :RNF T0287 180 :DLL 2d0tA 309 :SLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30003 # 1tr9A.175.318 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 175 :NDYVRDLLM 1tr9A 318 :SANMQRLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30004 # 1i60A.175.264 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 175 :NDYVRDLLM 1i60A 265 :KKTTVDVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30005 # 1uddA.175.113 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 175 :NDYVRDLLM 1uddA 114 :MDFMLATAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30006 # 1o6dA.175.83 read from T0287.t06.many.frag # found chain 1o6dA in training set T0287 175 :NDYVRDLLM 1o6dA 82 :ADFLKDLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30007 # 1llfA.175.358 read from T0287.t06.many.frag # found chain 1llfA in training set Warning: unaligning (T0287)L182 (1llfA)F366 because D (zeta) conformation "forbidden" or filtered. T0287 175 :NDYVRDL 1llfA 359 :RAYFKQS T0287 183 :M 1llfA 367 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=30009 # 1qw9A.175.264 read from T0287.t06.many.frag # found chain 1qw9A in training set T0287 175 :NDYVRDLLM 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30010 # 1ifqA.176.45 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 176 :DYVRDLLMK 1ifqA 35 :SQAKQLFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30011 # 1f5qB.176.233 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 176 :DYVRDLLMK 1f5qB 234 :DLVDIAIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30012 # 1b3tA.176.116 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 176 :DYVRDLLMK 1b3tA 577 :DAIKDLVMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30013 # 2gmfA.176.107 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 176 :DYVRDLLMK 2gmfA 108 :ENLKDFLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30014 # 1x38A.176.13 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 176 :DYVRDLLMK 1x38A 14 :DRVADLLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30015 # 1nznA.176.94 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 176 :DYVRDLLMK 1nznA 95 :KYVRGLLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30016 # 1wzdA.176.173 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 176 :DYVRDLLMK 1wzdA 174 :DEYREKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30017 # 1xqwA.176.282 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 176 :DYVRDLLMK 1xqwA 283 :KLLSDFILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30018 # 1qwtA.176.237 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 176 :DYVRDLLMK 1qwtA 410 :AYLQDLVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30019 # 1jl1A.176.134 read from T0287.t06.many.frag # found chain 1jl1A in training set Warning: unaligning (T0287)K184 (1jl1A)N143 because D (zeta) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 1jl1A 135 :ELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30020 # 1z77A.176.129 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 176 :DYVRDLLMK 1z77A 130 :DFVREKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30021 # 1vjuA.176.154 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 176 :DYVRDLLMK 1vjuA 155 :QVAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30022 # 2b61A.176.367 read from T0287.t06.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 2b61A 349 :KRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30023 # 1lvaA.176.205 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 176 :DYVRDLLMK 1lvaA 582 :EVIKNLAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=30024 # 1wouA.176.50 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 176 :DYVRDLLMK 1wouA 51 :PVVREGLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30025 # 1tr9A.176.319 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 176 :DYVRDLLMK 1tr9A 319 :ANMQRLIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30026 # 1l5aA.176.299 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 176 :DYVRDLLMK 1l5aA 300 :QAIRSLYLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30027 # 1o6dA.176.84 read from T0287.t06.many.frag # found chain 1o6dA in training set T0287 176 :DYVRDLLMK 1o6dA 83 :DFLKDLEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30028 # 2d0tA.176.307 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 176 :DY 2d0tA 305 :NF T0287 180 :DLLMK 2d0tA 309 :SLESN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30030 # 1w9cA.176.306 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 176 :DYVRDLLMK 1w9cA 1013 :EHLRDFLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30031 # 1uddA.176.114 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 176 :DYVRDLLMK 1uddA 115 :DFMLATAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30032 # 1tqhA.176.235 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 176 :DYVRDLLMK 1tqhA 236 :EDIYAFLES Number of specific fragments extracted= 1 number of extra gaps= 0 total=30033 # 1i60A.176.265 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 176 :DYVRDLLMK 1i60A 266 :KTTVDVVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30034 # 1auoA.176.88 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 176 :DYVRDLLMK 1auoA 89 :KMVTDLIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30035 # 1l5oA.176.214 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 176 :DYVRDLLMK 1l5oA 215 :DVVRRAIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30036 # 2f1rA.176.153 read from T0287.t06.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 176 :DYVRDLLM 2f1rA 154 :EFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30037 # 1llfA.176.359 read from T0287.t06.many.frag # found chain 1llfA in training set T0287 176 :DYVRDLLMK 1llfA 360 :AYFKQSFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30038 # 2arhA.176.171 read from T0287.t06.many.frag # found chain 2arhA in template set T0287 176 :DYVRDLLMK 2arhA 170 :KEFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30039 # 1ursA.176.216 read from T0287.t06.many.frag # found chain 1ursA in training set T0287 176 :DYVRDLLMK 1ursA 217 :TLMRDMVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30040 # 1yjsA.176.377 read from T0287.t06.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)K184 (1yjsA)N386 because D (zeta) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 1yjsA 378 :AIIGLVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30041 # 1ifqA.177.46 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 177 :YVRDLLMKF 1ifqA 36 :QAKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30042 # 1f5qB.177.234 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 177 :YVRDLLMKF 1f5qB 235 :LVDIAIVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30043 # 1b3tA.177.117 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 177 :YVRDLLMKF 1b3tA 578 :AIKDLVMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30044 # 1wzdA.177.174 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 177 :YVRDLLMKF 1wzdA 175 :EYREKLNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30045 # 2gmfA.177.108 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 177 :YVRDLLMKF 2gmfA 109 :NLKDFLLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30046 # 1xqwA.177.283 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 177 :YVRDLLMKF 1xqwA 284 :LLSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30047 # 1x38A.177.14 read from T0287.t06.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)K184 (1x38A)R22 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLM 1x38A 15 :RVADLLG T0287 185 :F 1x38A 23 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=30049 # 1qwtA.177.238 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 177 :YVRDLLMKF 1qwtA 411 :YLQDLVEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30050 # 1vjuA.177.155 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 177 :YVRDLLMKF 1vjuA 156 :VAQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30051 # 1z77A.177.130 read from T0287.t06.many.frag # found chain 1z77A in template set Warning: unaligning (T0287)K184 (1z77A)D138 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLM 1z77A 131 :FVREKLK T0287 185 :F 1z77A 139 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30053 # 1jl1A.177.135 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 177 :YVRDLLMKF 1jl1A 136 :LARAAAMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30054 # 2b61A.177.368 read from T0287.t06.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because last residue in template chain is (2b61A)N358 T0287 177 :YVRDLLM 2b61A 350 :RIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30055 # 1tqhA.177.236 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 177 :YVRDLLMKF 1tqhA 237 :DIYAFLESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30056 # 1n69A.177.58 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 177 :YVRDLLMKF 1n69A 57 :IAIQMMMHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30057 # 1nznA.177.95 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 177 :YVRDLLMKF 1nznA 96 :YVRGLLQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30058 # 1lvaA.177.206 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 177 :YVRDLLMKF 1lvaA 583 :VIKNLASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30059 # 1tr9A.177.320 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 177 :YVRDLLMKF 1tr9A 320 :NMQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30060 # 1wouA.177.51 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 177 :YVRDLLMKF 1wouA 52 :VVREGLKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30061 # 2b6cA.177.192 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 177 :YVRDLLMKF 2b6cA 190 :WVEELMKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30062 # 1q7eA.177.312 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 177 :YVRDLLMKF 1q7eA 313 :EIEKYTVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30063 # 1llfA.177.360 read from T0287.t06.many.frag # found chain 1llfA in training set T0287 177 :YVRDLLMKF 1llfA 361 :YFKQSFIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30064 # 1yjsA.177.378 read from T0287.t06.many.frag # found chain 1yjsA in template set T0287 177 :YVRDLLMKF 1yjsA 379 :IIGLVLKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30065 # 2arhA.177.172 read from T0287.t06.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 T0287 177 :YVRDLLMK 2arhA 171 :EFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30066 # 1uddA.177.115 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 177 :YVRDLLMKF 1uddA 116 :FMLATAYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30067 # 1uteA.177.167 read from T0287.t06.many.frag # found chain 1uteA in training set T0287 177 :YVRDLLMKF 1uteA 168 :WIKKQLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30068 # 2d0tA.177.308 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)K184 (2d0tA)N313 because P (beta_P) conformation "forbidden" or filtered. T0287 177 :Y 2d0tA 306 :F T0287 180 :DLLM 2d0tA 309 :SLES T0287 185 :F 2d0tA 314 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=30071 # 1i60A.177.266 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 177 :YVRDLLMKF 1i60A 267 :TTVDVVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30072 # 1ursA.177.217 read from T0287.t06.many.frag # found chain 1ursA in training set T0287 177 :YVRDLLMKF 1ursA 218 :LMRDMVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30073 # 1colA.177.80 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 T0287 177 :YV 1colA 81 :AL T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=30075 # 2f1rA.177.154 read from T0287.t06.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 177 :YVRDLLM 2f1rA 155 :FILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30076 # 1f5qB.178.235 read from T0287.t06.many.frag # found chain 1f5qB in template set Warning: unaligning (T0287)K184 (1f5qB)S242 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLLM 1f5qB 236 :VDIAIV T0287 185 :FD 1f5qB 243 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30078 # 1ifqA.178.47 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 178 :VRDLLMKFD 1ifqA 37 :AKQLFRKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30079 # 1x38A.178.15 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 178 :VRDLLMKFD 1x38A 16 :VADLLGRMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30080 # 1wzdA.178.175 read from T0287.t06.many.frag # found chain 1wzdA in template set Warning: unaligning (T0287)D186 (1wzdA)E184 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1wzdA 176 :YREKLNNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30081 # 1n69A.178.59 read from T0287.t06.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1n69A 58 :AIQMMMHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30082 # 1b3tA.178.118 read from T0287.t06.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)K184 (1b3tA)T585 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1b3tA)P587 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLM 1b3tA 579 :IKDLVM T0287 185 :F 1b3tA 586 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=30084 # 2gmfA.178.109 read from T0287.t06.many.frag # found chain 2gmfA in template set Warning: unaligning (T0287)D186 (2gmfA)P118 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 2gmfA 110 :LKDFLLVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30085 # 1nznA.178.96 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 178 :VRDLLMKFD 1nznA 97 :VRGLLQTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30086 # 2b6cA.178.193 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 178 :VRDLLMKFD 2b6cA 191 :VEELMKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30087 # 1qwtA.178.239 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 178 :VRDLLMKFD 1qwtA 412 :LQDLVEGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30088 # 1z77A.178.131 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 178 :VRDLLMKFD 1z77A 132 :VREKLKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30089 # 1jl1A.178.136 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 178 :VRDLLMKFD 1jl1A 137 :ARAAAMNPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30090 # 2d0tA.178.309 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 2d0tA 309 :SLESNP Number of specific fragments extracted= 1 number of extra gaps= 2 total=30091 # 1orc.178.6 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1orc 7 :LKDYAMRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30092 # 1vjuA.178.156 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 178 :VRDLLMKFD 1vjuA 157 :AQDLCKPFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30093 # 1tr9A.178.321 read from T0287.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 178 :VRDLLMKF 1tr9A 321 :MQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30094 # 1tqhA.178.237 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 178 :VRDLLMKFD 1tqhA 238 :IYAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30095 # 1yjsA.178.379 read from T0287.t06.many.frag # found chain 1yjsA in template set T0287 178 :VRDLLMKFD 1yjsA 380 :IGLVLKNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30096 # 1colA.178.81 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 178 :V 1colA 82 :L T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=30098 # 1xqwA.178.284 read from T0287.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)D186 because last residue in template chain is (1xqwA)L293 T0287 178 :VRDLLMKF 1xqwA 285 :LSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30099 # 1uddA.178.116 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 178 :VRDLLMKFD 1uddA 117 :MLATAYKGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30100 # 2arhA.178.173 read from T0287.t06.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 Warning: unaligning (T0287)D186 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arhA)E180 T0287 178 :VRDLLMK 2arhA 172 :FEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30101 # 1yvrA.178.268 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 178 :VRDLLMKFD 1yvrA 269 :WKSLLQDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30102 # 1q7eA.178.313 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 178 :VRDLLMKFD 1q7eA 314 :IEKYTVTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=30103 # 1vpjA.178.102 read from T0287.t06.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1vpjA)T91 T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30104 # 1j9lA.178.142 read from T0287.t06.many.frag # found chain 1j9lA in template set T0287 178 :VRDLLMKFD 1j9lA 143 :LIDFLKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30105 # 1bm8.178.79 read from T0287.t06.many.frag # found chain 1bm8 in training set T0287 178 :VRDLLMKFD 1bm8 83 :AKQLAEKFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30106 # 1fo8A.178.90 read from T0287.t06.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)D186 (1fo8A)N203 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1fo8A 195 :LGQIFHNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30107 # 1wouA.178.52 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 178 :VRDLLMKFD 1wouA 53 :VREGLKHIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30108 # 1ursA.178.218 read from T0287.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1ursA 219 :MRDMVSKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30109 # 1n69A.179.60 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 179 :RDLLMKFDL 1n69A 59 :IQMMMHMQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30110 # 1f5qB.179.236 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 179 :RDLLMKFDL 1f5qB 237 :DIAIVSFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30111 # 2b6cA.179.194 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 179 :RDLLMKFDL 2b6cA 192 :EELMKELVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30112 # 1x38A.179.16 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 179 :RDLLMKFDL 1x38A 17 :ADLLGRMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30113 # 1orc.179.7 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)F185 (1orc)F14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1orc 8 :KDYAMR T0287 187 :L 1orc 16 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=30115 # 1wzdA.179.176 read from T0287.t06.many.frag # found chain 1wzdA in template set Warning: unaligning (T0287)K184 (1wzdA)N182 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLLM 1wzdA 177 :REKLN T0287 185 :FDL 1wzdA 183 :LEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30117 # 1uddA.179.117 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 179 :RDLLMKFDL 1uddA 118 :LATAYKGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30118 # 1ifqA.179.48 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 179 :RDLLMKFDL 1ifqA 38 :KQLFRKLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30119 # 1b3tA.179.119 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 179 :RDLLMKFDL 1b3tA 580 :KDLVMTKPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30120 # 1ucdA.179.105 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 179 :RDLLMKFDL 1ucdA 106 :VDMRNNYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30121 # 1colA.179.82 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)K184 (1colA)H88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLM 1colA 85 :AWK T0287 187 :L 1colA 91 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=30123 # 1yvrA.179.269 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 179 :RDLLMKFDL 1yvrA 270 :KSLLQDMPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30124 # 1j9lA.179.143 read from T0287.t06.many.frag # found chain 1j9lA in template set T0287 179 :RDLLMKFDL 1j9lA 144 :IDFLKEFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30125 # 1bm8.179.80 read from T0287.t06.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)F185 (1bm8)F90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1bm8 84 :KQLAEK T0287 187 :L 1bm8 92 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30127 # 2gmfA.179.110 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 179 :RDLLMKFDL 2gmfA 111 :KDFLLVIPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30128 # 1zbxB.179.46 read from T0287.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0287)D186 (1zbxB)N533 because P (beta_P) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1zbxB 526 :RAMIDQM T0287 187 :L 1zbxB 534 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30130 # 1wkcA.179.10 read from T0287.t06.many.frag # found chain 1wkcA in training set T0287 179 :RDLLMKFDL 1wkcA 11 :RAAWRRLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30131 # 1ursA.179.219 read from T0287.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ursA 220 :RDMVSKY T0287 187 :L 1ursA 228 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=30133 # 1ty9A.179.132 read from T0287.t06.many.frag # found chain 1ty9A in training set T0287 179 :RDLLMKFDL 1ty9A 133 :DDAWLKRPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30134 # 1z77A.179.132 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 179 :RDLLMKFDL 1z77A 133 :REKLKDLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30135 # 1q7eA.179.314 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 179 :RDLLMKFDL 1q7eA 315 :EKYTVTIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30136 # 1jl1A.179.137 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 179 :RDLLMKFDL 1jl1A 138 :RAAAMNPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30137 # 1tqhA.179.238 read from T0287.t06.many.frag # found chain 1tqhA in training set Warning: unaligning (T0287)L187 because last residue in template chain is (1tqhA)W247 T0287 179 :RDLLMKFD 1tqhA 239 :YAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30138 # 1wusA.179.110 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1wusA 186 :RLALMQ T0287 186 :DL 1wusA 193 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30140 # 1vpjA.179.103 read from T0287.t06.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30141 # 1tr9A.179.322 read from T0287.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 179 :RDLLMKF 1tr9A 322 :QRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30142 # 2d0tA.179.310 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 2d0tA 309 :SLESNP T0287 187 :L 2d0tA 316 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=30144 # 2lisA.179.89 read from T0287.t06.many.frag # found chain 2lisA in training set T0287 179 :RDLLMKFDL 2lisA 90 :AEIGRRIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30145 # 1t71A.179.141 read from T0287.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0287)F185 (1t71A)R148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L187 (1t71A)C150 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMK 1t71A 142 :KELILK T0287 186 :D 1t71A 149 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=30147 # 1yjsA.179.380 read from T0287.t06.many.frag # found chain 1yjsA in template set T0287 179 :RDLLMKFDL 1yjsA 381 :GLVLKNVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30148 # 1n69A.180.61 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 180 :DLLMKFDLE 1n69A 60 :QMMMHMQPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30149 # 1orc.180.8 read from T0287.t06.many.frag # found chain 1orc in training set T0287 180 :DLLMKFDLE 1orc 9 :DYAMRFGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30150 # 1ucdA.180.106 read from T0287.t06.many.frag # found chain 1ucdA in training set Warning: unaligning (T0287)K184 (1ucdA)N111 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLM 1ucdA 107 :DMRN T0287 185 :FDLE 1ucdA 112 :YDII Number of specific fragments extracted= 2 number of extra gaps= 1 total=30152 # 1colA.180.83 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LE 1colA 91 :AQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=30154 # 2b6cA.180.195 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)D186 (2b6cA)V199 because N (gamma') conformation "forbidden" or filtered. T0287 180 :DLLMKF 2b6cA 193 :ELMKEL T0287 187 :LE 2b6cA 200 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30156 # 1x38A.180.17 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 180 :DLLMKFDLE 1x38A 18 :DLLGRMTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30157 # 1uddA.180.118 read from T0287.t06.many.frag # found chain 1uddA in template set Warning: unaligning (T0287)D186 (1uddA)N125 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1uddA 119 :ATAYKG T0287 187 :LE 1uddA 126 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=30159 # 1f5qB.180.237 read from T0287.t06.many.frag # found chain 1f5qB in template set Warning: unaligning (T0287)D186 (1f5qB)D244 because E (beta_S) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1f5qB 238 :IAIVSF T0287 187 :LE 1f5qB 245 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30161 # 1q7eA.180.315 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 180 :DLLMKFDLE 1q7eA 316 :KYTVTIDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30162 # 1j9lA.180.144 read from T0287.t06.many.frag # found chain 1j9lA in template set T0287 180 :DLLMKFDLE 1j9lA 145 :DFLKEFDFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30163 # 1zbxB.180.47 read from T0287.t06.many.frag # found chain 1zbxB in template set T0287 180 :DLLMKFDLE 1zbxB 527 :AMIDQMNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30164 # 1wzdA.180.177 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 180 :DLLMKFDLE 1wzdA 178 :EKLNNLELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30165 # 1wusA.180.111 read from T0287.t06.many.frag # found chain 1wusA in template set T0287 180 :DLLMKFDLE 1wusA 187 :LALMQKKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30166 # 1yvrA.180.270 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 180 :DLLMKFDLE 1yvrA 271 :SLLQDMPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30167 # 1zi8A.180.85 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 180 :DLLMKFDLE 1zi8A 86 :KLWQAFDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=30168 # 1wkcA.180.11 read from T0287.t06.many.frag # found chain 1wkcA in training set T0287 180 :DLLMKFDLE 1wkcA 12 :AAWRRLDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30169 # 1ty9A.180.133 read from T0287.t06.many.frag # found chain 1ty9A in training set T0287 180 :DLLMKFDLE 1ty9A 134 :DAWLKRPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30170 # 1bm8.180.81 read from T0287.t06.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)F185 (1bm8)F90 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLMK 1bm8 85 :QLAEK T0287 186 :DLE 1bm8 91 :SVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30172 # 1ifqA.180.49 read from T0287.t06.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKF 1ifqA 39 :QLFRKL T0287 187 :LE 1ifqA 46 :EQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30174 # 1mzgA.180.94 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 180 :DLLMKFDLE 1mzgA 95 :QDIVNFDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30175 # 1b3tA.180.120 read from T0287.t06.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)E188 (1b3tA)P589 because C (cis) conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 1b3tA 581 :DLVMTKPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30176 # 1ursA.180.220 read from T0287.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E188 (1ursA)M229 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKF 1ursA 221 :DMVSKY T0287 187 :L 1ursA 228 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=30178 # 1j5sA.180.140 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 180 :DL 1j5sA 129 :KK T0287 184 :KFDLE 1j5sA 133 :EMTPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30180 # 2lisA.180.90 read from T0287.t06.many.frag # found chain 2lisA in training set T0287 180 :DLLMKFDLE 2lisA 91 :EIGRRIDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30181 # 1t77A.180.128 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 180 :DLLMKFDLE 1t77A 2204 :QLFKASNMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30182 # 1vpjA.180.104 read from T0287.t06.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)E188 (1vpjA)M101 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 1vpjA 93 :KILEKVEC Number of specific fragments extracted= 1 number of extra gaps= 1 total=30183 # 1rkxA.180.334 read from T0287.t06.many.frag # found chain 1rkxA in template set T0287 180 :DLLMKFDLE 1rkxA 335 :NWLSGTDMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30184 # 1pyaB.180.200 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 180 :DLLMKFDLE 1pyaB 283 :EIMENLTMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30185 # 1yo3A.180.39 read from T0287.t06.many.frag # found chain 1yo3A in training set T0287 180 :DLLMKFDLE 1yo3A 21 :QALQKYNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30186 # 2gmfA.180.111 read from T0287.t06.many.frag # found chain 2gmfA in template set Warning: unaligning (T0287)D186 (2gmfA)P118 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 2gmfA 112 :DFLLVI T0287 187 :LE 2gmfA 119 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30188 # 1n69A.181.62 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 181 :LLMKFDLEK 1n69A 61 :MMMHMQPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30189 # 1ucdA.181.107 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 181 :LLMKFDLEK 1ucdA 108 :MRNNYDIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30190 # 1orc.181.9 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 181 :LLMKF 1orc 10 :YAMRF T0287 187 :LEK 1orc 16 :QTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30192 # 1colA.181.84 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LEK 1colA 91 :AQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30194 # 1q7eA.181.316 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 181 :LLMKFDLEK 1q7eA 317 :YTVTIDKHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30195 # 1x38A.181.18 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 181 :LLMKFDLEK 1x38A 19 :LLGRMTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30196 # 2b6cA.181.196 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 181 :LLMKFDLEK 2b6cA 194 :LMKELVLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30197 # 1wusA.181.112 read from T0287.t06.many.frag # found chain 1wusA in template set T0287 181 :LLMKFDLEK 1wusA 188 :ALMQKKLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30198 # 1zi8A.181.86 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 181 :LLMKFDLEK 1zi8A 87 :LWQAFDMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30199 # 1uddA.181.119 read from T0287.t06.many.frag # found chain 1uddA in template set Warning: unaligning (T0287)D186 (1uddA)N125 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1uddA 120 :TAYKG T0287 187 :LEK 1uddA 126 :IIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30201 # 1mzgA.181.95 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 181 :LLMKFDLEK 1mzgA 96 :DIVNFDVRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30202 # 1j9lA.181.145 read from T0287.t06.many.frag # found chain 1j9lA in template set T0287 181 :LLMKFDLEK 1j9lA 146 :FLKEFDFSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30203 # 1yvrA.181.271 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 181 :LLMKFDLEK 1yvrA 272 :LLQDMPLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30204 # 1wkcA.181.12 read from T0287.t06.many.frag # found chain 1wkcA in training set T0287 181 :LLMKFDLEK 1wkcA 13 :AWRRLDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30205 # 1pyaB.181.201 read from T0287.t06.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1pyaB 284 :IMENL T0287 187 :LEK 1pyaB 290 :MPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30207 # 2b8nA.181.393 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 2b8nA 382 :YLKN T0287 186 :DLEK 2b8nA 387 :DSYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30209 # 1zbxB.181.48 read from T0287.t06.many.frag # found chain 1zbxB in template set Warning: unaligning (T0287)D186 (1zbxB)N533 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1zbxB 528 :MIDQM T0287 187 :LEK 1zbxB 534 :LVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30211 # 1bm8.181.82 read from T0287.t06.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMKF 1bm8 86 :LAEKF T0287 187 :LEK 1bm8 92 :VYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30213 # 1fs1A.181.19 read from T0287.t06.many.frag # found chain 1fs1A in training set Warning: unaligning (T0287)D186 (1fs1A)C125 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1fs1A 120 :IFSCL T0287 187 :LEK 1fs1A 126 :LPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30215 # 1rz4A.181.107 read from T0287.t06.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1rz4A 108 :LLET T0287 186 :DLEK 1rz4A 113 :HFQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30217 # 2d0tA.181.312 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 181 :LLMKFDLEK 2d0tA 310 :LESNPSVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30218 # 1rkxA.181.335 read from T0287.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 181 :LLM 1rkxA 336 :WLS T0287 185 :FDLEK 1rkxA 340 :TDMHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30220 # 2c1lA.181.146 read from T0287.t06.many.frag # found chain 2c1lA in template set T0287 181 :LLMKFDLEK 2c1lA 147 :QSMGFSWND Number of specific fragments extracted= 1 number of extra gaps= 0 total=30221 # 1t77A.181.129 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 181 :LLMKFDLEK 1t77A 2205 :LFKASNMTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30222 # 1r5yA.181.363 read from T0287.t06.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1r5yA 364 :SISE T0287 186 :DLEK 1r5yA 369 :RFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30224 # 1j5sA.181.141 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 181 :L 1j5sA 130 :K T0287 184 :KFDLEK 1j5sA 133 :EMTPQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30226 # 1ty9A.181.134 read from T0287.t06.many.frag # found chain 1ty9A in training set T0287 181 :LLMKFDLEK 1ty9A 135 :AWLKRPYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30227 # 1wzdA.181.178 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 181 :LLMKFDLEK 1wzdA 179 :KLNNLELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30228 # 1vk9A.181.130 read from T0287.t06.many.frag # found chain 1vk9A in template set Warning: unaligning (T0287)K184 (1vk9A)M122 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLM 1vk9A 119 :VLE T0287 185 :FDLEK 1vk9A 123 :DDPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30230 # 1yo3A.181.40 read from T0287.t06.many.frag # found chain 1yo3A in training set T0287 181 :LLMKFDLEK 1yo3A 22 :ALQKYNVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30231 # 1n69A.182.63 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 182 :LMKFDLEKY 1n69A 62 :MMHMQPKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30232 # 1ucdA.182.108 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 182 :LMKFDLEKY 1ucdA 109 :RNNYDIIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30233 # 1orc.182.10 read from T0287.t06.many.frag # found chain 1orc in training set T0287 182 :LMKFDLEKY 1orc 11 :AMRFGQTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30234 # 1colA.182.85 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 182 :LMK 1colA 86 :WKH T0287 187 :LEKY 1colA 91 :AQDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30236 # 1q7eA.182.317 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 182 :LMKFDLEKY 1q7eA 318 :TVTIDKHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30237 # 1wusA.182.113 read from T0287.t06.many.frag # found chain 1wusA in template set T0287 182 :LMKFDLEKY 1wusA 189 :LMQKKLSEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30238 # 1j2rA.182.117 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 182 :LMKFDLEKY 1j2rA 118 :FYGTDLELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30239 # 2c1lA.182.147 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 2c1lA 148 :SM T0287 185 :FDLEKY 2c1lA 151 :FSWNDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30241 # 1zi8A.182.87 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 182 :LMKFDLEKY 1zi8A 88 :WQAFDMEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30242 # 1mzgA.182.96 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 182 :LMKFDLEKY 1mzgA 97 :IVNFDVRPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30243 # 1pyaB.182.202 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 182 :LMKFDLEKY 1pyaB 285 :MENLTMPEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30244 # 1x38A.182.19 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 182 :LMKFDLEKY 1x38A 20 :LGRMTLAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30245 # 2b8nA.182.394 read from T0287.t06.many.frag # found chain 2b8nA in template set T0287 182 :LMKFDLEKY 2b8nA 383 :LKNNDSYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30246 # 1rz4A.182.108 read from T0287.t06.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1rz4A 109 :LET T0287 186 :DLEKY 1rz4A 113 :HFQAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30248 # 2d0tA.182.313 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 182 :LMKFDLEKY 2d0tA 311 :ESNPSVREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30249 # 1yvrA.182.272 read from T0287.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1yvrA 273 :LQDM T0287 187 :LEKY 1yvrA 278 :LTAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30251 # 1xcrA.182.75 read from T0287.t06.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 182 :LMKF 1xcrA 75 :KKVY T0287 187 :LEKY 1xcrA 80 :LNKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30253 # 1rkxA.182.336 read from T0287.t06.many.frag # found chain 1rkxA in template set T0287 182 :LMKFDLEKY 1rkxA 337 :LSGTDMHEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30254 # 1qouA.182.146 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)M183 (1qouA)D147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 182 :L 1qouA 146 :R T0287 185 :FDLEKY 1qouA 149 :FNTRKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30256 # 1uddA.182.120 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 182 :LMKFDLEKY 1uddA 121 :AYKGNIIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30257 # 1wkcA.182.13 read from T0287.t06.many.frag # found chain 1wkcA in training set T0287 182 :LMKFDLEKY 1wkcA 14 :WRRLDLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30258 # 1ujpA.182.236 read from T0287.t06.many.frag # found chain 1ujpA in training set T0287 182 :LMKFDLEKY 1ujpA 237 :EEGRSLAPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30259 # 1j5sA.182.142 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1j5sA 133 :EM T0287 187 :LEKY 1j5sA 136 :PQKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30261 # 1sa3A.182.127 read from T0287.t06.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)M183 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K184 (1sa3A)E130 because E (beta_S) conformation "forbidden" or filtered. T0287 182 :L 1sa3A 128 :I T0287 185 :FDLEKY 1sa3A 131 :YDVETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30263 # 1r5yA.182.364 read from T0287.t06.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1r5yA 365 :ISE T0287 186 :DLEKY 1r5yA 369 :RFSQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30265 # 1vk9A.182.131 read from T0287.t06.many.frag # found chain 1vk9A in template set T0287 182 :LMKFDLEKY 1vk9A 120 :LEMDDPEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30266 # 1fs1A.182.20 read from T0287.t06.many.frag # found chain 1fs1A in training set T0287 182 :LMKFDLEKY 1fs1A 121 :FSCLCLPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30267 # 1fs7A.182.431 read from T0287.t06.many.frag # found chain 1fs7A in training set Warning: unaligning (T0287)K184 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0287 182 :LM 1fs7A 454 :LA T0287 185 :FDLEKY 1fs7A 457 :VDMEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30269 # 2cwcA.182.178 read from T0287.t06.many.frag # found chain 2cwcA in template set Warning: unaligning (T0287)K184 (2cwcA)G181 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 2cwcA 179 :LR T0287 185 :FDLEKY 2cwcA 182 :APKEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30271 # 1j1jA.182.87 read from T0287.t06.many.frag # found chain 1j1jA in template set T0287 182 :LMKFDLEKY 1j1jA 76 :KTKFPAEQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30272 # 1n69A.183.64 read from T0287.t06.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :MKF 1n69A 63 :MHM T0287 187 :LEKYM 1n69A 67 :PKEIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=30274 # 1orc.183.11 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 183 :MKF 1orc 12 :MRF T0287 187 :LEKYM 1orc 16 :QTKTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30276 # 1ucdA.183.109 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 183 :MKFDLEKYM 1ucdA 110 :NNYDIIGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30277 # 1qouA.183.147 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1qouA 147 :D T0287 185 :FDLEKYM 1qouA 149 :FNTRKFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30279 # 1colA.183.86 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)K184 (1colA)H88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 183 :M 1colA 87 :K T0287 187 :LEKYM 1colA 91 :AQDMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30281 # 1oz2A.183.223 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)C423 because E (beta_S) conformation "forbidden" or filtered. T0287 183 :MKF 1oz2A 420 :DNF T0287 187 :LEKYM 1oz2A 424 :WEKYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30283 # 1j2rA.183.118 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 183 :MKFDLEKYM 1j2rA 119 :YGTDLELQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30284 # 1pyaB.183.203 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 183 :MKFDLEKYM 1pyaB 286 :ENLTMPEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30285 # 2c1lA.183.148 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 2c1lA 149 :M T0287 185 :FDLEKYM 2c1lA 151 :FSWNDMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30287 # 1xcrA.183.76 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 183 :MKFDLEKYM 1xcrA 76 :KVYDLNKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30288 # 1q7eA.183.318 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 183 :MKFDLEKYM 1q7eA 319 :VTIDKHEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30289 # 1wusA.183.114 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1wusA 190 :MQ T0287 186 :DLEKYM 1wusA 193 :KLSEYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30291 # 2b8nA.183.395 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 2b8nA 384 :KN T0287 186 :DLEKYM 2b8nA 387 :DSYNAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30293 # 2d0tA.183.314 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)K184 (2d0tA)N313 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :M 2d0tA 312 :S T0287 185 :FDLEKYM 2d0tA 314 :PSVREFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30295 # 1mzgA.183.97 read from T0287.t06.many.frag # found chain 1mzgA in template set Warning: unaligning (T0287)K184 (1mzgA)N99 because G (3-10) conformation "forbidden" or filtered. T0287 183 :M 1mzgA 98 :V T0287 185 :FDLEKYM 1mzgA 100 :FDVRPWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30297 # 1sa3A.183.128 read from T0287.t06.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)M183 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K184 (1sa3A)E130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (1sa3A)Y131 because Y (epsilon') conformation "forbidden" or filtered. T0287 186 :DLEKYM 1sa3A 132 :DVETIC Number of specific fragments extracted= 1 number of extra gaps= 1 total=30298 # 1l3lA.183.186 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 183 :MKFDLEKYM 1l3lA 187 :VGKTMEEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30299 # 1rz4A.183.109 read from T0287.t06.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1rz4A 110 :ET T0287 186 :DLEKYM 1rz4A 113 :HFQAFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=30301 # 1zi8A.183.88 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 183 :MKFDLEKYM 1zi8A 89 :QAFDMEAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30302 # 1l5aA.183.308 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 183 :MKFDLEKYM 1l5aA 309 :GRYRIEQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30303 # 1x38A.183.20 read from T0287.t06.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)D186 (1x38A)T24 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :MKF 1x38A 21 :GRM T0287 187 :LEKYM 1x38A 25 :LAEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30305 # 1ujpA.183.237 read from T0287.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1ujpA 238 :E T0287 185 :FDLEKYM 1ujpA 240 :RSLAPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30307 # 1uocA.183.224 read from T0287.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 Warning: unaligning (T0287)F185 (1uocA)Y227 because G (3-10) conformation "forbidden" or filtered. T0287 186 :DLEKYM 1uocA 228 :SLTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30308 # 1rkxA.183.337 read from T0287.t06.many.frag # found chain 1rkxA in template set T0287 183 :MKFDLEKYM 1rkxA 338 :SGTDMHEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30309 # 1r5yA.183.365 read from T0287.t06.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1r5yA 366 :SE T0287 186 :DLEKYM 1r5yA 369 :RFSQFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30311 # 1yvrA.183.273 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 183 :MKFDLEKYM 1yvrA 274 :QDMPLTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30312 # 1o2dA.183.311 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :MK 1o2dA 300 :FG T0287 186 :DLEKYM 1o2dA 303 :SLLKFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30314 # 1oz2A.183.115 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 183 :MKFDLEKYM 1oz2A 312 :EEFSWSQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30315 # 1j5sA.183.143 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 184 :KFDLEKYM 1j5sA 133 :EMTPQKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30316 # 1vk4A.183.258 read from T0287.t06.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)K184 (1vk4A)K248 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1vk4A 247 :K T0287 185 :FDLEKYM 1vk4A 249 :MSIEKAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30318 # 1n69A.184.65 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 184 :KFDLEKYMK 1n69A 64 :HMQPKEICA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30319 # 1qouA.184.148 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 184 :KFDLEKYMK 1qouA 148 :GFNTRKFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30320 # 1oz2A.184.224 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)K184 (1oz2A)N421 because G (3-10) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1oz2A 422 :FCWEKYLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30321 # 1orc.184.12 read from T0287.t06.many.frag # found chain 1orc in training set T0287 184 :KFDLEKYMK 1orc 13 :RFGQTKTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30322 # 1j2rA.184.119 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 184 :KFDLEKYMK 1j2rA 120 :GTDLELQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30323 # 2c1lA.184.149 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 2c1lA 151 :FSWNDMIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30324 # 1pyaB.184.204 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 184 :KFDLEKYMK 1pyaB 287 :NLTMPEWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30325 # 1xcrA.184.77 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 184 :KFDLEKYMK 1xcrA 77 :VYDLNKIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30326 # 1ucdA.184.110 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 184 :KFDLEKYMK 1ucdA 111 :NYDIIGALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30327 # 1o2dA.184.312 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K184 (1o2dA)G301 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. T0287 186 :DLEKYMK 1o2dA 303 :SLLKFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30328 # 1wusA.184.115 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1wusA 191 :Q T0287 186 :DLEKYMK 1wusA 193 :KLSEYMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30330 # 2d0tA.184.315 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)K184 (2d0tA)N313 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 2d0tA 314 :P T0287 187 :LEKYMK 2d0tA 316 :VREFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30332 # 1colA.184.87 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 184 :K 1colA 88 :H T0287 187 :LEKYMK 1colA 91 :AQDMAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30334 # 1l5aA.184.309 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 184 :KFDLEKYMK 1l5aA 310 :RYRIEQIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30335 # 1l3lA.184.187 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 184 :KFDLEKYMK 1l3lA 188 :GKTMEEIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30336 # 1oz2A.184.116 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)S315 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1oz2A 313 :EF T0287 187 :LEKYMK 1oz2A 316 :WSQYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=30338 # 2b8nA.184.396 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 184 :K 2b8nA 385 :N T0287 186 :DLEKYMK 2b8nA 387 :DSYNALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30340 # 1mzgA.184.98 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 184 :KFDLEKYMK 1mzgA 99 :NFDVRPWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30341 # 1f86A.184.62 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 184 :KFDLEKYMK 1f86A 72 :EIDTKSYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30342 # 1ywfA.184.269 read from T0287.t06.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)K184 (1ywfA)Y250 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (1ywfA)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMK 1ywfA 253 :LGGYLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30343 # 1j54A.184.141 read from T0287.t06.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)F185 (1j54A)N143 because G (3-10) conformation "forbidden" or filtered. T0287 184 :K 1j54A 142 :R T0287 186 :DLEKYMK 1j54A 144 :SLDALCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30345 # 1ujpA.184.238 read from T0287.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1ujpA 240 :RSLAPLLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30346 # 1sa3A.184.129 read from T0287.t06.many.frag # found chain 1sa3A in template set T0287 184 :KFDLEKYMK 1sa3A 130 :EYDVETICT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30347 # 1uocA.184.225 read from T0287.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 Warning: unaligning (T0287)D186 (1uocA)S228 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1uocA 227 :Y T0287 187 :LEKYMK 1uocA 229 :LTTLAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30349 # 1r5yA.184.366 read from T0287.t06.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1r5yA 367 :E T0287 186 :DLEKYMK 1r5yA 369 :RFSQFAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30351 # 1rz4A.184.110 read from T0287.t06.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1rz4A 111 :T T0287 186 :DLEKYMK 1rz4A 113 :HFQAFWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30353 # 1mtyG.184.145 read from T0287.t06.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)D186 (1mtyG)P151 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1mtyG 149 :DT T0287 187 :LEKYMK 1mtyG 152 :LEELRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30355 # 1zi8A.184.89 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 184 :KFDLEKYMK 1zi8A 90 :AFDMEAGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30356 # 1j5sA.184.144 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 184 :KFDLEKYMK 1j5sA 133 :EMTPQKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30357 # 1q7eA.184.319 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 184 :KFDLEKYMK 1q7eA 320 :TIDKHEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30358 # 1oz2A.185.225 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 422 :FCWEKYLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30359 # 1qouA.185.149 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 185 :FDLEKYMKE 1qouA 149 :FNTRKFTQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30360 # 1pyaB.185.205 read from T0287.t06.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1pyaB 288 :L T0287 187 :LEKYMKE 1pyaB 290 :MPEWLEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30362 # 1n69A.185.66 read from T0287.t06.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1n69A 65 :M T0287 187 :LEKYMKE 1n69A 67 :PKEICAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30364 # 1j2rA.185.120 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 185 :FDLEKYMKE 1j2rA 121 :TDLELQLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30365 # 1orc.185.13 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 185 :F 1orc 14 :F T0287 187 :LEKYMKE 1orc 16 :QTKTAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30367 # 2c1lA.185.150 read from T0287.t06.many.frag # found chain 2c1lA in template set T0287 185 :FDLEKYMKE 2c1lA 151 :FSWNDMISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30368 # 1ywfA.185.270 read from T0287.t06.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)F185 (1ywfA)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1ywfA 253 :LGGYLRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30369 # 1o2dA.185.313 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 185 :FDLEKYMKE 1o2dA 302 :GSLLKFLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30370 # 1oz2A.185.117 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 314 :FSWSQYLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30371 # 1l5aA.185.310 read from T0287.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)D186 (1l5aA)R312 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1l5aA 311 :Y T0287 187 :LEKYMKE 1l5aA 313 :IEQIEQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30373 # 1xcrA.185.78 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 185 :FDLEKYMKE 1xcrA 78 :YDLNKIAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30374 # 1f86A.185.63 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 185 :FDLEKYMKE 1f86A 73 :IDTKSYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30375 # 1wusA.185.116 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1wusA 193 :KLSEYMKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30376 # 1j54A.185.142 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 185 :FDLEKYMKE 1j54A 143 :NSLDALCAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30377 # 1mtyG.185.146 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 185 :FDLEKYMKE 1mtyG 150 :TPLEELRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30378 # 1uocA.185.226 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 185 :FDLEKYMKE 1uocA 227 :YSLTTLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30379 # 2d0tA.185.316 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 185 :FDLEKYMKE 2d0tA 314 :PSVREFVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30380 # 1ucdA.185.111 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 185 :FDLEKYMKE 1ucdA 112 :YDIIGALRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30381 # 2c71A.185.182 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 185 :FDLEKYMKE 2c71A 658 :VTLTELFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30382 # 1l3lA.185.188 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 185 :FDLEKYMKE 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30383 # 1wkqA.185.119 read from T0287.t06.many.frag # found chain 1wkqA in training set T0287 185 :FDLEKYMKE 1wkqA 112 :FDDSFIYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30384 # 1sa3A.185.130 read from T0287.t06.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)F185 (1sa3A)Y131 because Y (epsilon') conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1sa3A 132 :DVETICTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30385 # 1ujpA.185.239 read from T0287.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)D186 (1ujpA)S241 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1ujpA 240 :R T0287 187 :LEKYMKE 1ujpA 242 :LAPLLQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30387 # 1um0A.185.103 read from T0287.t06.many.frag # found chain 1um0A in template set T0287 185 :FDLEKYMKE 1um0A 104 :HADFTYFHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30388 # 1w5rA.185.5 read from T0287.t06.many.frag # found chain 1w5rA in template set Warning: unaligning (T0287)F185 because first residue in template chain is (1w5rA)M3 T0287 186 :DLEKYMKE 1w5rA 4 :DLGGYLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30389 # 1rz4A.185.111 read from T0287.t06.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1rz4A 113 :HFQAFWQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30390 # 1colA.185.88 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 187 :LEKYMKE 1colA 91 :AQDMANK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30391 # 1mzgA.185.99 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 185 :FDLEKYMKE 1mzgA 100 :FDVRPWFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30392 # 1ifc.185.12 read from T0287.t06.many.frag # found chain 1ifc in training set Warning: unaligning (T0287)D186 (1ifc)N13 because L (left) conformation "forbidden" or filtered. T0287 185 :F 1ifc 12 :E T0287 187 :LEKYMKE 1ifc 14 :YEKFMEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30394 # 1oz2A.186.226 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)C423 because E (beta_S) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1oz2A 424 :WEKYLEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=30395 # 1qouA.186.150 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 186 :DLEKYMKEK 1qouA 150 :NTRKFTQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30396 # 1pyaB.186.206 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 186 :DLEKYMKEK 1pyaB 289 :TMPEWLEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30397 # 1o2dA.186.314 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 186 :DLEKYMKEK 1o2dA 303 :SLLKFLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30398 # 1j2rA.186.121 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 186 :DLEKYMKEK 1j2rA 122 :DLELQLRRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30399 # 1ywfA.186.271 read from T0287.t06.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ywfA 253 :LGGYLRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30400 # 1orc.186.14 read from T0287.t06.many.frag # found chain 1orc in training set T0287 186 :DLEKYMKEK 1orc 15 :GQTKTAKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30401 # 1n69A.186.67 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 186 :DLEKYMKEK 1n69A 66 :QPKEICALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30402 # 2c1lA.186.151 read from T0287.t06.many.frag # found chain 2c1lA in template set T0287 186 :DLEKYMKEK 2c1lA 152 :SWNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30403 # 1oz2A.186.118 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 315 :SWSQYLRST Number of specific fragments extracted= 1 number of extra gaps= 0 total=30404 # 1xcrA.186.79 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 186 :DLEKYMKEK 1xcrA 79 :DLNKIAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30405 # 1l5aA.186.311 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 186 :DLEKYMKEK 1l5aA 312 :RIEQIEQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30406 # 1f86A.186.64 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 186 :DLEKYMKEK 1f86A 74 :DTKSYWKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30407 # 1j54A.186.143 read from T0287.t06.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)D186 (1j54A)S144 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1j54A 145 :LDALCARY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30408 # 1mtyG.186.147 read from T0287.t06.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)D186 (1mtyG)P151 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1mtyG 152 :LEELRKQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30409 # 2d0tA.186.317 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 186 :DLEKYMKEK 2d0tA 315 :SVREFVLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30410 # 2c71A.186.183 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 186 :DLEKYMKEK 2c71A 659 :TLTELFTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30411 # 1jr2A.186.170 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 186 :DLEKYMKEK 1jr2A 150 :ILPKALKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30412 # 1wusA.186.117 read from T0287.t06.many.frag # found chain 1wusA in template set T0287 186 :DLEKYMKEK 1wusA 193 :KLSEYMKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30413 # 1uocA.186.227 read from T0287.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)D186 (1uocA)S228 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1uocA 229 :LTTLADEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30414 # 1jubA.186.287 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 186 :DLEKYMKEK 1jubA 288 :ELEEIMNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30415 # 1vbkA.186.245 read from T0287.t06.many.frag # found chain 1vbkA in template set T0287 186 :DLEKYMKEK 1vbkA 246 :RVLKLIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30416 # 1ucdA.186.112 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 186 :DLEKYMKEK 1ucdA 113 :DIIGALRPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30417 # 1ifc.186.13 read from T0287.t06.many.frag # found chain 1ifc in training set Warning: unaligning (T0287)D186 (1ifc)N13 because L (left) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ifc 14 :YEKFMEKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30418 # 1um0A.186.104 read from T0287.t06.many.frag # found chain 1um0A in template set T0287 186 :DLEKYMKEK 1um0A 105 :ADFTYFHKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30419 # 1mtpA.186.263 read from T0287.t06.many.frag # found chain 1mtpA in training set T0287 186 :DLEKYMKEK 1mtpA 266 :QLVEVLAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30420 # 1zsqA.186.140 read from T0287.t06.many.frag # found chain 1zsqA in template set T0287 186 :DLEKYMKEK 1zsqA 210 :DPLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30421 # 1od6A.186.72 read from T0287.t06.many.frag # found chain 1od6A in training set T0287 186 :DLEKYMKEK 1od6A 73 :LLVDFVRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30422 # 2b8nA.186.398 read from T0287.t06.many.frag # found chain 2b8nA in template set T0287 186 :DLEKYMKEK 2b8nA 387 :DSYNALKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30423 # 1ko6A.186.157 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 186 :DLEKYMKEK 1ko6A 834 :RLEAVSRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30424 # 1oz2A.187.227 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 424 :WEKYLEETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30425 # 1o2dA.187.315 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 187 :LEKYMKEKG 1o2dA 304 :LLKFLKELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30426 # 1ywfA.187.272 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 187 :LEKYMKEKG 1ywfA 253 :LGGYLRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30427 # 1qouA.187.151 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 187 :LEKYMKEKG 1qouA 151 :TRKFTQENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30428 # 1pyaB.187.207 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 187 :LEKYMKEKG 1pyaB 290 :MPEWLEKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30429 # 1j2rA.187.122 read from T0287.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)K194 (1j2rA)R130 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1j2rA 123 :LELQLRR T0287 195 :G 1j2rA 131 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=30431 # 1l5aA.187.312 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 187 :LEKYMKEKG 1l5aA 313 :IEQIEQDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30432 # 1f86A.187.65 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 187 :LEKYMKEKG 1f86A 75 :TKSYWKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30433 # 1n69A.187.68 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 187 :LEKYMKEKG 1n69A 67 :PKEICALVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30434 # 1orc.187.15 read from T0287.t06.many.frag # found chain 1orc in training set T0287 187 :LEKYMKEKG 1orc 16 :QTKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30435 # 1j54A.187.144 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 187 :LEKYMKEKG 1j54A 145 :LDALCARYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30436 # 1mtyG.187.148 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 187 :LEKYMKEKG 1mtyG 152 :LEELRKQRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30437 # 1oz2A.187.119 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 316 :WSQYLRSTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30438 # 2c71A.187.184 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 187 :LEKYMKEKG 2c71A 660 :LTELFTLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30439 # 1jr2A.187.171 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 187 :LEKYMKEKG 1jr2A 151 :LPKALKDKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30440 # 1vbkA.187.246 read from T0287.t06.many.frag # found chain 1vbkA in template set T0287 187 :LEKYMKEKG 1vbkA 247 :VLKLIRDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30441 # 1xcrA.187.80 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 187 :LEKYMKEKG 1xcrA 80 :LNKIAKEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30442 # 1jubA.187.288 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 187 :LEKYMKEKG 1jubA 289 :LEEIMNQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30443 # 2c1lA.187.152 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)G195 (2c1lA)L161 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 2c1lA 153 :WNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30444 # 1zsqA.187.141 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 T0287 187 :LEKYMKEK 1zsqA 211 :PLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30445 # 1e5kA.187.156 read from T0287.t06.many.frag # found chain 1e5kA in training set T0287 187 :LEKYMKEKG 1e5kA 157 :VMVFMRLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30446 # 1ux5A.187.359 read from T0287.t06.many.frag # found chain 1ux5A in template set T0287 187 :LEKYMKEKG 1ux5A 1709 :FESLMHTYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30447 # 1i0dA.187.298 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 187 :LEKYMKEKG 1i0dA 332 :VIPFLREKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30448 # 1u4bA.187.514 read from T0287.t06.many.frag # found chain 1u4bA in training set T0287 187 :LEKYMKEKG 1u4bA 811 :LNARLKEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=30449 # 1l3lA.187.190 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 187 :LEKYMKEKG 1l3lA 191 :MEEIADVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30450 # 1w6gA.187.115 read from T0287.t06.many.frag # found chain 1w6gA in template set T0287 187 :LEKYMKEKG 1w6gA 118 :WLKALAARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30451 # 1ko6A.187.158 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 187 :LEKYMKEKG 1ko6A 835 :LEAVSRKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30452 # 2bdeA.187.283 read from T0287.t06.many.frag # found chain 2bdeA in template set T0287 187 :LEKYMKEKG 2bdeA 284 :AKKFTEDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30453 # 1t0fC.187.32 read from T0287.t06.many.frag # found chain 1t0fC in template set T0287 187 :LEKYMKEKG 1t0fC 534 :MHERLKGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30454 # 1uocA.187.228 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 187 :LEKYMKEKG 1uocA 229 :LTTLADELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30455 # 1oz2A.188.228 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 425 :EKYLEETGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30456 # 1j2rA.188.123 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 188 :EKYMKEKGV 1j2rA 124 :ELQLRRRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30457 # 1o2dA.188.316 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 188 :EKYMKEKGV 1o2dA 305 :LKFLKELGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30458 # 1qouA.188.152 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 188 :EKYMKEKGV 1qouA 152 :RKFTQENEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30459 # 1ywfA.188.273 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 188 :EKYMKEKGV 1ywfA 254 :GGYLRDAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30460 # 1pyaB.188.208 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 188 :EKYMKEKGV 1pyaB 291 :PEWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30461 # 1l5aA.188.313 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 188 :EKYMKEKGV 1l5aA 314 :EQIEQDQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30462 # 1i0dA.188.299 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 188 :EKYMKEKGV 1i0dA 333 :IPFLREKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30463 # 1mtyG.188.149 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 188 :EKYMKEKGV 1mtyG 153 :EELRKQRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30464 # 1n69A.188.69 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 188 :EKYMKEKGV 1n69A 68 :KEICALVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30465 # 1jr2A.188.172 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 188 :EKYMKEKGV 1jr2A 152 :PKALKDKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30466 # 1jubA.188.289 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 188 :EKYMKEKGV 1jubA 290 :EEIMNQKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30467 # 1j54A.188.145 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 188 :EKYMKEKGV 1j54A 146 :DALCARYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30468 # 1f86A.188.66 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 188 :EKYMKEKGV 1f86A 76 :KSYWKALGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30469 # 2nacA.188.167 read from T0287.t06.many.frag # found chain 2nacA in training set T0287 188 :EKYMKEKGV 2nacA 168 :SHEWARKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30470 # 1ko6A.188.159 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 188 :EKYMKEKGV 1ko6A 836 :EAVSRKQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30471 # 1t0fC.188.33 read from T0287.t06.many.frag # found chain 1t0fC in template set T0287 188 :EKYMKEKGV 1t0fC 535 :HERLKGKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30472 # 2c71A.188.185 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 188 :EKYMKEKGV 2c71A 661 :TELFTLKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30473 # 1orc.188.16 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 T0287 188 :EKYMKEKG 1orc 17 :TKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30474 # 1u4bA.188.515 read from T0287.t06.many.frag # found chain 1u4bA in training set T0287 188 :EKYMKEKGV 1u4bA 812 :NARLKEERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30475 # 1vbkA.188.247 read from T0287.t06.many.frag # found chain 1vbkA in template set T0287 188 :EKYMKEKGV 1vbkA 248 :LKLIRDFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30476 # 1zsqA.188.142 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 T0287 188 :EKYMKEK 1zsqA 212 :LLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30477 # 1e5kA.188.157 read from T0287.t06.many.frag # found chain 1e5kA in training set T0287 188 :EKYMKEKGV 1e5kA 158 :MVFMRLAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30478 # 1lxjA.188.63 read from T0287.t06.many.frag # found chain 1lxjA in training set T0287 188 :EKYMKEKGV 1lxjA 64 :HEYGHEKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30479 # 1nuuA.188.223 read from T0287.t06.many.frag # found chain 1nuuA in template set T0287 188 :EKYMKEKGV 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30480 # 1oz2A.188.120 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 317 :SQYLRSTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30481 # 1l1sA.188.72 read from T0287.t06.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)K194 (1l1sA)S79 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1l1sA 73 :SNTLRA T0287 195 :GV 1l1sA 80 :GM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30483 # 1l3lA.188.191 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 188 :EKYMKEKGV 1l3lA 192 :EEIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30484 # 2d1pB.188.79 read from T0287.t06.many.frag # found chain 2d1pB in template set T0287 188 :EKYMKEKGV 2d1pB 80 :AASLRERGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30485 # 1ux5A.188.360 read from T0287.t06.many.frag # found chain 1ux5A in template set T0287 188 :EKYMKEKGV 1ux5A 1710 :ESLMHTYGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30486 # 1j2rA.189.124 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 189 :KYMKEKGVQ 1j2rA 125 :LQLRRRGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=30487 # 1oz2A.189.229 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 189 :KYMKEKGVQ 1oz2A 426 :KYLEETGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30488 # 1o2dA.189.317 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 189 :KYMKEKGVQ 1o2dA 306 :KFLKELGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30489 # 1ywfA.189.274 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 189 :KYMKEKGVQ 1ywfA 255 :GYLRDAGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30490 # 1pyaB.189.209 read from T0287.t06.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)Q197 (1pyaB)K300 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1pyaB 292 :EWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30491 # 1i0dA.189.300 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 189 :KYMKEKGVQ 1i0dA 334 :PFLREKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30492 # 1qouA.189.153 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)Q197 (1qouA)G161 because S (epsilon) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1qouA 153 :KFTQENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30493 # 1l5aA.189.314 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 189 :KYMKEKGVQ 1l5aA 315 :QIEQDQGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30494 # 1mtyG.189.150 read from T0287.t06.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)Q197 (1mtyG)R162 because E (beta_S) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1mtyG 154 :ELRKQRGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30495 # 1u4bA.189.516 read from T0287.t06.many.frag # found chain 1u4bA in training set T0287 189 :KYMKEKGVQ 1u4bA 813 :ARLKEERLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30496 # 1t0fC.189.34 read from T0287.t06.many.frag # found chain 1t0fC in template set T0287 189 :KYMKEKGVQ 1t0fC 536 :ERLKGKGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30497 # 2nacA.189.168 read from T0287.t06.many.frag # found chain 2nacA in training set T0287 189 :KYMKEKGVQ 2nacA 169 :HEWARKGGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30498 # 1f86A.189.67 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 189 :KYMKEKGVQ 1f86A 77 :SYWKALGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30499 # 1jubA.189.290 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 189 :KYMKEKGVQ 1jubA 291 :EIMNQKGYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30500 # 1zsqA.189.143 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 189 :KYMKEK 1zsqA 213 :LEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30501 # 1jr2A.189.173 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 189 :KYMKEKGVQ 1jr2A 153 :KALKDKGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30502 # 1j54A.189.146 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 189 :KYMKEKGVQ 1j54A 147 :ALCARYEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=30503 # 2c71A.189.186 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 189 :KYMKEKGVQ 2c71A 662 :ELFTLKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30504 # 1l1sA.189.73 read from T0287.t06.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l1sA 74 :NTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30505 # 1ko6A.189.160 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 189 :KYMKEKGVQ 1ko6A 837 :AVSRKQGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30506 # 1vbkA.189.248 read from T0287.t06.many.frag # found chain 1vbkA in template set T0287 189 :KYMKEKGVQ 1vbkA 249 :KLIRDFGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30507 # 1n69A.189.70 read from T0287.t06.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)K194 (1n69A)V74 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKE 1n69A 69 :EICAL T0287 195 :GVQ 1n69A 75 :GFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=30509 # 1orc.189.17 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1orc)Y26 T0287 189 :KYMKEKG 1orc 18 :KTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30510 # 1ux5A.189.361 read from T0287.t06.many.frag # found chain 1ux5A in template set T0287 189 :KYMKEKGVQ 1ux5A 1711 :SLMHTYGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=30511 # 1nuuA.189.224 read from T0287.t06.many.frag # found chain 1nuuA in template set T0287 189 :KYMKEKGVQ 1nuuA 225 :TYIKDHGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30512 # 2d1pB.189.80 read from T0287.t06.many.frag # found chain 2d1pB in template set T0287 189 :KYMKEKGVQ 2d1pB 81 :ASLRERGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30513 # 1e5kA.189.158 read from T0287.t06.many.frag # found chain 1e5kA in training set T0287 189 :KYMKEKGVQ 1e5kA 159 :VFMRLAGGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30514 # 1l3lA.189.192 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 189 :KYMKEKGVQ 1l3lA 193 :EIADVEGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30515 # 1c1yB.189.29 read from T0287.t06.many.frag # found chain 1c1yB in template set T0287 189 :KYMKEKGVQ 1c1yB 84 :KALKVRGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30516 # 2cvbA.189.88 read from T0287.t06.many.frag # found chain 2cvbA in template set T0287 189 :KYMKEKGVQ 2cvbA 89 :AFAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30517 # 1j2rA.190.125 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 190 :YMKEKGVQN 1j2rA 126 :QLRRRGIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30518 # 1oz2A.190.230 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 190 :YMKEKGVQN 1oz2A 427 :YLEETGASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30519 # 1jubA.190.291 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 190 :YMKEKGVQN 1jubA 292 :IMNQKGYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30520 # 1ywfA.190.275 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 190 :YMKEKGVQN 1ywfA 256 :YLRDAGISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30521 # 1i0dA.190.301 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 190 :YMKEKGVQN 1i0dA 335 :FLREKGVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30522 # 1mtyG.190.151 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 190 :YMKEKGVQN 1mtyG 155 :LRKQRGVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30523 # 1o2dA.190.318 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)N198 (1o2dA)E315 because E (beta_S) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1o2dA 307 :FLKELGLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30524 # 1pyaB.190.210 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 190 :YMKEKGVQN 1pyaB 293 :WLEKMGYKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30525 # 1vbkA.190.249 read from T0287.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)K194 (1vbkA)F254 because G (3-10) conformation "forbidden" or filtered. T0287 190 :YMKE 1vbkA 250 :LIRD T0287 195 :GVQN 1vbkA 255 :GVKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30527 # 1t0fC.190.35 read from T0287.t06.many.frag # found chain 1t0fC in template set T0287 190 :YMKEKGVQN 1t0fC 537 :RLKGKGVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30528 # 2nacA.190.169 read from T0287.t06.many.frag # found chain 2nacA in training set T0287 190 :YMKEKGVQN 2nacA 170 :EWARKGGWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30529 # 1onrA.190.116 read from T0287.t06.many.frag # found chain 1onrA in template set T0287 190 :YMKEKGVQN 1onrA 118 :LYNDAGISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30530 # 1l1sA.190.74 read from T0287.t06.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1l1sA 75 :TLRASGM T0287 198 :N 1l1sA 83 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=30532 # 1zsqA.190.144 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 190 :YMKEK 1zsqA 214 :EYRRQ T0287 198 :N 1zsqA 222 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=30534 # 1qouA.190.154 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)N198 (1qouA)L162 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1qouA 154 :FTQENELG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30535 # 1ko6A.190.161 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 190 :YMKEKGVQN 1ko6A 838 :VSRKQGAQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30536 # 1l5aA.190.315 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 190 :YMKEKGVQN 1l5aA 316 :IEQDQGLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30537 # 1u4bA.190.517 read from T0287.t06.many.frag # found chain 1u4bA in training set T0287 190 :YMKEKGVQN 1u4bA 814 :RLKEERLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30538 # 2c71A.190.187 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 190 :YMKEKGVQN 2c71A 663 :LFTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30539 # 1lxjA.190.65 read from T0287.t06.many.frag # found chain 1lxjA in training set T0287 190 :YMKEKGVQN 1lxjA 66 :YGHEKGYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30540 # 2cvbA.190.89 read from T0287.t06.many.frag # found chain 2cvbA in template set T0287 190 :YMKEKGVQN 2cvbA 90 :FAEEHGIFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30541 # 1i12A.190.142 read from T0287.t06.many.frag # found chain 1i12A in training set T0287 190 :YMKEKGVQN 1i12A 142 :FYEKCGFSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30542 # 1c1yB.190.30 read from T0287.t06.many.frag # found chain 1c1yB in template set T0287 190 :YMKEKGVQN 1c1yB 85 :ALKVRGLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30543 # 1j54A.190.147 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 190 :YMKEKGVQN 1j54A 148 :LCARYEIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30544 # 1n93X.190.364 read from T0287.t06.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1n93X 360 :IMKMIGVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30545 # 1ux5A.190.362 read from T0287.t06.many.frag # found chain 1ux5A in template set T0287 190 :YMKEKGVQN 1ux5A 1712 :LMHTYGEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30546 # 1nuuA.190.225 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N198 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1nuuA 226 :YIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30547 # 1y42X.190.148 read from T0287.t06.many.frag # found chain 1y42X in template set Warning: unaligning (T0287)Q197 (1y42X)E187 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1y42X 180 :QMRARGY T0287 198 :N 1y42X 188 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=30549 # 2d1pB.190.81 read from T0287.t06.many.frag # found chain 2d1pB in template set T0287 190 :YMKEKGVQN 2d1pB 82 :SLRERGLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30550 # 1f86A.190.68 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 190 :YMKEKGVQN 1f86A 78 :YWKALGISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30551 # 1mtyG.191.152 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 191 :MKEKGVQNA 1mtyG 156 :RKQRGVRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30552 # 1t0fC.191.36 read from T0287.t06.many.frag # found chain 1t0fC in template set Warning: unaligning (T0287)N198 (1t0fC)V545 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1t0fC 538 :LKGKGVI T0287 199 :A 1t0fC 546 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=30554 # 1jubA.191.292 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 191 :MKEKGVQNA 1jubA 293 :MNQKGYQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30555 # 1j2rA.191.126 read from T0287.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)N198 (1j2rA)T134 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1j2rA 127 :LRRRGID T0287 199 :A 1j2rA 135 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=30557 # 1vbkA.191.250 read from T0287.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1vbkA 251 :IRDFGVK T0287 199 :A 1vbkA 259 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30559 # 1onrA.191.117 read from T0287.t06.many.frag # found chain 1onrA in template set T0287 191 :MKEKGVQNA 1onrA 119 :YNDAGISND Number of specific fragments extracted= 1 number of extra gaps= 0 total=30560 # 1oz2A.191.231 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)Q197 (1oz2A)S434 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1oz2A 428 :LEETGA T0287 198 :NA 1oz2A 435 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30562 # 1i0dA.191.302 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 191 :MKEKGVQNA 1i0dA 336 :LREKGVPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30563 # 1ko6A.191.162 read from T0287.t06.many.frag # found chain 1ko6A in template set Warning: unaligning (T0287)N198 (1ko6A)F846 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1ko6A 839 :SRKQGAQ T0287 199 :A 1ko6A 847 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=30565 # 1sp3A.191.375 read from T0287.t06.many.frag # found chain 1sp3A in template set T0287 191 :MKEKGVQNA 1sp3A 376 :MLEKGIKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30566 # 1zsqA.191.145 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 191 :MKEK 1zsqA 215 :YRRQ T0287 198 :NA 1zsqA 222 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30568 # 1l1sA.191.75 read from T0287.t06.many.frag # found chain 1l1sA in template set T0287 191 :MKEKGVQNA 1l1sA 76 :LRASGMDGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30569 # 2cvbA.191.90 read from T0287.t06.many.frag # found chain 2cvbA in template set T0287 191 :MKEKGVQNA 2cvbA 91 :AEEHGIFFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30570 # 2nacA.191.170 read from T0287.t06.many.frag # found chain 2nacA in training set T0287 191 :MKEKGVQNA 2nacA 171 :WARKGGWNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30571 # 1n93X.191.365 read from T0287.t06.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1n93X 361 :MKMIGVT T0287 199 :A 1n93X 369 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30573 # 1c1yB.191.31 read from T0287.t06.many.frag # found chain 1c1yB in template set T0287 191 :MKEKGVQNA 1c1yB 86 :LKVRGLQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30574 # 1o2dA.191.319 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)A199 (1o2dA)K316 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 1o2dA 308 :LKELGLYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30575 # 1i12A.191.143 read from T0287.t06.many.frag # found chain 1i12A in training set T0287 191 :MKEKGVQNA 1i12A 143 :YEKCGFSNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30576 # 1ywfA.191.276 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 191 :MKEKGVQNA 1ywfA 257 :LRDAGISQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30577 # 1lxjA.191.66 read from T0287.t06.many.frag # found chain 1lxjA in training set T0287 191 :MKEKGVQNA 1lxjA 67 :GHEKGYVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30578 # 1u4bA.191.518 read from T0287.t06.many.frag # found chain 1u4bA in training set Warning: unaligning (T0287)A199 (1u4bA)H823 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 1u4bA 815 :LKEERLQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30579 # 1pyaB.191.211 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 191 :MKEKGVQNA 1pyaB 294 :LEKMGYKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30580 # 1jr2A.191.175 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 191 :MKEKGVQNA 1jr2A 155 :LKDKGIAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=30581 # 1s3rA.191.283 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)Q197 (1s3rA)N287 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1s3rA 281 :LINRGV T0287 198 :NA 1s3rA 288 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30583 # 2c71A.191.188 read from T0287.t06.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)A199 (2c71A)D672 because D (zeta) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 2c71A 664 :FTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30584 # 1y42X.191.149 read from T0287.t06.many.frag # found chain 1y42X in template set Warning: unaligning (T0287)K194 (1y42X)R184 because G (3-10) conformation "forbidden" or filtered. T0287 191 :MKE 1y42X 181 :MRA T0287 195 :GVQNA 1y42X 185 :GYEAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30586 # 1nofA.191.119 read from T0287.t06.many.frag # found chain 1nofA in training set T0287 191 :MKEKGVQNA 1nofA 150 :MQTNGAPLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30587 # 1qddA.191.65 read from T0287.t06.many.frag # found chain 1qddA in training set T0287 191 :MKEKGVQNA 1qddA 66 :IKESGTDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30588 # 2igd.191.38 read from T0287.t06.many.frag # found chain 2igd in training set Warning: unaligning (T0287)N198 (2igd)G46 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 2igd 39 :ANDNGVD T0287 199 :A 2igd 47 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30590 # 1nuuA.191.226 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)N198 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1nuuA 227 :IKDHGLY T0287 199 :A 1nuuA 235 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=30592 # command:# Prefix for output files set to # command:# Printing 560 template chains to Template.atoms # Printed template library # command:# Prefix for output files set to decoys/ # command:CPU_time= 578.468 sec, elapsed time= 2023.38 sec) # command:# Setting HealPeptide to 0.3 # Setting JiggleSubtree to 0.3 # Setting JiggleSegment to 0.3 # Setting OptSubtree to 1 # Setting OptSegment to 1 # Setting OptAllSegments to 0.3 # Setting ShiftSubtree to 0.3 # Setting ShiftSegment to 0.3 # Setting TweakPhiSubtree to 0.3 # Setting TweakPhiSegment to 0.3 # Setting TweakPsiSubtree to 0.3 # Setting TweakPsiSegment to 0.3 # Setting TweakPsiPhiSubtree to 0.3 # Setting TweakPsiPhiSegment to 0.3 # Setting TweakHbondSubtree to 0.3 # Setting TweakHbondSegment to 0.3 # Setting TweakMultimer to 0.3 # Setting TweakPeptide to 0.3 # Setting OneRotamer to 1 # Setting ClashingRotamer to 1 # Setting ClusteredRotamer to 2 # Setting ReduceBreak to 5 # Setting CloseGap to 5 # Setting HealGap to 5 # Setting MoveGap to 5 # Setting ReduceConstraint to 5 # Setting ImproveSSBond to 0 # Setting InsertSSBond to 0 # Setting InsertAlignment to 1 # Setting InsertSpecificFragment to 20 # Setting InsertFragment to 5 # Setting TwoFragment to 5 # Setting CrossOver to 3 # Setting CrossAndInsert to 5 # Setting ReduceClash to 5 # Initial Method pseudocounts set to # HealPeptide 0.3 # JiggleSubtree 0.3 # JiggleSegment 0.3 # OptSubtree 1 # OptSegment 1 # OptAllSegments 0.3 # ShiftSubtree 0.3 # ShiftSegment 0.3 # TweakPhiSubtree 0.3 # TweakPhiSegment 0.3 # TweakPsiSubtree 0.3 # TweakPsiSegment 0.3 # TweakPsiPhiSubtree 0.3 # TweakPsiPhiSegment 0.3 # TweakHbondSubtree 0.3 # TweakHbondSegment 0.3 # TweakMultimer 0.3 # TweakPeptide 0.3 # OneRotamer 1 # ClashingRotamer 1 # ClusteredRotamer 2 # ReduceBreak 5 # CloseGap 5 # HealGap 5 # MoveGap 5 # ReduceConstraint 5 # ImproveSSBond 0 # InsertSSBond 0 # InsertAlignment 1 # InsertSpecificFragment 20 # InsertFragment 5 # TwoFragment 5 # CrossOver 3 # CrossAndInsert 5 # ReduceClash 5 # command:# OptConform to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 1 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 0.3 * pred_alpha2k + 0.3 * pred_alpha04 + 1 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will do 5 iterations of optimization # iteration 0 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try7-al6 at pool[5] 238.898 cost/residue, 226 clashes 0.263858 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # generation 1: best score out of 20: T0287.try7-al8 234.754 cost/residue, 219 clashes 0.263858 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 1 / 1 = 1.00000 0.07886 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 7 = 0.00000 0.00000 ## ReduceBreak 0 0 2 / 7 = 0.28571 0.53349 ## CloseGap 1 3 2 / 6 = 0.33333 1.10150 ## HealGap 0 1 0 / 6 = 0.00000 0.00000 ## MoveGap 1 2 3 / 10 = 0.30000 0.41582 ## ReduceConstraint 0 0 0 / 5 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 1 / 15 = 0.06667 0.27623 ## InsertFragment 0 0 0 / 14 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 7 = 0.00000 0.00000 ## CrossOver 0 1 1 / 3 = 0.33333 0.68657 ## CrossAndInsert 1 0 0 / 3 = 0.00000 0.00000 ## ReduceClash 0 0 2 / 6 = 0.33333 4.25885 # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # generation 2: best score out of 20: T0287.try7-al8 231.08049 cost/residue, 219 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 1 / 1 = 1.00000 0.07886 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 0 2 / 10 = 0.20000 0.37345 ## CloseGap 1 11 5 / 16 = 0.31250 0.87550 ## HealGap 0 5 0 / 13 = 0.00000 0.00000 ## MoveGap 1 2 3 / 18 = 0.16667 0.23101 ## ReduceConstraint 0 0 0 / 9 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 1 / 44 = 0.02273 0.09417 ## InsertFragment 0 1 0 / 21 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 11 = 0.00000 0.00000 ## CrossOver 0 2 1 / 5 = 0.20000 0.41194 ## CrossAndInsert 1 0 0 / 11 = 0.00000 0.00000 ## ReduceClash 0 0 2 / 11 = 0.18182 2.32301 # generation 3: best score out of 20: T0287.try7-al8 231.08049 cost/residue, 219 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.03943 ## TweakPsiSegment 0 0 1 / 1 = 1.00000 0.03751 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 12 = 0.00000 0.00000 ## ReduceBreak 0 1 2 / 23 = 0.08696 0.16237 ## CloseGap 1 16 5 / 22 = 0.22727 0.63673 ## HealGap 0 7 0 / 18 = 0.00000 0.00000 ## MoveGap 1 3 4 / 23 = 0.17391 0.21693 ## ReduceConstraint 0 0 0 / 15 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 1 / 65 = 0.01538 0.06374 ## InsertFragment 0 1 0 / 25 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 16 = 0.00000 0.00000 ## CrossOver 0 2 1 / 10 = 0.10000 0.20597 ## CrossAndInsert 1 0 0 / 21 = 0.00000 0.00000 ## ReduceClash 0 0 2 / 20 = 0.10000 1.27765 # Closing gap before 1 next to short segment # generation 4: best score out of 20: T0287.try7-al8 231.08037 cost/residue, 219 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.03943 ## TweakPsiSegment 0 1 2 / 2 = 1.00000 0.01881 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 15 = 0.00000 0.00000 ## ReduceBreak 0 1 2 / 26 = 0.07692 0.14363 ## CloseGap 1 21 6 / 29 = 0.20690 0.60972 ## HealGap 0 8 0 / 23 = 0.00000 0.00000 ## MoveGap 1 3 4 / 30 = 0.13333 0.16631 ## ReduceConstraint 0 0 0 / 22 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 97 = 0.01031 0.04272 ## InsertFragment 0 1 0 / 32 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 18 = 0.00000 0.00000 ## CrossOver 0 3 1 / 15 = 0.06667 0.13731 ## CrossAndInsert 1 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 0 2 / 27 = 0.07407 0.94641 # generation 5: best score out of 20: T0287.try7-al8 229.97995 cost/residue, 255 clashes 0.12626 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.03943 ## TweakPsiSegment 0 1 2 / 3 = 0.66667 0.01254 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 4 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 5 2 / 9 = 0.22222 0.04048 ## ClashingRotamer 0 1 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 17 = 0.00000 0.00000 ## ReduceBreak 0 1 2 / 31 = 0.06452 0.12047 ## CloseGap 1 24 6 / 40 = 0.15000 0.44205 ## HealGap 0 10 0 / 27 = 0.00000 0.00000 ## MoveGap 1 3 4 / 36 = 0.11111 0.13860 ## ReduceConstraint 0 0 0 / 28 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 121 = 0.00826 0.03424 ## InsertFragment 0 1 0 / 36 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 28 = 0.00000 0.00000 ## CrossOver 0 3 1 / 19 = 0.05263 0.10841 ## CrossAndInsert 1 2 1 / 34 = 0.02941 0.04852 ## ReduceClash 0 0 2 / 35 = 0.05714 0.73009 # generation 6: best score out of 20: T0287.try7-al8 229.97995 cost/residue, 255 clashes 0.12626 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 2 / 4 = 0.50000 0.02039 ## TweakPsiSegment 0 1 2 / 4 = 0.50000 0.00941 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 4 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 1 = 1.00000 0.00569 ## OneRotamer 0 5 2 / 9 = 0.22222 0.04048 ## ClashingRotamer 0 1 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 21 = 0.00000 0.00000 ## ReduceBreak 0 1 2 / 37 = 0.05405 0.10093 ## CloseGap 1 25 6 / 49 = 0.12245 0.36086 ## HealGap 0 13 0 / 32 = 0.00000 0.00000 ## MoveGap 1 4 5 / 50 = 0.10000 0.11460 ## ReduceConstraint 0 0 0 / 34 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 142 = 0.00704 0.02918 ## InsertFragment 0 1 0 / 43 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 30 = 0.00000 0.00000 ## CrossOver 0 4 1 / 22 = 0.04545 0.09362 ## CrossAndInsert 1 3 2 / 39 = 0.05128 0.06275 ## ReduceClash 0 1 2 / 43 = 0.04651 0.59426 # generation 7: best score out of 20: T0287.try7-al8 229.82628 cost/residue, 278 clashes 0.10090 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 3 / 6 = 0.50000 0.01365 ## TweakPsiSegment 0 1 2 / 5 = 0.40000 0.00753 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 4 = 0.00000 0.00000 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 1 = 1.00000 0.00569 ## OneRotamer 0 5 2 / 10 = 0.20000 0.03643 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 22 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 44 = 0.04545 0.08487 ## CloseGap 1 26 6 / 57 = 0.10526 0.31021 ## HealGap 0 17 1 / 40 = 0.02500 0.00047 ## MoveGap 1 4 5 / 57 = 0.08772 0.10052 ## ReduceConstraint 1 0 0 / 38 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 167 = 0.00599 0.02481 ## InsertFragment 0 2 0 / 47 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 34 = 0.00000 0.00000 ## CrossOver 1 4 1 / 23 = 0.04348 0.08955 ## CrossAndInsert 1 3 2 / 42 = 0.04762 0.05827 ## ReduceClash 0 2 3 / 53 = 0.05660 0.50437 # generation 8: best score out of 20: T0287.try7-al8 229.82607 cost/residue, 277 clashes 0.10083 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 6 4 / 7 = 0.57143 0.01172 ## TweakPsiSegment 0 1 2 / 5 = 0.40000 0.00753 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 4 = 0.00000 0.00000 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 1 = 1.00000 0.00569 ## OneRotamer 0 6 3 / 12 = 0.25000 0.03102 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 23 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 52 = 0.03846 0.07182 ## CloseGap 1 29 7 / 71 = 0.09859 0.24904 ## HealGap 0 19 2 / 44 = 0.04545 0.00044 ## MoveGap 1 4 5 / 61 = 0.08197 0.09393 ## ReduceConstraint 1 0 0 / 40 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 188 = 0.00532 0.02204 ## InsertFragment 0 3 1 / 51 = 0.01961 0.00139 ## TwoFragment 0 0 0 / 44 = 0.00000 0.00000 ## CrossOver 1 5 2 / 26 = 0.07692 0.08949 ## CrossAndInsert 1 4 2 / 47 = 0.04255 0.05207 ## ReduceClash 0 3 3 / 65 = 0.04615 0.41125 # generation 9: best score out of 20: T0287.try7-al8 229.82516 cost/residue, 277 clashes 0.10082 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 7 4 / 9 = 0.44444 0.00911 ## TweakPsiSegment 0 1 2 / 6 = 0.33333 0.00627 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 4 = 0.00000 0.00000 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 3 = 0.33333 0.00190 ## OneRotamer 0 6 3 / 13 = 0.23077 0.02863 ## ClashingRotamer 0 2 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 26 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 57 = 0.03509 0.06552 ## CloseGap 1 34 8 / 80 = 0.10000 0.22104 ## HealGap 0 23 2 / 51 = 0.03922 0.00038 ## MoveGap 1 4 5 / 66 = 0.07576 0.08682 ## ReduceConstraint 1 0 0 / 45 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 211 = 0.00474 0.01964 ## InsertFragment 0 4 1 / 57 = 0.01754 0.00124 ## TwoFragment 0 0 0 / 49 = 0.00000 0.00000 ## CrossOver 2 5 2 / 27 = 0.07407 0.08617 ## CrossAndInsert 1 4 2 / 49 = 0.04082 0.04995 ## ReduceClash 0 3 3 / 77 = 0.03896 0.34716 # generation 10: best score out of 20: T0287.try7-al8 229.79442 cost/residue, 270 clashes 0.10083 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 7 4 / 9 = 0.44444 0.00911 ## TweakPsiSegment 0 1 2 / 6 = 0.33333 0.00627 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 4 = 0.00000 0.00000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 2 / 4 = 0.50000 0.00150 ## OneRotamer 0 6 3 / 13 = 0.23077 0.02863 ## ClashingRotamer 0 2 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 29 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 61 = 0.03279 0.06122 ## CloseGap 1 42 10 / 92 = 0.10870 0.19222 ## HealGap 0 23 2 / 57 = 0.03509 0.00034 ## MoveGap 1 4 5 / 75 = 0.06667 0.07640 ## ReduceConstraint 1 0 0 / 55 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 233 = 0.00429 0.01778 ## InsertFragment 0 4 1 / 60 = 0.01667 0.00118 ## TwoFragment 0 0 0 / 53 = 0.00000 0.00000 ## CrossOver 2 6 3 / 33 = 0.09091 0.07148 ## CrossAndInsert 1 4 2 / 54 = 0.03704 0.04532 ## ReduceClash 0 3 3 / 86 = 0.03488 0.31083 # generation 11: best score out of 20: T0287.try7-al8 229.26576 cost/residue, 268 clashes 0.10083 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 7 4 / 9 = 0.44444 0.00911 ## TweakPsiSegment 0 2 2 / 7 = 0.28571 0.00538 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 4 = 0.00000 0.00000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 7 = 0.42857 0.00166 ## OneRotamer 0 6 3 / 15 = 0.20000 0.02481 ## ClashingRotamer 0 2 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 32 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 69 = 0.02899 0.05412 ## CloseGap 1 48 12 / 98 = 0.12245 0.18046 ## HealGap 0 23 2 / 61 = 0.03279 0.00032 ## MoveGap 1 4 5 / 82 = 0.06098 0.06988 ## ReduceConstraint 1 0 0 / 63 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 254 = 0.00394 0.01631 ## InsertFragment 0 4 1 / 61 = 0.01639 0.00116 ## TwoFragment 0 0 0 / 58 = 0.00000 0.00000 ## CrossOver 2 8 5 / 38 = 0.13158 0.08049 ## CrossAndInsert 1 4 2 / 62 = 0.03226 0.03947 ## ReduceClash 0 3 3 / 99 = 0.03030 0.27002 # generation 12: best score out of 20: T0287.try7-al8 228.91420 cost/residue, 262 clashes 0.10083 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 9 5 / 12 = 0.41667 0.00709 ## TweakPsiSegment 0 2 2 / 8 = 0.25000 0.00470 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 5 0 / 7 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 2 0 / 6 = 0.00000 0.00000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 7 = 0.42857 0.00166 ## OneRotamer 0 7 4 / 16 = 0.25000 0.04524 ## ClashingRotamer 0 2 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 34 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 75 = 0.02667 0.04979 ## CloseGap 1 55 15 / 113 = 0.13274 0.15663 ## HealGap 0 23 2 / 66 = 0.03030 0.00029 ## MoveGap 1 4 5 / 89 = 0.05618 0.06438 ## ReduceConstraint 1 0 0 / 65 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 277 = 0.00361 0.01496 ## InsertFragment 0 4 1 / 62 = 0.01613 0.00114 ## TwoFragment 0 0 0 / 60 = 0.00000 0.00000 ## CrossOver 3 8 5 / 44 = 0.11364 0.06951 ## CrossAndInsert 1 5 2 / 69 = 0.02899 0.03547 ## ReduceClash 0 3 3 / 112 = 0.02679 0.23867 # generation 13: best score out of 20: T0287.try7-al8 228.91420 cost/residue, 262 clashes 0.10083 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 1 = 1.00000 0.10628 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 6 / 13 = 0.46154 0.00660 ## TweakPsiSegment 0 3 3 / 10 = 0.30000 0.00398 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 5 0 / 7 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 2 0 / 6 = 0.00000 0.00000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 3 / 7 = 0.42857 0.00166 ## OneRotamer 0 10 5 / 19 = 0.26316 0.04574 ## ClashingRotamer 0 2 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 36 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 80 = 0.02500 0.04668 ## CloseGap 1 60 16 / 121 = 0.13223 0.14628 ## HealGap 0 25 2 / 69 = 0.02899 0.00028 ## MoveGap 1 4 5 / 98 = 0.05102 0.05847 ## ReduceConstraint 1 0 0 / 70 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 292 = 0.00342 0.01419 ## InsertFragment 0 4 1 / 64 = 0.01562 0.00111 ## TwoFragment 0 0 0 / 68 = 0.00000 0.00000 ## CrossOver 3 9 5 / 53 = 0.09434 0.05771 ## CrossAndInsert 1 5 2 / 74 = 0.02703 0.03307 ## ReduceClash 0 3 3 / 129 = 0.02326 0.20722 # generation 14: best score out of 20: T0287.try7-al8 228.91420 cost/residue, 262 clashes 0.10083 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 2 / 6 = 0.33333 0.01825 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 11 8 / 15 = 0.53333 0.00604 ## TweakPsiSegment 0 4 4 / 12 = 0.33333 0.00334 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 5 0 / 7 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 2 0 / 6 = 0.00000 0.00000 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 3 / 8 = 0.37500 0.00145 ## OneRotamer 0 11 5 / 23 = 0.21739 0.03778 ## ClashingRotamer 0 2 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 37 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 83 = 0.02410 0.04499 ## CloseGap 1 65 17 / 128 = 0.13281 0.13829 ## HealGap 0 26 2 / 71 = 0.02817 0.00027 ## MoveGap 1 4 5 / 102 = 0.04902 0.05618 ## ReduceConstraint 1 0 0 / 76 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 314 = 0.00318 0.01320 ## InsertFragment 0 4 1 / 71 = 0.01408 0.00100 ## TwoFragment 0 0 0 / 77 = 0.00000 0.00000 ## CrossOver 3 9 5 / 57 = 0.08772 0.05366 ## CrossAndInsert 1 5 2 / 81 = 0.02469 0.03021 ## ReduceClash 0 3 3 / 136 = 0.02206 0.19656 # generation 15: best score out of 20: T0287.try7-al8 228.87119 cost/residue, 255 clashes 0.10198 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 2 / 10 = 0.20000 0.01095 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 11 8 / 15 = 0.53333 0.00604 ## TweakPsiSegment 0 4 4 / 12 = 0.33333 0.00334 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 6 1 / 8 = 0.12500 0.01082 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 7 = 0.00000 0.00000 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 3 / 8 = 0.37500 0.00145 ## OneRotamer 0 11 5 / 25 = 0.20000 0.03476 ## ClashingRotamer 0 2 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 40 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 92 = 0.02174 0.04059 ## CloseGap 1 71 18 / 136 = 0.13235 0.13016 ## HealGap 0 28 2 / 76 = 0.02632 0.00026 ## MoveGap 1 4 5 / 111 = 0.04505 0.05162 ## ReduceConstraint 1 0 0 / 83 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 324 = 0.00309 0.01279 ## InsertFragment 0 4 1 / 74 = 0.01351 0.00096 ## TwoFragment 0 0 0 / 84 = 0.00000 0.00000 ## CrossOver 3 9 5 / 64 = 0.07812 0.04779 ## CrossAndInsert 1 5 2 / 86 = 0.02326 0.02846 ## ReduceClash 0 3 3 / 149 = 0.02013 0.17941 # generation 16: best score out of 20: T0287.try7-al8 228.87119 cost/residue, 255 clashes 0.10198 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 2 / 12 = 0.16667 0.00913 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 11 8 / 15 = 0.53333 0.00604 ## TweakPsiSegment 0 4 4 / 12 = 0.33333 0.00334 ## TweakPsiPhiSubtree 0 2 1 / 2 = 0.50000 0.03540 ## TweakPsiPhiSegment 2 8 1 / 10 = 0.10000 0.00866 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 8 = 0.00000 0.00000 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 3 / 10 = 0.30000 0.00116 ## OneRotamer 0 12 5 / 28 = 0.17857 0.03104 ## ClashingRotamer 0 2 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 2 4 0 / 40 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 97 = 0.02062 0.03850 ## CloseGap 1 79 19 / 144 = 0.13194 0.12294 ## HealGap 0 28 2 / 80 = 0.02500 0.00024 ## MoveGap 1 4 5 / 119 = 0.04202 0.04815 ## ReduceConstraint 1 0 0 / 85 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 346 = 0.00289 0.01198 ## InsertFragment 0 4 1 / 79 = 0.01266 0.00090 ## TwoFragment 0 0 0 / 93 = 0.00000 0.00000 ## CrossOver 3 9 5 / 68 = 0.07353 0.04498 ## CrossAndInsert 1 5 2 / 93 = 0.02151 0.02632 ## ReduceClash 0 3 3 / 158 = 0.01899 0.16919 # generation 17: best score out of 20: T0287.try7-al8 228.83517 cost/residue, 254 clashes 0.10236 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 2 / 14 = 0.14286 0.00782 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 12 9 / 16 = 0.56250 0.00567 ## TweakPsiSegment 0 4 4 / 14 = 0.28571 0.00286 ## TweakPsiPhiSubtree 0 3 2 / 5 = 0.40000 0.01939 ## TweakPsiPhiSegment 2 8 1 / 11 = 0.09091 0.00787 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 9 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 3 / 10 = 0.30000 0.00116 ## OneRotamer 0 13 6 / 29 = 0.20690 0.03172 ## ClashingRotamer 0 2 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 2 4 0 / 40 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 99 = 0.02020 0.03772 ## CloseGap 1 88 20 / 156 = 0.12821 0.11349 ## HealGap 0 28 2 / 84 = 0.02381 0.00023 ## MoveGap 1 4 5 / 130 = 0.03846 0.04408 ## ReduceConstraint 1 0 0 / 92 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 363 = 0.00275 0.01141 ## InsertFragment 0 4 1 / 87 = 0.01149 0.00081 ## TwoFragment 0 0 0 / 95 = 0.00000 0.00000 ## CrossOver 3 9 5 / 71 = 0.07042 0.04308 ## CrossAndInsert 1 5 2 / 101 = 0.01980 0.02423 ## ReduceClash 0 3 3 / 169 = 0.01775 0.15817 # generation 18: best score out of 20: T0287.try7-al8 228.81514 cost/residue, 256 clashes 0.10339 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 2 / 15 = 0.13333 0.00730 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 12 9 / 17 = 0.52941 0.00533 ## TweakPsiSegment 0 4 4 / 14 = 0.28571 0.00286 ## TweakPsiPhiSubtree 0 6 2 / 12 = 0.16667 0.00808 ## TweakPsiPhiSegment 2 9 2 / 13 = 0.15385 0.01211 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 9 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 3 / 11 = 0.27273 0.00106 ## OneRotamer 0 15 7 / 36 = 0.19444 0.02667 ## ClashingRotamer 0 2 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 2 4 0 / 42 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 104 = 0.01923 0.03591 ## CloseGap 1 93 20 / 165 = 0.12121 0.10730 ## HealGap 0 28 2 / 85 = 0.02353 0.00023 ## MoveGap 1 4 5 / 139 = 0.03597 0.04122 ## ReduceConstraint 1 0 0 / 96 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 385 = 0.00260 0.01076 ## InsertFragment 0 4 1 / 90 = 0.01111 0.00079 ## TwoFragment 0 0 0 / 100 = 0.00000 0.00000 ## CrossOver 3 10 6 / 78 = 0.07692 0.03937 ## CrossAndInsert 1 5 2 / 105 = 0.01905 0.02331 ## ReduceClash 0 3 3 / 179 = 0.01676 0.14934 # generation 19: best score out of 20: T0287.try7-al8 228.65804 cost/residue, 253 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 2 / 15 = 0.13333 0.00730 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 13 9 / 19 = 0.47368 0.00477 ## TweakPsiSegment 0 4 4 / 14 = 0.28571 0.00286 ## TweakPsiPhiSubtree 0 6 2 / 15 = 0.13333 0.00646 ## TweakPsiPhiSegment 2 11 3 / 20 = 0.15000 0.01673 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 9 = 0.00000 0.00000 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 4 / 14 = 0.28571 0.00245 ## OneRotamer 0 16 8 / 39 = 0.20513 0.02560 ## ClashingRotamer 0 2 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 2 4 0 / 43 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 107 = 0.01869 0.03490 ## CloseGap 1 101 22 / 174 = 0.12644 0.10182 ## HealGap 0 28 2 / 89 = 0.02247 0.00022 ## MoveGap 1 4 5 / 149 = 0.03356 0.03846 ## ReduceConstraint 1 0 0 / 101 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 397 = 0.00252 0.01044 ## InsertFragment 0 4 1 / 92 = 0.01087 0.00077 ## TwoFragment 0 0 0 / 100 = 0.00000 0.00000 ## CrossOver 3 10 6 / 85 = 0.07059 0.03612 ## CrossAndInsert 1 5 2 / 110 = 0.01818 0.02225 ## ReduceClash 0 3 3 / 192 = 0.01562 0.13923 # generation 20: best score out of 20: T0287.try7-al8 228.51096 cost/residue, 246 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 3 / 18 = 0.16667 0.00679 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 14 10 / 21 = 0.47619 0.00433 ## TweakPsiSegment 0 4 4 / 15 = 0.26667 0.00267 ## TweakPsiPhiSubtree 0 6 2 / 16 = 0.12500 0.00606 ## TweakPsiPhiSegment 2 14 4 / 27 = 0.14815 0.01363 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 10 = 0.00000 0.00000 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 4 / 15 = 0.26667 0.00229 ## OneRotamer 0 18 10 / 46 = 0.21739 0.02952 ## ClashingRotamer 0 2 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 2 4 0 / 45 = 0.00000 0.00000 ## ReduceBreak 0 2 2 / 113 = 0.01770 0.03305 ## CloseGap 1 104 22 / 178 = 0.12360 0.09953 ## HealGap 0 29 2 / 94 = 0.02128 0.00021 ## MoveGap 1 4 5 / 158 = 0.03165 0.03627 ## ReduceConstraint 1 0 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 410 = 0.00244 0.01011 ## InsertFragment 0 4 1 / 98 = 0.01020 0.00072 ## TwoFragment 0 0 0 / 101 = 0.00000 0.00000 ## CrossOver 3 10 6 / 88 = 0.06818 0.03489 ## CrossAndInsert 1 5 2 / 114 = 0.01754 0.02147 ## ReduceClash 0 3 3 / 201 = 0.01493 0.13299 # generation 21: best score out of 20: T0287.try7-al8 228.46490 cost/residue, 251 clashes 0.10339 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 19 = 0.21053 0.01056 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 15 10 / 22 = 0.45455 0.00413 ## TweakPsiSegment 0 4 4 / 15 = 0.26667 0.00267 ## TweakPsiPhiSubtree 0 7 2 / 18 = 0.11111 0.00539 ## TweakPsiPhiSegment 2 17 6 / 31 = 0.19355 0.01231 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 10 = 0.00000 0.00000 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 5 / 17 = 0.29412 0.00213 ## OneRotamer 0 20 12 / 50 = 0.24000 0.03467 ## ClashingRotamer 0 2 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 47 = 0.02128 0.00127 ## ReduceBreak 0 2 2 / 115 = 0.01739 0.03247 ## CloseGap 1 109 24 / 188 = 0.12766 0.09431 ## HealGap 0 29 2 / 95 = 0.02105 0.00020 ## MoveGap 1 4 5 / 164 = 0.03049 0.03494 ## ReduceConstraint 1 0 0 / 109 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 432 = 0.00231 0.00959 ## InsertFragment 0 4 2 / 105 = 0.01905 0.00074 ## TwoFragment 0 0 0 / 102 = 0.00000 0.00000 ## CrossOver 3 12 6 / 98 = 0.06122 0.03133 ## CrossAndInsert 1 5 2 / 120 = 0.01667 0.02039 ## ReduceClash 0 3 3 / 213 = 0.01408 0.12550 # Closing gap before 141 without wiggling. # generation 22: best score out of 20: T0287.try7-al8 228.26933 cost/residue, 244 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 5 / 20 = 0.25000 0.01064 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 15 10 / 22 = 0.45455 0.00413 ## TweakPsiSegment 0 4 4 / 17 = 0.23529 0.00236 ## TweakPsiPhiSubtree 0 7 2 / 19 = 0.10526 0.00510 ## TweakPsiPhiSegment 2 17 6 / 34 = 0.17647 0.01122 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 10 = 0.00000 0.00000 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 6 / 18 = 0.33333 0.00204 ## OneRotamer 0 24 15 / 60 = 0.25000 0.04063 ## ClashingRotamer 0 2 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 47 = 0.02128 0.00127 ## ReduceBreak 0 2 2 / 119 = 0.01681 0.03138 ## CloseGap 1 119 24 / 204 = 0.11765 0.08691 ## HealGap 0 29 2 / 97 = 0.02062 0.00020 ## MoveGap 1 4 5 / 167 = 0.02994 0.03431 ## ReduceConstraint 1 0 0 / 113 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 453 = 0.00221 0.00915 ## InsertFragment 0 4 2 / 111 = 0.01802 0.00070 ## TwoFragment 0 0 0 / 106 = 0.00000 0.00000 ## CrossOver 3 13 7 / 101 = 0.06931 0.03073 ## CrossAndInsert 2 5 2 / 125 = 0.01600 0.01958 ## ReduceClash 0 3 3 / 222 = 0.01351 0.12041 # generation 23: best score out of 20: T0287.try7-al8 228.20862 cost/residue, 239 clashes 0.10325 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 6 / 24 = 0.25000 0.01018 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 16 11 / 23 = 0.47826 0.00400 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 8 2 / 20 = 0.10000 0.00485 ## TweakPsiPhiSegment 2 19 9 / 40 = 0.22500 0.01248 ## TweakHbondSubtree 0 2 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 10 = 0.00000 0.00000 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 6 / 18 = 0.33333 0.00204 ## OneRotamer 0 32 19 / 76 = 0.25000 0.03706 ## ClashingRotamer 0 2 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 53 = 0.01887 0.00112 ## ReduceBreak 0 2 2 / 124 = 0.01613 0.03012 ## CloseGap 1 122 24 / 209 = 0.11483 0.08483 ## HealGap 0 29 2 / 98 = 0.02041 0.00020 ## MoveGap 1 4 5 / 171 = 0.02924 0.03351 ## ReduceConstraint 1 0 0 / 116 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 466 = 0.00215 0.00889 ## InsertFragment 0 4 2 / 115 = 0.01739 0.00068 ## TwoFragment 0 0 0 / 109 = 0.00000 0.00000 ## CrossOver 3 13 7 / 105 = 0.06667 0.02955 ## CrossAndInsert 2 5 2 / 131 = 0.01527 0.01868 ## ReduceClash 0 3 3 / 230 = 0.01304 0.11622 # generation 24: best score out of 20: T0287.try7-al8 228.10318 cost/residue, 249 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 6 / 25 = 0.24000 0.00977 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 17 12 / 25 = 0.48000 0.00392 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 9 2 / 22 = 0.09091 0.00441 ## TweakPsiPhiSegment 3 20 9 / 42 = 0.21429 0.01189 ## TweakHbondSubtree 0 2 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 10 = 0.00000 0.00000 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 6 / 18 = 0.33333 0.00204 ## OneRotamer 0 33 20 / 84 = 0.23810 0.03551 ## ClashingRotamer 0 2 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 54 = 0.01852 0.00110 ## ReduceBreak 0 2 2 / 134 = 0.01493 0.02787 ## CloseGap 1 130 26 / 221 = 0.11765 0.08023 ## HealGap 0 29 2 / 106 = 0.01887 0.00018 ## MoveGap 1 4 5 / 180 = 0.02778 0.03183 ## ReduceConstraint 1 0 0 / 117 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 482 = 0.00207 0.00860 ## InsertFragment 0 4 2 / 118 = 0.01695 0.00066 ## TwoFragment 0 0 0 / 110 = 0.00000 0.00000 ## CrossOver 3 13 7 / 107 = 0.06542 0.02900 ## CrossAndInsert 2 5 2 / 139 = 0.01439 0.01761 ## ReduceClash 0 3 3 / 236 = 0.01271 0.11327 # generation 25: best score out of 20: T0287.try7-al8 228.02158 cost/residue, 248 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 6 / 27 = 0.22222 0.00905 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 19 14 / 27 = 0.51852 0.00920 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 9 2 / 23 = 0.08696 0.00421 ## TweakPsiPhiSegment 3 21 11 / 48 = 0.22917 0.01067 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 10 = 0.00000 0.00000 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 6 / 20 = 0.30000 0.00184 ## OneRotamer 0 36 24 / 95 = 0.25263 0.03493 ## ClashingRotamer 0 2 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 55 = 0.01818 0.00108 ## ReduceBreak 0 2 2 / 137 = 0.01460 0.02726 ## CloseGap 1 136 29 / 231 = 0.12554 0.07679 ## HealGap 0 29 2 / 108 = 0.01852 0.00018 ## MoveGap 1 4 5 / 183 = 0.02732 0.03131 ## ReduceConstraint 1 0 0 / 120 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 494 = 0.00202 0.00839 ## InsertFragment 0 4 2 / 126 = 0.01587 0.00062 ## TwoFragment 0 0 0 / 114 = 0.00000 0.00000 ## CrossOver 3 14 7 / 110 = 0.06364 0.02821 ## CrossAndInsert 2 5 2 / 146 = 0.01370 0.01676 ## ReduceClash 0 3 3 / 249 = 0.01205 0.10736 # generation 26: best score out of 20: T0287.try7-al8 227.68065 cost/residue, 243 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 7 / 29 = 0.24138 0.01209 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 23 18 / 34 = 0.52941 0.01010 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 9 3 / 25 = 0.12000 0.00409 ## TweakPsiPhiSegment 3 21 11 / 49 = 0.22449 0.01045 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 10 = 0.00000 0.00000 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 6 / 21 = 0.28571 0.00175 ## OneRotamer 0 37 25 / 102 = 0.24510 0.03667 ## ClashingRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 59 = 0.01695 0.00101 ## ReduceBreak 0 2 2 / 139 = 0.01439 0.02687 ## CloseGap 1 141 29 / 238 = 0.12185 0.07453 ## HealGap 0 30 3 / 111 = 0.02703 0.00018 ## MoveGap 1 4 5 / 186 = 0.02688 0.03081 ## ReduceConstraint 1 0 0 / 125 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 507 = 0.00197 0.00817 ## InsertFragment 0 4 2 / 130 = 0.01538 0.00060 ## TwoFragment 0 0 0 / 120 = 0.00000 0.00000 ## CrossOver 3 15 8 / 115 = 0.06957 0.02724 ## CrossAndInsert 3 5 2 / 150 = 0.01333 0.01632 ## ReduceClash 0 3 3 / 265 = 0.01132 0.10087 # Closing gap before 141 without wiggling. # generation 27: best score out of 20: T0287.try7-al8 227.46750 cost/residue, 240 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 8 / 31 = 0.25806 0.01216 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 25 18 / 36 = 0.50000 0.00954 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 9 3 / 26 = 0.11538 0.00394 ## TweakPsiPhiSegment 4 21 11 / 50 = 0.22000 0.01024 ## TweakHbondSubtree 0 2 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 4 1 / 11 = 0.09091 0.00354 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 6 / 22 = 0.27273 0.00167 ## OneRotamer 0 41 27 / 119 = 0.22689 0.03369 ## ClashingRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 60 = 0.01667 0.00099 ## ReduceBreak 0 2 2 / 146 = 0.01370 0.02558 ## CloseGap 1 143 30 / 242 = 0.12397 0.07330 ## HealGap 0 32 4 / 115 = 0.03478 0.00017 ## MoveGap 1 4 5 / 194 = 0.02577 0.02954 ## ReduceConstraint 1 0 0 / 130 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 522 = 0.00192 0.00794 ## InsertFragment 0 4 2 / 131 = 0.01527 0.00059 ## TwoFragment 0 0 0 / 129 = 0.00000 0.00000 ## CrossOver 3 15 8 / 121 = 0.06612 0.02589 ## CrossAndInsert 3 5 2 / 153 = 0.01307 0.01600 ## ReduceClash 0 3 3 / 272 = 0.01103 0.09828 # generation 28: best score out of 20: T0287.try7-al8 227.20044 cost/residue, 236 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 8 / 32 = 0.25000 0.01178 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 27 20 / 40 = 0.50000 0.00862 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 10 4 / 28 = 0.14286 0.00428 ## TweakPsiPhiSegment 4 23 12 / 52 = 0.23077 0.01103 ## TweakHbondSubtree 0 2 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 5 3 / 21 = 0.14286 0.00309 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 6 / 22 = 0.27273 0.00167 ## OneRotamer 0 47 31 / 129 = 0.24031 0.03624 ## ClashingRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 61 = 0.01639 0.00098 ## ReduceBreak 0 2 2 / 149 = 0.01342 0.02506 ## CloseGap 1 144 30 / 248 = 0.12097 0.07152 ## HealGap 0 33 4 / 122 = 0.03279 0.00016 ## MoveGap 1 4 5 / 198 = 0.02525 0.02894 ## ReduceConstraint 1 0 0 / 135 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 533 = 0.00188 0.00777 ## InsertFragment 0 4 2 / 135 = 0.01481 0.00058 ## TwoFragment 0 0 0 / 132 = 0.00000 0.00000 ## CrossOver 3 15 8 / 126 = 0.06349 0.02486 ## CrossAndInsert 3 5 2 / 156 = 0.01282 0.01569 ## ReduceClash 0 3 3 / 286 = 0.01049 0.09347 # generation 29: best score out of 20: T0287.try7-al8 227.14435 cost/residue, 237 clashes 0.10295 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 9 / 38 = 0.23684 0.01075 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 27 20 / 42 = 0.47619 0.00821 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 10 5 / 29 = 0.17241 0.00428 ## TweakPsiPhiSegment 6 23 13 / 56 = 0.23214 0.01033 ## TweakHbondSubtree 0 2 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 6 4 / 24 = 0.16667 0.00344 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 7 7 / 23 = 0.30435 0.00162 ## OneRotamer 0 52 35 / 141 = 0.24823 0.03447 ## ClashingRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 62 = 0.01613 0.00096 ## ReduceBreak 0 2 2 / 157 = 0.01274 0.02379 ## CloseGap 1 148 32 / 255 = 0.12549 0.06959 ## HealGap 0 35 4 / 126 = 0.03175 0.00016 ## MoveGap 1 4 5 / 204 = 0.02451 0.02809 ## ReduceConstraint 1 0 0 / 136 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 548 = 0.00182 0.00756 ## InsertFragment 0 4 2 / 140 = 0.01429 0.00056 ## TwoFragment 0 0 0 / 133 = 0.00000 0.00000 ## CrossOver 3 16 8 / 129 = 0.06202 0.02428 ## CrossAndInsert 3 5 2 / 158 = 0.01266 0.01549 ## ReduceClash 0 3 3 / 300 = 0.01000 0.08910 # Closing gap before 69 without wiggling. # generation 30: best score out of 20: T0287.try7-al8 227.10474 cost/residue, 241 clashes 0.10415 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 11 / 45 = 0.24444 0.00963 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 27 21 / 47 = 0.44681 0.00940 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 11 5 / 31 = 0.16129 0.00401 ## TweakPsiPhiSegment 6 24 13 / 57 = 0.22807 0.01014 ## TweakHbondSubtree 0 3 1 / 9 = 0.11111 0.00440 ## TweakHbondSegment 0 6 4 / 25 = 0.16000 0.00330 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 7 7 / 25 = 0.28000 0.00149 ## OneRotamer 0 53 37 / 151 = 0.24503 0.03288 ## ClashingRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 2 5 1 / 65 = 0.01538 0.00092 ## ReduceBreak 0 2 2 / 165 = 0.01212 0.02263 ## CloseGap 1 156 33 / 268 = 0.12313 0.06625 ## HealGap 0 35 4 / 128 = 0.03125 0.00016 ## MoveGap 1 4 5 / 206 = 0.02427 0.02782 ## ReduceConstraint 1 0 0 / 141 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 561 = 0.00178 0.00739 ## InsertFragment 0 4 2 / 141 = 0.01418 0.00055 ## TwoFragment 0 0 0 / 138 = 0.00000 0.00000 ## CrossOver 3 16 8 / 133 = 0.06015 0.02355 ## CrossAndInsert 3 5 2 / 161 = 0.01242 0.01520 ## ReduceClash 0 3 3 / 310 = 0.00968 0.08623 # Healing gap before (T0287)Y174 residual break only 9.2832256e-02 # generation 31: best score out of 20: T0287.try7-al8 226.97960 cost/residue, 232 clashes 0.10906 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 13 / 54 = 0.24074 0.00897 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 9 = 0.11111 0.00373 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 30 24 / 55 = 0.43636 0.01372 ## TweakPsiSegment 0 4 4 / 18 = 0.22222 0.00223 ## TweakPsiPhiSubtree 0 11 5 / 32 = 0.15625 0.00388 ## TweakPsiPhiSegment 6 24 14 / 60 = 0.23333 0.00969 ## TweakHbondSubtree 0 4 2 / 12 = 0.16667 0.00531 ## TweakHbondSegment 0 7 6 / 30 = 0.20000 0.00633 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 8 7 / 26 = 0.26923 0.00143 ## OneRotamer 0 54 38 / 159 = 0.23899 0.03214 ## ClashingRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 2 6 2 / 67 = 0.02985 0.00142 ## ReduceBreak 0 2 2 / 166 = 0.01205 0.02250 ## CloseGap 1 158 35 / 278 = 0.12590 0.06387 ## HealGap 0 36 5 / 131 = 0.03817 0.00050 ## MoveGap 1 4 5 / 211 = 0.02370 0.02716 ## ReduceConstraint 1 0 0 / 145 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 574 = 0.00174 0.00722 ## InsertFragment 0 4 2 / 144 = 0.01389 0.00054 ## TwoFragment 0 0 0 / 141 = 0.00000 0.00000 ## CrossOver 3 16 8 / 137 = 0.05839 0.02286 ## CrossAndInsert 3 6 3 / 162 = 0.01852 0.01527 ## ReduceClash 0 3 3 / 316 = 0.00949 0.08459 # generation 32: best score out of 20: T0287.try7-al8 226.81938 cost/residue, 231 clashes 0.10459 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 13 / 59 = 0.22034 0.00821 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 2 / 15 = 0.13333 0.00657 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 34 29 / 60 = 0.48333 0.01586 ## TweakPsiSegment 0 4 4 / 20 = 0.20000 0.00200 ## TweakPsiPhiSubtree 0 12 7 / 34 = 0.20588 0.00582 ## TweakPsiPhiSegment 6 24 14 / 64 = 0.21875 0.00908 ## TweakHbondSubtree 0 5 3 / 15 = 0.20000 0.00606 ## TweakHbondSegment 0 7 6 / 33 = 0.18182 0.00575 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 8 7 / 26 = 0.26923 0.00143 ## OneRotamer 0 55 39 / 169 = 0.23077 0.03036 ## ClashingRotamer 0 2 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 2 7 2 / 69 = 0.02899 0.00138 ## ReduceBreak 0 2 2 / 169 = 0.01183 0.02210 ## CloseGap 1 161 36 / 281 = 0.12811 0.06319 ## HealGap 0 36 5 / 138 = 0.03623 0.00048 ## MoveGap 1 4 5 / 215 = 0.02326 0.02665 ## ReduceConstraint 1 0 0 / 146 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 590 = 0.00169 0.00702 ## InsertFragment 0 4 2 / 148 = 0.01351 0.00053 ## TwoFragment 0 0 0 / 142 = 0.00000 0.00000 ## CrossOver 4 16 8 / 138 = 0.05797 0.02270 ## CrossAndInsert 3 6 3 / 165 = 0.01818 0.01499 ## ReduceClash 0 3 3 / 325 = 0.00923 0.08225 # Closing gap before 69 without wiggling. # generation 33: best score out of 20: T0287.try7-al8 226.81917 cost/residue, 231 clashes 0.10459 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 13 / 60 = 0.21667 0.00807 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 2 / 19 = 0.10526 0.00519 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 36 29 / 65 = 0.44615 0.01464 ## TweakPsiSegment 0 4 4 / 21 = 0.19048 0.00191 ## TweakPsiPhiSubtree 0 16 8 / 38 = 0.21053 0.00523 ## TweakPsiPhiSegment 6 24 14 / 69 = 0.20290 0.00843 ## TweakHbondSubtree 0 6 4 / 18 = 0.22222 0.01332 ## TweakHbondSegment 0 7 6 / 36 = 0.16667 0.00527 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 8 / 27 = 0.29630 0.00162 ## OneRotamer 0 56 40 / 177 = 0.22599 0.02925 ## ClashingRotamer 0 2 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 2 7 2 / 72 = 0.02778 0.00132 ## ReduceBreak 0 2 2 / 172 = 0.01163 0.02171 ## CloseGap 1 165 37 / 290 = 0.12759 0.06123 ## HealGap 0 36 5 / 139 = 0.03597 0.00047 ## MoveGap 1 4 5 / 221 = 0.02262 0.02593 ## ReduceConstraint 1 0 0 / 149 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 600 = 0.00167 0.00691 ## InsertFragment 0 4 2 / 155 = 0.01290 0.00050 ## TwoFragment 0 0 0 / 147 = 0.00000 0.00000 ## CrossOver 4 17 9 / 144 = 0.06250 0.02175 ## CrossAndInsert 3 6 3 / 167 = 0.01796 0.01481 ## ReduceClash 0 3 3 / 331 = 0.00906 0.08076 # generation 34: best score out of 20: T0287.try7-al8 226.69356 cost/residue, 230 clashes 0.10682 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 14 / 63 = 0.22222 0.00772 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 13 7 / 27 = 0.25926 0.01510 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 37 30 / 71 = 0.42254 0.01376 ## TweakPsiSegment 0 4 4 / 21 = 0.19048 0.00191 ## TweakPsiPhiSubtree 0 16 9 / 41 = 0.21951 0.00661 ## TweakPsiPhiSegment 6 25 15 / 73 = 0.20548 0.00833 ## TweakHbondSubtree 1 8 6 / 27 = 0.22222 0.00903 ## TweakHbondSegment 0 7 6 / 37 = 0.16216 0.00513 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 9 / 28 = 0.32143 0.00160 ## OneRotamer 0 57 40 / 187 = 0.21390 0.02768 ## ClashingRotamer 0 2 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 77 = 0.02597 0.00124 ## ReduceBreak 0 2 2 / 175 = 0.01143 0.02134 ## CloseGap 1 168 37 / 293 = 0.12628 0.06060 ## HealGap 0 36 5 / 143 = 0.03497 0.00046 ## MoveGap 1 4 5 / 223 = 0.02242 0.02569 ## ReduceConstraint 1 0 0 / 153 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 614 = 0.00163 0.00675 ## InsertFragment 0 4 2 / 156 = 0.01282 0.00050 ## TwoFragment 0 0 0 / 148 = 0.00000 0.00000 ## CrossOver 4 17 9 / 147 = 0.06122 0.02131 ## CrossAndInsert 3 6 3 / 173 = 0.01734 0.01430 ## ReduceClash 0 3 3 / 335 = 0.00896 0.07980 # generation 35: best score out of 20: T0287.try7-al8 226.66100 cost/residue, 232 clashes 0.10651 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 14 / 65 = 0.21538 0.00748 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 1 19 10 / 40 = 0.25000 0.01455 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 39 32 / 76 = 0.42105 0.01294 ## TweakPsiSegment 0 4 4 / 21 = 0.19048 0.00191 ## TweakPsiPhiSubtree 0 16 9 / 43 = 0.20930 0.00630 ## TweakPsiPhiSegment 7 26 15 / 77 = 0.19481 0.00789 ## TweakHbondSubtree 1 9 7 / 31 = 0.22581 0.00848 ## TweakHbondSegment 0 7 6 / 39 = 0.15385 0.00487 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 9 / 29 = 0.31034 0.00155 ## OneRotamer 0 60 43 / 198 = 0.21717 0.02692 ## ClashingRotamer 0 2 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 78 = 0.02564 0.00122 ## ReduceBreak 0 2 2 / 178 = 0.01124 0.02098 ## CloseGap 1 171 38 / 303 = 0.12541 0.05860 ## HealGap 0 36 5 / 146 = 0.03425 0.00045 ## MoveGap 1 4 5 / 228 = 0.02193 0.02513 ## ReduceConstraint 1 0 0 / 155 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 628 = 0.00159 0.00660 ## InsertFragment 0 4 2 / 157 = 0.01274 0.00050 ## TwoFragment 0 0 0 / 154 = 0.00000 0.00000 ## CrossOver 4 17 9 / 148 = 0.06081 0.02116 ## CrossAndInsert 3 6 3 / 177 = 0.01695 0.01398 ## ReduceClash 0 3 3 / 338 = 0.00888 0.07909 # Closing gap before 69 without wiggling. # generation 36: best score out of 20: T0287.try7-al8 226.47504 cost/residue, 227 clashes 0.11103 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 14 / 66 = 0.21212 0.00737 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 1 22 11 / 44 = 0.25000 0.01468 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 42 35 / 81 = 0.43210 0.01584 ## TweakPsiSegment 0 4 4 / 21 = 0.19048 0.00191 ## TweakPsiPhiSubtree 0 16 9 / 48 = 0.18750 0.00564 ## TweakPsiPhiSegment 7 28 17 / 81 = 0.20988 0.00791 ## TweakHbondSubtree 1 10 8 / 35 = 0.22857 0.00804 ## TweakHbondSegment 0 8 7 / 40 = 0.17500 0.00637 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 9 / 29 = 0.31034 0.00155 ## OneRotamer 0 60 43 / 203 = 0.21182 0.02626 ## ClashingRotamer 0 2 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 80 = 0.02500 0.00119 ## ReduceBreak 0 2 2 / 181 = 0.01105 0.02063 ## CloseGap 1 177 40 / 312 = 0.12821 0.05691 ## HealGap 0 36 5 / 154 = 0.03247 0.00043 ## MoveGap 1 4 5 / 234 = 0.02137 0.02449 ## ReduceConstraint 1 0 0 / 158 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 643 = 0.00156 0.00644 ## InsertFragment 0 4 2 / 161 = 0.01242 0.00048 ## TwoFragment 0 0 0 / 156 = 0.00000 0.00000 ## CrossOver 4 17 9 / 152 = 0.05921 0.02061 ## CrossAndInsert 3 6 3 / 182 = 0.01648 0.01359 ## ReduceClash 0 3 3 / 346 = 0.00867 0.07726 # generation 37: best score out of 20: T0287.try7-al8 225.95015 cost/residue, 224 clashes 0.11004 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 15 / 70 = 0.21429 0.01077 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 24 11 / 51 = 0.21569 0.01266 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 46 38 / 89 = 0.42697 0.01453 ## TweakPsiSegment 0 4 4 / 21 = 0.19048 0.00191 ## TweakPsiPhiSubtree 0 16 9 / 48 = 0.18750 0.00564 ## TweakPsiPhiSegment 7 29 18 / 83 = 0.21687 0.00871 ## TweakHbondSubtree 1 11 9 / 38 = 0.23684 0.00835 ## TweakHbondSegment 0 9 8 / 42 = 0.19048 0.01580 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 9 / 30 = 0.30000 0.00149 ## OneRotamer 0 65 47 / 220 = 0.21364 0.02870 ## ClashingRotamer 0 2 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 81 = 0.02469 0.00118 ## ReduceBreak 0 2 2 / 183 = 0.01093 0.02041 ## CloseGap 1 178 41 / 316 = 0.12975 0.05619 ## HealGap 0 36 5 / 159 = 0.03145 0.00042 ## MoveGap 1 4 5 / 236 = 0.02119 0.02428 ## ReduceConstraint 1 0 0 / 163 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 656 = 0.00152 0.00632 ## InsertFragment 0 4 2 / 164 = 0.01220 0.00047 ## TwoFragment 0 0 0 / 160 = 0.00000 0.00000 ## CrossOver 4 17 9 / 154 = 0.05844 0.02034 ## CrossAndInsert 3 6 3 / 187 = 0.01604 0.01323 ## ReduceClash 0 3 3 / 355 = 0.00845 0.07530 # Closing gap before 69 without wiggling. # generation 38: best score out of 20: T0287.try7-al8 225.83601 cost/residue, 225 clashes 0.11154 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 15 / 70 = 0.21429 0.01077 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 26 12 / 57 = 0.21053 0.01137 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 49 39 / 96 = 0.40625 0.01466 ## TweakPsiSegment 0 4 4 / 21 = 0.19048 0.00191 ## TweakPsiPhiSubtree 1 17 10 / 49 = 0.20408 0.00607 ## TweakPsiPhiSegment 7 31 18 / 86 = 0.20930 0.00841 ## TweakHbondSubtree 1 13 11 / 42 = 0.26190 0.00881 ## TweakHbondSegment 0 9 8 / 47 = 0.17021 0.01412 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 11 / 34 = 0.32353 0.00141 ## OneRotamer 0 69 48 / 230 = 0.20870 0.02785 ## ClashingRotamer 0 2 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 82 = 0.02439 0.00116 ## ReduceBreak 0 2 2 / 187 = 0.01070 0.01997 ## CloseGap 1 181 42 / 323 = 0.13003 0.05500 ## HealGap 0 36 5 / 162 = 0.03086 0.00041 ## MoveGap 1 4 5 / 241 = 0.02075 0.02378 ## ReduceConstraint 1 0 0 / 165 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 665 = 0.00150 0.00623 ## InsertFragment 0 4 2 / 168 = 0.01190 0.00046 ## TwoFragment 0 0 0 / 163 = 0.00000 0.00000 ## CrossOver 4 17 9 / 163 = 0.05521 0.01922 ## CrossAndInsert 3 6 3 / 191 = 0.01571 0.01295 ## ReduceClash 0 3 3 / 362 = 0.00829 0.07384 # Closing gap before 69 without wiggling. # generation 39: best score out of 20: T0287.try7-al8 225.82359 cost/residue, 225 clashes 0.11154 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 16 / 76 = 0.21053 0.01008 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 27 13 / 62 = 0.20968 0.01046 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 52 40 / 100 = 0.40000 0.01407 ## TweakPsiSegment 0 4 4 / 21 = 0.19048 0.00191 ## TweakPsiPhiSubtree 2 17 10 / 49 = 0.20408 0.00607 ## TweakPsiPhiSegment 7 33 18 / 93 = 0.19355 0.00777 ## TweakHbondSubtree 2 14 12 / 43 = 0.27907 0.00922 ## TweakHbondSegment 0 14 12 / 56 = 0.21429 0.01558 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 12 / 36 = 0.33333 0.00135 ## OneRotamer 0 71 50 / 238 = 0.21008 0.02708 ## ClashingRotamer 0 2 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 83 = 0.02410 0.00115 ## ReduceBreak 0 2 2 / 189 = 0.01058 0.01976 ## CloseGap 1 181 42 / 328 = 0.12805 0.05416 ## HealGap 0 36 5 / 165 = 0.03030 0.00040 ## MoveGap 1 4 5 / 246 = 0.02033 0.02329 ## ReduceConstraint 1 0 0 / 166 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 680 = 0.00147 0.00609 ## InsertFragment 0 4 2 / 171 = 0.01170 0.00046 ## TwoFragment 0 0 0 / 170 = 0.00000 0.00000 ## CrossOver 4 17 9 / 164 = 0.05488 0.01910 ## CrossAndInsert 3 6 3 / 198 = 0.01515 0.01249 ## ReduceClash 0 3 3 / 368 = 0.00815 0.07264 # generation 40: best score out of 20: T0287.try7-al8 225.62381 cost/residue, 219 clashes 0.10831 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 31 17 / 78 = 0.21795 0.00998 ## JiggleSubtree 0 0 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 27 13 / 64 = 0.20312 0.01013 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 53 40 / 104 = 0.38462 0.01353 ## TweakPsiSegment 0 6 6 / 23 = 0.26087 0.00344 ## TweakPsiPhiSubtree 2 17 10 / 52 = 0.19231 0.00572 ## TweakPsiPhiSegment 7 33 19 / 94 = 0.20213 0.00781 ## TweakHbondSubtree 2 16 14 / 49 = 0.28571 0.01311 ## TweakHbondSegment 0 17 14 / 68 = 0.20588 0.01740 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 12 / 38 = 0.31579 0.00128 ## OneRotamer 0 71 50 / 245 = 0.20408 0.02631 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 84 = 0.02381 0.00113 ## ReduceBreak 0 2 2 / 192 = 0.01042 0.01945 ## CloseGap 1 184 42 / 331 = 0.12689 0.05367 ## HealGap 0 36 5 / 169 = 0.02959 0.00039 ## MoveGap 1 4 5 / 249 = 0.02008 0.02301 ## ReduceConstraint 1 0 0 / 170 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 691 = 0.00145 0.00600 ## InsertFragment 0 4 2 / 173 = 0.01156 0.00045 ## TwoFragment 0 0 0 / 176 = 0.00000 0.00000 ## CrossOver 4 17 9 / 166 = 0.05422 0.01887 ## CrossAndInsert 3 6 3 / 205 = 0.01463 0.01207 ## ReduceClash 0 3 3 / 374 = 0.00802 0.07147 # generation 41: best score out of 20: T0287.try7-al8 225.54716 cost/residue, 222 clashes 0.10831 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 33 18 / 83 = 0.21687 0.00953 ## JiggleSubtree 0 0 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 30 15 / 72 = 0.20833 0.00997 ## TweakPhiSegment 0 2 1 / 5 = 0.20000 0.00002 ## TweakPsiSubtree 0 56 40 / 111 = 0.36036 0.01268 ## TweakPsiSegment 0 6 7 / 24 = 0.29167 0.00330 ## TweakPsiPhiSubtree 2 17 10 / 52 = 0.19231 0.00572 ## TweakPsiPhiSegment 7 35 20 / 97 = 0.20619 0.00790 ## TweakHbondSubtree 2 18 18 / 61 = 0.29508 0.01365 ## TweakHbondSegment 0 19 15 / 73 = 0.20548 0.01693 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 12 / 39 = 0.30769 0.00124 ## OneRotamer 0 74 52 / 253 = 0.20553 0.02628 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 88 = 0.02273 0.00108 ## ReduceBreak 0 2 2 / 195 = 0.01026 0.01915 ## CloseGap 1 184 42 / 334 = 0.12575 0.05319 ## HealGap 0 36 5 / 174 = 0.02874 0.00038 ## MoveGap 1 4 5 / 251 = 0.01992 0.02283 ## ReduceConstraint 1 0 0 / 172 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 707 = 0.00141 0.00586 ## InsertFragment 0 4 2 / 176 = 0.01136 0.00044 ## TwoFragment 0 0 0 / 178 = 0.00000 0.00000 ## CrossOver 4 17 9 / 167 = 0.05389 0.01876 ## CrossAndInsert 3 6 3 / 208 = 0.01442 0.01189 ## ReduceClash 0 3 3 / 376 = 0.00798 0.07109 # Closing gap before 69 without wiggling. # generation 42: best score out of 20: T0287.try7-al8 225.54495 cost/residue, 222 clashes 0.10831 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 19 / 93 = 0.20430 0.00877 ## JiggleSubtree 0 0 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 31 15 / 76 = 0.19737 0.00944 ## TweakPhiSegment 0 3 1 / 7 = 0.14286 0.00001 ## TweakPsiSubtree 0 58 42 / 118 = 0.35593 0.01197 ## TweakPsiSegment 0 7 7 / 26 = 0.26923 0.00305 ## TweakPsiPhiSubtree 2 18 10 / 56 = 0.17857 0.00531 ## TweakPsiPhiSegment 7 36 20 / 98 = 0.20408 0.00782 ## TweakHbondSubtree 2 20 20 / 64 = 0.31250 0.01326 ## TweakHbondSegment 0 19 15 / 81 = 0.18519 0.01525 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 12 / 40 = 0.30000 0.00121 ## OneRotamer 0 76 52 / 266 = 0.19549 0.02500 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 88 = 0.02273 0.00108 ## ReduceBreak 0 2 2 / 199 = 0.01005 0.01877 ## CloseGap 1 185 42 / 340 = 0.12353 0.05225 ## HealGap 0 36 5 / 177 = 0.02825 0.00037 ## MoveGap 1 4 5 / 255 = 0.01961 0.02247 ## ReduceConstraint 1 0 0 / 173 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 714 = 0.00140 0.00580 ## InsertFragment 0 4 2 / 179 = 0.01117 0.00044 ## TwoFragment 0 0 0 / 183 = 0.00000 0.00000 ## CrossOver 4 17 9 / 167 = 0.05389 0.01876 ## CrossAndInsert 3 6 3 / 210 = 0.01429 0.01178 ## ReduceClash 0 3 3 / 383 = 0.00783 0.06980 # generation 43: best score out of 20: T0287.try7-al8 225.27412 cost/residue, 219 clashes 0.10831 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 22 / 99 = 0.22222 0.01300 ## JiggleSubtree 0 0 0 / 13 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 32 15 / 78 = 0.19231 0.00920 ## TweakPhiSegment 0 3 1 / 7 = 0.14286 0.00001 ## TweakPsiSubtree 0 59 42 / 123 = 0.34146 0.01149 ## TweakPsiSegment 0 7 8 / 30 = 0.26667 0.00268 ## TweakPsiPhiSubtree 2 18 10 / 58 = 0.17241 0.00513 ## TweakPsiPhiSegment 7 36 20 / 99 = 0.20202 0.00774 ## TweakHbondSubtree 2 20 20 / 68 = 0.29412 0.01248 ## TweakHbondSegment 0 22 17 / 98 = 0.17347 0.01335 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 12 / 40 = 0.30000 0.00121 ## OneRotamer 0 79 54 / 279 = 0.19355 0.02402 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 89 = 0.02247 0.00107 ## ReduceBreak 0 2 2 / 201 = 0.00995 0.01858 ## CloseGap 1 188 42 / 343 = 0.12245 0.05179 ## HealGap 0 36 5 / 178 = 0.02809 0.00037 ## MoveGap 1 4 5 / 260 = 0.01923 0.02204 ## ReduceConstraint 1 0 0 / 176 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 724 = 0.00138 0.00572 ## InsertFragment 0 4 2 / 182 = 0.01099 0.00043 ## TwoFragment 0 0 0 / 184 = 0.00000 0.00000 ## CrossOver 4 17 9 / 171 = 0.05263 0.01832 ## CrossAndInsert 3 6 3 / 212 = 0.01415 0.01167 ## ReduceClash 0 3 3 / 390 = 0.00769 0.06854 # Closing gap before 172 without wiggling. # generation 44: best score out of 20: T0287.try7-al8 225.25856 cost/residue, 219 clashes 0.10831 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 24 / 107 = 0.22430 0.01228 ## JiggleSubtree 0 0 0 / 13 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 35 15 / 84 = 0.17857 0.00854 ## TweakPhiSegment 0 3 1 / 7 = 0.14286 0.00001 ## TweakPsiSubtree 0 61 43 / 127 = 0.33858 0.01125 ## TweakPsiSegment 0 8 9 / 35 = 0.25714 0.00231 ## TweakPsiPhiSubtree 2 18 10 / 60 = 0.16667 0.00496 ## TweakPsiPhiSegment 7 36 20 / 102 = 0.19608 0.00751 ## TweakHbondSubtree 2 21 21 / 73 = 0.28767 0.01222 ## TweakHbondSegment 0 24 18 / 103 = 0.17476 0.01282 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 13 / 42 = 0.30952 0.00127 ## OneRotamer 0 80 55 / 288 = 0.19097 0.02329 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 89 = 0.02247 0.00107 ## ReduceBreak 0 2 2 / 203 = 0.00985 0.01840 ## CloseGap 1 191 42 / 348 = 0.12069 0.05105 ## HealGap 0 38 5 / 185 = 0.02703 0.00036 ## MoveGap 1 4 5 / 266 = 0.01880 0.02154 ## ReduceConstraint 1 0 0 / 179 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 732 = 0.00137 0.00566 ## InsertFragment 0 4 2 / 184 = 0.01087 0.00042 ## TwoFragment 0 0 0 / 188 = 0.00000 0.00000 ## CrossOver 4 17 9 / 178 = 0.05056 0.01760 ## CrossAndInsert 3 6 3 / 214 = 0.01402 0.01156 ## ReduceClash 0 3 3 / 393 = 0.00763 0.06802 # Closing gap before 61 without wiggling. # generation 45: best score out of 20: T0287.try7-al8 224.54865 cost/residue, 224 clashes 0.10831 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 25 / 116 = 0.21552 0.01149 ## JiggleSubtree 0 0 0 / 13 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 36 15 / 89 = 0.16854 0.00806 ## TweakPhiSegment 0 3 1 / 7 = 0.14286 0.00001 ## TweakPsiSubtree 0 64 44 / 131 = 0.33588 0.01091 ## TweakPsiSegment 0 9 10 / 36 = 0.27778 0.00497 ## TweakPsiPhiSubtree 2 18 10 / 62 = 0.16129 0.00480 ## TweakPsiPhiSegment 7 37 22 / 107 = 0.20561 0.00769 ## TweakHbondSubtree 2 23 23 / 81 = 0.28395 0.01186 ## TweakHbondSegment 0 25 19 / 108 = 0.17593 0.01334 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 14 / 44 = 0.31818 0.00122 ## OneRotamer 0 82 57 / 297 = 0.19192 0.02303 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 93 = 0.02151 0.00102 ## ReduceBreak 0 2 2 / 206 = 0.00971 0.01813 ## CloseGap 1 193 43 / 353 = 0.12181 0.05032 ## HealGap 0 38 5 / 187 = 0.02674 0.00035 ## MoveGap 1 4 5 / 271 = 0.01845 0.02114 ## ReduceConstraint 1 0 0 / 180 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 747 = 0.00268 0.00664 ## InsertFragment 0 4 2 / 184 = 0.01087 0.00042 ## TwoFragment 0 0 0 / 189 = 0.00000 0.00000 ## CrossOver 4 18 10 / 182 = 0.05495 0.02017 ## CrossAndInsert 4 6 3 / 216 = 0.01389 0.01145 ## ReduceClash 0 3 3 / 399 = 0.00752 0.06700 # generation 46: best score out of 20: T0287.try7-al8 224.54790 cost/residue, 224 clashes 0.10831 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 45 26 / 124 = 0.20968 0.01102 ## JiggleSubtree 0 0 0 / 13 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 39 15 / 94 = 0.15957 0.00763 ## TweakPhiSegment 0 3 1 / 8 = 0.12500 0.00001 ## TweakPsiSubtree 0 65 44 / 134 = 0.32836 0.01067 ## TweakPsiSegment 0 11 11 / 40 = 0.27500 0.00449 ## TweakPsiPhiSubtree 2 18 10 / 62 = 0.16129 0.00480 ## TweakPsiPhiSegment 8 38 22 / 111 = 0.19820 0.00742 ## TweakHbondSubtree 2 24 24 / 86 = 0.27907 0.01307 ## TweakHbondSegment 1 25 19 / 114 = 0.16667 0.01264 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 13 15 / 45 = 0.33333 0.00143 ## OneRotamer 0 83 57 / 305 = 0.18689 0.02243 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 95 = 0.02105 0.00100 ## ReduceBreak 0 2 2 / 206 = 0.00971 0.01813 ## CloseGap 1 196 44 / 358 = 0.12291 0.04962 ## HealGap 0 38 5 / 189 = 0.02646 0.00035 ## MoveGap 1 4 5 / 274 = 0.01825 0.02091 ## ReduceConstraint 1 0 0 / 184 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 758 = 0.00264 0.00654 ## InsertFragment 0 4 2 / 187 = 0.01070 0.00042 ## TwoFragment 0 0 0 / 194 = 0.00000 0.00000 ## CrossOver 4 18 10 / 191 = 0.05236 0.01922 ## CrossAndInsert 4 6 3 / 222 = 0.01351 0.01114 ## ReduceClash 0 3 3 / 402 = 0.00746 0.06650 # generation 47: best score out of 20: T0287.try7-al8 224.19881 cost/residue, 217 clashes 0.10679 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 45 27 / 129 = 0.20930 0.01063 ## JiggleSubtree 0 0 0 / 13 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 39 15 / 94 = 0.15957 0.00763 ## TweakPhiSegment 0 4 1 / 10 = 0.10000 0.00001 ## TweakPsiSubtree 0 66 45 / 138 = 0.32609 0.01040 ## TweakPsiSegment 0 12 12 / 44 = 0.27273 0.00415 ## TweakPsiPhiSubtree 2 19 10 / 63 = 0.15873 0.00472 ## TweakPsiPhiSegment 8 39 22 / 113 = 0.19469 0.00729 ## TweakHbondSubtree 2 27 27 / 95 = 0.28421 0.01367 ## TweakHbondSegment 2 28 20 / 120 = 0.16667 0.01209 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 14 16 / 46 = 0.34783 0.00140 ## OneRotamer 0 85 59 / 310 = 0.19032 0.02257 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 95 = 0.02105 0.00100 ## ReduceBreak 0 2 2 / 207 = 0.00966 0.01804 ## CloseGap 1 197 45 / 363 = 0.12397 0.04894 ## HealGap 0 38 5 / 192 = 0.02604 0.00034 ## MoveGap 1 4 5 / 276 = 0.01812 0.02076 ## ReduceConstraint 1 0 0 / 187 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 773 = 0.00259 0.00641 ## InsertFragment 0 4 2 / 191 = 0.01047 0.00041 ## TwoFragment 0 0 0 / 198 = 0.00000 0.00000 ## CrossOver 4 19 11 / 200 = 0.05500 0.02011 ## CrossAndInsert 4 6 3 / 228 = 0.01316 0.01085 ## ReduceClash 0 3 3 / 407 = 0.00737 0.06568 # Closing gap before 141 # generation 48: best score out of 20: T0287.try7-al8 224.19875 cost/residue, 217 clashes 0.10679 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 46 28 / 136 = 0.20588 0.01066 ## JiggleSubtree 0 0 0 / 14 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 51 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 41 16 / 98 = 0.16327 0.00732 ## TweakPhiSegment 0 4 1 / 10 = 0.10000 0.00001 ## TweakPsiSubtree 0 67 47 / 142 = 0.33099 0.01011 ## TweakPsiSegment 0 12 13 / 45 = 0.28889 0.00407 ## TweakPsiPhiSubtree 2 19 10 / 64 = 0.15625 0.00465 ## TweakPsiPhiSegment 8 39 23 / 116 = 0.19828 0.00719 ## TweakHbondSubtree 2 32 27 / 108 = 0.25000 0.01202 ## TweakHbondSegment 4 29 20 / 122 = 0.16393 0.01189 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 15 16 / 49 = 0.32653 0.00131 ## OneRotamer 0 86 61 / 316 = 0.19304 0.02232 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 96 = 0.02083 0.00099 ## ReduceBreak 0 2 2 / 208 = 0.00962 0.01795 ## CloseGap 1 199 45 / 368 = 0.12228 0.04827 ## HealGap 0 40 5 / 196 = 0.02551 0.00034 ## MoveGap 1 4 5 / 281 = 0.01779 0.02039 ## ReduceConstraint 1 0 0 / 192 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 783 = 0.00255 0.00633 ## InsertFragment 0 4 2 / 194 = 0.01031 0.00040 ## TwoFragment 0 0 0 / 201 = 0.00000 0.00000 ## CrossOver 4 20 12 / 209 = 0.05742 0.01924 ## CrossAndInsert 4 6 3 / 230 = 0.01304 0.01076 ## ReduceClash 0 3 3 / 412 = 0.00728 0.06488 # generation 49: best score out of 20: T0287.try7-al8 223.94824 cost/residue, 214 clashes 0.10723 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 48 30 / 143 = 0.20979 0.01028 ## JiggleSubtree 0 0 0 / 14 = 0.00000 0.00000 ## JiggleSegment 0 2 1 / 14 = 0.07143 0.01789 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 51 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 43 16 / 100 = 0.16000 0.00718 ## TweakPhiSegment 0 4 1 / 10 = 0.10000 0.00001 ## TweakPsiSubtree 0 68 48 / 145 = 0.33103 0.01014 ## TweakPsiSegment 0 15 15 / 53 = 0.28302 0.00353 ## TweakPsiPhiSubtree 2 19 10 / 66 = 0.15152 0.00451 ## TweakPsiPhiSegment 8 39 24 / 117 = 0.20513 0.00737 ## TweakHbondSubtree 2 33 28 / 118 = 0.23729 0.01176 ## TweakHbondSegment 4 32 21 / 130 = 0.16154 0.01116 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 16 17 / 51 = 0.33333 0.00137 ## OneRotamer 0 87 63 / 323 = 0.19505 0.02211 ## ClashingRotamer 0 2 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 99 = 0.02020 0.00096 ## ReduceBreak 0 2 2 / 210 = 0.00952 0.01778 ## CloseGap 1 200 46 / 370 = 0.12432 0.04803 ## HealGap 0 40 5 / 197 = 0.02538 0.00034 ## MoveGap 1 4 5 / 285 = 0.01754 0.02010 ## ReduceConstraint 1 0 0 / 193 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 795 = 0.00252 0.00624 ## InsertFragment 0 4 2 / 196 = 0.01020 0.00040 ## TwoFragment 0 0 0 / 202 = 0.00000 0.00000 ## CrossOver 4 20 12 / 216 = 0.05556 0.01862 ## CrossAndInsert 4 6 3 / 233 = 0.01288 0.01062 ## ReduceClash 0 3 3 / 416 = 0.00721 0.06426 # Closing gap before 141 next to short segment # Closing gap before 41 next to short segment # Healing gap before (T0287)D62 residual break only 4.8482168e-02 # generation 50: best score out of 20: T0287.try7-al8 223.94273 cost/residue, 214 clashes 0.10698 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 50 31 / 147 = 0.21088 0.01004 ## JiggleSubtree 0 0 0 / 15 = 0.00000 0.00000 ## JiggleSegment 2 3 1 / 34 = 0.02941 0.00737 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 44 16 / 101 = 0.15842 0.00711 ## TweakPhiSegment 0 4 1 / 10 = 0.10000 0.00001 ## TweakPsiSubtree 0 71 51 / 149 = 0.34228 0.00994 ## TweakPsiSegment 0 16 16 / 55 = 0.29091 0.00343 ## TweakPsiPhiSubtree 2 19 10 / 67 = 0.14925 0.00444 ## TweakPsiPhiSegment 8 39 24 / 118 = 0.20339 0.00730 ## TweakHbondSubtree 3 33 28 / 120 = 0.23333 0.01156 ## TweakHbondSegment 5 32 21 / 134 = 0.15672 0.01083 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 16 17 / 52 = 0.32692 0.00135 ## OneRotamer 0 89 64 / 332 = 0.19277 0.02153 ## ClashingRotamer 0 2 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 99 = 0.02020 0.00096 ## ReduceBreak 0 2 2 / 211 = 0.00948 0.01770 ## CloseGap 1 203 47 / 376 = 0.12500 0.04728 ## HealGap 0 41 6 / 200 = 0.03000 0.00038 ## MoveGap 1 4 5 / 288 = 0.01736 0.01990 ## ReduceConstraint 1 0 0 / 199 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 804 = 0.00249 0.00617 ## InsertFragment 0 4 2 / 200 = 0.01000 0.00039 ## TwoFragment 0 0 0 / 204 = 0.00000 0.00000 ## CrossOver 4 21 13 / 223 = 0.05830 0.01846 ## CrossAndInsert 4 6 3 / 237 = 0.01266 0.01044 ## ReduceClash 0 3 3 / 418 = 0.00718 0.06395 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 51: best score out of 20: T0287.try7-al8 223.88596 cost/residue, 214 clashes 0.10723 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 52 32 / 151 = 0.21192 0.01018 ## JiggleSubtree 0 0 0 / 15 = 0.00000 0.00000 ## JiggleSegment 2 3 1 / 37 = 0.02703 0.00677 ## OptSubtree 0 0 0 / 37 = 0.00000 0.00000 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 45 16 / 103 = 0.15534 0.00697 ## TweakPhiSegment 0 4 1 / 10 = 0.10000 0.00001 ## TweakPsiSubtree 0 71 51 / 151 = 0.33775 0.00981 ## TweakPsiSegment 1 18 18 / 59 = 0.30508 0.00326 ## TweakPsiPhiSubtree 2 20 10 / 69 = 0.14493 0.00431 ## TweakPsiPhiSegment 8 40 24 / 120 = 0.20000 0.00718 ## TweakHbondSubtree 3 33 28 / 124 = 0.22581 0.01119 ## TweakHbondSegment 5 35 21 / 138 = 0.15217 0.01051 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 16 18 / 54 = 0.33333 0.00132 ## OneRotamer 0 92 67 / 345 = 0.19420 0.02178 ## ClashingRotamer 0 2 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 100 = 0.02000 0.00095 ## ReduceBreak 0 2 2 / 214 = 0.00935 0.01745 ## CloseGap 1 203 47 / 380 = 0.12368 0.04679 ## HealGap 0 44 6 / 205 = 0.02927 0.00037 ## MoveGap 1 4 5 / 290 = 0.01724 0.01976 ## ReduceConstraint 1 0 0 / 202 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 815 = 0.00245 0.00608 ## InsertFragment 0 4 2 / 204 = 0.00980 0.00038 ## TwoFragment 0 0 0 / 206 = 0.00000 0.00000 ## CrossOver 4 21 13 / 235 = 0.05532 0.01752 ## CrossAndInsert 4 6 3 / 240 = 0.01250 0.01031 ## ReduceClash 0 3 3 / 423 = 0.00709 0.06320 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 52: best score out of 20: T0287.try7-al8 223.69469 cost/residue, 214 clashes 0.10813 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 53 32 / 153 = 0.20915 0.01005 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 3 1 / 40 = 0.02500 0.00626 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 53 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 47 17 / 109 = 0.15596 0.00660 ## TweakPhiSegment 0 4 1 / 11 = 0.09091 0.00001 ## TweakPsiSubtree 0 75 54 / 156 = 0.34615 0.01015 ## TweakPsiSegment 1 18 18 / 61 = 0.29508 0.00315 ## TweakPsiPhiSubtree 2 20 10 / 71 = 0.14085 0.00419 ## TweakPsiPhiSegment 8 41 25 / 122 = 0.20492 0.00863 ## TweakHbondSubtree 4 36 30 / 136 = 0.22059 0.01101 ## TweakHbondSegment 5 36 21 / 144 = 0.14583 0.01008 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 16 18 / 55 = 0.32727 0.00129 ## OneRotamer 0 93 68 / 357 = 0.19048 0.02115 ## ClashingRotamer 0 2 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 100 = 0.02000 0.00095 ## ReduceBreak 0 2 2 / 217 = 0.00922 0.01721 ## CloseGap 1 203 47 / 384 = 0.12240 0.04630 ## HealGap 0 44 6 / 206 = 0.02913 0.00037 ## MoveGap 1 4 5 / 292 = 0.01712 0.01962 ## ReduceConstraint 1 0 0 / 202 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 827 = 0.00242 0.00600 ## InsertFragment 0 4 2 / 206 = 0.00971 0.00038 ## TwoFragment 0 0 0 / 208 = 0.00000 0.00000 ## CrossOver 4 21 13 / 245 = 0.05306 0.01681 ## CrossAndInsert 4 6 3 / 243 = 0.01235 0.01018 ## ReduceClash 0 3 3 / 424 = 0.00708 0.06305 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 53: best score out of 20: T0287.try7-al8 223.59622 cost/residue, 206 clashes 0.10723 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 54 34 / 158 = 0.21519 0.00991 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 4 2 / 45 = 0.04444 0.00708 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 53 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 48 17 / 110 = 0.15455 0.00654 ## TweakPhiSegment 0 4 1 / 11 = 0.09091 0.00001 ## TweakPsiSubtree 0 77 54 / 159 = 0.33962 0.00995 ## TweakPsiSegment 1 19 19 / 65 = 0.29231 0.00296 ## TweakPsiPhiSubtree 2 20 10 / 72 = 0.13889 0.00413 ## TweakPsiPhiSegment 9 44 26 / 127 = 0.20472 0.00856 ## TweakHbondSubtree 4 37 31 / 140 = 0.22143 0.01089 ## TweakHbondSegment 6 37 22 / 148 = 0.14865 0.00987 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 17 18 / 57 = 0.31579 0.00125 ## OneRotamer 0 94 69 / 364 = 0.18956 0.02171 ## ClashingRotamer 0 2 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 101 = 0.01980 0.00094 ## ReduceBreak 0 2 2 / 222 = 0.00901 0.01682 ## CloseGap 1 204 48 / 389 = 0.12339 0.04572 ## HealGap 0 45 6 / 211 = 0.02844 0.00036 ## MoveGap 1 4 5 / 296 = 0.01689 0.01936 ## ReduceConstraint 1 0 0 / 205 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 839 = 0.00238 0.00591 ## InsertFragment 0 4 2 / 207 = 0.00966 0.00038 ## TwoFragment 0 0 0 / 212 = 0.00000 0.00000 ## CrossOver 4 21 13 / 252 = 0.05159 0.01634 ## CrossAndInsert 4 6 3 / 248 = 0.01210 0.00998 ## ReduceClash 0 3 3 / 429 = 0.00699 0.06231 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 54: best score out of 20: T0287.try7-al8 223.57800 cost/residue, 206 clashes 0.10723 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 55 34 / 163 = 0.20859 0.00961 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 4 2 / 49 = 0.04082 0.00650 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 53 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 49 17 / 112 = 0.15179 0.00642 ## TweakPhiSegment 0 4 1 / 11 = 0.09091 0.00001 ## TweakPsiSubtree 0 79 55 / 164 = 0.33537 0.00981 ## TweakPsiSegment 1 22 21 / 70 = 0.30000 0.00454 ## TweakPsiPhiSubtree 2 21 10 / 74 = 0.13514 0.00402 ## TweakPsiPhiSegment 11 47 27 / 134 = 0.20149 0.00825 ## TweakHbondSubtree 4 38 32 / 145 = 0.22069 0.01122 ## TweakHbondSegment 6 39 23 / 154 = 0.14935 0.00987 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 17 18 / 57 = 0.31579 0.00125 ## OneRotamer 0 95 69 / 375 = 0.18400 0.02107 ## ClashingRotamer 0 2 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 101 = 0.01980 0.00094 ## ReduceBreak 0 2 2 / 224 = 0.00893 0.01667 ## CloseGap 1 204 48 / 391 = 0.12276 0.04549 ## HealGap 0 45 6 / 212 = 0.02830 0.00036 ## MoveGap 1 4 5 / 298 = 0.01678 0.01923 ## ReduceConstraint 1 0 0 / 209 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 854 = 0.00234 0.00581 ## InsertFragment 0 4 2 / 209 = 0.00957 0.00037 ## TwoFragment 0 0 0 / 218 = 0.00000 0.00000 ## CrossOver 4 21 13 / 260 = 0.05000 0.01584 ## CrossAndInsert 4 6 3 / 250 = 0.01200 0.00990 ## ReduceClash 0 3 3 / 432 = 0.00694 0.06188 # Closing gap before 41 next to short segment # Closing gap before 145 without wiggling. # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 55: best score out of 20: T0287.try7-al8 223.51073 cost/residue, 206 clashes 0.10695 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 55 34 / 168 = 0.20238 0.00932 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 4 2 / 55 = 0.03636 0.00579 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 53 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 50 18 / 114 = 0.15789 0.00631 ## TweakPhiSegment 0 5 1 / 12 = 0.08333 0.00001 ## TweakPsiSubtree 0 79 56 / 168 = 0.33333 0.00960 ## TweakPsiSegment 1 24 23 / 75 = 0.30667 0.00439 ## TweakPsiPhiSubtree 2 21 10 / 74 = 0.13514 0.00402 ## TweakPsiPhiSegment 11 49 28 / 140 = 0.20000 0.00834 ## TweakHbondSubtree 4 42 34 / 153 = 0.22222 0.01121 ## TweakHbondSegment 6 40 24 / 159 = 0.15094 0.00972 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 17 18 / 57 = 0.31579 0.00125 ## OneRotamer 0 96 70 / 385 = 0.18182 0.02054 ## ClashingRotamer 0 2 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 102 = 0.01961 0.00093 ## ReduceBreak 0 2 2 / 229 = 0.00873 0.01631 ## CloseGap 1 205 49 / 396 = 0.12374 0.04498 ## HealGap 0 45 6 / 213 = 0.02817 0.00035 ## MoveGap 1 4 5 / 299 = 0.01672 0.01916 ## ReduceConstraint 1 0 0 / 209 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 864 = 0.00231 0.00574 ## InsertFragment 0 4 2 / 211 = 0.00948 0.00037 ## TwoFragment 0 0 0 / 222 = 0.00000 0.00000 ## CrossOver 4 21 13 / 265 = 0.04906 0.01554 ## CrossAndInsert 4 6 3 / 256 = 0.01172 0.00966 ## ReduceClash 0 3 3 / 437 = 0.00686 0.06117 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 43 next to short segment # Closing gap before 41 next to short segment # generation 56: best score out of 20: T0287.try7-al8 223.45952 cost/residue, 207 clashes 0.10732 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 34 / 172 = 0.19767 0.00910 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 4 2 / 61 = 0.03279 0.00522 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 0 0 / 54 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 4 51 18 / 115 = 0.15652 0.00626 ## TweakPhiSegment 0 6 2 / 13 = 0.15385 0.00080 ## TweakPsiSubtree 0 81 56 / 174 = 0.32184 0.00927 ## TweakPsiSegment 1 25 23 / 76 = 0.30263 0.00434 ## TweakPsiPhiSubtree 2 21 10 / 75 = 0.13333 0.00397 ## TweakPsiPhiSegment 11 51 29 / 143 = 0.20280 0.00868 ## TweakHbondSubtree 4 44 36 / 159 = 0.22642 0.01124 ## TweakHbondSegment 6 40 24 / 161 = 0.14907 0.00960 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 17 18 / 58 = 0.31034 0.00123 ## OneRotamer 0 98 72 / 396 = 0.18182 0.02028 ## ClashingRotamer 0 2 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 103 = 0.01942 0.00092 ## ReduceBreak 0 2 2 / 233 = 0.00858 0.01603 ## CloseGap 1 205 49 / 402 = 0.12189 0.04431 ## HealGap 0 45 6 / 214 = 0.02804 0.00035 ## MoveGap 1 4 5 / 305 = 0.01639 0.01879 ## ReduceConstraint 1 0 0 / 211 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 876 = 0.00228 0.00566 ## InsertFragment 0 4 2 / 213 = 0.00939 0.00037 ## TwoFragment 0 0 0 / 227 = 0.00000 0.00000 ## CrossOver 4 21 13 / 273 = 0.04762 0.01508 ## CrossAndInsert 4 6 3 / 260 = 0.01154 0.00951 ## ReduceClash 0 3 3 / 439 = 0.00683 0.06089 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 57: best score out of 20: T0287.try7-al8 223.25159 cost/residue, 202 clashes 0.10828 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 35 / 178 = 0.19663 0.00885 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 4 2 / 64 = 0.03125 0.00498 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 0 0 / 55 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 4 51 18 / 117 = 0.15385 0.00615 ## TweakPhiSegment 0 8 2 / 18 = 0.11111 0.00057 ## TweakPsiSubtree 0 82 57 / 177 = 0.32203 0.00912 ## TweakPsiSegment 1 28 24 / 82 = 0.29268 0.00403 ## TweakPsiPhiSubtree 2 21 10 / 75 = 0.13333 0.00397 ## TweakPsiPhiSegment 12 51 29 / 149 = 0.19463 0.00833 ## TweakHbondSubtree 4 44 38 / 165 = 0.23030 0.01110 ## TweakHbondSegment 6 42 24 / 165 = 0.14545 0.00937 ## TweakMultimer 35 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 17 18 / 60 = 0.30000 0.00119 ## OneRotamer 0 103 77 / 408 = 0.18873 0.02096 ## ClashingRotamer 0 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 103 = 0.01942 0.00092 ## ReduceBreak 0 2 2 / 237 = 0.00844 0.01576 ## CloseGap 1 206 50 / 406 = 0.12315 0.04418 ## HealGap 0 45 6 / 216 = 0.02778 0.00035 ## MoveGap 1 4 5 / 312 = 0.01603 0.01837 ## ReduceConstraint 1 0 0 / 214 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 888 = 0.00225 0.00558 ## InsertFragment 0 4 2 / 215 = 0.00930 0.00036 ## TwoFragment 0 0 0 / 228 = 0.00000 0.00000 ## CrossOver 5 21 13 / 274 = 0.04745 0.01503 ## CrossAndInsert 4 6 3 / 261 = 0.01149 0.00948 ## ReduceClash 0 3 3 / 441 = 0.00680 0.06062 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 43 next to short segment # generation 58: best score out of 20: T0287.try7-al8 222.99701 cost/residue, 195 clashes 0.10828 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 35 / 181 = 0.19337 0.00871 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 4 2 / 67 = 0.02985 0.00475 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 0 0 / 56 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 4 51 18 / 118 = 0.15254 0.00610 ## TweakPhiSegment 0 9 3 / 21 = 0.14286 0.00352 ## TweakPsiSubtree 0 84 58 / 182 = 0.31868 0.00888 ## TweakPsiSegment 1 28 24 / 83 = 0.28916 0.00398 ## TweakPsiPhiSubtree 2 22 10 / 76 = 0.13158 0.00392 ## TweakPsiPhiSegment 13 52 29 / 153 = 0.18954 0.00811 ## TweakHbondSubtree 4 48 40 / 175 = 0.22857 0.01103 ## TweakHbondSegment 6 43 24 / 171 = 0.14035 0.00904 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 18 / 62 = 0.29032 0.00115 ## OneRotamer 0 106 80 / 422 = 0.18957 0.02100 ## ClashingRotamer 0 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 105 = 0.01905 0.00091 ## ReduceBreak 0 2 2 / 239 = 0.00837 0.01563 ## CloseGap 1 208 52 / 413 = 0.12591 0.04346 ## HealGap 0 45 6 / 217 = 0.02765 0.00035 ## MoveGap 1 4 5 / 314 = 0.01592 0.01825 ## ReduceConstraint 1 0 0 / 217 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 903 = 0.00221 0.00549 ## InsertFragment 0 4 2 / 218 = 0.00917 0.00036 ## TwoFragment 0 0 0 / 229 = 0.00000 0.00000 ## CrossOver 5 21 13 / 277 = 0.04693 0.01486 ## CrossAndInsert 4 6 3 / 265 = 0.01132 0.00934 ## ReduceClash 0 3 3 / 444 = 0.00676 0.06021 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 59: best score out of 20: T0287.try7-al8 222.94441 cost/residue, 196 clashes 0.10904 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 57 36 / 185 = 0.19459 0.00898 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 4 2 / 71 = 0.02817 0.00449 ## OptSubtree 0 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 0 0 / 56 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 4 52 18 / 119 = 0.15126 0.00605 ## TweakPhiSegment 0 12 4 / 28 = 0.14286 0.00478 ## TweakPsiSubtree 0 85 58 / 186 = 0.31183 0.00869 ## TweakPsiSegment 1 28 24 / 87 = 0.27586 0.00380 ## TweakPsiPhiSubtree 3 22 10 / 76 = 0.13158 0.00392 ## TweakPsiPhiSegment 13 55 32 / 163 = 0.19632 0.00785 ## TweakHbondSubtree 4 50 41 / 181 = 0.22652 0.01096 ## TweakHbondSegment 6 44 24 / 175 = 0.13714 0.00883 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 18 / 62 = 0.29032 0.00115 ## OneRotamer 0 109 81 / 433 = 0.18707 0.02057 ## ClashingRotamer 0 2 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 106 = 0.01887 0.00090 ## ReduceBreak 0 2 2 / 242 = 0.00826 0.01543 ## CloseGap 1 208 52 / 416 = 0.12500 0.04315 ## HealGap 0 46 7 / 220 = 0.03182 0.00035 ## MoveGap 1 4 5 / 317 = 0.01577 0.01808 ## ReduceConstraint 1 0 0 / 217 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 913 = 0.00219 0.00543 ## InsertFragment 0 4 2 / 219 = 0.00913 0.00036 ## TwoFragment 0 0 0 / 233 = 0.00000 0.00000 ## CrossOver 5 21 13 / 285 = 0.04561 0.01445 ## CrossAndInsert 4 6 3 / 268 = 0.01119 0.00923 ## ReduceClash 0 3 3 / 447 = 0.00671 0.05980 # Closing gap before 69 without wiggling. # Closing gap before 41 next to short segment # Closing gap before 141 next to short segment # Closing gap before 41 next to short segment # generation 60: best score out of 20: T0287.try7-al8 222.75647 cost/residue, 191 clashes 0.10881 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 59 37 / 194 = 0.19072 0.00860 ## JiggleSubtree 0 0 0 / 16 = 0.00000 0.00000 ## JiggleSegment 2 4 2 / 73 = 0.02740 0.00436 ## OptSubtree 0 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 0 0 / 56 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 4 52 18 / 120 = 0.15000 0.00600 ## TweakPhiSegment 0 15 4 / 34 = 0.11765 0.00394 ## TweakPsiSubtree 0 85 58 / 187 = 0.31016 0.00864 ## TweakPsiSegment 1 28 25 / 88 = 0.28409 0.00376 ## TweakPsiPhiSubtree 3 22 10 / 76 = 0.13158 0.00392 ## TweakPsiPhiSegment 13 57 34 / 170 = 0.20000 0.00761 ## TweakHbondSubtree 4 53 45 / 194 = 0.23196 0.01134 ## TweakHbondSegment 6 46 25 / 179 = 0.13966 0.00885 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 18 / 63 = 0.28571 0.00113 ## OneRotamer 0 111 83 / 446 = 0.18610 0.02094 ## ClashingRotamer 0 2 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 108 = 0.01852 0.00088 ## ReduceBreak 0 2 2 / 244 = 0.00820 0.01531 ## CloseGap 1 208 52 / 420 = 0.12381 0.04274 ## HealGap 0 46 8 / 222 = 0.03604 0.00038 ## MoveGap 1 4 5 / 319 = 0.01567 0.01796 ## ReduceConstraint 1 0 0 / 218 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 918 = 0.00218 0.00540 ## InsertFragment 0 4 2 / 220 = 0.00909 0.00035 ## TwoFragment 0 0 0 / 237 = 0.00000 0.00000 ## CrossOver 5 21 13 / 294 = 0.04422 0.01400 ## CrossAndInsert 4 6 3 / 272 = 0.01103 0.00910 ## ReduceClash 0 3 3 / 451 = 0.00665 0.05927 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_903261146.pdb -s /var/tmp/to_scwrl_903261146.seq -o /var/tmp/from_scwrl_903261146.pdb > /var/tmp/scwrl_903261146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_903261146.pdb # T0287.try7-al8-scwrl 226.89843 cost/residue 246 clashes 0.10882 breaks # iteration 1 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try7-al6 at pool[17] 238.80225 cost/residue, 227 clashes 0.26386 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # generation 1: best score out of 20: T0287.try7-al6 234.95213 cost/residue, 298 clashes 0.26386 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 1 / 4 = 0.25000 0.05135 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 5 = 0.00000 0.00000 ## CloseGap 0 0 0 / 1 = 0.00000 0.00000 ## HealGap 0 2 0 / 7 = 0.00000 0.00000 ## MoveGap 0 2 2 / 5 = 0.40000 0.76499 ## ReduceConstraint 0 0 0 / 8 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 2 = 0.50000 15.57451 ## InsertSpecificFragment 0 3 3 / 25 = 0.12000 0.33834 ## InsertFragment 0 1 1 / 7 = 0.14286 0.02212 ## TwoFragment 0 0 0 / 9 = 0.00000 0.00000 ## CrossOver 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 4 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 7 = 0.00000 0.00000 # Closing gap before 1 next to short segment # generation 2: best score out of 20: T0287.try7-al6 234.61800 cost/residue, 338 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 1 1 / 1 = 1.00000 0.00117 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 2 2 / 5 = 0.40000 0.04345 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 4 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 7 = 0.00000 0.00000 ## CloseGap 0 1 1 / 7 = 0.14286 0.44681 ## HealGap 0 7 0 / 14 = 0.00000 0.00000 ## MoveGap 0 4 3 / 13 = 0.23077 0.31993 ## ReduceConstraint 0 1 0 / 13 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 4 = 0.25000 7.78725 ## InsertSpecificFragment 0 3 3 / 50 = 0.06000 0.16917 ## InsertFragment 0 1 1 / 12 = 0.08333 0.01291 ## TwoFragment 0 0 0 / 16 = 0.00000 0.00000 ## CrossOver 0 1 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 11 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 15 = 0.00000 0.00000 # generation 3: best score out of 20: T0287.try7-al6 232.75948 cost/residue, 312 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 1 1 / 1 = 1.00000 0.00117 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 2 2 / 7 = 0.28571 0.03103 ## ClashingRotamer 0 0 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 7 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 11 = 0.09091 0.30668 ## CloseGap 0 3 1 / 11 = 0.09091 0.28433 ## HealGap 0 11 0 / 22 = 0.00000 0.00000 ## MoveGap 0 4 4 / 19 = 0.21053 0.23036 ## ReduceConstraint 0 1 0 / 15 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 8 = 0.12500 3.89363 ## InsertSpecificFragment 0 4 4 / 75 = 0.05333 0.12880 ## InsertFragment 0 3 3 / 21 = 0.14286 0.07700 ## TwoFragment 0 0 0 / 20 = 0.00000 0.00000 ## CrossOver 0 1 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 15 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 22 = 0.00000 0.00000 # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # generation 4: best score out of 20: T0287.try7-al6 232.07941 cost/residue, 304 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 2 1 / 2 = 0.50000 0.00059 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 2 2 / 8 = 0.25000 0.02715 ## ClashingRotamer 0 0 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 1 1 0 / 8 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 21 = 0.04762 0.16064 ## CloseGap 0 8 6 / 18 = 0.33333 0.83971 ## HealGap 0 13 0 / 30 = 0.00000 0.00000 ## MoveGap 0 5 6 / 24 = 0.25000 0.29869 ## ReduceConstraint 0 2 1 / 17 = 0.05882 0.04980 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 25 = 0.04000 1.24596 ## InsertSpecificFragment 0 4 4 / 91 = 0.04396 0.10615 ## InsertFragment 0 4 4 / 24 = 0.16667 0.09588 ## TwoFragment 0 0 0 / 23 = 0.00000 0.00000 ## CrossOver 0 3 2 / 18 = 0.11111 0.13947 ## CrossAndInsert 2 0 0 / 23 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 29 = 0.00000 0.00000 # generation 5: best score out of 20: T0287.try7-al6 231.55206 cost/residue, 228 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 6 = 0.16667 0.00612 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 2 1 / 2 = 0.50000 0.00059 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 2 = 0.50000 0.01570 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 2 2 / 8 = 0.25000 0.02715 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 12 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 31 = 0.03226 0.10882 ## CloseGap 0 10 6 / 26 = 0.23077 0.58134 ## HealGap 0 15 0 / 35 = 0.00000 0.00000 ## MoveGap 0 5 6 / 30 = 0.20000 0.23896 ## ReduceConstraint 0 2 1 / 18 = 0.05556 0.04704 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 29 = 0.03448 1.07410 ## InsertSpecificFragment 0 7 6 / 122 = 0.04918 0.08451 ## InsertFragment 0 4 4 / 30 = 0.13333 0.07670 ## TwoFragment 0 0 0 / 27 = 0.00000 0.00000 ## CrossOver 0 3 2 / 20 = 0.10000 0.12552 ## CrossAndInsert 2 0 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 31 = 0.00000 0.00000 # generation 6: best score out of 20: T0287.try7-al6 228.62721 cost/residue, 231 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 9 = 0.11111 0.00408 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 2 1 / 2 = 0.50000 0.00059 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 2 = 0.50000 0.01570 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 2 2 / 9 = 0.22222 0.02414 ## ClashingRotamer 0 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 13 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 35 = 0.02857 0.09639 ## CloseGap 0 11 6 / 30 = 0.20000 0.50383 ## HealGap 0 15 0 / 39 = 0.00000 0.00000 ## MoveGap 0 5 6 / 33 = 0.18182 0.21723 ## ReduceConstraint 0 3 2 / 21 = 0.09524 0.04771 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 37 = 0.02703 0.84187 ## InsertSpecificFragment 0 9 7 / 144 = 0.04861 0.09557 ## InsertFragment 0 4 4 / 37 = 0.10811 0.06219 ## TwoFragment 0 0 0 / 36 = 0.00000 0.00000 ## CrossOver 0 6 4 / 26 = 0.15385 0.15608 ## CrossAndInsert 2 0 0 / 39 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 38 = 0.00000 0.00000 # generation 7: best score out of 20: T0287.try7-al6 228.62721 cost/residue, 231 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 10 = 0.10000 0.00367 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 2 1 / 2 = 0.50000 0.00059 ## TweakPsiPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 3 1 / 4 = 0.25000 0.04839 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 3 1 / 3 = 0.33333 0.01047 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 3 2 / 11 = 0.18182 0.01975 ## ClashingRotamer 0 0 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 14 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 44 = 0.02273 0.07667 ## CloseGap 0 11 6 / 40 = 0.15000 0.37787 ## HealGap 0 16 0 / 46 = 0.00000 0.00000 ## MoveGap 0 5 6 / 42 = 0.14286 0.17068 ## ReduceConstraint 0 4 3 / 28 = 0.10714 0.03617 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 40 = 0.02500 0.77873 ## InsertSpecificFragment 0 11 8 / 164 = 0.04878 0.08639 ## InsertFragment 0 6 5 / 45 = 0.11111 0.05255 ## TwoFragment 0 0 0 / 38 = 0.00000 0.00000 ## CrossOver 1 7 4 / 33 = 0.12121 0.12297 ## CrossAndInsert 2 0 0 / 45 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 41 = 0.00000 0.00000 # generation 8: best score out of 20: T0287.try7-al6 228.62721 cost/residue, 231 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 10 = 0.10000 0.00367 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 2 1 / 2 = 0.50000 0.00059 ## TweakPsiPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 4 1 / 5 = 0.20000 0.03871 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 3 1 / 3 = 0.33333 0.01047 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 3 2 / 11 = 0.18182 0.01975 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 2 6 0 / 18 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 48 = 0.02083 0.07028 ## CloseGap 0 12 6 / 50 = 0.12000 0.30230 ## HealGap 0 19 0 / 50 = 0.00000 0.00000 ## MoveGap 0 6 6 / 48 = 0.12500 0.14935 ## ReduceConstraint 0 4 3 / 33 = 0.09091 0.03069 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 45 = 0.02222 0.69220 ## InsertSpecificFragment 0 12 8 / 189 = 0.04233 0.07496 ## InsertFragment 0 6 5 / 50 = 0.10000 0.04729 ## TwoFragment 0 0 0 / 47 = 0.00000 0.00000 ## CrossOver 1 7 4 / 37 = 0.10811 0.10968 ## CrossAndInsert 2 0 0 / 51 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 50 = 0.00000 0.00000 # Closing gap before 95 without wiggling. # generation 9: best score out of 20: T0287.try7-al6 227.84041 cost/residue, 230 clashes 0.13835 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 12 = 0.08333 0.00306 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 2 1 / 3 = 0.33333 0.00039 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 6 1 / 7 = 0.14286 0.02765 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 3 1 / 3 = 0.33333 0.01047 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 1 / 6 = 0.16667 0.00165 ## OneRotamer 0 4 3 / 12 = 0.25000 0.01904 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 2 6 0 / 20 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 52 = 0.01923 0.06488 ## CloseGap 0 13 6 / 59 = 0.10169 0.25618 ## HealGap 0 22 0 / 59 = 0.00000 0.00000 ## MoveGap 0 7 7 / 54 = 0.12963 0.16106 ## ReduceConstraint 0 4 3 / 39 = 0.07692 0.02597 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 49 = 0.02041 0.63569 ## InsertSpecificFragment 0 12 8 / 209 = 0.03828 0.06779 ## InsertFragment 0 6 5 / 54 = 0.09259 0.04379 ## TwoFragment 0 0 0 / 51 = 0.00000 0.00000 ## CrossOver 1 7 4 / 41 = 0.09756 0.09898 ## CrossAndInsert 2 0 0 / 58 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 57 = 0.00000 0.00000 # generation 10: best score out of 20: T0287.try7-al6 227.84041 cost/residue, 230 clashes 0.13835 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 13 = 0.07692 0.00282 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 2 1 / 3 = 0.33333 0.06380 ## TweakPsiSubtree 0 4 1 / 5 = 0.20000 0.00034 ## TweakPsiSegment 0 3 2 / 5 = 0.40000 0.00103 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 7 1 / 8 = 0.12500 0.02420 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 4 1 / 4 = 0.25000 0.00785 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 1 / 6 = 0.16667 0.00165 ## OneRotamer 0 5 3 / 14 = 0.21429 0.01632 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 2 6 1 / 24 = 0.04167 0.00018 ## ReduceBreak 0 4 1 / 58 = 0.01724 0.05816 ## CloseGap 0 15 6 / 68 = 0.08824 0.22228 ## HealGap 0 22 0 / 65 = 0.00000 0.00000 ## MoveGap 0 7 7 / 59 = 0.11864 0.14741 ## ReduceConstraint 0 4 3 / 45 = 0.06667 0.02250 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 56 = 0.01786 0.55623 ## InsertSpecificFragment 0 13 8 / 227 = 0.03524 0.06241 ## InsertFragment 0 6 5 / 60 = 0.08333 0.03941 ## TwoFragment 0 0 0 / 57 = 0.00000 0.00000 ## CrossOver 1 8 4 / 45 = 0.08889 0.09018 ## CrossAndInsert 2 0 0 / 66 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 61 = 0.00000 0.00000 # generation 11: best score out of 20: T0287.try7-al6 227.84041 cost/residue, 230 clashes 0.13835 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 13 = 0.07692 0.00282 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 5 2 / 6 = 0.33333 0.03191 ## TweakPsiSubtree 0 4 1 / 5 = 0.20000 0.00034 ## TweakPsiSegment 0 3 2 / 6 = 0.33333 0.00086 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 10 1 / 11 = 0.09091 0.01760 ## TweakHbondSubtree 0 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 5 1 / 6 = 0.16667 0.00523 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 1 / 6 = 0.16667 0.00165 ## OneRotamer 0 5 3 / 14 = 0.21429 0.01632 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 2 8 1 / 28 = 0.03571 0.00016 ## ReduceBreak 0 4 1 / 62 = 0.01613 0.05441 ## CloseGap 0 15 6 / 77 = 0.07792 0.19630 ## HealGap 0 23 0 / 68 = 0.00000 0.00000 ## MoveGap 0 7 7 / 64 = 0.10938 0.13590 ## ReduceConstraint 0 4 3 / 51 = 0.05882 0.01986 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 63 = 0.01587 0.49443 ## InsertSpecificFragment 0 13 8 / 246 = 0.03252 0.05759 ## InsertFragment 0 7 5 / 66 = 0.07576 0.03583 ## TwoFragment 0 0 0 / 62 = 0.00000 0.00000 ## CrossOver 1 8 4 / 48 = 0.08333 0.08454 ## CrossAndInsert 2 0 0 / 74 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 68 = 0.00000 0.00000 # generation 12: best score out of 20: T0287.try7-al6 227.84041 cost/residue, 230 clashes 0.13835 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 13 = 0.07692 0.00282 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 6 3 / 7 = 0.42857 0.05305 ## TweakPsiSubtree 0 4 1 / 5 = 0.20000 0.00034 ## TweakPsiSegment 0 4 2 / 7 = 0.28571 0.00073 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 10 1 / 11 = 0.09091 0.01760 ## TweakHbondSubtree 0 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 5 1 / 6 = 0.16667 0.00523 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 7 = 0.14286 0.00141 ## OneRotamer 0 6 3 / 15 = 0.20000 0.01523 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 2 10 1 / 32 = 0.03125 0.00014 ## ReduceBreak 0 4 1 / 69 = 0.01449 0.04889 ## CloseGap 0 17 6 / 89 = 0.06742 0.16983 ## HealGap 0 26 0 / 71 = 0.00000 0.00000 ## MoveGap 0 7 7 / 68 = 0.10294 0.12790 ## ReduceConstraint 0 4 3 / 56 = 0.05357 0.01808 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 70 = 0.01429 0.44499 ## InsertSpecificFragment 0 13 8 / 265 = 0.03019 0.05346 ## InsertFragment 0 7 5 / 78 = 0.06410 0.03032 ## TwoFragment 0 0 0 / 66 = 0.00000 0.00000 ## CrossOver 1 8 4 / 51 = 0.07843 0.07957 ## CrossAndInsert 2 1 0 / 84 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 71 = 0.00000 0.00000 # generation 13: best score out of 20: T0287.try7-al6 227.60793 cost/residue, 228 clashes 0.14019 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 14 = 0.07143 0.00262 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 7 3 / 9 = 0.33333 0.04126 ## TweakPsiSubtree 0 5 2 / 6 = 0.33333 0.00380 ## TweakPsiSegment 0 6 2 / 9 = 0.22222 0.00057 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 10 1 / 12 = 0.08333 0.01613 ## TweakHbondSubtree 0 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 5 1 / 6 = 0.16667 0.00523 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 8 = 0.12500 0.00123 ## OneRotamer 0 6 3 / 16 = 0.18750 0.01428 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 2 10 1 / 34 = 0.02941 0.00013 ## ReduceBreak 0 5 1 / 75 = 0.01333 0.04498 ## CloseGap 0 17 6 / 102 = 0.05882 0.14818 ## HealGap 0 30 0 / 76 = 0.00000 0.00000 ## MoveGap 0 8 8 / 77 = 0.10390 0.12248 ## ReduceConstraint 0 4 3 / 59 = 0.05085 0.01716 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 76 = 0.01316 0.40986 ## InsertSpecificFragment 0 13 8 / 284 = 0.02817 0.04988 ## InsertFragment 0 7 5 / 85 = 0.05882 0.02782 ## TwoFragment 0 0 0 / 72 = 0.00000 0.00000 ## CrossOver 1 8 4 / 56 = 0.07143 0.07247 ## CrossAndInsert 2 1 0 / 85 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 75 = 0.00000 0.00000 # generation 14: best score out of 20: T0287.try7-al6 227.60620 cost/residue, 228 clashes 0.14019 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 15 = 0.06667 0.00245 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 10 3 / 12 = 0.25000 0.03095 ## TweakPsiSubtree 0 5 2 / 6 = 0.33333 0.00380 ## TweakPsiSegment 0 6 2 / 9 = 0.22222 0.00057 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 11 1 / 13 = 0.07692 0.01489 ## TweakHbondSubtree 0 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 6 1 / 7 = 0.14286 0.00449 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 2 / 10 = 0.20000 0.00116 ## OneRotamer 0 9 3 / 20 = 0.15000 0.01143 ## ClashingRotamer 0 0 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 2 10 1 / 38 = 0.02632 0.00012 ## ReduceBreak 0 5 1 / 80 = 0.01250 0.04217 ## CloseGap 0 17 6 / 109 = 0.05505 0.13867 ## HealGap 0 30 0 / 77 = 0.00000 0.00000 ## MoveGap 0 8 8 / 85 = 0.09412 0.11095 ## ReduceConstraint 0 4 3 / 65 = 0.04615 0.01558 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 83 = 0.01205 0.37529 ## InsertSpecificFragment 0 13 8 / 306 = 0.02614 0.04630 ## InsertFragment 0 7 5 / 89 = 0.05618 0.02657 ## TwoFragment 0 0 0 / 81 = 0.00000 0.00000 ## CrossOver 1 8 4 / 57 = 0.07018 0.07120 ## CrossAndInsert 2 2 0 / 89 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 78 = 0.00000 0.00000 # generation 15: best score out of 20: T0287.try7-al6 227.60620 cost/residue, 228 clashes 0.14019 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 17 = 0.05882 0.00216 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 10 3 / 12 = 0.25000 0.03095 ## TweakPsiSubtree 0 6 3 / 7 = 0.42857 0.00338 ## TweakPsiSegment 0 7 2 / 10 = 0.20000 0.00051 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 13 1 / 15 = 0.06667 0.01290 ## TweakHbondSubtree 0 5 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 6 1 / 7 = 0.14286 0.00449 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 2 / 10 = 0.20000 0.00116 ## OneRotamer 0 10 3 / 21 = 0.14286 0.01088 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 10 1 / 40 = 0.02500 0.00011 ## ReduceBreak 0 5 1 / 86 = 0.01163 0.03923 ## CloseGap 0 17 6 / 117 = 0.05128 0.12919 ## HealGap 0 31 0 / 78 = 0.00000 0.00000 ## MoveGap 0 10 8 / 96 = 0.08333 0.09824 ## ReduceConstraint 0 4 3 / 69 = 0.04348 0.01468 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 89 = 0.01124 0.34999 ## InsertSpecificFragment 0 13 8 / 331 = 0.02417 0.04280 ## InsertFragment 0 7 5 / 95 = 0.05263 0.02489 ## TwoFragment 0 0 0 / 90 = 0.00000 0.00000 ## CrossOver 1 10 4 / 61 = 0.06557 0.06653 ## CrossAndInsert 2 2 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 80 = 0.00000 0.00000 # generation 16: best score out of 20: T0287.try7-al6 227.51997 cost/residue, 224 clashes 0.14019 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 1 / 5 = 0.20000 0.01395 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 18 = 0.05556 0.00204 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 12 3 / 15 = 0.20000 0.02476 ## TweakPsiSubtree 0 7 4 / 8 = 0.50000 0.00307 ## TweakPsiSegment 0 7 2 / 10 = 0.20000 0.00051 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 13 1 / 15 = 0.06667 0.01290 ## TweakHbondSubtree 0 5 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 6 1 / 7 = 0.14286 0.00449 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 2 / 11 = 0.18182 0.00105 ## OneRotamer 0 10 3 / 21 = 0.14286 0.01088 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 43 = 0.02326 0.00010 ## ReduceBreak 0 6 1 / 94 = 0.01064 0.03589 ## CloseGap 0 17 6 / 130 = 0.04615 0.11627 ## HealGap 0 31 0 / 79 = 0.00000 0.00000 ## MoveGap 0 10 8 / 101 = 0.07921 0.09338 ## ReduceConstraint 0 5 3 / 73 = 0.04110 0.01387 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 95 = 0.01053 0.32788 ## InsertSpecificFragment 0 13 8 / 356 = 0.02247 0.03980 ## InsertFragment 0 8 5 / 102 = 0.04902 0.02318 ## TwoFragment 0 0 0 / 95 = 0.00000 0.00000 ## CrossOver 2 12 5 / 64 = 0.07812 0.06478 ## CrossAndInsert 2 4 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 83 = 0.00000 0.00000 # Closing gap before 65 without wiggling. # generation 17: best score out of 20: T0287.try7-al6 227.44402 cost/residue, 231 clashes 0.14064 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 2 / 9 = 0.22222 0.02477 ## JiggleSubtree 0 3 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 18 = 0.05556 0.00204 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 14 3 / 17 = 0.17647 0.02184 ## TweakPsiSubtree 0 10 5 / 12 = 0.41667 0.00207 ## TweakPsiSegment 0 7 2 / 10 = 0.20000 0.00051 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 13 1 / 15 = 0.06667 0.01290 ## TweakHbondSubtree 0 7 1 / 7 = 0.14286 0.01085 ## TweakHbondSegment 0 6 1 / 7 = 0.14286 0.00449 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 2 / 12 = 0.16667 0.00097 ## OneRotamer 0 10 3 / 22 = 0.13636 0.01039 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 44 = 0.02273 0.00010 ## ReduceBreak 0 6 1 / 99 = 0.01010 0.03408 ## CloseGap 0 17 6 / 138 = 0.04348 0.10953 ## HealGap 0 31 0 / 87 = 0.00000 0.00000 ## MoveGap 0 10 8 / 108 = 0.07407 0.08733 ## ReduceConstraint 0 5 3 / 78 = 0.03846 0.01298 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 104 = 0.00962 0.29951 ## InsertSpecificFragment 0 14 9 / 376 = 0.02394 0.03793 ## InsertFragment 0 8 5 / 104 = 0.04808 0.02274 ## TwoFragment 0 0 0 / 97 = 0.00000 0.00000 ## CrossOver 2 12 5 / 71 = 0.07042 0.05840 ## CrossAndInsert 2 4 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 90 = 0.00000 0.00000 # generation 18: best score out of 20: T0287.try7-al6 227.38501 cost/residue, 228 clashes 0.14019 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 3 / 13 = 0.23077 0.02251 ## JiggleSubtree 0 4 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 18 = 0.05556 0.00204 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 14 3 / 17 = 0.17647 0.02184 ## TweakPsiSubtree 0 10 5 / 12 = 0.41667 0.00207 ## TweakPsiSegment 0 7 2 / 10 = 0.20000 0.00051 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 14 1 / 16 = 0.06250 0.01210 ## TweakHbondSubtree 0 7 1 / 7 = 0.14286 0.01085 ## TweakHbondSegment 0 7 1 / 8 = 0.12500 0.00393 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 3 / 13 = 0.23077 0.00106 ## OneRotamer 0 12 4 / 24 = 0.16667 0.01113 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 46 = 0.02174 0.00010 ## ReduceBreak 0 6 1 / 105 = 0.00952 0.03213 ## CloseGap 0 17 6 / 149 = 0.04027 0.10144 ## HealGap 0 31 0 / 88 = 0.00000 0.00000 ## MoveGap 0 10 8 / 118 = 0.06780 0.07992 ## ReduceConstraint 0 5 3 / 85 = 0.03529 0.01191 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 119 = 0.00840 0.26176 ## InsertSpecificFragment 0 14 9 / 395 = 0.02278 0.03610 ## InsertFragment 0 8 5 / 108 = 0.04630 0.02190 ## TwoFragment 0 0 0 / 100 = 0.00000 0.00000 ## CrossOver 2 13 5 / 75 = 0.06667 0.05528 ## CrossAndInsert 2 4 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 92 = 0.00000 0.00000 # generation 19: best score out of 20: T0287.try7-al6 227.37541 cost/residue, 228 clashes 0.14019 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 4 / 15 = 0.26667 0.02015 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 20 = 0.05000 0.00184 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00000 ## TweakPhiSegment 0 15 3 / 18 = 0.16667 0.02063 ## TweakPsiSubtree 0 10 5 / 12 = 0.41667 0.00207 ## TweakPsiSegment 0 8 3 / 11 = 0.27273 0.00051 ## TweakPsiPhiSubtree 1 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 14 1 / 16 = 0.06250 0.01210 ## TweakHbondSubtree 0 9 1 / 9 = 0.11111 0.00844 ## TweakHbondSegment 0 8 1 / 9 = 0.11111 0.00349 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 4 / 15 = 0.26667 0.00107 ## OneRotamer 0 12 4 / 24 = 0.16667 0.01113 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 48 = 0.02083 0.00009 ## ReduceBreak 0 6 1 / 112 = 0.00893 0.03012 ## CloseGap 0 17 6 / 159 = 0.03774 0.09506 ## HealGap 0 33 0 / 90 = 0.00000 0.00000 ## MoveGap 0 10 8 / 129 = 0.06202 0.07311 ## ReduceConstraint 0 5 3 / 87 = 0.03448 0.01164 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 128 = 0.00781 0.24335 ## InsertSpecificFragment 0 15 10 / 409 = 0.02445 0.03518 ## InsertFragment 0 8 5 / 117 = 0.04274 0.02021 ## TwoFragment 0 0 0 / 106 = 0.00000 0.00000 ## CrossOver 2 13 5 / 80 = 0.06250 0.05183 ## CrossAndInsert 2 4 0 / 111 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 98 = 0.00000 0.00000 # generation 20: best score out of 20: T0287.try7-al6 227.35628 cost/residue, 229 clashes 0.13886 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 16 = 0.25000 0.01889 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 21 = 0.04762 0.00175 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 0 15 3 / 19 = 0.15789 0.01954 ## TweakPsiSubtree 0 11 5 / 13 = 0.38462 0.00191 ## TweakPsiSegment 0 8 3 / 11 = 0.27273 0.00051 ## TweakPsiPhiSubtree 1 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 14 1 / 16 = 0.06250 0.01210 ## TweakHbondSubtree 0 12 2 / 12 = 0.16667 0.00872 ## TweakHbondSegment 0 9 1 / 10 = 0.10000 0.00314 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 5 / 16 = 0.31250 0.00112 ## OneRotamer 0 14 4 / 28 = 0.14286 0.00954 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 50 = 0.02000 0.00009 ## ReduceBreak 0 6 1 / 119 = 0.00840 0.02835 ## CloseGap 0 17 6 / 169 = 0.03550 0.08944 ## HealGap 0 34 0 / 95 = 0.00000 0.00000 ## MoveGap 0 10 8 / 133 = 0.06015 0.07091 ## ReduceConstraint 0 6 3 / 91 = 0.03297 0.01113 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 136 = 0.00735 0.22904 ## InsertSpecificFragment 0 15 10 / 434 = 0.02304 0.03315 ## InsertFragment 0 8 5 / 123 = 0.04065 0.01923 ## TwoFragment 0 0 0 / 108 = 0.00000 0.00000 ## CrossOver 2 13 5 / 85 = 0.05882 0.04878 ## CrossAndInsert 2 4 0 / 116 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 98 = 0.00000 0.00000 # generation 21: best score out of 20: T0287.try7-al6 227.32622 cost/residue, 229 clashes 0.13783 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 17 = 0.23529 0.01778 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 23 = 0.04348 0.00160 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 1 17 3 / 22 = 0.13636 0.01688 ## TweakPsiSubtree 0 12 5 / 14 = 0.35714 0.00178 ## TweakPsiSegment 0 8 3 / 11 = 0.27273 0.00051 ## TweakPsiPhiSubtree 1 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 16 1 / 19 = 0.05263 0.01019 ## TweakHbondSubtree 0 15 3 / 15 = 0.20000 0.00898 ## TweakHbondSegment 0 9 1 / 11 = 0.09091 0.00285 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 5 / 16 = 0.31250 0.00112 ## OneRotamer 0 16 5 / 30 = 0.16667 0.01299 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 50 = 0.02000 0.00009 ## ReduceBreak 0 6 1 / 127 = 0.00787 0.02656 ## CloseGap 0 17 6 / 175 = 0.03429 0.08637 ## HealGap 0 34 0 / 97 = 0.00000 0.00000 ## MoveGap 0 10 8 / 139 = 0.05755 0.06785 ## ReduceConstraint 0 6 3 / 97 = 0.03093 0.01044 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 146 = 0.00685 0.21335 ## InsertSpecificFragment 0 15 10 / 457 = 0.02188 0.03149 ## InsertFragment 0 8 5 / 130 = 0.03846 0.01819 ## TwoFragment 0 0 0 / 114 = 0.00000 0.00000 ## CrossOver 2 15 5 / 89 = 0.05618 0.04659 ## CrossAndInsert 2 4 0 / 117 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 102 = 0.00000 0.00000 # Closing gap before 17 without wiggling. # generation 22: best score out of 20: T0287.try7-al6 227.15382 cost/residue, 228 clashes 0.14078 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 4 / 21 = 0.19048 0.01439 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 26 = 0.03846 0.00141 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 2 19 3 / 25 = 0.12000 0.01485 ## TweakPsiSubtree 0 12 5 / 14 = 0.35714 0.00178 ## TweakPsiSegment 0 9 4 / 12 = 0.33333 0.00068 ## TweakPsiPhiSubtree 1 4 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 18 3 / 21 = 0.14286 0.01043 ## TweakHbondSubtree 0 18 4 / 19 = 0.21053 0.01926 ## TweakHbondSegment 0 9 1 / 11 = 0.09091 0.00285 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 5 / 16 = 0.31250 0.00112 ## OneRotamer 0 17 6 / 33 = 0.18182 0.01446 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 50 = 0.02000 0.00009 ## ReduceBreak 0 6 1 / 137 = 0.00730 0.02462 ## CloseGap 0 18 6 / 184 = 0.03261 0.08215 ## HealGap 0 34 0 / 100 = 0.00000 0.00000 ## MoveGap 0 10 8 / 148 = 0.05405 0.06372 ## ReduceConstraint 0 6 3 / 100 = 0.03000 0.01013 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 154 = 0.00649 0.20227 ## InsertSpecificFragment 0 15 10 / 468 = 0.02137 0.03075 ## InsertFragment 0 8 5 / 135 = 0.03704 0.01752 ## TwoFragment 0 0 0 / 115 = 0.00000 0.00000 ## CrossOver 3 15 5 / 97 = 0.05155 0.04274 ## CrossAndInsert 4 4 0 / 125 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 104 = 0.00000 0.00000 # generation 23: best score out of 20: T0287.try7-al6 227.14583 cost/residue, 229 clashes 0.14058 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 4 / 26 = 0.15385 0.01163 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 26 = 0.03846 0.00141 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 2 21 4 / 27 = 0.14815 0.01375 ## TweakPsiSubtree 0 14 6 / 17 = 0.35294 0.00186 ## TweakPsiSegment 0 11 5 / 14 = 0.35714 0.00116 ## TweakPsiPhiSubtree 1 4 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 18 3 / 21 = 0.14286 0.01043 ## TweakHbondSubtree 0 21 5 / 25 = 0.20000 0.01471 ## TweakHbondSegment 0 9 1 / 11 = 0.09091 0.00285 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 5 / 17 = 0.29412 0.00105 ## OneRotamer 0 19 7 / 38 = 0.18421 0.01381 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 51 = 0.01961 0.00009 ## ReduceBreak 0 6 1 / 140 = 0.00714 0.02410 ## CloseGap 0 18 6 / 193 = 0.03109 0.07832 ## HealGap 0 34 0 / 103 = 0.00000 0.00000 ## MoveGap 0 10 8 / 157 = 0.05096 0.06007 ## ReduceConstraint 0 6 3 / 104 = 0.02885 0.00974 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 169 = 0.00592 0.18431 ## InsertSpecificFragment 0 15 10 / 475 = 0.02105 0.03029 ## InsertFragment 0 8 5 / 144 = 0.03472 0.01642 ## TwoFragment 0 0 0 / 118 = 0.00000 0.00000 ## CrossOver 3 15 5 / 103 = 0.04854 0.04025 ## CrossAndInsert 4 4 0 / 126 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 108 = 0.00000 0.00000 # generation 24: best score out of 20: T0287.try7-al6 227.07993 cost/residue, 226 clashes 0.13783 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 5 / 31 = 0.16129 0.01690 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 26 = 0.03846 0.00141 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 3 26 5 / 32 = 0.15625 0.01161 ## TweakPsiSubtree 0 15 8 / 20 = 0.40000 0.00170 ## TweakPsiSegment 0 11 5 / 15 = 0.33333 0.00108 ## TweakPsiPhiSubtree 1 4 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 18 3 / 21 = 0.14286 0.01043 ## TweakHbondSubtree 0 23 5 / 29 = 0.17241 0.01268 ## TweakHbondSegment 0 9 1 / 12 = 0.08333 0.00262 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 5 / 18 = 0.27778 0.00100 ## OneRotamer 0 20 7 / 40 = 0.17500 0.01312 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 2 11 1 / 51 = 0.01961 0.00009 ## ReduceBreak 0 6 1 / 146 = 0.00685 0.02311 ## CloseGap 0 18 6 / 203 = 0.02956 0.07446 ## HealGap 0 34 0 / 107 = 0.00000 0.00000 ## MoveGap 0 10 8 / 162 = 0.04938 0.05822 ## ReduceConstraint 0 6 3 / 108 = 0.02778 0.00938 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 171 = 0.00585 0.18216 ## InsertSpecificFragment 0 15 10 / 496 = 0.02016 0.02901 ## InsertFragment 0 8 5 / 146 = 0.03425 0.01620 ## TwoFragment 0 0 0 / 125 = 0.00000 0.00000 ## CrossOver 3 16 5 / 108 = 0.04630 0.03839 ## CrossAndInsert 4 4 0 / 130 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 112 = 0.00000 0.00000 # Closing gap before 142 without wiggling. # generation 25: best score out of 20: T0287.try7-al6 227.07993 cost/residue, 226 clashes 0.13783 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 36 = 0.13889 0.01456 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 27 = 0.03704 0.00136 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 27 5 / 34 = 0.14706 0.01092 ## TweakPsiSubtree 0 15 8 / 20 = 0.40000 0.00170 ## TweakPsiSegment 0 12 5 / 16 = 0.31250 0.00101 ## TweakPsiPhiSubtree 1 5 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 20 4 / 23 = 0.17391 0.01090 ## TweakHbondSubtree 0 25 5 / 32 = 0.15625 0.01149 ## TweakHbondSegment 0 9 1 / 13 = 0.07692 0.00242 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 5 / 18 = 0.27778 0.00100 ## OneRotamer 0 23 7 / 45 = 0.15556 0.01166 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 2 12 1 / 53 = 0.01887 0.00008 ## ReduceBreak 0 6 1 / 155 = 0.00645 0.02176 ## CloseGap 0 18 6 / 217 = 0.02765 0.06965 ## HealGap 0 34 0 / 109 = 0.00000 0.00000 ## MoveGap 0 10 8 / 167 = 0.04790 0.05647 ## ReduceConstraint 0 6 3 / 114 = 0.02632 0.00888 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 1 / 176 = 0.00568 0.17698 ## InsertSpecificFragment 0 15 10 / 511 = 0.01957 0.02816 ## InsertFragment 0 8 5 / 149 = 0.03356 0.01587 ## TwoFragment 0 0 0 / 128 = 0.00000 0.00000 ## CrossOver 3 16 5 / 113 = 0.04425 0.03669 ## CrossAndInsert 5 4 0 / 133 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 118 = 0.00000 0.00000 # generation 26: best score out of 20: T0287.try7-al6 226.70969 cost/residue, 225 clashes 0.14058 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 6 / 39 = 0.15385 0.01419 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 27 = 0.03704 0.00136 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 27 5 / 36 = 0.13889 0.01032 ## TweakPsiSubtree 0 15 8 / 20 = 0.40000 0.00170 ## TweakPsiSegment 0 13 5 / 17 = 0.29412 0.00095 ## TweakPsiPhiSubtree 1 5 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 20 4 / 24 = 0.16667 0.01045 ## TweakHbondSubtree 0 31 8 / 39 = 0.20513 0.01460 ## TweakHbondSegment 0 9 1 / 14 = 0.07143 0.00224 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 5 / 18 = 0.27778 0.00100 ## OneRotamer 0 24 7 / 46 = 0.15217 0.01141 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 2 13 2 / 56 = 0.03571 0.00787 ## ReduceBreak 0 6 1 / 157 = 0.00637 0.02149 ## CloseGap 0 18 6 / 231 = 0.02597 0.06543 ## HealGap 0 34 0 / 115 = 0.00000 0.00000 ## MoveGap 0 10 8 / 175 = 0.04571 0.05389 ## ReduceConstraint 0 6 3 / 117 = 0.02564 0.00866 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 190 = 0.00526 0.16394 ## InsertSpecificFragment 0 15 10 / 525 = 0.01905 0.02741 ## InsertFragment 0 8 5 / 153 = 0.03268 0.01546 ## TwoFragment 0 0 0 / 132 = 0.00000 0.00000 ## CrossOver 4 16 5 / 118 = 0.04237 0.03514 ## CrossAndInsert 5 4 0 / 136 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 121 = 0.00000 0.00000 # generation 27: best score out of 20: T0287.try7-al6 226.70969 cost/residue, 225 clashes 0.14058 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 6 / 42 = 0.14286 0.01318 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 28 = 0.03571 0.00131 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 27 5 / 38 = 0.13158 0.00977 ## TweakPsiSubtree 0 17 8 / 22 = 0.36364 0.00154 ## TweakPsiSegment 0 13 5 / 17 = 0.29412 0.00095 ## TweakPsiPhiSubtree 1 7 0 / 7 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 23 6 / 28 = 0.21429 0.00997 ## TweakHbondSubtree 0 35 8 / 45 = 0.17778 0.01266 ## TweakHbondSegment 0 9 1 / 14 = 0.07143 0.00224 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 16 6 / 20 = 0.30000 0.00097 ## OneRotamer 0 24 7 / 47 = 0.14894 0.01117 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 2 13 2 / 67 = 0.02985 0.00658 ## ReduceBreak 0 6 1 / 160 = 0.00625 0.02108 ## CloseGap 0 18 6 / 238 = 0.02521 0.06351 ## HealGap 0 34 0 / 120 = 0.00000 0.00000 ## MoveGap 0 10 8 / 182 = 0.04396 0.05182 ## ReduceConstraint 0 6 3 / 121 = 0.02479 0.00837 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 196 = 0.00510 0.15892 ## InsertSpecificFragment 0 15 10 / 540 = 0.01852 0.02665 ## InsertFragment 0 8 5 / 157 = 0.03185 0.01506 ## TwoFragment 0 0 0 / 136 = 0.00000 0.00000 ## CrossOver 4 16 5 / 120 = 0.04167 0.03455 ## CrossAndInsert 5 4 0 / 139 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 123 = 0.00000 0.00000 # generation 28: best score out of 20: T0287.try7-al6 226.55325 cost/residue, 222 clashes 0.14058 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 6 / 45 = 0.13333 0.01230 ## JiggleSubtree 0 4 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 29 = 0.03448 0.00127 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 28 5 / 39 = 0.12821 0.00952 ## TweakPsiSubtree 0 18 9 / 23 = 0.39130 0.00149 ## TweakPsiSegment 0 14 5 / 18 = 0.27778 0.00090 ## TweakPsiPhiSubtree 2 8 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 23 6 / 28 = 0.21429 0.00997 ## TweakHbondSubtree 1 36 9 / 46 = 0.19565 0.01287 ## TweakHbondSegment 0 9 1 / 14 = 0.07143 0.00224 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 7 / 24 = 0.29167 0.00126 ## OneRotamer 0 26 8 / 51 = 0.15686 0.01336 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 2 13 2 / 74 = 0.02703 0.00595 ## ReduceBreak 0 7 2 / 167 = 0.01198 0.02090 ## CloseGap 0 18 6 / 246 = 0.02439 0.06144 ## HealGap 0 35 0 / 122 = 0.00000 0.00000 ## MoveGap 0 10 8 / 190 = 0.04211 0.04964 ## ReduceConstraint 0 6 3 / 127 = 0.02362 0.00797 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 200 = 0.00500 0.15575 ## InsertSpecificFragment 0 15 10 / 559 = 0.01789 0.02574 ## InsertFragment 0 8 5 / 159 = 0.03145 0.01487 ## TwoFragment 0 0 0 / 138 = 0.00000 0.00000 ## CrossOver 4 16 5 / 123 = 0.04065 0.03371 ## CrossAndInsert 5 4 0 / 146 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 130 = 0.00000 0.00000 # generation 29: best score out of 20: T0287.try7-al6 226.55325 cost/residue, 222 clashes 0.14058 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 8 / 47 = 0.17021 0.01245 ## JiggleSubtree 0 4 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 30 = 0.03333 0.00122 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 28 5 / 39 = 0.12821 0.00952 ## TweakPsiSubtree 0 18 9 / 24 = 0.37500 0.00143 ## TweakPsiSegment 0 14 5 / 18 = 0.27778 0.00090 ## TweakPsiPhiSubtree 2 8 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 28 8 / 36 = 0.22222 0.00911 ## TweakHbondSubtree 1 40 9 / 51 = 0.17647 0.01161 ## TweakHbondSegment 0 10 2 / 15 = 0.13333 0.01428 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 7 / 24 = 0.29167 0.00126 ## OneRotamer 0 27 9 / 56 = 0.16071 0.01258 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 2 13 2 / 79 = 0.02532 0.00558 ## ReduceBreak 0 7 2 / 175 = 0.01143 0.01994 ## CloseGap 0 18 6 / 249 = 0.02410 0.06070 ## HealGap 0 35 0 / 125 = 0.00000 0.00000 ## MoveGap 0 10 8 / 199 = 0.04020 0.04739 ## ReduceConstraint 0 6 3 / 134 = 0.02239 0.00756 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 206 = 0.00485 0.15121 ## InsertSpecificFragment 0 15 10 / 570 = 0.01754 0.02524 ## InsertFragment 0 8 5 / 162 = 0.03086 0.01460 ## TwoFragment 0 0 0 / 143 = 0.00000 0.00000 ## CrossOver 4 16 5 / 128 = 0.03906 0.03239 ## CrossAndInsert 5 4 0 / 149 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # generation 30: best score out of 20: T0287.try7-al6 226.55325 cost/residue, 222 clashes 0.14058 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 19 8 / 50 = 0.16000 0.01170 ## JiggleSubtree 0 4 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 30 = 0.03333 0.00122 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 29 5 / 40 = 0.12500 0.00928 ## TweakPsiSubtree 0 18 9 / 24 = 0.37500 0.00143 ## TweakPsiSegment 0 15 5 / 19 = 0.26316 0.00085 ## TweakPsiPhiSubtree 2 8 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 30 8 / 38 = 0.21053 0.00863 ## TweakHbondSubtree 1 41 9 / 53 = 0.16981 0.01117 ## TweakHbondSegment 0 13 3 / 24 = 0.12500 0.01013 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 25 = 0.32000 0.00186 ## OneRotamer 0 28 9 / 59 = 0.15254 0.01194 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 2 14 2 / 83 = 0.02410 0.00531 ## ReduceBreak 0 7 2 / 177 = 0.01130 0.01972 ## CloseGap 0 18 6 / 255 = 0.02353 0.05927 ## HealGap 0 35 0 / 128 = 0.00000 0.00000 ## MoveGap 0 10 8 / 209 = 0.03828 0.04512 ## ReduceConstraint 0 6 3 / 139 = 0.02158 0.00729 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 213 = 0.00469 0.14624 ## InsertSpecificFragment 0 15 10 / 585 = 0.01709 0.02460 ## InsertFragment 0 8 5 / 170 = 0.02941 0.01391 ## TwoFragment 0 0 0 / 146 = 0.00000 0.00000 ## CrossOver 4 16 5 / 132 = 0.03788 0.03141 ## CrossAndInsert 5 4 0 / 155 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 137 = 0.00000 0.00000 # generation 31: best score out of 20: T0287.try7-al6 226.44089 cost/residue, 221 clashes 0.14007 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 10 / 55 = 0.18182 0.01128 ## JiggleSubtree 0 4 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 30 = 0.03333 0.00122 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 30 5 / 42 = 0.11905 0.00884 ## TweakPsiSubtree 0 18 9 / 24 = 0.37500 0.00143 ## TweakPsiSegment 0 16 5 / 20 = 0.25000 0.00081 ## TweakPsiPhiSubtree 2 9 1 / 9 = 0.11111 0.00100 ## TweakPsiPhiSegment 0 31 9 / 39 = 0.23077 0.00849 ## TweakHbondSubtree 1 43 11 / 57 = 0.19298 0.01322 ## TweakHbondSegment 0 15 5 / 28 = 0.17857 0.01714 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 21 8 / 27 = 0.29630 0.00172 ## OneRotamer 0 29 10 / 64 = 0.15625 0.01129 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 2 14 2 / 86 = 0.02326 0.00512 ## ReduceBreak 0 7 2 / 182 = 0.01099 0.01918 ## CloseGap 0 18 6 / 263 = 0.02281 0.05747 ## HealGap 0 35 0 / 133 = 0.00000 0.00000 ## MoveGap 0 10 8 / 213 = 0.03756 0.04428 ## ReduceConstraint 0 6 3 / 144 = 0.02083 0.00703 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 219 = 0.00457 0.14223 ## InsertSpecificFragment 0 15 10 / 607 = 0.01647 0.02370 ## InsertFragment 0 8 5 / 172 = 0.02907 0.01375 ## TwoFragment 0 0 0 / 150 = 0.00000 0.00000 ## CrossOver 4 16 5 / 136 = 0.03676 0.03049 ## CrossAndInsert 5 4 0 / 158 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 141 = 0.00000 0.00000 # generation 32: best score out of 20: T0287.try7-al6 226.40997 cost/residue, 220 clashes 0.14007 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 11 / 59 = 0.18644 0.01084 ## JiggleSubtree 0 4 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 31 = 0.03226 0.00118 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 30 6 / 43 = 0.13953 0.00864 ## TweakPsiSubtree 0 18 9 / 24 = 0.37500 0.00143 ## TweakPsiSegment 0 16 5 / 20 = 0.25000 0.00081 ## TweakPsiPhiSubtree 2 9 1 / 9 = 0.11111 0.00100 ## TweakPsiPhiSegment 0 32 9 / 41 = 0.21951 0.00808 ## TweakHbondSubtree 1 45 11 / 62 = 0.17742 0.01215 ## TweakHbondSegment 0 19 7 / 37 = 0.18919 0.01520 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 22 8 / 28 = 0.28571 0.00166 ## OneRotamer 0 31 11 / 70 = 0.15714 0.01077 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 3 15 2 / 90 = 0.02222 0.00490 ## ReduceBreak 0 7 2 / 182 = 0.01099 0.01918 ## CloseGap 0 18 6 / 267 = 0.02247 0.05661 ## HealGap 0 35 0 / 139 = 0.00000 0.00000 ## MoveGap 0 10 8 / 219 = 0.03653 0.04306 ## ReduceConstraint 0 6 3 / 146 = 0.02055 0.00694 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 227 = 0.00441 0.13722 ## InsertSpecificFragment 0 15 10 / 624 = 0.01603 0.02306 ## InsertFragment 0 8 5 / 175 = 0.02857 0.01351 ## TwoFragment 0 0 0 / 156 = 0.00000 0.00000 ## CrossOver 4 16 5 / 140 = 0.03571 0.02961 ## CrossAndInsert 5 4 0 / 161 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 147 = 0.00000 0.00000 # generation 33: best score out of 20: T0287.try7-al6 226.38364 cost/residue, 221 clashes 0.14101 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 12 / 65 = 0.18462 0.01108 ## JiggleSubtree 0 4 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 32 = 0.03125 0.00115 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 3 31 6 / 44 = 0.13636 0.00844 ## TweakPsiSubtree 0 18 9 / 24 = 0.37500 0.00143 ## TweakPsiSegment 0 17 6 / 22 = 0.27273 0.00074 ## TweakPsiPhiSubtree 2 9 1 / 9 = 0.11111 0.00100 ## TweakPsiPhiSegment 0 33 9 / 43 = 0.20930 0.00770 ## TweakHbondSubtree 1 46 11 / 68 = 0.16176 0.01108 ## TweakHbondSegment 0 24 9 / 46 = 0.19565 0.01297 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 23 8 / 29 = 0.27586 0.00161 ## OneRotamer 0 31 11 / 76 = 0.14474 0.00992 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 3 15 2 / 98 = 0.02041 0.00450 ## ReduceBreak 0 7 2 / 187 = 0.01070 0.01866 ## CloseGap 0 18 6 / 278 = 0.02158 0.05437 ## HealGap 0 35 0 / 140 = 0.00000 0.00000 ## MoveGap 0 10 8 / 225 = 0.03556 0.04192 ## ReduceConstraint 0 6 3 / 152 = 0.01974 0.00666 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 235 = 0.00426 0.13255 ## InsertSpecificFragment 0 16 11 / 634 = 0.01735 0.02276 ## InsertFragment 0 8 5 / 177 = 0.02825 0.01336 ## TwoFragment 0 0 0 / 157 = 0.00000 0.00000 ## CrossOver 4 16 5 / 144 = 0.03472 0.02879 ## CrossAndInsert 5 4 0 / 162 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 149 = 0.00000 0.00000 # generation 34: best score out of 20: T0287.try7-al6 226.31270 cost/residue, 220 clashes 0.14069 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 12 / 70 = 0.17143 0.01029 ## JiggleSubtree 0 4 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 33 = 0.03030 0.00111 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 2 / 11 = 0.18182 0.00000 ## TweakPhiSegment 3 33 6 / 46 = 0.13043 0.00807 ## TweakPsiSubtree 0 19 10 / 25 = 0.40000 0.00176 ## TweakPsiSegment 0 17 6 / 23 = 0.26087 0.00071 ## TweakPsiPhiSubtree 2 9 1 / 10 = 0.10000 0.00090 ## TweakPsiPhiSegment 0 35 10 / 45 = 0.22222 0.01021 ## TweakHbondSubtree 2 46 11 / 70 = 0.15714 0.01076 ## TweakHbondSegment 0 28 10 / 51 = 0.19608 0.01195 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 23 8 / 30 = 0.26667 0.00155 ## OneRotamer 0 31 11 / 80 = 0.13750 0.00942 ## ClashingRotamer 0 0 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 3 15 2 / 101 = 0.01980 0.00436 ## ReduceBreak 0 7 2 / 192 = 0.01042 0.01818 ## CloseGap 0 18 6 / 285 = 0.02105 0.05303 ## HealGap 0 35 0 / 144 = 0.00000 0.00000 ## MoveGap 0 10 8 / 231 = 0.03463 0.04083 ## ReduceConstraint 0 6 3 / 156 = 0.01923 0.00649 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 242 = 0.00413 0.12871 ## InsertSpecificFragment 0 16 11 / 646 = 0.01703 0.02234 ## InsertFragment 0 8 5 / 184 = 0.02717 0.01285 ## TwoFragment 0 0 0 / 159 = 0.00000 0.00000 ## CrossOver 4 16 5 / 150 = 0.03333 0.02764 ## CrossAndInsert 5 4 0 / 165 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 152 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 35: best score out of 20: T0287.try7-al6 226.25784 cost/residue, 220 clashes 0.14224 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 13 / 76 = 0.17105 0.00986 ## JiggleSubtree 0 4 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 34 = 0.02941 0.00108 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 2 / 12 = 0.16667 0.00000 ## TweakPhiSegment 3 35 8 / 49 = 0.16327 0.00760 ## TweakPsiSubtree 0 20 11 / 27 = 0.40741 0.00191 ## TweakPsiSegment 0 17 6 / 23 = 0.26087 0.00071 ## TweakPsiPhiSubtree 2 9 1 / 12 = 0.08333 0.00075 ## TweakPsiPhiSegment 0 35 10 / 47 = 0.21277 0.00977 ## TweakHbondSubtree 2 47 12 / 77 = 0.15584 0.01050 ## TweakHbondSegment 0 33 13 / 62 = 0.20968 0.01405 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 23 8 / 30 = 0.26667 0.00155 ## OneRotamer 0 31 11 / 81 = 0.13580 0.00930 ## ClashingRotamer 0 0 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 3 15 2 / 105 = 0.01905 0.00420 ## ReduceBreak 0 7 2 / 198 = 0.01010 0.01763 ## CloseGap 0 18 6 / 292 = 0.02055 0.05176 ## HealGap 0 35 0 / 145 = 0.00000 0.00000 ## MoveGap 0 10 8 / 237 = 0.03376 0.03979 ## ReduceConstraint 0 6 3 / 161 = 0.01863 0.00629 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 250 = 0.00400 0.12460 ## InsertSpecificFragment 0 16 11 / 664 = 0.01657 0.02173 ## InsertFragment 0 8 5 / 185 = 0.02703 0.01278 ## TwoFragment 0 0 0 / 160 = 0.00000 0.00000 ## CrossOver 4 16 5 / 152 = 0.03289 0.02728 ## CrossAndInsert 5 4 0 / 168 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 154 = 0.00000 0.00000 # generation 36: best score out of 20: T0287.try7-al6 226.02690 cost/residue, 217 clashes 0.14224 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 14 / 81 = 0.17284 0.01211 ## JiggleSubtree 0 4 0 / 13 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 36 = 0.02778 0.00102 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 2 / 13 = 0.15385 0.00000 ## TweakPhiSegment 3 35 8 / 49 = 0.16327 0.00760 ## TweakPsiSubtree 0 22 11 / 31 = 0.35484 0.00166 ## TweakPsiSegment 0 17 6 / 23 = 0.26087 0.00071 ## TweakPsiPhiSubtree 2 9 2 / 13 = 0.15385 0.00073 ## TweakPsiPhiSegment 1 38 10 / 52 = 0.19231 0.00883 ## TweakHbondSubtree 2 50 14 / 86 = 0.16279 0.01056 ## TweakHbondSegment 0 35 14 / 64 = 0.21875 0.01417 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 23 8 / 32 = 0.25000 0.00145 ## OneRotamer 0 32 11 / 83 = 0.13253 0.00908 ## ClashingRotamer 0 0 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 3 15 2 / 109 = 0.01835 0.00404 ## ReduceBreak 0 7 2 / 203 = 0.00985 0.01719 ## CloseGap 0 18 6 / 294 = 0.02041 0.05141 ## HealGap 0 35 0 / 151 = 0.00000 0.00000 ## MoveGap 0 10 8 / 239 = 0.03347 0.03946 ## ReduceConstraint 0 7 3 / 164 = 0.01829 0.00617 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 254 = 0.00394 0.12263 ## InsertSpecificFragment 0 16 11 / 679 = 0.01620 0.02125 ## InsertFragment 0 8 5 / 192 = 0.02604 0.01232 ## TwoFragment 0 0 0 / 163 = 0.00000 0.00000 ## CrossOver 4 16 5 / 158 = 0.03165 0.02624 ## CrossAndInsert 5 4 0 / 169 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 156 = 0.00000 0.00000 # generation 37: best score out of 20: T0287.try7-al6 225.80656 cost/residue, 209 clashes 0.14027 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 33 15 / 89 = 0.16854 0.01105 ## JiggleSubtree 0 4 0 / 13 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 37 = 0.02703 0.00099 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 2 / 13 = 0.15385 0.00000 ## TweakPhiSegment 3 36 8 / 50 = 0.16000 0.00745 ## TweakPsiSubtree 0 22 12 / 34 = 0.35294 0.00155 ## TweakPsiSegment 0 17 6 / 23 = 0.26087 0.00071 ## TweakPsiPhiSubtree 2 9 2 / 15 = 0.13333 0.00063 ## TweakPsiPhiSegment 1 39 11 / 56 = 0.19643 0.00881 ## TweakHbondSubtree 2 53 14 / 92 = 0.15217 0.00987 ## TweakHbondSegment 0 39 16 / 69 = 0.23188 0.02026 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 23 8 / 32 = 0.25000 0.00145 ## OneRotamer 0 32 11 / 85 = 0.12941 0.00887 ## ClashingRotamer 0 0 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 3 15 2 / 112 = 0.01786 0.00393 ## ReduceBreak 0 7 2 / 208 = 0.00962 0.01678 ## CloseGap 0 18 6 / 300 = 0.02000 0.05038 ## HealGap 0 35 0 / 153 = 0.00000 0.00000 ## MoveGap 0 10 8 / 244 = 0.03279 0.03865 ## ReduceConstraint 0 7 3 / 167 = 0.01796 0.00606 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 260 = 0.00385 0.11980 ## InsertSpecificFragment 0 16 11 / 699 = 0.01574 0.02065 ## InsertFragment 0 8 5 / 196 = 0.02551 0.01207 ## TwoFragment 0 0 0 / 163 = 0.00000 0.00000 ## CrossOver 4 16 5 / 162 = 0.03086 0.02559 ## CrossAndInsert 6 4 0 / 175 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 159 = 0.00000 0.00000 # generation 38: best score out of 20: T0287.try7-al6 225.80656 cost/residue, 209 clashes 0.14027 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 16 / 96 = 0.16667 0.01029 ## JiggleSubtree 0 4 0 / 15 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 39 = 0.02564 0.00094 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 2 / 13 = 0.15385 0.00000 ## TweakPhiSegment 3 36 8 / 52 = 0.15385 0.00716 ## TweakPsiSubtree 0 23 12 / 36 = 0.33333 0.00147 ## TweakPsiSegment 0 17 6 / 24 = 0.25000 0.00068 ## TweakPsiPhiSubtree 2 9 2 / 15 = 0.13333 0.00063 ## TweakPsiPhiSegment 1 40 11 / 57 = 0.19298 0.00866 ## TweakHbondSubtree 3 56 16 / 100 = 0.16000 0.01034 ## TweakHbondSegment 0 48 18 / 84 = 0.21429 0.01746 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 24 9 / 33 = 0.27273 0.00158 ## OneRotamer 0 32 11 / 85 = 0.12941 0.00887 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 3 15 2 / 113 = 0.01770 0.00390 ## ReduceBreak 0 7 2 / 212 = 0.00943 0.01646 ## CloseGap 0 18 6 / 305 = 0.01967 0.04956 ## HealGap 0 35 0 / 157 = 0.00000 0.00000 ## MoveGap 0 10 8 / 248 = 0.03226 0.03803 ## ReduceConstraint 0 7 3 / 168 = 0.01786 0.00603 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 263 = 0.00380 0.11844 ## InsertSpecificFragment 0 16 11 / 712 = 0.01545 0.02027 ## InsertFragment 0 8 5 / 202 = 0.02475 0.01171 ## TwoFragment 0 0 0 / 164 = 0.00000 0.00000 ## CrossOver 4 16 5 / 164 = 0.03049 0.02528 ## CrossAndInsert 6 4 0 / 181 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 163 = 0.00000 0.00000 # Closing gap before 116 without wiggling. # generation 39: best score out of 20: T0287.try7-al6 225.75780 cost/residue, 209 clashes 0.14183 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 16 / 99 = 0.16162 0.00998 ## JiggleSubtree 0 4 0 / 15 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 39 = 0.02564 0.00094 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 1 9 2 / 17 = 0.11765 0.00000 ## TweakPhiSegment 3 37 8 / 54 = 0.14815 0.00690 ## TweakPsiSubtree 0 25 14 / 39 = 0.35897 0.00206 ## TweakPsiSegment 0 18 7 / 25 = 0.28000 0.00065 ## TweakPsiPhiSubtree 2 9 2 / 15 = 0.13333 0.00063 ## TweakPsiPhiSegment 2 43 14 / 62 = 0.22581 0.00943 ## TweakHbondSubtree 3 59 16 / 103 = 0.15534 0.01004 ## TweakHbondSegment 0 49 18 / 93 = 0.19355 0.01577 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 25 9 / 35 = 0.25714 0.00149 ## OneRotamer 0 32 11 / 87 = 0.12644 0.00866 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 3 15 2 / 114 = 0.01754 0.00386 ## ReduceBreak 0 7 2 / 218 = 0.00917 0.01601 ## CloseGap 0 19 7 / 310 = 0.02258 0.04932 ## HealGap 0 35 0 / 164 = 0.00000 0.00000 ## MoveGap 0 10 8 / 257 = 0.03113 0.03670 ## ReduceConstraint 0 7 3 / 171 = 0.01754 0.00592 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 269 = 0.00372 0.11580 ## InsertSpecificFragment 0 16 11 / 727 = 0.01513 0.01985 ## InsertFragment 0 8 5 / 205 = 0.02439 0.01154 ## TwoFragment 0 0 0 / 166 = 0.00000 0.00000 ## CrossOver 4 16 5 / 170 = 0.02941 0.02439 ## CrossAndInsert 7 4 0 / 183 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 164 = 0.00000 0.00000 # Closing gap before 41 next to short segment # generation 40: best score out of 20: T0287.try7-al6 225.61119 cost/residue, 203 clashes 0.14155 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 17 / 103 = 0.16505 0.00959 ## JiggleSubtree 0 4 0 / 15 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 39 = 0.02564 0.00094 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 1 9 2 / 18 = 0.11111 0.00000 ## TweakPhiSegment 3 38 8 / 55 = 0.14545 0.00677 ## TweakPsiSubtree 0 26 14 / 41 = 0.34146 0.00196 ## TweakPsiSegment 0 18 7 / 25 = 0.28000 0.00065 ## TweakPsiPhiSubtree 3 9 3 / 16 = 0.18750 0.00162 ## TweakPsiPhiSegment 2 44 14 / 66 = 0.21212 0.00886 ## TweakHbondSubtree 3 61 18 / 107 = 0.16822 0.01015 ## TweakHbondSegment 0 55 22 / 105 = 0.20952 0.01643 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 25 9 / 36 = 0.25000 0.00145 ## OneRotamer 0 34 12 / 91 = 0.13187 0.00861 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 3 16 2 / 120 = 0.01667 0.00367 ## ReduceBreak 0 7 2 / 225 = 0.00889 0.01551 ## CloseGap 0 19 7 / 314 = 0.02229 0.04869 ## HealGap 0 35 0 / 168 = 0.00000 0.00000 ## MoveGap 0 10 8 / 265 = 0.03019 0.03559 ## ReduceConstraint 0 7 3 / 174 = 0.01724 0.00582 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 275 = 0.00364 0.11327 ## InsertSpecificFragment 0 16 11 / 739 = 0.01488 0.01953 ## InsertFragment 0 8 5 / 210 = 0.02381 0.01126 ## TwoFragment 0 0 0 / 169 = 0.00000 0.00000 ## CrossOver 4 16 5 / 173 = 0.02890 0.02397 ## CrossAndInsert 7 4 0 / 184 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 168 = 0.00000 0.00000 # generation 41: best score out of 20: T0287.try7-al6 225.59245 cost/residue, 205 clashes 0.14066 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 17 / 106 = 0.16038 0.00932 ## JiggleSubtree 0 4 0 / 15 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 39 = 0.02564 0.00094 ## OptSegment 0 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 1 9 2 / 18 = 0.11111 0.00000 ## TweakPhiSegment 3 40 8 / 58 = 0.13793 0.00642 ## TweakPsiSubtree 0 26 14 / 42 = 0.33333 0.00191 ## TweakPsiSegment 0 18 7 / 27 = 0.25926 0.00060 ## TweakPsiPhiSubtree 3 9 3 / 17 = 0.17647 0.00153 ## TweakPsiPhiSegment 2 46 15 / 71 = 0.21127 0.00833 ## TweakHbondSubtree 3 65 20 / 118 = 0.16949 0.00952 ## TweakHbondSegment 0 56 23 / 111 = 0.20721 0.01560 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 29 11 / 41 = 0.26829 0.00133 ## OneRotamer 0 36 13 / 94 = 0.13830 0.00981 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 3 16 2 / 123 = 0.01626 0.00358 ## ReduceBreak 0 7 2 / 226 = 0.00885 0.01544 ## CloseGap 0 19 7 / 320 = 0.02187 0.04778 ## HealGap 0 35 0 / 172 = 0.00000 0.00000 ## MoveGap 0 10 8 / 269 = 0.02974 0.03506 ## ReduceConstraint 0 7 3 / 176 = 0.01705 0.00575 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 279 = 0.00358 0.11165 ## InsertSpecificFragment 0 16 11 / 748 = 0.01471 0.01929 ## InsertFragment 0 8 5 / 218 = 0.02294 0.01085 ## TwoFragment 0 0 0 / 173 = 0.00000 0.00000 ## CrossOver 4 17 5 / 177 = 0.02825 0.02342 ## CrossAndInsert 7 4 0 / 187 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 172 = 0.00000 0.00000 # Closing gap before 99 without wiggling. # Closing gap before 62 next to short segment # generation 42: best score out of 20: T0287.try7-al6 225.30656 cost/residue, 205 clashes 0.14066 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 17 / 108 = 0.15741 0.00914 ## JiggleSubtree 0 4 0 / 15 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 39 = 0.02564 0.00094 ## OptSegment 0 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 1 10 2 / 19 = 0.10526 0.00000 ## TweakPhiSegment 3 41 8 / 59 = 0.13559 0.00631 ## TweakPsiSubtree 0 26 14 / 45 = 0.31111 0.00179 ## TweakPsiSegment 0 18 7 / 27 = 0.25926 0.00060 ## TweakPsiPhiSubtree 3 10 5 / 21 = 0.23810 0.00234 ## TweakPsiPhiSegment 2 50 17 / 77 = 0.22078 0.00968 ## TweakHbondSubtree 3 68 22 / 125 = 0.17600 0.00940 ## TweakHbondSegment 0 58 25 / 118 = 0.21186 0.01475 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 29 11 / 43 = 0.25581 0.00127 ## OneRotamer 0 37 14 / 99 = 0.14141 0.01220 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 3 16 2 / 125 = 0.01600 0.00352 ## ReduceBreak 0 7 2 / 228 = 0.00877 0.01531 ## CloseGap 0 20 8 / 329 = 0.02432 0.04654 ## HealGap 0 35 0 / 173 = 0.00000 0.00000 ## MoveGap 0 10 8 / 273 = 0.02930 0.03455 ## ReduceConstraint 0 7 3 / 181 = 0.01657 0.00559 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 286 = 0.00350 0.10891 ## InsertSpecificFragment 0 16 11 / 761 = 0.01445 0.01896 ## InsertFragment 0 8 5 / 220 = 0.02273 0.01075 ## TwoFragment 0 0 0 / 176 = 0.00000 0.00000 ## CrossOver 4 17 5 / 181 = 0.02762 0.02291 ## CrossAndInsert 7 4 0 / 191 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 176 = 0.00000 0.00000 # generation 43: best score out of 20: T0287.try7-al6 225.08006 cost/residue, 202 clashes 0.14066 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 19 / 116 = 0.16379 0.01060 ## JiggleSubtree 0 4 0 / 15 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 39 = 0.02564 0.00094 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 19 = 0.10526 0.00000 ## TweakPhiSegment 3 42 8 / 63 = 0.12698 0.00591 ## TweakPsiSubtree 0 26 14 / 45 = 0.31111 0.00179 ## TweakPsiSegment 0 18 7 / 28 = 0.25000 0.00058 ## TweakPsiPhiSubtree 3 12 6 / 24 = 0.25000 0.00348 ## TweakPsiPhiSegment 2 51 17 / 82 = 0.20732 0.00909 ## TweakHbondSubtree 3 69 23 / 131 = 0.17557 0.00947 ## TweakHbondSegment 0 61 29 / 129 = 0.22481 0.01373 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 29 12 / 44 = 0.27273 0.00124 ## OneRotamer 0 40 16 / 107 = 0.14953 0.01220 ## ClashingRotamer 0 0 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 3 17 2 / 129 = 0.01550 0.00342 ## ReduceBreak 0 7 2 / 231 = 0.00866 0.01511 ## CloseGap 0 20 8 / 332 = 0.02410 0.04612 ## HealGap 0 35 0 / 176 = 0.00000 0.00000 ## MoveGap 0 10 8 / 278 = 0.02878 0.03392 ## ReduceConstraint 0 7 3 / 185 = 0.01622 0.00547 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 289 = 0.00346 0.10778 ## InsertSpecificFragment 0 16 11 / 774 = 0.01421 0.01864 ## InsertFragment 0 8 5 / 223 = 0.02242 0.01060 ## TwoFragment 0 0 0 / 178 = 0.00000 0.00000 ## CrossOver 4 17 5 / 183 = 0.02732 0.02266 ## CrossAndInsert 7 4 0 / 195 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 178 = 0.00000 0.00000 # generation 44: best score out of 20: T0287.try7-al6 225.03818 cost/residue, 202 clashes 0.14082 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 44 22 / 125 = 0.17600 0.01037 ## JiggleSubtree 0 4 0 / 16 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 39 = 0.02564 0.00094 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 19 = 0.10526 0.00000 ## TweakPhiSegment 3 42 8 / 63 = 0.12698 0.00591 ## TweakPsiSubtree 0 27 14 / 48 = 0.29167 0.00167 ## TweakPsiSegment 0 18 7 / 28 = 0.25000 0.00058 ## TweakPsiPhiSubtree 4 12 6 / 26 = 0.23077 0.00321 ## TweakPsiPhiSegment 2 54 18 / 91 = 0.19780 0.00865 ## TweakHbondSubtree 3 71 25 / 138 = 0.18116 0.00984 ## TweakHbondSegment 0 64 30 / 135 = 0.22222 0.01331 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 29 12 / 45 = 0.26667 0.00122 ## OneRotamer 0 41 17 / 111 = 0.15315 0.01180 ## ClashingRotamer 0 0 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 3 17 2 / 130 = 0.01538 0.00339 ## ReduceBreak 0 7 2 / 233 = 0.00858 0.01498 ## CloseGap 0 20 8 / 338 = 0.02367 0.04530 ## HealGap 0 35 0 / 178 = 0.00000 0.00000 ## MoveGap 0 10 8 / 283 = 0.02827 0.03333 ## ReduceConstraint 0 7 3 / 187 = 0.01604 0.00542 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 293 = 0.00341 0.10631 ## InsertSpecificFragment 0 16 11 / 790 = 0.01392 0.01827 ## InsertFragment 0 8 5 / 227 = 0.02203 0.01042 ## TwoFragment 0 0 0 / 182 = 0.00000 0.00000 ## CrossOver 4 18 5 / 186 = 0.02688 0.02229 ## CrossAndInsert 7 4 0 / 201 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 179 = 0.00000 0.00000 # generation 45: best score out of 20: T0287.try7-al6 224.94521 cost/residue, 202 clashes 0.14066 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 45 22 / 129 = 0.17054 0.01005 ## JiggleSubtree 0 4 0 / 17 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 39 = 0.02564 0.00094 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 19 = 0.10526 0.00000 ## TweakPhiSegment 3 42 8 / 63 = 0.12698 0.00591 ## TweakPsiSubtree 0 28 14 / 51 = 0.27451 0.00158 ## TweakPsiSegment 0 18 8 / 29 = 0.27586 0.00062 ## TweakPsiPhiSubtree 4 12 6 / 27 = 0.22222 0.00309 ## TweakPsiPhiSegment 3 56 20 / 94 = 0.21277 0.00847 ## TweakHbondSubtree 3 72 26 / 143 = 0.18182 0.00989 ## TweakHbondSegment 0 69 32 / 142 = 0.22535 0.01323 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 29 13 / 46 = 0.28261 0.00121 ## OneRotamer 0 44 18 / 121 = 0.14876 0.01142 ## ClashingRotamer 0 1 1 / 37 = 0.02703 0.00740 ## ClusteredRotamer 3 17 2 / 131 = 0.01527 0.00336 ## ReduceBreak 0 7 2 / 237 = 0.00844 0.01473 ## CloseGap 0 20 8 / 344 = 0.02326 0.04451 ## HealGap 0 35 0 / 183 = 0.00000 0.00000 ## MoveGap 0 10 8 / 287 = 0.02787 0.03286 ## ReduceConstraint 0 7 3 / 191 = 0.01571 0.00530 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 295 = 0.00339 0.10559 ## InsertSpecificFragment 0 16 11 / 803 = 0.01370 0.01797 ## InsertFragment 0 8 5 / 232 = 0.02155 0.01019 ## TwoFragment 0 0 0 / 184 = 0.00000 0.00000 ## CrossOver 4 18 5 / 189 = 0.02646 0.02194 ## CrossAndInsert 7 4 0 / 204 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 185 = 0.00000 0.00000 # Closing gap before 41 next to short segment # generation 46: best score out of 20: T0287.try7-al6 224.65813 cost/residue, 200 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 24 / 135 = 0.17778 0.00997 ## JiggleSubtree 0 4 0 / 17 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 41 = 0.02439 0.00090 ## OptSegment 0 0 0 / 31 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 20 = 0.10000 0.00000 ## TweakPhiSegment 3 43 8 / 64 = 0.12500 0.00582 ## TweakPsiSubtree 0 29 15 / 52 = 0.28846 0.00160 ## TweakPsiSegment 0 19 9 / 31 = 0.29032 0.00060 ## TweakPsiPhiSubtree 4 14 7 / 29 = 0.24138 0.00342 ## TweakPsiPhiSegment 3 59 21 / 99 = 0.21212 0.00912 ## TweakHbondSubtree 3 72 26 / 146 = 0.17808 0.00969 ## TweakHbondSegment 0 69 32 / 142 = 0.22535 0.01323 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 29 13 / 46 = 0.28261 0.00121 ## OneRotamer 0 46 20 / 127 = 0.15748 0.01354 ## ClashingRotamer 0 1 1 / 54 = 0.01852 0.00507 ## ClusteredRotamer 3 17 2 / 131 = 0.01527 0.00336 ## ReduceBreak 0 7 2 / 241 = 0.00830 0.01448 ## CloseGap 0 20 8 / 349 = 0.02292 0.04387 ## HealGap 0 35 0 / 183 = 0.00000 0.00000 ## MoveGap 0 10 8 / 293 = 0.02730 0.03219 ## ReduceConstraint 0 7 3 / 193 = 0.01554 0.00525 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 298 = 0.00336 0.10453 ## InsertSpecificFragment 0 16 11 / 817 = 0.01346 0.01766 ## InsertFragment 0 8 5 / 234 = 0.02137 0.01011 ## TwoFragment 0 0 0 / 192 = 0.00000 0.00000 ## CrossOver 4 18 5 / 192 = 0.02604 0.02159 ## CrossAndInsert 8 4 0 / 206 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 188 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 47: best score out of 20: T0287.try7-al6 224.65056 cost/residue, 203 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 24 / 136 = 0.17647 0.00990 ## JiggleSubtree 0 4 0 / 17 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 42 = 0.02381 0.00087 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 43 8 / 64 = 0.12500 0.00582 ## TweakPsiSubtree 0 29 15 / 52 = 0.28846 0.00160 ## TweakPsiSegment 0 19 10 / 33 = 0.30303 0.00138 ## TweakPsiPhiSubtree 4 14 7 / 29 = 0.24138 0.00342 ## TweakPsiPhiSegment 4 63 22 / 106 = 0.20755 0.00853 ## TweakHbondSubtree 3 76 26 / 152 = 0.17105 0.00931 ## TweakHbondSegment 0 69 32 / 147 = 0.21769 0.01278 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 30 13 / 47 = 0.27660 0.00118 ## OneRotamer 0 49 23 / 139 = 0.16547 0.01320 ## ClashingRotamer 0 1 1 / 61 = 0.01639 0.00449 ## ClusteredRotamer 3 17 2 / 137 = 0.01460 0.00322 ## ReduceBreak 0 7 2 / 243 = 0.00823 0.01436 ## CloseGap 0 20 8 / 353 = 0.02266 0.04338 ## HealGap 0 35 0 / 185 = 0.00000 0.00000 ## MoveGap 0 10 8 / 297 = 0.02694 0.03175 ## ReduceConstraint 0 7 3 / 198 = 0.01515 0.00511 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 301 = 0.00332 0.10349 ## InsertSpecificFragment 0 16 11 / 829 = 0.01327 0.01741 ## InsertFragment 0 8 5 / 236 = 0.02119 0.01002 ## TwoFragment 0 0 0 / 196 = 0.00000 0.00000 ## CrossOver 4 18 5 / 192 = 0.02604 0.02159 ## CrossAndInsert 8 4 0 / 212 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 192 = 0.00000 0.00000 # generation 48: best score out of 20: T0287.try7-al6 224.44603 cost/residue, 194 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 24 / 142 = 0.16901 0.00948 ## JiggleSubtree 0 4 0 / 17 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 44 = 0.02273 0.00083 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 43 8 / 64 = 0.12500 0.00582 ## TweakPsiSubtree 0 29 15 / 52 = 0.28846 0.00160 ## TweakPsiSegment 0 20 10 / 34 = 0.29412 0.00133 ## TweakPsiPhiSubtree 4 15 7 / 31 = 0.22581 0.00320 ## TweakPsiPhiSegment 5 66 23 / 112 = 0.20536 0.00820 ## TweakHbondSubtree 3 80 26 / 159 = 0.16352 0.00890 ## TweakHbondSegment 0 71 33 / 160 = 0.20625 0.01187 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 31 14 / 48 = 0.29167 0.00117 ## OneRotamer 0 49 23 / 150 = 0.15333 0.01223 ## ClashingRotamer 0 1 1 / 65 = 0.01538 0.00421 ## ClusteredRotamer 3 18 3 / 138 = 0.02174 0.00472 ## ReduceBreak 0 7 2 / 247 = 0.00810 0.01413 ## CloseGap 0 20 8 / 359 = 0.02228 0.04265 ## HealGap 0 35 0 / 185 = 0.00000 0.00000 ## MoveGap 0 10 8 / 302 = 0.02649 0.03123 ## ReduceConstraint 0 7 3 / 203 = 0.01478 0.00499 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 308 = 0.00325 0.10113 ## InsertSpecificFragment 0 16 11 / 835 = 0.01317 0.01728 ## InsertFragment 0 8 5 / 236 = 0.02119 0.01002 ## TwoFragment 0 0 0 / 199 = 0.00000 0.00000 ## CrossOver 4 18 5 / 196 = 0.02551 0.02115 ## CrossAndInsert 8 4 0 / 215 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 194 = 0.00000 0.00000 # generation 49: best score out of 20: T0287.try7-al6 224.36638 cost/residue, 193 clashes 0.14100 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 25 / 146 = 0.17123 0.00923 ## JiggleSubtree 0 4 0 / 17 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 46 = 0.02174 0.00080 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 43 8 / 65 = 0.12308 0.00573 ## TweakPsiSubtree 0 29 15 / 52 = 0.28846 0.00160 ## TweakPsiSegment 0 21 10 / 37 = 0.27027 0.00123 ## TweakPsiPhiSubtree 4 17 7 / 34 = 0.20588 0.00292 ## TweakPsiPhiSegment 6 68 25 / 117 = 0.21368 0.00863 ## TweakHbondSubtree 3 82 27 / 166 = 0.16265 0.00870 ## TweakHbondSegment 0 74 35 / 170 = 0.20588 0.01136 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 33 14 / 51 = 0.27451 0.00110 ## OneRotamer 0 52 26 / 162 = 0.16049 0.01212 ## ClashingRotamer 0 1 1 / 71 = 0.01408 0.00386 ## ClusteredRotamer 4 18 3 / 147 = 0.02041 0.00443 ## ReduceBreak 0 7 2 / 249 = 0.00803 0.01402 ## CloseGap 0 20 8 / 361 = 0.02216 0.04242 ## HealGap 0 35 0 / 189 = 0.00000 0.00000 ## MoveGap 0 10 8 / 306 = 0.02614 0.03082 ## ReduceConstraint 0 7 3 / 205 = 0.01463 0.00494 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 310 = 0.00323 0.10048 ## InsertSpecificFragment 0 16 11 / 845 = 0.01302 0.01708 ## InsertFragment 0 8 5 / 240 = 0.02083 0.00985 ## TwoFragment 0 0 0 / 199 = 0.00000 0.00000 ## CrossOver 4 18 5 / 199 = 0.02513 0.02083 ## CrossAndInsert 8 4 0 / 216 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 194 = 0.00000 0.00000 # generation 50: best score out of 20: T0287.try7-al6 224.34520 cost/residue, 195 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 26 / 147 = 0.17687 0.00920 ## JiggleSubtree 0 4 0 / 18 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 47 = 0.02128 0.00078 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 43 8 / 65 = 0.12308 0.00573 ## TweakPsiSubtree 0 30 16 / 53 = 0.30189 0.00160 ## TweakPsiSegment 0 22 11 / 38 = 0.28947 0.00122 ## TweakPsiPhiSubtree 4 18 7 / 35 = 0.20000 0.00284 ## TweakPsiPhiSegment 6 72 26 / 121 = 0.21488 0.00846 ## TweakHbondSubtree 3 84 28 / 172 = 0.16279 0.00870 ## TweakHbondSegment 0 75 35 / 175 = 0.20000 0.01104 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 34 15 / 52 = 0.28846 0.00138 ## OneRotamer 0 55 27 / 175 = 0.15429 0.01180 ## ClashingRotamer 0 1 1 / 72 = 0.01389 0.00380 ## ClusteredRotamer 4 18 3 / 152 = 0.01974 0.00429 ## ReduceBreak 0 7 2 / 253 = 0.00791 0.01379 ## CloseGap 0 20 8 / 365 = 0.02192 0.04195 ## HealGap 0 35 1 / 196 = 0.00510 0.00000 ## MoveGap 0 10 8 / 308 = 0.02597 0.03062 ## ReduceConstraint 0 7 3 / 208 = 0.01442 0.00487 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 312 = 0.00321 0.09984 ## InsertSpecificFragment 0 16 11 / 856 = 0.01285 0.01686 ## InsertFragment 0 8 5 / 248 = 0.02016 0.00954 ## TwoFragment 0 0 0 / 201 = 0.00000 0.00000 ## CrossOver 4 18 5 / 205 = 0.02439 0.02022 ## CrossAndInsert 8 4 0 / 220 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 199 = 0.00000 0.00000 # generation 51: best score out of 20: T0287.try7-al6 224.32175 cost/residue, 195 clashes 0.14044 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 48 26 / 156 = 0.16667 0.00867 ## JiggleSubtree 0 4 0 / 18 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 47 = 0.02128 0.00078 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 43 8 / 65 = 0.12308 0.00573 ## TweakPsiSubtree 0 30 16 / 55 = 0.29091 0.00154 ## TweakPsiSegment 0 23 12 / 39 = 0.30769 0.00119 ## TweakPsiPhiSubtree 4 19 8 / 36 = 0.22222 0.00291 ## TweakPsiPhiSegment 6 79 27 / 132 = 0.20455 0.00793 ## TweakHbondSubtree 3 84 29 / 181 = 0.16022 0.00833 ## TweakHbondSegment 0 75 35 / 181 = 0.19337 0.01067 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 37 16 / 55 = 0.29091 0.00137 ## OneRotamer 0 55 27 / 181 = 0.14917 0.01141 ## ClashingRotamer 0 1 1 / 75 = 0.01333 0.00365 ## ClusteredRotamer 4 18 3 / 157 = 0.01911 0.00415 ## ReduceBreak 0 7 2 / 259 = 0.00772 0.01347 ## CloseGap 0 20 8 / 372 = 0.02151 0.04116 ## HealGap 0 35 1 / 197 = 0.00508 0.00000 ## MoveGap 0 10 8 / 312 = 0.02564 0.03023 ## ReduceConstraint 0 7 3 / 209 = 0.01435 0.00485 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 317 = 0.00315 0.09826 ## InsertSpecificFragment 0 16 11 / 865 = 0.01272 0.01668 ## InsertFragment 0 8 5 / 250 = 0.02000 0.00946 ## TwoFragment 0 0 0 / 204 = 0.00000 0.00000 ## CrossOver 4 18 5 / 206 = 0.02427 0.02013 ## CrossAndInsert 8 4 0 / 221 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 203 = 0.00000 0.00000 # generation 52: best score out of 20: T0287.try7-al6 224.13284 cost/residue, 194 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 49 27 / 163 = 0.16564 0.00831 ## JiggleSubtree 0 4 0 / 18 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 47 = 0.02128 0.00078 ## OptSegment 0 1 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 43 8 / 65 = 0.12308 0.00573 ## TweakPsiSubtree 0 30 16 / 58 = 0.27586 0.00146 ## TweakPsiSegment 0 23 13 / 43 = 0.30233 0.00144 ## TweakPsiPhiSubtree 4 22 11 / 44 = 0.25000 0.00366 ## TweakPsiPhiSegment 7 83 31 / 143 = 0.21678 0.00782 ## TweakHbondSubtree 3 86 30 / 185 = 0.16216 0.00827 ## TweakHbondSegment 0 76 38 / 187 = 0.20321 0.01103 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 37 16 / 56 = 0.28571 0.00134 ## OneRotamer 0 58 30 / 192 = 0.15625 0.01314 ## ClashingRotamer 0 1 1 / 76 = 0.01316 0.00360 ## ClusteredRotamer 4 18 3 / 158 = 0.01899 0.00413 ## ReduceBreak 0 7 2 / 263 = 0.00760 0.01327 ## CloseGap 0 20 8 / 374 = 0.02139 0.04094 ## HealGap 0 35 1 / 199 = 0.00503 0.00000 ## MoveGap 0 10 8 / 315 = 0.02540 0.02994 ## ReduceConstraint 0 7 3 / 214 = 0.01402 0.00473 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 319 = 0.00313 0.09765 ## InsertSpecificFragment 0 16 11 / 876 = 0.01256 0.01647 ## InsertFragment 0 8 5 / 253 = 0.01976 0.00935 ## TwoFragment 0 0 0 / 205 = 0.00000 0.00000 ## CrossOver 4 18 5 / 208 = 0.02404 0.01993 ## CrossAndInsert 8 4 0 / 224 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 207 = 0.00000 0.00000 # generation 53: best score out of 20: T0287.try7-al6 224.13284 cost/residue, 194 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 50 27 / 167 = 0.16168 0.00811 ## JiggleSubtree 0 4 0 / 19 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 47 = 0.02128 0.00078 ## OptSegment 0 1 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 43 8 / 66 = 0.12121 0.00564 ## TweakPsiSubtree 0 31 17 / 59 = 0.28814 0.00146 ## TweakPsiSegment 0 25 13 / 46 = 0.28261 0.00135 ## TweakPsiPhiSubtree 4 24 12 / 49 = 0.24490 0.00375 ## TweakPsiPhiSegment 7 84 33 / 149 = 0.22148 0.00778 ## TweakHbondSubtree 3 88 31 / 194 = 0.15979 0.00799 ## TweakHbondSegment 0 78 39 / 194 = 0.20103 0.01086 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 39 17 / 58 = 0.29310 0.00130 ## OneRotamer 0 59 30 / 201 = 0.14925 0.01255 ## ClashingRotamer 0 1 1 / 79 = 0.01266 0.00347 ## ClusteredRotamer 4 18 3 / 161 = 0.01863 0.00405 ## ReduceBreak 0 7 2 / 266 = 0.00752 0.01312 ## CloseGap 0 20 8 / 378 = 0.02116 0.04051 ## HealGap 0 35 1 / 202 = 0.00495 0.00000 ## MoveGap 0 10 8 / 318 = 0.02516 0.02966 ## ReduceConstraint 0 7 3 / 216 = 0.01389 0.00469 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 322 = 0.00311 0.09674 ## InsertSpecificFragment 0 16 11 / 888 = 0.01239 0.01625 ## InsertFragment 0 8 5 / 257 = 0.01946 0.00920 ## TwoFragment 0 0 0 / 207 = 0.00000 0.00000 ## CrossOver 4 18 5 / 210 = 0.02381 0.01974 ## CrossAndInsert 8 4 0 / 228 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 209 = 0.00000 0.00000 # generation 54: best score out of 20: T0287.try7-al6 224.06702 cost/residue, 194 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 51 28 / 170 = 0.16471 0.00835 ## JiggleSubtree 0 4 0 / 19 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 48 = 0.02083 0.00076 ## OptSegment 0 1 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 43 8 / 66 = 0.12121 0.00564 ## TweakPsiSubtree 0 31 17 / 61 = 0.27869 0.00141 ## TweakPsiSegment 0 26 14 / 49 = 0.28571 0.00135 ## TweakPsiPhiSubtree 4 24 12 / 51 = 0.23529 0.00360 ## TweakPsiPhiSegment 7 88 36 / 154 = 0.23377 0.00793 ## TweakHbondSubtree 4 92 34 / 202 = 0.16832 0.00807 ## TweakHbondSegment 0 80 40 / 205 = 0.19512 0.01060 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 39 18 / 61 = 0.29508 0.00130 ## OneRotamer 0 62 32 / 216 = 0.14815 0.01198 ## ClashingRotamer 0 1 1 / 82 = 0.01220 0.00334 ## ClusteredRotamer 4 18 3 / 164 = 0.01829 0.00397 ## ReduceBreak 0 7 2 / 268 = 0.00746 0.01302 ## CloseGap 0 20 8 / 381 = 0.02100 0.04019 ## HealGap 0 35 1 / 206 = 0.00485 0.00000 ## MoveGap 0 10 8 / 325 = 0.02462 0.02902 ## ReduceConstraint 0 7 3 / 220 = 0.01364 0.00460 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 323 = 0.00310 0.09644 ## InsertSpecificFragment 0 16 11 / 897 = 0.01226 0.01609 ## InsertFragment 0 8 5 / 260 = 0.01923 0.00910 ## TwoFragment 0 0 0 / 209 = 0.00000 0.00000 ## CrossOver 4 18 5 / 210 = 0.02381 0.01974 ## CrossAndInsert 8 4 0 / 232 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 210 = 0.00000 0.00000 # generation 55: best score out of 20: T0287.try7-al6 223.93640 cost/residue, 193 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 54 31 / 175 = 0.17714 0.00886 ## JiggleSubtree 0 4 0 / 19 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 49 = 0.02041 0.00075 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 44 9 / 67 = 0.13433 0.00620 ## TweakPsiSubtree 0 31 17 / 62 = 0.27419 0.00139 ## TweakPsiSegment 0 27 14 / 53 = 0.26415 0.00125 ## TweakPsiPhiSubtree 4 25 12 / 55 = 0.21818 0.00334 ## TweakPsiPhiSegment 10 90 38 / 159 = 0.23899 0.00797 ## TweakHbondSubtree 5 92 34 / 203 = 0.16749 0.00803 ## TweakHbondSegment 0 81 41 / 211 = 0.19431 0.01052 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 39 18 / 61 = 0.29508 0.00130 ## OneRotamer 0 64 33 / 229 = 0.14410 0.01187 ## ClashingRotamer 0 1 1 / 84 = 0.01190 0.00326 ## ClusteredRotamer 4 19 3 / 169 = 0.01775 0.00386 ## ReduceBreak 0 7 2 / 268 = 0.00746 0.01302 ## CloseGap 0 20 8 / 387 = 0.02067 0.03957 ## HealGap 0 35 1 / 207 = 0.00483 0.00000 ## MoveGap 0 10 8 / 331 = 0.02417 0.02849 ## ReduceConstraint 0 7 3 / 225 = 0.01333 0.00450 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 332 = 0.00301 0.09382 ## InsertSpecificFragment 0 16 11 / 909 = 0.01210 0.01588 ## InsertFragment 0 8 5 / 262 = 0.01908 0.00903 ## TwoFragment 0 0 0 / 211 = 0.00000 0.00000 ## CrossOver 4 18 5 / 212 = 0.02358 0.01956 ## CrossAndInsert 9 4 0 / 234 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 213 = 0.00000 0.00000 # generation 56: best score out of 20: T0287.try7-al6 223.92099 cost/residue, 193 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 57 34 / 184 = 0.18478 0.00903 ## JiggleSubtree 0 4 0 / 19 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 49 = 0.02041 0.00075 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 46 10 / 74 = 0.13514 0.00562 ## TweakPsiSubtree 0 31 17 / 62 = 0.27419 0.00139 ## TweakPsiSegment 0 28 15 / 55 = 0.27273 0.00123 ## TweakPsiPhiSubtree 4 27 13 / 62 = 0.20968 0.00314 ## TweakPsiPhiSegment 10 91 41 / 163 = 0.25153 0.00804 ## TweakHbondSubtree 5 94 35 / 207 = 0.16908 0.00792 ## TweakHbondSegment 0 83 42 / 215 = 0.19535 0.01041 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 40 19 / 64 = 0.29688 0.00148 ## OneRotamer 0 65 33 / 238 = 0.13866 0.01142 ## ClashingRotamer 0 1 1 / 87 = 0.01149 0.00315 ## ClusteredRotamer 4 19 3 / 175 = 0.01714 0.00372 ## ReduceBreak 0 7 2 / 271 = 0.00738 0.01288 ## CloseGap 0 20 8 / 389 = 0.02057 0.03936 ## HealGap 0 35 1 / 208 = 0.00481 0.00000 ## MoveGap 0 10 8 / 333 = 0.02402 0.02832 ## ReduceConstraint 0 7 3 / 227 = 0.01322 0.00446 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 336 = 0.00298 0.09271 ## InsertSpecificFragment 0 16 11 / 918 = 0.01198 0.01572 ## InsertFragment 0 8 5 / 266 = 0.01880 0.00889 ## TwoFragment 0 0 0 / 216 = 0.00000 0.00000 ## CrossOver 4 18 5 / 215 = 0.02326 0.01928 ## CrossAndInsert 9 4 0 / 236 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 218 = 0.00000 0.00000 # generation 57: best score out of 20: T0287.try7-al6 223.91862 cost/residue, 193 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 59 37 / 191 = 0.19372 0.00883 ## JiggleSubtree 0 4 0 / 19 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 49 = 0.02041 0.00075 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 50 11 / 84 = 0.13095 0.00500 ## TweakPsiSubtree 0 31 17 / 62 = 0.27419 0.00139 ## TweakPsiSegment 0 29 15 / 57 = 0.26316 0.00119 ## TweakPsiPhiSubtree 4 28 14 / 67 = 0.20896 0.00311 ## TweakPsiPhiSegment 13 94 42 / 173 = 0.24277 0.00766 ## TweakHbondSubtree 6 94 35 / 210 = 0.16667 0.00781 ## TweakHbondSegment 0 84 42 / 218 = 0.19266 0.01027 ## TweakMultimer 35 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 41 20 / 67 = 0.29851 0.00150 ## OneRotamer 0 65 33 / 248 = 0.13306 0.01096 ## ClashingRotamer 0 1 1 / 90 = 0.01111 0.00304 ## ClusteredRotamer 4 19 3 / 178 = 0.01685 0.00366 ## ReduceBreak 0 7 2 / 274 = 0.00730 0.01274 ## CloseGap 0 20 8 / 395 = 0.02025 0.03877 ## HealGap 0 35 1 / 208 = 0.00481 0.00000 ## MoveGap 0 10 8 / 334 = 0.02395 0.02824 ## ReduceConstraint 0 7 3 / 231 = 0.01299 0.00438 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 339 = 0.00295 0.09189 ## InsertSpecificFragment 0 16 11 / 931 = 0.01182 0.01550 ## InsertFragment 0 8 5 / 269 = 0.01859 0.00879 ## TwoFragment 0 0 0 / 218 = 0.00000 0.00000 ## CrossOver 4 18 5 / 216 = 0.02315 0.01919 ## CrossAndInsert 9 4 0 / 240 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 219 = 0.00000 0.00000 # generation 58: best score out of 20: T0287.try7-al6 223.88831 cost/residue, 193 clashes 0.14039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 62 39 / 200 = 0.19500 0.00859 ## JiggleSubtree 0 4 0 / 20 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 49 = 0.02041 0.00075 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 52 11 / 88 = 0.12500 0.00477 ## TweakPsiSubtree 0 33 19 / 66 = 0.28788 0.00133 ## TweakPsiSegment 0 29 15 / 60 = 0.25000 0.00113 ## TweakPsiPhiSubtree 4 32 17 / 74 = 0.22973 0.00335 ## TweakPsiPhiSegment 14 95 43 / 182 = 0.23626 0.00750 ## TweakHbondSubtree 6 94 35 / 216 = 0.16204 0.00759 ## TweakHbondSegment 0 84 43 / 222 = 0.19369 0.01012 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 41 22 / 71 = 0.30986 0.00145 ## OneRotamer 0 65 34 / 254 = 0.13386 0.01070 ## ClashingRotamer 0 1 1 / 95 = 0.01053 0.00288 ## ClusteredRotamer 4 19 3 / 181 = 0.01657 0.00360 ## ReduceBreak 0 7 2 / 275 = 0.00727 0.01269 ## CloseGap 0 20 8 / 400 = 0.02000 0.03828 ## HealGap 0 35 1 / 211 = 0.00474 0.00000 ## MoveGap 0 10 8 / 337 = 0.02374 0.02799 ## ReduceConstraint 0 7 3 / 236 = 0.01271 0.00429 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 340 = 0.00294 0.09161 ## InsertSpecificFragment 0 16 11 / 940 = 0.01170 0.01535 ## InsertFragment 0 8 5 / 273 = 0.01832 0.00866 ## TwoFragment 0 0 0 / 220 = 0.00000 0.00000 ## CrossOver 4 18 5 / 217 = 0.02304 0.01911 ## CrossAndInsert 10 4 0 / 241 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 219 = 0.00000 0.00000 # Closing gap before 95 # generation 59: best score out of 20: T0287.try7-al6 223.79782 cost/residue, 192 clashes 0.14102 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 62 39 / 207 = 0.18841 0.00830 ## JiggleSubtree 0 4 0 / 20 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 19 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 50 = 0.02000 0.00073 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 21 = 0.09524 0.00000 ## TweakPhiSegment 3 52 11 / 89 = 0.12360 0.00472 ## TweakPsiSubtree 0 33 19 / 67 = 0.28358 0.00131 ## TweakPsiSegment 0 31 16 / 63 = 0.25397 0.00108 ## TweakPsiPhiSubtree 4 33 18 / 79 = 0.22785 0.00362 ## TweakPsiPhiSegment 14 98 45 / 190 = 0.23684 0.00771 ## TweakHbondSubtree 6 95 35 / 228 = 0.15351 0.00719 ## TweakHbondSegment 0 85 43 / 225 = 0.19111 0.00998 ## TweakMultimer 39 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 42 22 / 74 = 0.29730 0.00140 ## OneRotamer 0 67 35 / 266 = 0.13158 0.01029 ## ClashingRotamer 0 1 1 / 96 = 0.01042 0.00285 ## ClusteredRotamer 4 19 3 / 186 = 0.01613 0.00350 ## ReduceBreak 0 7 2 / 279 = 0.00717 0.01251 ## CloseGap 0 20 8 / 401 = 0.01995 0.03819 ## HealGap 0 35 1 / 214 = 0.00467 0.00000 ## MoveGap 0 10 8 / 343 = 0.02332 0.02750 ## ReduceConstraint 0 7 3 / 238 = 0.01261 0.00425 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 340 = 0.00294 0.09161 ## InsertSpecificFragment 0 16 11 / 951 = 0.01157 0.01517 ## InsertFragment 0 8 5 / 275 = 0.01818 0.00860 ## TwoFragment 0 0 0 / 222 = 0.00000 0.00000 ## CrossOver 5 19 5 / 219 = 0.02283 0.01893 ## CrossAndInsert 11 4 0 / 243 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 220 = 0.00000 0.00000 # generation 60: best score out of 20: T0287.try7-al6 223.79782 cost/residue, 192 clashes 0.14102 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 66 43 / 215 = 0.20000 0.00828 ## JiggleSubtree 0 4 0 / 20 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 19 = 0.00000 0.00000 ## OptSubtree 0 0 1 / 50 = 0.02000 0.00073 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 2 / 22 = 0.09091 0.00000 ## TweakPhiSegment 3 54 11 / 96 = 0.11458 0.00437 ## TweakPsiSubtree 0 33 19 / 68 = 0.27941 0.00129 ## TweakPsiSegment 0 33 17 / 66 = 0.25758 0.00104 ## TweakPsiPhiSubtree 4 34 18 / 81 = 0.22222 0.00353 ## TweakPsiPhiSegment 14 101 47 / 198 = 0.23737 0.00749 ## TweakHbondSubtree 6 96 35 / 233 = 0.15021 0.00704 ## TweakHbondSegment 0 86 43 / 233 = 0.18455 0.00964 ## TweakMultimer 41 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 42 22 / 75 = 0.29333 0.00138 ## OneRotamer 0 69 35 / 273 = 0.12821 0.01003 ## ClashingRotamer 0 1 1 / 101 = 0.00990 0.00271 ## ClusteredRotamer 4 19 3 / 186 = 0.01613 0.00350 ## ReduceBreak 0 7 2 / 283 = 0.00707 0.01233 ## CloseGap 0 20 8 / 403 = 0.01985 0.03800 ## HealGap 0 35 1 / 218 = 0.00459 0.00000 ## MoveGap 0 10 8 / 345 = 0.02319 0.02734 ## ReduceConstraint 0 7 3 / 240 = 0.01250 0.00422 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 342 = 0.00292 0.09108 ## InsertSpecificFragment 0 16 11 / 962 = 0.01143 0.01500 ## InsertFragment 0 8 5 / 281 = 0.01779 0.00842 ## TwoFragment 0 0 0 / 223 = 0.00000 0.00000 ## CrossOver 5 20 5 / 224 = 0.02232 0.01851 ## CrossAndInsert 11 4 0 / 244 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 222 = 0.00000 0.00000 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1883299839.pdb -s /var/tmp/to_scwrl_1883299839.seq -o /var/tmp/from_scwrl_1883299839.pdb > /var/tmp/scwrl_1883299839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1883299839.pdb # T0287.try7-al6-scwrl 226.07060 cost/residue 212 clashes 0.14101 breaks # iteration 2 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try7-al6 at pool[5] 238.89780 cost/residue, 226 clashes 0.26386 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # generation 1: best score out of 20: T0287.try7-al5 235.75989 cost/residue, 233 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 1 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 1 / 2 = 0.50000 0.06754 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 0 0 / 0 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 0 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ReduceBreak 1 1 1 / 8 = 0.12500 0.00504 ## CloseGap 2 3 2 / 5 = 0.40000 1.25541 ## HealGap 0 0 0 / 4 = 0.00000 0.00000 ## MoveGap 0 2 0 / 7 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 10 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 1 / 28 = 0.03571 2.53252 ## InsertFragment 0 1 1 / 6 = 0.16667 0.05232 ## TwoFragment 0 0 0 / 6 = 0.00000 0.00000 ## CrossOver 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 4 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 9 = 0.00000 0.00000 # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # generation 2: best score out of 20: T0287.try7-al4 235.62480 cost/residue, 232 clashes 0.14221 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 1 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 1 / 3 = 0.33333 0.04502 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 1 = 1.00000 0.00049 ## OneRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 5 = 0.00000 0.00000 ## ReduceBreak 1 1 1 / 13 = 0.07692 0.00310 ## CloseGap 2 6 5 / 13 = 0.38462 1.22305 ## HealGap 0 1 0 / 9 = 0.00000 0.00000 ## MoveGap 0 2 0 / 12 = 0.00000 0.00000 ## ReduceConstraint 0 1 1 / 16 = 0.06250 0.00733 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 3 / 54 = 0.05556 1.37705 ## InsertFragment 0 2 1 / 12 = 0.08333 0.02616 ## TwoFragment 0 0 0 / 11 = 0.00000 0.00000 ## CrossOver 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 13 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 18 = 0.00000 0.00000 # generation 3: best score out of 20: T0287.try7-al4 235.62480 cost/residue, 232 clashes 0.14221 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 1 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 1 = 1.00000 0.07100 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 1 / 3 = 0.33333 0.04502 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 2 = 0.50000 0.00024 ## OneRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 9 = 0.00000 0.00000 ## ReduceBreak 2 1 1 / 20 = 0.05000 0.00202 ## CloseGap 2 9 5 / 23 = 0.21739 0.69129 ## HealGap 0 6 0 / 17 = 0.00000 0.00000 ## MoveGap 0 2 0 / 21 = 0.00000 0.00000 ## ReduceConstraint 0 1 1 / 17 = 0.05882 0.00690 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 3 / 82 = 0.03659 0.90684 ## InsertFragment 0 2 1 / 17 = 0.05882 0.01847 ## TwoFragment 0 0 0 / 20 = 0.00000 0.00000 ## CrossOver 1 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 20 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 20 = 0.00000 0.00000 # Closing gap before 50 # generation 4: best score out of 20: T0287.try7-al5 235.55006 cost/residue, 242 clashes 0.14322 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 1 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 2 1 / 2 = 0.50000 0.03550 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 4 1 / 4 = 0.25000 0.03377 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 3 = 0.33333 0.00016 ## OneRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 10 = 0.00000 0.00000 ## ReduceBreak 2 1 1 / 26 = 0.03846 0.00155 ## CloseGap 2 10 5 / 31 = 0.16129 0.51289 ## HealGap 0 8 0 / 24 = 0.00000 0.00000 ## MoveGap 0 3 1 / 26 = 0.03846 0.01153 ## ReduceConstraint 0 2 1 / 19 = 0.05263 0.00617 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 3 / 110 = 0.02727 0.67601 ## InsertFragment 0 3 1 / 26 = 0.03846 0.01207 ## TwoFragment 0 0 0 / 21 = 0.00000 0.00000 ## CrossOver 1 0 0 / 11 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 28 = 0.00000 0.00000 # generation 5: best score out of 20: T0287.try7-al4 234.91516 cost/residue, 225 clashes 0.12809 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 1 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 2 1 / 2 = 0.50000 0.03550 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.00001 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 4 1 / 4 = 0.25000 0.03377 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 3 = 0.33333 0.00016 ## OneRotamer 0 2 0 / 4 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 11 = 0.00000 0.00000 ## ReduceBreak 2 2 2 / 29 = 0.06897 0.04634 ## CloseGap 2 13 5 / 40 = 0.12500 0.39749 ## HealGap 0 9 0 / 30 = 0.00000 0.00000 ## MoveGap 0 4 2 / 31 = 0.06452 0.02755 ## ReduceConstraint 0 2 1 / 23 = 0.04348 0.00510 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 3 / 139 = 0.02158 0.53497 ## InsertFragment 0 3 1 / 32 = 0.03125 0.00981 ## TwoFragment 0 0 0 / 24 = 0.00000 0.00000 ## CrossOver 1 2 2 / 16 = 0.12500 0.00618 ## CrossAndInsert 1 1 0 / 39 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 29 = 0.00000 0.00000 # generation 6: best score out of 20: T0287.try7-al4 234.77657 cost/residue, 227 clashes 0.12787 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 1 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 3 = 0.33333 0.02367 ## TweakPsiSubtree 0 3 2 / 3 = 0.66667 0.04620 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 4 1 / 4 = 0.25000 0.03377 ## TweakPsiPhiSegment 0 1 1 / 2 = 0.50000 0.01180 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 3 = 0.33333 0.00016 ## OneRotamer 0 2 0 / 4 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 13 = 0.00000 0.00000 ## ReduceBreak 2 3 2 / 36 = 0.05556 0.03733 ## CloseGap 2 14 5 / 49 = 0.10204 0.32448 ## HealGap 0 14 0 / 39 = 0.00000 0.00000 ## MoveGap 0 4 2 / 35 = 0.05714 0.02440 ## ReduceConstraint 0 2 1 / 31 = 0.03226 0.00378 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 3 / 168 = 0.01786 0.44262 ## InsertFragment 0 3 1 / 34 = 0.02941 0.00923 ## TwoFragment 0 0 0 / 25 = 0.00000 0.00000 ## CrossOver 1 3 2 / 18 = 0.11111 0.00549 ## CrossAndInsert 1 1 0 / 48 = 0.00000 0.00000 ## ReduceClash 0 3 0 / 36 = 0.00000 0.00000 # generation 7: best score out of 20: T0287.try7-al4 233.44043 cost/residue, 232 clashes 0.14095 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 1 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 4 = 0.25000 0.01775 ## TweakPsiSubtree 0 5 4 / 5 = 0.80000 0.06054 ## TweakPsiSegment 0 2 1 / 3 = 0.33333 0.00056 ## TweakPsiPhiSubtree 0 5 2 / 5 = 0.40000 0.03795 ## TweakPsiPhiSegment 0 1 1 / 2 = 0.50000 0.01180 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 3 = 0.33333 0.00016 ## OneRotamer 0 2 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 8 0 / 16 = 0.00000 0.00000 ## ReduceBreak 2 4 3 / 43 = 0.06977 0.03561 ## CloseGap 2 14 5 / 56 = 0.08929 0.28392 ## HealGap 0 16 0 / 44 = 0.00000 0.00000 ## MoveGap 0 4 2 / 38 = 0.05263 0.02247 ## ReduceConstraint 0 2 2 / 39 = 0.05128 0.00429 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 5 / 196 = 0.02551 0.39259 ## InsertFragment 0 4 2 / 38 = 0.05263 0.01353 ## TwoFragment 0 0 0 / 27 = 0.00000 0.00000 ## CrossOver 1 3 2 / 23 = 0.08696 0.00430 ## CrossAndInsert 2 1 0 / 55 = 0.00000 0.00000 ## ReduceClash 0 3 0 / 45 = 0.00000 0.00000 # generation 8: best score out of 20: T0287.try7-al4 233.44043 cost/residue, 232 clashes 0.14095 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 1 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 4 1 / 5 = 0.20000 0.01420 ## TweakPsiSubtree 0 8 4 / 8 = 0.50000 0.03784 ## TweakPsiSegment 0 3 1 / 4 = 0.25000 0.00042 ## TweakPsiPhiSubtree 0 5 2 / 5 = 0.40000 0.03795 ## TweakPsiPhiSegment 0 1 1 / 2 = 0.50000 0.01180 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 4 = 0.25000 0.00012 ## OneRotamer 0 2 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 8 0 / 20 = 0.00000 0.00000 ## ReduceBreak 2 4 3 / 47 = 0.06383 0.03258 ## CloseGap 2 14 5 / 66 = 0.07576 0.24090 ## HealGap 0 18 0 / 52 = 0.00000 0.00000 ## MoveGap 0 5 2 / 45 = 0.04444 0.01898 ## ReduceConstraint 0 2 2 / 44 = 0.04545 0.00381 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 5 / 226 = 0.02212 0.34048 ## InsertFragment 0 4 2 / 42 = 0.04762 0.01224 ## TwoFragment 0 0 0 / 30 = 0.00000 0.00000 ## CrossOver 1 4 3 / 28 = 0.10714 0.01405 ## CrossAndInsert 2 1 0 / 60 = 0.00000 0.00000 ## ReduceClash 0 3 0 / 49 = 0.00000 0.00000 # Closing gap before 68 without wiggling. # generation 9: best score out of 20: T0287.try7-al4 232.17500 cost/residue, 217 clashes 0.14095 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 1 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 4 1 / 5 = 0.20000 0.01420 ## TweakPsiSubtree 0 9 4 / 9 = 0.44444 0.03363 ## TweakPsiSegment 0 3 1 / 4 = 0.25000 0.00042 ## TweakPsiPhiSubtree 0 5 2 / 7 = 0.28571 0.02711 ## TweakPsiPhiSegment 0 1 1 / 2 = 0.50000 0.01180 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 4 = 0.25000 0.00012 ## OneRotamer 0 2 0 / 6 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 8 0 / 20 = 0.00000 0.00000 ## ReduceBreak 2 5 3 / 53 = 0.05660 0.02889 ## CloseGap 2 15 6 / 79 = 0.07595 0.20160 ## HealGap 0 22 0 / 58 = 0.00000 0.00000 ## MoveGap 0 5 2 / 49 = 0.04082 0.01743 ## ReduceConstraint 0 3 2 / 54 = 0.03704 0.00310 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 7 / 248 = 0.02823 0.31936 ## InsertFragment 0 4 2 / 50 = 0.04000 0.01028 ## TwoFragment 0 0 0 / 39 = 0.00000 0.00000 ## CrossOver 1 4 3 / 31 = 0.09677 0.01269 ## CrossAndInsert 3 1 0 / 68 = 0.00000 0.00000 ## ReduceClash 0 3 0 / 50 = 0.00000 0.00000 # generation 10: best score out of 20: T0287.try7-al4 232.17500 cost/residue, 217 clashes 0.14095 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 1 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 4 1 / 5 = 0.20000 0.01420 ## TweakPsiSubtree 0 11 4 / 11 = 0.36364 0.02752 ## TweakPsiSegment 0 3 1 / 4 = 0.25000 0.00042 ## TweakPsiPhiSubtree 1 6 3 / 8 = 0.37500 0.05012 ## TweakPsiPhiSegment 0 2 1 / 3 = 0.33333 0.00787 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 4 = 0.25000 0.00012 ## OneRotamer 0 3 0 / 7 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 0 8 0 / 22 = 0.00000 0.00000 ## ReduceBreak 2 5 3 / 57 = 0.05263 0.02687 ## CloseGap 2 15 6 / 91 = 0.06593 0.17502 ## HealGap 0 24 0 / 61 = 0.00000 0.00000 ## MoveGap 0 5 2 / 59 = 0.03390 0.01447 ## ReduceConstraint 0 3 2 / 59 = 0.03390 0.00284 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 270 = 0.02963 0.29732 ## InsertFragment 0 4 2 / 56 = 0.03571 0.00918 ## TwoFragment 0 1 1 / 45 = 0.02222 0.03070 ## CrossOver 2 4 3 / 35 = 0.08571 0.01124 ## CrossAndInsert 3 2 1 / 74 = 0.01351 0.00037 ## ReduceClash 0 3 0 / 59 = 0.00000 0.00000 # generation 11: best score out of 20: T0287.try7-al4 232.17500 cost/residue, 217 clashes 0.14095 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 1 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 4 1 / 5 = 0.20000 0.01420 ## TweakPsiSubtree 0 12 4 / 12 = 0.33333 0.02522 ## TweakPsiSegment 0 3 1 / 4 = 0.25000 0.00042 ## TweakPsiPhiSubtree 1 9 3 / 12 = 0.25000 0.03341 ## TweakPsiPhiSegment 0 2 1 / 3 = 0.33333 0.00787 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 4 = 0.25000 0.00012 ## OneRotamer 0 3 0 / 7 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 0 9 0 / 23 = 0.00000 0.00000 ## ReduceBreak 2 6 4 / 60 = 0.06667 0.02555 ## CloseGap 2 16 6 / 101 = 0.05941 0.15769 ## HealGap 0 27 0 / 65 = 0.00000 0.00000 ## MoveGap 0 6 2 / 66 = 0.03030 0.01294 ## ReduceConstraint 0 3 2 / 63 = 0.03175 0.00266 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 8 / 301 = 0.02658 0.26670 ## InsertFragment 0 4 2 / 63 = 0.03175 0.00816 ## TwoFragment 0 1 1 / 54 = 0.01852 0.02559 ## CrossOver 2 5 3 / 38 = 0.07895 0.01035 ## CrossAndInsert 3 2 1 / 79 = 0.01266 0.00034 ## ReduceClash 0 3 0 / 62 = 0.00000 0.00000 # generation 12: best score out of 20: T0287.try7-al4 231.58250 cost/residue, 220 clashes 0.14095 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 1 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 5 1 / 6 = 0.16667 0.01183 ## TweakPsiSubtree 0 15 6 / 15 = 0.40000 0.02196 ## TweakPsiSegment 0 3 1 / 6 = 0.16667 0.00028 ## TweakPsiPhiSubtree 1 12 3 / 17 = 0.17647 0.02358 ## TweakPsiPhiSegment 0 3 1 / 4 = 0.25000 0.00590 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 4 = 0.25000 0.00012 ## OneRotamer 0 3 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 0 3 1 / 16 = 0.06250 0.00896 ## ClusteredRotamer 0 9 0 / 23 = 0.00000 0.00000 ## ReduceBreak 2 6 4 / 66 = 0.06061 0.02323 ## CloseGap 2 16 6 / 109 = 0.05505 0.14611 ## HealGap 0 27 0 / 68 = 0.00000 0.00000 ## MoveGap 0 6 2 / 72 = 0.02778 0.01186 ## ReduceConstraint 0 3 2 / 66 = 0.03030 0.00254 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 10 / 330 = 0.03030 0.24747 ## InsertFragment 0 4 2 / 66 = 0.03030 0.00779 ## TwoFragment 0 1 1 / 62 = 0.01613 0.02228 ## CrossOver 2 5 3 / 41 = 0.07317 0.00959 ## CrossAndInsert 3 2 1 / 81 = 0.01235 0.00033 ## ReduceClash 0 3 0 / 66 = 0.00000 0.00000 # Closing gap before 50 without wiggling. # generation 13: best score out of 20: T0287.try7-al4 231.02103 cost/residue, 222 clashes 0.13895 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 1 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 6 1 / 7 = 0.14286 0.01014 ## TweakPsiSubtree 0 15 6 / 15 = 0.40000 0.02196 ## TweakPsiSegment 0 3 1 / 6 = 0.16667 0.00028 ## TweakPsiPhiSubtree 1 13 3 / 18 = 0.16667 0.02227 ## TweakPsiPhiSegment 0 3 1 / 4 = 0.25000 0.00590 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 5 = 0.00000 0.00000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 2 / 5 = 0.40000 0.00034 ## OneRotamer 0 3 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 0 3 1 / 16 = 0.06250 0.00896 ## ClusteredRotamer 0 9 0 / 26 = 0.00000 0.00000 ## ReduceBreak 2 8 5 / 75 = 0.06667 0.02050 ## CloseGap 2 17 7 / 118 = 0.05932 0.13822 ## HealGap 0 27 0 / 71 = 0.00000 0.00000 ## MoveGap 0 6 2 / 77 = 0.02597 0.01109 ## ReduceConstraint 0 3 2 / 68 = 0.02941 0.00246 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 14 / 365 = 0.03836 0.23307 ## InsertFragment 0 4 2 / 71 = 0.02817 0.00724 ## TwoFragment 0 1 1 / 70 = 0.01429 0.01974 ## CrossOver 2 6 3 / 47 = 0.06383 0.00837 ## CrossAndInsert 3 2 1 / 82 = 0.01220 0.00033 ## ReduceClash 0 3 0 / 72 = 0.00000 0.00000 # generation 14: best score out of 20: T0287.try7-al4 230.86244 cost/residue, 233 clashes 0.14426 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 1 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 6 1 / 7 = 0.14286 0.01014 ## TweakPsiSubtree 0 17 6 / 17 = 0.35294 0.01938 ## TweakPsiSegment 0 4 1 / 7 = 0.14286 0.00024 ## TweakPsiPhiSubtree 1 15 3 / 20 = 0.15000 0.02005 ## TweakPsiPhiSegment 0 5 2 / 6 = 0.33333 0.00427 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 5 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 2 / 6 = 0.33333 0.00028 ## OneRotamer 0 3 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 0 3 1 / 18 = 0.05556 0.00796 ## ClusteredRotamer 0 9 0 / 26 = 0.00000 0.00000 ## ReduceBreak 2 8 5 / 78 = 0.06410 0.01971 ## CloseGap 2 17 7 / 127 = 0.05512 0.12843 ## HealGap 0 28 0 / 75 = 0.00000 0.00000 ## MoveGap 0 6 2 / 84 = 0.02381 0.01017 ## ReduceConstraint 0 4 2 / 73 = 0.02740 0.00229 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 18 14 / 402 = 0.03483 0.21162 ## InsertFragment 0 4 2 / 73 = 0.02740 0.00704 ## TwoFragment 0 1 1 / 76 = 0.01316 0.01818 ## CrossOver 2 7 4 / 51 = 0.07843 0.02613 ## CrossAndInsert 3 2 1 / 86 = 0.01163 0.00032 ## ReduceClash 0 3 0 / 78 = 0.00000 0.00000 # generation 15: best score out of 20: T0287.try7-al4 230.58188 cost/residue, 220 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 1 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 6 1 / 7 = 0.14286 0.01014 ## TweakPsiSubtree 0 17 6 / 17 = 0.35294 0.01938 ## TweakPsiSegment 0 5 1 / 8 = 0.12500 0.00021 ## TweakPsiPhiSubtree 1 16 3 / 21 = 0.14286 0.01909 ## TweakPsiPhiSegment 0 7 2 / 8 = 0.25000 0.00320 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 5 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 3 / 8 = 0.37500 0.00236 ## OneRotamer 0 3 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 0 3 1 / 21 = 0.04762 0.00683 ## ClusteredRotamer 0 9 0 / 27 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 83 = 0.06024 0.01853 ## CloseGap 2 17 7 / 140 = 0.05000 0.11650 ## HealGap 0 32 0 / 83 = 0.00000 0.00000 ## MoveGap 0 6 2 / 90 = 0.02222 0.00949 ## ReduceConstraint 0 4 2 / 76 = 0.02632 0.00220 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 18 14 / 423 = 0.03310 0.20112 ## InsertFragment 0 4 2 / 81 = 0.02469 0.00635 ## TwoFragment 0 1 1 / 81 = 0.01235 0.01706 ## CrossOver 2 8 5 / 55 = 0.09091 0.03344 ## CrossAndInsert 3 2 1 / 91 = 0.01099 0.00030 ## ReduceClash 0 4 0 / 84 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 16: best score out of 20: T0287.try7-al4 230.58188 cost/residue, 220 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 1 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 6 1 / 8 = 0.12500 0.00887 ## TweakPsiSubtree 0 18 6 / 18 = 0.33333 0.01830 ## TweakPsiSegment 0 5 1 / 8 = 0.12500 0.00021 ## TweakPsiPhiSubtree 1 19 3 / 24 = 0.12500 0.01671 ## TweakPsiPhiSegment 0 7 2 / 8 = 0.25000 0.00320 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 6 = 0.00000 0.00000 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 3 / 9 = 0.33333 0.00210 ## OneRotamer 0 4 1 / 11 = 0.09091 0.00475 ## ClashingRotamer 0 3 1 / 22 = 0.04545 0.00651 ## ClusteredRotamer 0 9 0 / 28 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 91 = 0.05495 0.01690 ## CloseGap 2 17 7 / 148 = 0.04730 0.11021 ## HealGap 0 34 0 / 90 = 0.00000 0.00000 ## MoveGap 0 6 2 / 94 = 0.02128 0.00908 ## ReduceConstraint 0 5 2 / 80 = 0.02500 0.00209 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 14 / 447 = 0.03132 0.19032 ## InsertFragment 0 4 2 / 83 = 0.02410 0.00619 ## TwoFragment 0 1 1 / 85 = 0.01176 0.01625 ## CrossOver 2 10 6 / 65 = 0.09231 0.02994 ## CrossAndInsert 3 2 1 / 94 = 0.01064 0.00029 ## ReduceClash 0 4 0 / 92 = 0.00000 0.00000 # Closing gap before 41 next to short segment # generation 17: best score out of 20: T0287.try7-al4 230.57587 cost/residue, 220 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 1 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 7 1 / 9 = 0.11111 0.00789 ## TweakPsiSubtree 0 19 6 / 19 = 0.31579 0.01734 ## TweakPsiSegment 0 6 2 / 10 = 0.20000 0.00018 ## TweakPsiPhiSubtree 1 20 3 / 25 = 0.12000 0.01604 ## TweakPsiPhiSegment 0 8 3 / 9 = 0.33333 0.01203 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 4 / 10 = 0.40000 0.00275 ## OneRotamer 0 6 1 / 14 = 0.07143 0.00373 ## ClashingRotamer 0 3 1 / 27 = 0.03704 0.00531 ## ClusteredRotamer 0 9 0 / 29 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 93 = 0.05376 0.01653 ## CloseGap 2 17 7 / 154 = 0.04545 0.10591 ## HealGap 0 36 0 / 95 = 0.00000 0.00000 ## MoveGap 0 6 2 / 100 = 0.02000 0.00854 ## ReduceConstraint 0 5 2 / 83 = 0.02410 0.00202 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 14 / 472 = 0.02966 0.18024 ## InsertFragment 0 4 2 / 86 = 0.02326 0.00598 ## TwoFragment 0 1 1 / 89 = 0.01124 0.01552 ## CrossOver 3 12 6 / 78 = 0.07692 0.02495 ## CrossAndInsert 3 2 1 / 103 = 0.00971 0.00026 ## ReduceClash 0 4 0 / 95 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 18: best score out of 20: T0287.try7-al4 230.50194 cost/residue, 223 clashes 0.13895 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 1 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 7 1 / 9 = 0.11111 0.00789 ## TweakPsiSubtree 0 21 7 / 21 = 0.33333 0.01574 ## TweakPsiSegment 0 6 2 / 10 = 0.20000 0.00018 ## TweakPsiPhiSubtree 2 22 3 / 27 = 0.11111 0.01485 ## TweakPsiPhiSegment 0 10 3 / 13 = 0.23077 0.00833 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 11 = 0.36364 0.00250 ## OneRotamer 0 6 1 / 15 = 0.06667 0.00348 ## ClashingRotamer 0 3 1 / 30 = 0.03333 0.00478 ## ClusteredRotamer 0 10 0 / 32 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 98 = 0.05102 0.01569 ## CloseGap 2 17 7 / 161 = 0.04348 0.10131 ## HealGap 0 36 0 / 100 = 0.00000 0.00000 ## MoveGap 0 6 2 / 104 = 0.01923 0.00821 ## ReduceConstraint 0 5 2 / 83 = 0.02410 0.00202 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 14 / 501 = 0.02794 0.16980 ## InsertFragment 0 4 2 / 93 = 0.02151 0.00553 ## TwoFragment 0 1 1 / 92 = 0.01087 0.01502 ## CrossOver 3 13 7 / 86 = 0.08140 0.02358 ## CrossAndInsert 3 3 1 / 109 = 0.00917 0.00025 ## ReduceClash 0 4 0 / 101 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 19: best score out of 20: T0287.try7-al4 230.15266 cost/residue, 221 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 1 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 9 1 / 12 = 0.08333 0.00592 ## TweakPsiSubtree 0 24 7 / 24 = 0.29167 0.01377 ## TweakPsiSegment 0 6 2 / 10 = 0.20000 0.00018 ## TweakPsiPhiSubtree 2 24 4 / 30 = 0.13333 0.01426 ## TweakPsiPhiSegment 0 11 3 / 14 = 0.21429 0.00773 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 13 = 0.30769 0.00212 ## OneRotamer 0 7 2 / 16 = 0.12500 0.00677 ## ClashingRotamer 0 3 1 / 33 = 0.03030 0.00434 ## ClusteredRotamer 0 10 0 / 32 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 104 = 0.04808 0.01478 ## CloseGap 2 17 7 / 171 = 0.04094 0.09538 ## HealGap 0 37 0 / 108 = 0.00000 0.00000 ## MoveGap 0 6 2 / 107 = 0.01869 0.00798 ## ReduceConstraint 0 5 2 / 87 = 0.02299 0.00192 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 14 / 520 = 0.02692 0.16360 ## InsertFragment 0 4 2 / 98 = 0.02041 0.00524 ## TwoFragment 0 1 1 / 100 = 0.01000 0.01382 ## CrossOver 3 15 8 / 92 = 0.08696 0.02664 ## CrossAndInsert 4 3 1 / 112 = 0.00893 0.00024 ## ReduceClash 0 4 0 / 107 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 20: best score out of 20: T0287.try7-al4 230.15250 cost/residue, 221 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 1 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 9 1 / 12 = 0.08333 0.00592 ## TweakPsiSubtree 0 26 8 / 26 = 0.30769 0.01272 ## TweakPsiSegment 0 6 2 / 10 = 0.20000 0.00018 ## TweakPsiPhiSubtree 2 25 4 / 31 = 0.12903 0.01380 ## TweakPsiPhiSegment 0 13 4 / 16 = 0.25000 0.00807 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 13 = 0.30769 0.00212 ## OneRotamer 0 8 2 / 18 = 0.11111 0.00601 ## ClashingRotamer 0 4 1 / 35 = 0.02857 0.00410 ## ClusteredRotamer 0 10 0 / 34 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 112 = 0.04464 0.01373 ## CloseGap 2 17 7 / 183 = 0.03825 0.08913 ## HealGap 0 42 0 / 114 = 0.00000 0.00000 ## MoveGap 0 6 2 / 111 = 0.01802 0.00769 ## ReduceConstraint 0 5 2 / 92 = 0.02174 0.00182 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 14 / 540 = 0.02593 0.15754 ## InsertFragment 0 4 2 / 103 = 0.01942 0.00499 ## TwoFragment 0 1 1 / 109 = 0.00917 0.01268 ## CrossOver 4 15 8 / 101 = 0.07921 0.02427 ## CrossAndInsert 4 3 1 / 115 = 0.00870 0.00024 ## ReduceClash 0 4 0 / 110 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 21: best score out of 20: T0287.try7-al4 230.14677 cost/residue, 221 clashes 0.14539 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 5 = 0.20000 0.00118 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 1 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 9 1 / 12 = 0.08333 0.00592 ## TweakPsiSubtree 0 26 8 / 26 = 0.30769 0.01272 ## TweakPsiSegment 0 6 2 / 10 = 0.20000 0.00018 ## TweakPsiPhiSubtree 2 27 4 / 33 = 0.12121 0.01297 ## TweakPsiPhiSegment 0 14 4 / 17 = 0.23529 0.00760 ## TweakHbondSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 13 = 0.30769 0.00212 ## OneRotamer 0 11 2 / 22 = 0.09091 0.00492 ## ClashingRotamer 0 4 1 / 35 = 0.02857 0.00410 ## ClusteredRotamer 0 10 0 / 36 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 117 = 0.04274 0.01314 ## CloseGap 2 17 7 / 192 = 0.03646 0.08495 ## HealGap 0 47 0 / 123 = 0.00000 0.00000 ## MoveGap 0 6 2 / 114 = 0.01754 0.00749 ## ReduceConstraint 0 5 2 / 100 = 0.02000 0.00167 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 14 / 562 = 0.02491 0.15137 ## InsertFragment 0 4 2 / 106 = 0.01887 0.00485 ## TwoFragment 0 1 1 / 122 = 0.00820 0.01132 ## CrossOver 4 15 8 / 106 = 0.07547 0.02312 ## CrossAndInsert 4 3 1 / 117 = 0.00855 0.00023 ## ReduceClash 0 4 0 / 116 = 0.00000 0.00000 # Closing gap before 42 next to short segment # generation 22: best score out of 20: T0287.try7-al4 229.24094 cost/residue, 211 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 8 = 0.12500 0.00074 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 1 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 9 1 / 12 = 0.08333 0.00592 ## TweakPsiSubtree 0 29 10 / 30 = 0.33333 0.01482 ## TweakPsiSegment 0 6 2 / 11 = 0.18182 0.00016 ## TweakPsiPhiSubtree 2 27 4 / 35 = 0.11429 0.01223 ## TweakPsiPhiSegment 0 16 4 / 20 = 0.20000 0.00646 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 14 = 0.28571 0.00197 ## OneRotamer 0 12 3 / 24 = 0.12500 0.04250 ## ClashingRotamer 0 4 1 / 36 = 0.02778 0.00398 ## ClusteredRotamer 0 10 0 / 39 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 122 = 0.04098 0.01260 ## CloseGap 2 18 8 / 199 = 0.04020 0.08369 ## HealGap 0 48 1 / 124 = 0.00806 0.00005 ## MoveGap 0 6 2 / 119 = 0.01681 0.00718 ## ReduceConstraint 0 5 2 / 103 = 0.01942 0.00163 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 588 = 0.02381 0.14468 ## InsertFragment 0 4 2 / 111 = 0.01802 0.00463 ## TwoFragment 0 1 1 / 128 = 0.00781 0.01079 ## CrossOver 5 16 9 / 117 = 0.07692 0.02292 ## CrossAndInsert 4 3 1 / 119 = 0.00840 0.00023 ## ReduceClash 0 4 0 / 119 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 23: best score out of 20: T0287.try7-al4 229.24094 cost/residue, 211 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 9 = 0.11111 0.00065 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 1 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 9 1 / 12 = 0.08333 0.00592 ## TweakPsiSubtree 0 31 11 / 34 = 0.32353 0.01603 ## TweakPsiSegment 0 6 2 / 11 = 0.18182 0.00016 ## TweakPsiPhiSubtree 2 27 5 / 36 = 0.13889 0.01237 ## TweakPsiPhiSegment 0 18 5 / 22 = 0.22727 0.01010 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 5 / 15 = 0.33333 0.00236 ## OneRotamer 0 17 4 / 35 = 0.11429 0.03744 ## ClashingRotamer 0 4 1 / 39 = 0.02564 0.00368 ## ClusteredRotamer 0 10 0 / 39 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 128 = 0.03906 0.01201 ## CloseGap 2 18 8 / 205 = 0.03902 0.08124 ## HealGap 0 49 1 / 126 = 0.00794 0.00005 ## MoveGap 0 6 2 / 125 = 0.01600 0.00683 ## ReduceConstraint 0 5 2 / 106 = 0.01887 0.00158 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 619 = 0.02262 0.13743 ## InsertFragment 0 4 2 / 116 = 0.01724 0.00443 ## TwoFragment 0 1 1 / 131 = 0.00763 0.01055 ## CrossOver 5 16 9 / 121 = 0.07438 0.02216 ## CrossAndInsert 4 3 1 / 123 = 0.00813 0.00022 ## ReduceClash 0 4 0 / 121 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 24: best score out of 20: T0287.try7-al4 229.24094 cost/residue, 211 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 11 = 0.09091 0.00054 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 1 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 9 1 / 13 = 0.07692 0.00546 ## TweakPsiSubtree 0 34 12 / 38 = 0.31579 0.01453 ## TweakPsiSegment 0 6 2 / 11 = 0.18182 0.00016 ## TweakPsiPhiSubtree 2 27 5 / 36 = 0.13889 0.01237 ## TweakPsiPhiSegment 0 18 5 / 23 = 0.21739 0.00966 ## TweakHbondSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 6 / 19 = 0.31579 0.00198 ## OneRotamer 0 21 8 / 43 = 0.18605 0.03808 ## ClashingRotamer 0 4 1 / 42 = 0.02381 0.00341 ## ClusteredRotamer 0 10 0 / 40 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 137 = 0.03650 0.01122 ## CloseGap 2 18 8 / 211 = 0.03791 0.07893 ## HealGap 0 49 1 / 129 = 0.00775 0.00005 ## MoveGap 0 6 2 / 128 = 0.01562 0.00667 ## ReduceConstraint 0 5 2 / 112 = 0.01786 0.00150 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 639 = 0.02191 0.13313 ## InsertFragment 0 4 2 / 118 = 0.01695 0.00436 ## TwoFragment 0 1 1 / 135 = 0.00741 0.01023 ## CrossOver 7 17 10 / 131 = 0.07634 0.02078 ## CrossAndInsert 4 3 1 / 127 = 0.00787 0.00021 ## ReduceClash 0 4 0 / 127 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 25: best score out of 20: T0287.try7-al4 229.20627 cost/residue, 210 clashes 0.14534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 1 / 12 = 0.08333 0.00049 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 1 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 9 1 / 13 = 0.07692 0.00546 ## TweakPsiSubtree 0 37 13 / 42 = 0.30952 0.01321 ## TweakPsiSegment 0 6 2 / 11 = 0.18182 0.00016 ## TweakPsiPhiSubtree 2 28 5 / 37 = 0.13514 0.01203 ## TweakPsiPhiSegment 0 18 6 / 25 = 0.24000 0.00933 ## TweakHbondSubtree 0 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 8 = 0.00000 0.00000 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 6 / 19 = 0.31579 0.00198 ## OneRotamer 0 24 11 / 53 = 0.20755 0.04115 ## ClashingRotamer 0 4 1 / 45 = 0.02222 0.00319 ## ClusteredRotamer 0 11 0 / 43 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 142 = 0.03521 0.01083 ## CloseGap 2 18 8 / 217 = 0.03687 0.07675 ## HealGap 0 50 2 / 134 = 0.01493 0.00009 ## MoveGap 0 6 2 / 135 = 0.01481 0.00633 ## ReduceConstraint 0 5 2 / 113 = 0.01770 0.00148 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 665 = 0.02105 0.12793 ## InsertFragment 0 4 2 / 123 = 0.01626 0.00418 ## TwoFragment 0 1 1 / 139 = 0.00719 0.00994 ## CrossOver 7 17 10 / 139 = 0.07194 0.01958 ## CrossAndInsert 4 3 1 / 128 = 0.00781 0.00021 ## ReduceClash 0 4 0 / 129 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 42 next to short segment # Closing gap before 41 next to short segment # generation 26: best score out of 20: T0287.try7-al4 228.89662 cost/residue, 209 clashes 0.13707 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 1 / 12 = 0.08333 0.00049 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 1 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 11 1 / 15 = 0.06667 0.00473 ## TweakPsiSubtree 0 40 13 / 45 = 0.28889 0.01233 ## TweakPsiSegment 0 6 2 / 11 = 0.18182 0.00016 ## TweakPsiPhiSubtree 2 28 5 / 38 = 0.13158 0.01172 ## TweakPsiPhiSegment 0 19 7 / 26 = 0.26923 0.00911 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 6 / 21 = 0.28571 0.00179 ## OneRotamer 0 27 13 / 61 = 0.21311 0.04101 ## ClashingRotamer 0 4 1 / 46 = 0.02174 0.00312 ## ClusteredRotamer 0 11 0 / 46 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 150 = 0.03333 0.01025 ## CloseGap 2 19 9 / 226 = 0.03982 0.07522 ## HealGap 0 51 3 / 143 = 0.02098 0.00012 ## MoveGap 0 6 2 / 137 = 0.01460 0.00623 ## ReduceConstraint 0 5 2 / 114 = 0.01754 0.00147 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 689 = 0.02032 0.12347 ## InsertFragment 0 4 2 / 126 = 0.01587 0.00408 ## TwoFragment 0 1 1 / 145 = 0.00690 0.00953 ## CrossOver 7 17 10 / 148 = 0.06757 0.01839 ## CrossAndInsert 5 3 1 / 132 = 0.00758 0.00021 ## ReduceClash 0 4 0 / 129 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 27: best score out of 20: T0287.try7-al4 228.46877 cost/residue, 230 clashes 0.14473 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 1 / 12 = 0.08333 0.00049 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 1 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 11 1 / 15 = 0.06667 0.00473 ## TweakPsiSubtree 0 40 13 / 46 = 0.28261 0.01206 ## TweakPsiSegment 0 6 2 / 12 = 0.16667 0.00015 ## TweakPsiPhiSubtree 2 28 5 / 38 = 0.13158 0.01172 ## TweakPsiPhiSegment 0 21 7 / 28 = 0.25000 0.00846 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 16 8 / 23 = 0.34783 0.00285 ## OneRotamer 0 31 13 / 69 = 0.18841 0.03626 ## ClashingRotamer 0 4 1 / 46 = 0.02174 0.00312 ## ClusteredRotamer 0 11 0 / 49 = 0.00000 0.00000 ## ReduceBreak 2 9 5 / 154 = 0.03247 0.00998 ## CloseGap 2 19 9 / 243 = 0.03704 0.06996 ## HealGap 0 53 3 / 149 = 0.02013 0.00012 ## MoveGap 0 6 2 / 142 = 0.01408 0.00601 ## ReduceConstraint 0 6 2 / 119 = 0.01681 0.00141 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 710 = 0.01972 0.11982 ## InsertFragment 0 4 2 / 129 = 0.01550 0.00398 ## TwoFragment 0 1 1 / 152 = 0.00658 0.00909 ## CrossOver 7 18 11 / 154 = 0.07143 0.02276 ## CrossAndInsert 5 3 1 / 135 = 0.00741 0.00020 ## ReduceClash 0 4 0 / 131 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 28: best score out of 20: T0287.try7-al4 228.43951 cost/residue, 230 clashes 0.14502 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 1 / 12 = 0.08333 0.00049 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 11 1 / 16 = 0.06250 0.00444 ## TweakPsiSubtree 0 44 15 / 52 = 0.28846 0.01128 ## TweakPsiSegment 0 6 2 / 12 = 0.16667 0.00015 ## TweakPsiPhiSubtree 2 28 5 / 38 = 0.13158 0.01172 ## TweakPsiPhiSegment 0 22 7 / 29 = 0.24138 0.00817 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 17 8 / 24 = 0.33333 0.00273 ## OneRotamer 0 34 13 / 79 = 0.16456 0.03167 ## ClashingRotamer 0 4 1 / 46 = 0.02174 0.00312 ## ClusteredRotamer 0 11 0 / 49 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 158 = 0.03165 0.00973 ## CloseGap 2 19 9 / 258 = 0.03488 0.06589 ## HealGap 0 55 3 / 154 = 0.01948 0.00011 ## MoveGap 0 6 2 / 145 = 0.01379 0.00589 ## ReduceConstraint 0 6 2 / 123 = 0.01626 0.00136 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 734 = 0.01907 0.11590 ## InsertFragment 0 4 2 / 133 = 0.01504 0.00386 ## TwoFragment 0 1 1 / 158 = 0.00633 0.00874 ## CrossOver 8 18 11 / 160 = 0.06875 0.02191 ## CrossAndInsert 5 3 1 / 138 = 0.00725 0.00020 ## ReduceClash 0 4 0 / 134 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 29: best score out of 20: T0287.try7-al4 228.35820 cost/residue, 228 clashes 0.14473 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 1 / 12 = 0.08333 0.00049 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 11 1 / 16 = 0.06250 0.00444 ## TweakPsiSubtree 0 45 15 / 53 = 0.28302 0.01107 ## TweakPsiSegment 0 6 2 / 12 = 0.16667 0.00015 ## TweakPsiPhiSubtree 2 30 5 / 41 = 0.12195 0.01086 ## TweakPsiPhiSegment 0 24 8 / 31 = 0.25806 0.00779 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 17 8 / 26 = 0.30769 0.00252 ## OneRotamer 0 39 15 / 91 = 0.16484 0.03288 ## ClashingRotamer 0 4 1 / 46 = 0.02174 0.00312 ## ClusteredRotamer 0 12 0 / 50 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 161 = 0.03106 0.00955 ## CloseGap 2 19 9 / 267 = 0.03371 0.06367 ## HealGap 0 55 3 / 155 = 0.01935 0.00011 ## MoveGap 0 6 2 / 152 = 0.01316 0.00562 ## ReduceConstraint 0 6 2 / 125 = 0.01600 0.00134 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 765 = 0.01830 0.11121 ## InsertFragment 0 4 2 / 136 = 0.01471 0.00378 ## TwoFragment 0 1 1 / 163 = 0.00613 0.00848 ## CrossOver 8 19 12 / 170 = 0.07059 0.02105 ## CrossAndInsert 5 3 1 / 142 = 0.00704 0.00019 ## ReduceClash 0 4 0 / 138 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 30: best score out of 20: T0287.try7-al4 228.33022 cost/residue, 229 clashes 0.14553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 14 = 0.21429 0.00146 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 1 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 11 1 / 16 = 0.06250 0.00444 ## TweakPsiSubtree 0 47 15 / 55 = 0.27273 0.01066 ## TweakPsiSegment 0 6 2 / 12 = 0.16667 0.00015 ## TweakPsiPhiSubtree 2 31 5 / 42 = 0.11905 0.01060 ## TweakPsiPhiSegment 0 26 9 / 33 = 0.27273 0.00817 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 18 8 / 27 = 0.29630 0.00243 ## OneRotamer 0 41 17 / 100 = 0.17000 0.03041 ## ClashingRotamer 0 4 1 / 47 = 0.02128 0.00305 ## ClusteredRotamer 0 12 0 / 51 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 172 = 0.02907 0.00894 ## CloseGap 2 19 9 / 277 = 0.03249 0.06137 ## HealGap 0 55 3 / 159 = 0.01887 0.00011 ## MoveGap 0 6 2 / 157 = 0.01274 0.00544 ## ReduceConstraint 0 6 2 / 125 = 0.01600 0.00134 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 790 = 0.01772 0.10769 ## InsertFragment 0 4 2 / 143 = 0.01399 0.00359 ## TwoFragment 0 1 1 / 163 = 0.00613 0.00848 ## CrossOver 8 21 12 / 175 = 0.06857 0.02045 ## CrossAndInsert 5 3 1 / 147 = 0.00680 0.00018 ## ReduceClash 0 4 0 / 142 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 31: best score out of 20: T0287.try7-al4 228.33022 cost/residue, 229 clashes 0.14553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 15 = 0.20000 0.00136 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 1 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 0 12 2 / 17 = 0.11765 0.00418 ## TweakPsiSubtree 0 49 16 / 57 = 0.28070 0.01032 ## TweakPsiSegment 0 6 2 / 12 = 0.16667 0.00015 ## TweakPsiPhiSubtree 3 34 6 / 45 = 0.13333 0.01051 ## TweakPsiPhiSegment 0 28 9 / 36 = 0.25000 0.00748 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 18 8 / 28 = 0.28571 0.00234 ## OneRotamer 0 43 17 / 106 = 0.16038 0.02868 ## ClashingRotamer 0 4 1 / 47 = 0.02128 0.00305 ## ClusteredRotamer 0 12 0 / 52 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 176 = 0.02841 0.00874 ## CloseGap 2 19 9 / 286 = 0.03147 0.05944 ## HealGap 0 55 3 / 167 = 0.01796 0.00011 ## MoveGap 0 6 2 / 158 = 0.01266 0.00540 ## ReduceConstraint 0 6 2 / 126 = 0.01587 0.00133 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 813 = 0.01722 0.10464 ## InsertFragment 0 4 2 / 146 = 0.01370 0.00352 ## TwoFragment 0 1 1 / 172 = 0.00581 0.00803 ## CrossOver 8 22 12 / 186 = 0.06452 0.01924 ## CrossAndInsert 6 3 1 / 151 = 0.00662 0.00018 ## ReduceClash 0 4 0 / 146 = 0.00000 0.00000 # Closing gap before 42 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 32: best score out of 20: T0287.try7-al4 228.07379 cost/residue, 225 clashes 0.14473 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 20 = 0.15000 0.00102 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 1 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 0 12 2 / 17 = 0.11765 0.00418 ## TweakPsiSubtree 0 50 17 / 58 = 0.29310 0.01051 ## TweakPsiSegment 0 6 2 / 12 = 0.16667 0.00015 ## TweakPsiPhiSubtree 3 36 7 / 48 = 0.14583 0.01037 ## TweakPsiPhiSegment 0 30 10 / 38 = 0.26316 0.00828 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 18 8 / 30 = 0.26667 0.00219 ## OneRotamer 0 48 20 / 119 = 0.16807 0.02863 ## ClashingRotamer 0 4 1 / 48 = 0.02083 0.00299 ## ClusteredRotamer 1 12 0 / 53 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 181 = 0.02762 0.00850 ## CloseGap 2 20 10 / 293 = 0.03413 0.05898 ## HealGap 0 56 3 / 172 = 0.01744 0.00010 ## MoveGap 0 6 2 / 162 = 0.01235 0.00527 ## ReduceConstraint 0 6 2 / 131 = 0.01527 0.00128 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 835 = 0.01677 0.10188 ## InsertFragment 0 4 2 / 148 = 0.01351 0.00347 ## TwoFragment 0 1 1 / 177 = 0.00565 0.00781 ## CrossOver 8 22 12 / 192 = 0.06250 0.01864 ## CrossAndInsert 6 3 1 / 153 = 0.00654 0.00018 ## ReduceClash 0 4 0 / 151 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 33: best score out of 20: T0287.try7-al4 228.03120 cost/residue, 223 clashes 0.14466 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 22 = 0.13636 0.00093 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 1 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 0 13 3 / 19 = 0.15789 0.00598 ## TweakPsiSubtree 0 54 20 / 64 = 0.31250 0.00958 ## TweakPsiSegment 0 6 2 / 13 = 0.15385 0.00014 ## TweakPsiPhiSubtree 3 37 7 / 49 = 0.14286 0.01016 ## TweakPsiPhiSegment 0 33 11 / 44 = 0.25000 0.00735 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 18 8 / 31 = 0.25806 0.00212 ## OneRotamer 0 51 22 / 126 = 0.17460 0.02955 ## ClashingRotamer 0 4 1 / 50 = 0.02000 0.00287 ## ClusteredRotamer 1 12 0 / 54 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 183 = 0.02732 0.00840 ## CloseGap 2 20 10 / 305 = 0.03279 0.05666 ## HealGap 0 56 3 / 179 = 0.01676 0.00010 ## MoveGap 0 6 2 / 166 = 0.01205 0.00514 ## ReduceConstraint 0 6 2 / 134 = 0.01493 0.00125 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 854 = 0.01639 0.09962 ## InsertFragment 0 4 2 / 150 = 0.01333 0.00343 ## TwoFragment 0 1 1 / 178 = 0.00562 0.00776 ## CrossOver 8 22 12 / 202 = 0.05941 0.01771 ## CrossAndInsert 6 3 1 / 158 = 0.00633 0.00017 ## ReduceClash 0 4 0 / 156 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 34: best score out of 20: T0287.try7-al4 227.95439 cost/residue, 217 clashes 0.14444 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 22 = 0.13636 0.00093 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 1 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 0 14 4 / 23 = 0.17391 0.00828 ## TweakPsiSubtree 0 58 23 / 70 = 0.32857 0.00888 ## TweakPsiSegment 0 6 2 / 13 = 0.15385 0.00014 ## TweakPsiPhiSubtree 3 40 7 / 52 = 0.13462 0.00957 ## TweakPsiPhiSegment 1 35 12 / 47 = 0.25532 0.00780 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 18 9 / 32 = 0.28125 0.00216 ## OneRotamer 0 52 22 / 132 = 0.16667 0.02820 ## ClashingRotamer 0 4 1 / 50 = 0.02000 0.00287 ## ClusteredRotamer 1 12 0 / 54 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 188 = 0.02660 0.00818 ## CloseGap 2 20 10 / 317 = 0.03155 0.05452 ## HealGap 0 56 3 / 188 = 0.01596 0.00009 ## MoveGap 0 6 2 / 170 = 0.01176 0.00502 ## ReduceConstraint 0 6 2 / 137 = 0.01460 0.00122 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 871 = 0.01607 0.09767 ## InsertFragment 0 4 2 / 152 = 0.01316 0.00338 ## TwoFragment 0 1 1 / 185 = 0.00541 0.00747 ## CrossOver 8 22 12 / 206 = 0.05825 0.01737 ## CrossAndInsert 6 3 1 / 164 = 0.00610 0.00017 ## ReduceClash 0 4 0 / 161 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 35: best score out of 20: T0287.try7-al4 227.95439 cost/residue, 217 clashes 0.14444 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 22 = 0.13636 0.00093 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 1 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 0 18 5 / 30 = 0.16667 0.00856 ## TweakPsiSubtree 0 59 24 / 72 = 0.33333 0.00871 ## TweakPsiSegment 0 6 2 / 14 = 0.14286 0.00013 ## TweakPsiPhiSubtree 3 41 7 / 55 = 0.12727 0.00905 ## TweakPsiPhiSegment 1 36 12 / 50 = 0.24000 0.00733 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 9 / 34 = 0.26471 0.00203 ## OneRotamer 0 56 23 / 148 = 0.15541 0.02665 ## ClashingRotamer 0 4 1 / 50 = 0.02000 0.00287 ## ClusteredRotamer 1 12 0 / 58 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 192 = 0.02604 0.00801 ## CloseGap 2 20 10 / 324 = 0.03086 0.05334 ## HealGap 0 56 3 / 192 = 0.01562 0.00009 ## MoveGap 0 6 2 / 174 = 0.01149 0.00491 ## ReduceConstraint 0 6 2 / 139 = 0.01439 0.00120 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 885 = 0.01582 0.09613 ## InsertFragment 0 4 2 / 154 = 0.01299 0.00334 ## TwoFragment 0 1 1 / 188 = 0.00532 0.00735 ## CrossOver 8 23 12 / 220 = 0.05455 0.01626 ## CrossAndInsert 6 3 1 / 168 = 0.00595 0.00016 ## ReduceClash 0 4 0 / 164 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 42 next to short segment # Closing gap before 41 next to short segment # generation 36: best score out of 20: T0287.try7-al4 227.68651 cost/residue, 210 clashes 0.14444 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 24 = 0.16667 0.00135 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 1 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 10 = 0.10000 0.00000 ## TweakPhiSegment 0 20 6 / 37 = 0.16216 0.00742 ## TweakPsiSubtree 0 61 25 / 74 = 0.33784 0.00897 ## TweakPsiSegment 0 6 2 / 15 = 0.13333 0.00012 ## TweakPsiPhiSubtree 3 42 7 / 57 = 0.12281 0.00873 ## TweakPsiPhiSegment 1 37 12 / 55 = 0.21818 0.00666 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 9 / 34 = 0.26471 0.00203 ## OneRotamer 0 61 28 / 165 = 0.16970 0.02922 ## ClashingRotamer 0 4 1 / 51 = 0.01961 0.00281 ## ClusteredRotamer 1 12 0 / 59 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 196 = 0.02551 0.00785 ## CloseGap 2 21 11 / 333 = 0.03303 0.05276 ## HealGap 0 56 3 / 192 = 0.01562 0.00009 ## MoveGap 0 6 2 / 175 = 0.01143 0.00488 ## ReduceConstraint 0 6 2 / 141 = 0.01418 0.00119 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 903 = 0.01550 0.09421 ## InsertFragment 0 4 2 / 161 = 0.01242 0.00319 ## TwoFragment 0 1 1 / 195 = 0.00513 0.00709 ## CrossOver 9 23 12 / 226 = 0.05310 0.01583 ## CrossAndInsert 6 3 1 / 172 = 0.00581 0.00016 ## ReduceClash 0 4 0 / 166 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 37: best score out of 20: T0287.try7-al4 227.68439 cost/residue, 210 clashes 0.14444 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 25 = 0.16000 0.00129 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 1 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 10 = 0.10000 0.00000 ## TweakPhiSegment 0 21 6 / 39 = 0.15385 0.00704 ## TweakPsiSubtree 0 66 28 / 81 = 0.34568 0.00825 ## TweakPsiSegment 0 7 2 / 17 = 0.11765 0.00010 ## TweakPsiPhiSubtree 3 42 7 / 57 = 0.12281 0.00873 ## TweakPsiPhiSegment 1 37 12 / 56 = 0.21429 0.00654 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 21 9 / 35 = 0.25714 0.00197 ## OneRotamer 0 65 29 / 187 = 0.15508 0.02682 ## ClashingRotamer 0 4 1 / 52 = 0.01923 0.00276 ## ClusteredRotamer 1 12 0 / 60 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 199 = 0.02513 0.00773 ## CloseGap 2 21 11 / 342 = 0.03216 0.05137 ## HealGap 0 56 3 / 195 = 0.01538 0.00009 ## MoveGap 0 6 2 / 179 = 0.01117 0.00477 ## ReduceConstraint 0 6 2 / 145 = 0.01379 0.00115 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 917 = 0.01527 0.09277 ## InsertFragment 0 4 2 / 167 = 0.01198 0.00308 ## TwoFragment 0 1 1 / 197 = 0.00508 0.00701 ## CrossOver 10 23 12 / 231 = 0.05195 0.01549 ## CrossAndInsert 6 3 1 / 175 = 0.00571 0.00015 ## ReduceClash 0 4 0 / 173 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 38: best score out of 20: T0287.try7-al4 227.52487 cost/residue, 207 clashes 0.14444 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 26 = 0.15385 0.00124 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 1 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 11 = 0.09091 0.00000 ## TweakPhiSegment 0 23 6 / 43 = 0.13953 0.00639 ## TweakPsiSubtree 0 67 29 / 84 = 0.34524 0.00795 ## TweakPsiSegment 0 7 2 / 17 = 0.11765 0.00010 ## TweakPsiPhiSubtree 3 45 8 / 61 = 0.13115 0.01042 ## TweakPsiPhiSegment 1 39 12 / 59 = 0.20339 0.00621 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 21 9 / 36 = 0.25000 0.00192 ## OneRotamer 0 68 32 / 201 = 0.15920 0.02714 ## ClashingRotamer 0 4 1 / 54 = 0.01852 0.00265 ## ClusteredRotamer 1 12 0 / 60 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 205 = 0.02439 0.00750 ## CloseGap 2 21 11 / 348 = 0.03161 0.05048 ## HealGap 0 56 3 / 200 = 0.01500 0.00009 ## MoveGap 0 6 2 / 181 = 0.01105 0.00472 ## ReduceConstraint 0 6 2 / 150 = 0.01333 0.00112 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 933 = 0.01501 0.09118 ## InsertFragment 0 4 2 / 170 = 0.01176 0.00302 ## TwoFragment 0 1 1 / 202 = 0.00495 0.00684 ## CrossOver 10 24 13 / 238 = 0.05462 0.01513 ## CrossAndInsert 7 3 1 / 178 = 0.00562 0.00015 ## ReduceClash 0 4 0 / 177 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 39: best score out of 20: T0287.try7-al4 227.36754 cost/residue, 210 clashes 0.14444 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 28 = 0.14286 0.00116 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 1 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 2 / 13 = 0.15385 0.00946 ## TweakPhiSegment 2 24 6 / 49 = 0.12245 0.00561 ## TweakPsiSubtree 0 70 33 / 88 = 0.37500 0.00959 ## TweakPsiSegment 0 9 3 / 19 = 0.15789 0.00017 ## TweakPsiPhiSubtree 3 46 8 / 63 = 0.12698 0.01009 ## TweakPsiPhiSegment 1 39 12 / 61 = 0.19672 0.00601 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 22 10 / 37 = 0.27027 0.00218 ## OneRotamer 0 74 36 / 221 = 0.16290 0.02678 ## ClashingRotamer 0 4 1 / 54 = 0.01852 0.00265 ## ClusteredRotamer 1 12 0 / 61 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 207 = 0.02415 0.00743 ## CloseGap 2 21 11 / 352 = 0.03125 0.04991 ## HealGap 0 56 3 / 202 = 0.01485 0.00009 ## MoveGap 0 6 2 / 184 = 0.01087 0.00464 ## ReduceConstraint 0 6 2 / 153 = 0.01307 0.00109 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 953 = 0.01469 0.08927 ## InsertFragment 0 4 2 / 172 = 0.01163 0.00299 ## TwoFragment 0 1 1 / 204 = 0.00490 0.00677 ## CrossOver 10 25 13 / 246 = 0.05285 0.01464 ## CrossAndInsert 7 3 1 / 183 = 0.00546 0.00015 ## ReduceClash 0 4 0 / 179 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 40: best score out of 20: T0287.try7-al4 227.36285 cost/residue, 210 clashes 0.14436 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 28 = 0.14286 0.00116 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 1 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 15 5 / 29 = 0.17241 0.00787 ## TweakPhiSegment 2 25 6 / 52 = 0.11538 0.00528 ## TweakPsiSubtree 0 73 36 / 93 = 0.38710 0.00952 ## TweakPsiSegment 0 10 3 / 20 = 0.15000 0.00016 ## TweakPsiPhiSubtree 3 48 9 / 67 = 0.13433 0.01055 ## TweakPsiPhiSegment 1 39 12 / 62 = 0.19355 0.00591 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 22 11 / 38 = 0.28947 0.00247 ## OneRotamer 0 74 36 / 234 = 0.15385 0.02529 ## ClashingRotamer 0 4 1 / 54 = 0.01852 0.00265 ## ClusteredRotamer 1 12 0 / 62 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 213 = 0.02347 0.00722 ## CloseGap 2 21 11 / 361 = 0.03047 0.04867 ## HealGap 0 56 3 / 202 = 0.01485 0.00009 ## MoveGap 0 6 2 / 190 = 0.01053 0.00449 ## ReduceConstraint 0 6 2 / 158 = 0.01266 0.00106 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 964 = 0.01452 0.08825 ## InsertFragment 0 4 2 / 175 = 0.01143 0.00294 ## TwoFragment 0 1 1 / 207 = 0.00483 0.00667 ## CrossOver 10 25 13 / 252 = 0.05159 0.01429 ## CrossAndInsert 7 3 1 / 186 = 0.00538 0.00015 ## ReduceClash 0 4 0 / 181 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 41: best score out of 20: T0287.try7-al4 227.32314 cost/residue, 208 clashes 0.14502 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 31 = 0.12903 0.00104 ## JiggleSubtree 0 2 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 1 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 8 / 37 = 0.21622 0.00736 ## TweakPhiSegment 2 26 6 / 54 = 0.11111 0.00509 ## TweakPsiSubtree 0 75 36 / 97 = 0.37113 0.00913 ## TweakPsiSegment 0 10 3 / 20 = 0.15000 0.00016 ## TweakPsiPhiSubtree 3 52 13 / 80 = 0.16250 0.00981 ## TweakPsiPhiSegment 1 39 12 / 65 = 0.18462 0.00564 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 22 11 / 40 = 0.27500 0.00235 ## OneRotamer 0 76 38 / 242 = 0.15702 0.02460 ## ClashingRotamer 0 4 1 / 55 = 0.01818 0.00261 ## ClusteredRotamer 1 12 0 / 64 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 218 = 0.02294 0.00705 ## CloseGap 2 21 11 / 366 = 0.03005 0.04800 ## HealGap 0 56 3 / 207 = 0.01449 0.00009 ## MoveGap 0 6 2 / 194 = 0.01031 0.00440 ## ReduceConstraint 0 6 2 / 162 = 0.01235 0.00103 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 979 = 0.01430 0.08690 ## InsertFragment 0 4 2 / 178 = 0.01124 0.00289 ## TwoFragment 0 1 1 / 210 = 0.00476 0.00658 ## CrossOver 10 25 13 / 257 = 0.05058 0.01401 ## CrossAndInsert 7 3 1 / 188 = 0.00532 0.00014 ## ReduceClash 0 4 0 / 183 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 42: best score out of 20: T0287.try7-al4 227.26393 cost/residue, 209 clashes 0.14376 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 31 = 0.12903 0.00104 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 1 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 13 / 44 = 0.29545 0.00986 ## TweakPhiSegment 2 26 6 / 58 = 0.10345 0.00474 ## TweakPsiSubtree 1 78 39 / 101 = 0.38614 0.00926 ## TweakPsiSegment 0 10 3 / 20 = 0.15000 0.00016 ## TweakPsiPhiSubtree 3 54 16 / 86 = 0.18605 0.00977 ## TweakPsiPhiSegment 1 40 12 / 67 = 0.17910 0.00547 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 25 13 / 45 = 0.28889 0.00231 ## OneRotamer 0 78 40 / 255 = 0.15686 0.02346 ## ClashingRotamer 0 4 1 / 55 = 0.01818 0.00261 ## ClusteredRotamer 1 12 0 / 66 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 221 = 0.02262 0.00696 ## CloseGap 2 21 11 / 371 = 0.02965 0.04735 ## HealGap 0 56 3 / 212 = 0.01415 0.00008 ## MoveGap 0 6 2 / 196 = 0.01020 0.00436 ## ReduceConstraint 0 6 2 / 166 = 0.01205 0.00101 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 994 = 0.01408 0.08559 ## InsertFragment 0 4 2 / 182 = 0.01099 0.00282 ## TwoFragment 0 1 1 / 214 = 0.00467 0.00646 ## CrossOver 10 25 13 / 262 = 0.04962 0.01374 ## CrossAndInsert 7 3 1 / 192 = 0.00521 0.00014 ## ReduceClash 0 4 0 / 186 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 43: best score out of 20: T0287.try7-al4 227.17453 cost/residue, 208 clashes 0.13976 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 32 = 0.12500 0.00101 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 1 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 1 28 14 / 51 = 0.27451 0.01202 ## TweakPhiSegment 2 26 6 / 59 = 0.10169 0.00466 ## TweakPsiSubtree 1 83 42 / 107 = 0.39252 0.00904 ## TweakPsiSegment 0 10 3 / 20 = 0.15000 0.00016 ## TweakPsiPhiSubtree 3 54 16 / 90 = 0.17778 0.00933 ## TweakPsiPhiSegment 1 41 13 / 69 = 0.18841 0.00636 ## TweakHbondSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 27 14 / 48 = 0.29167 0.00227 ## OneRotamer 0 79 42 / 267 = 0.15730 0.02246 ## ClashingRotamer 0 4 1 / 57 = 0.01754 0.00251 ## ClusteredRotamer 1 12 0 / 68 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 224 = 0.02232 0.00686 ## CloseGap 2 21 11 / 381 = 0.02887 0.04611 ## HealGap 0 56 3 / 215 = 0.01395 0.00008 ## MoveGap 0 6 2 / 198 = 0.01010 0.00431 ## ReduceConstraint 0 6 2 / 171 = 0.01170 0.00098 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1011 = 0.01385 0.08415 ## InsertFragment 0 4 2 / 185 = 0.01081 0.00278 ## TwoFragment 0 1 1 / 218 = 0.00459 0.00634 ## CrossOver 10 25 13 / 265 = 0.04906 0.01359 ## CrossAndInsert 7 3 1 / 196 = 0.00510 0.00014 ## ReduceClash 0 4 0 / 188 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 44: best score out of 20: T0287.try7-al4 227.09177 cost/residue, 209 clashes 0.14003 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 4 / 34 = 0.11765 0.00095 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 1 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 2 32 16 / 58 = 0.27586 0.01260 ## TweakPhiSegment 2 29 7 / 65 = 0.10769 0.00435 ## TweakPsiSubtree 1 86 46 / 111 = 0.41441 0.00949 ## TweakPsiSegment 0 10 3 / 21 = 0.14286 0.00016 ## TweakPsiPhiSubtree 3 55 17 / 96 = 0.17708 0.00974 ## TweakPsiPhiSegment 1 41 13 / 73 = 0.17808 0.00601 ## TweakHbondSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 9 = 0.00000 0.00000 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 27 15 / 50 = 0.30000 0.00222 ## OneRotamer 0 81 43 / 277 = 0.15523 0.02174 ## ClashingRotamer 0 4 1 / 59 = 0.01695 0.00243 ## ClusteredRotamer 1 12 0 / 69 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 231 = 0.02165 0.00666 ## CloseGap 2 21 11 / 393 = 0.02799 0.04470 ## HealGap 0 56 3 / 219 = 0.01370 0.00008 ## MoveGap 0 6 2 / 199 = 0.01005 0.00429 ## ReduceConstraint 0 6 2 / 175 = 0.01143 0.00096 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1022 = 0.01370 0.08324 ## InsertFragment 0 4 2 / 188 = 0.01064 0.00273 ## TwoFragment 0 1 1 / 219 = 0.00457 0.00631 ## CrossOver 10 25 13 / 272 = 0.04779 0.01324 ## CrossAndInsert 7 3 1 / 197 = 0.00508 0.00014 ## ReduceClash 0 4 0 / 190 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 45: best score out of 20: T0287.try7-al4 226.80592 cost/residue, 208 clashes 0.14003 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 4 / 35 = 0.11429 0.00092 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 1 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 2 37 19 / 67 = 0.28358 0.01190 ## TweakPhiSegment 2 30 7 / 67 = 0.10448 0.00422 ## TweakPsiSubtree 1 89 48 / 115 = 0.41739 0.00923 ## TweakPsiSegment 0 10 3 / 21 = 0.14286 0.00016 ## TweakPsiPhiSubtree 3 56 17 / 102 = 0.16667 0.00917 ## TweakPsiPhiSegment 1 41 14 / 75 = 0.18667 0.00624 ## TweakHbondSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 27 16 / 52 = 0.30769 0.00215 ## OneRotamer 0 84 45 / 289 = 0.15571 0.02187 ## ClashingRotamer 0 4 1 / 59 = 0.01695 0.00243 ## ClusteredRotamer 1 12 0 / 70 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 235 = 0.02128 0.00654 ## CloseGap 2 21 11 / 400 = 0.02750 0.04392 ## HealGap 0 56 3 / 222 = 0.01351 0.00008 ## MoveGap 0 6 2 / 205 = 0.00976 0.00417 ## ReduceConstraint 0 6 2 / 178 = 0.01124 0.00094 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1040 = 0.01346 0.08180 ## InsertFragment 0 4 2 / 189 = 0.01058 0.00272 ## TwoFragment 0 1 1 / 221 = 0.00452 0.00625 ## CrossOver 10 26 13 / 279 = 0.04659 0.01291 ## CrossAndInsert 7 3 1 / 202 = 0.00495 0.00013 ## ReduceClash 0 4 0 / 192 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 46: best score out of 20: T0287.try7-al4 226.60977 cost/residue, 206 clashes 0.14003 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 4 / 36 = 0.11111 0.00090 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 1 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 2 44 23 / 80 = 0.28750 0.01164 ## TweakPhiSegment 2 32 7 / 71 = 0.09859 0.00398 ## TweakPsiSubtree 1 91 51 / 121 = 0.42149 0.00887 ## TweakPsiSegment 0 10 3 / 22 = 0.13636 0.00015 ## TweakPsiPhiSubtree 3 59 18 / 107 = 0.16822 0.00894 ## TweakPsiPhiSegment 1 42 16 / 78 = 0.20513 0.00608 ## TweakHbondSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 27 17 / 54 = 0.31481 0.00214 ## OneRotamer 0 86 47 / 304 = 0.15461 0.02186 ## ClashingRotamer 0 4 1 / 61 = 0.01639 0.00235 ## ClusteredRotamer 1 12 0 / 70 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 241 = 0.02075 0.00638 ## CloseGap 2 21 11 / 408 = 0.02696 0.04306 ## HealGap 0 56 3 / 225 = 0.01333 0.00008 ## MoveGap 0 6 2 / 208 = 0.00962 0.00411 ## ReduceConstraint 0 6 2 / 180 = 0.01111 0.00093 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1051 = 0.01332 0.08094 ## InsertFragment 0 4 2 / 194 = 0.01031 0.00265 ## TwoFragment 0 1 1 / 225 = 0.00444 0.00614 ## CrossOver 11 26 13 / 284 = 0.04577 0.01268 ## CrossAndInsert 7 3 1 / 203 = 0.00493 0.00013 ## ReduceClash 0 4 0 / 192 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 36 next to short segment # generation 47: best score out of 20: T0287.try7-al4 226.50047 cost/residue, 206 clashes 0.13861 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 4 / 38 = 0.10526 0.00085 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 1 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 2 48 27 / 91 = 0.29670 0.01074 ## TweakPhiSegment 2 32 7 / 72 = 0.09722 0.00393 ## TweakPsiSubtree 1 95 55 / 129 = 0.42636 0.00938 ## TweakPsiSegment 0 10 3 / 23 = 0.13043 0.00014 ## TweakPsiPhiSubtree 3 62 21 / 112 = 0.18750 0.00960 ## TweakPsiPhiSegment 1 43 16 / 82 = 0.19512 0.00579 ## TweakHbondSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 29 18 / 59 = 0.30508 0.00200 ## OneRotamer 0 88 48 / 319 = 0.15047 0.02159 ## ClashingRotamer 0 4 1 / 62 = 0.01613 0.00231 ## ClusteredRotamer 1 12 0 / 71 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 243 = 0.02058 0.00633 ## CloseGap 2 21 11 / 413 = 0.02663 0.04254 ## HealGap 0 56 3 / 229 = 0.01310 0.00008 ## MoveGap 0 6 2 / 210 = 0.00952 0.00407 ## ReduceConstraint 0 6 2 / 183 = 0.01093 0.00092 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1067 = 0.01312 0.07973 ## InsertFragment 0 4 2 / 196 = 0.01020 0.00262 ## TwoFragment 0 1 1 / 225 = 0.00444 0.00614 ## CrossOver 11 26 13 / 288 = 0.04514 0.01250 ## CrossAndInsert 7 3 1 / 204 = 0.00490 0.00013 ## ReduceClash 0 4 0 / 196 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 48: best score out of 20: T0287.try7-al4 226.49049 cost/residue, 206 clashes 0.13861 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 4 / 38 = 0.10526 0.00085 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 1 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 54 30 / 97 = 0.30928 0.01091 ## TweakPhiSegment 2 33 7 / 74 = 0.09459 0.00382 ## TweakPsiSubtree 1 99 60 / 138 = 0.43478 0.00896 ## TweakPsiSegment 0 10 3 / 23 = 0.13043 0.00014 ## TweakPsiPhiSubtree 3 65 22 / 122 = 0.18033 0.00917 ## TweakPsiPhiSegment 2 43 16 / 84 = 0.19048 0.00565 ## TweakHbondSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 29 18 / 59 = 0.30508 0.00200 ## OneRotamer 0 89 48 / 335 = 0.14328 0.02056 ## ClashingRotamer 0 4 1 / 62 = 0.01613 0.00231 ## ClusteredRotamer 1 12 0 / 72 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 245 = 0.02041 0.00628 ## CloseGap 2 21 11 / 415 = 0.02651 0.04233 ## HealGap 0 56 3 / 234 = 0.01282 0.00008 ## MoveGap 0 6 2 / 215 = 0.00930 0.00397 ## ReduceConstraint 0 6 2 / 189 = 0.01058 0.00089 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1082 = 0.01294 0.07863 ## InsertFragment 0 4 2 / 200 = 0.01000 0.00257 ## TwoFragment 0 1 1 / 227 = 0.00441 0.00609 ## CrossOver 11 26 13 / 294 = 0.04422 0.01225 ## CrossAndInsert 7 3 1 / 205 = 0.00488 0.00013 ## ReduceClash 0 4 0 / 199 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 49: best score out of 20: T0287.try7-al4 226.44983 cost/residue, 206 clashes 0.13861 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 4 / 38 = 0.10526 0.00085 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 1 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 3 55 31 / 101 = 0.30693 0.01061 ## TweakPhiSegment 2 33 7 / 74 = 0.09459 0.00382 ## TweakPsiSubtree 1 101 61 / 143 = 0.42657 0.00868 ## TweakPsiSegment 0 10 4 / 24 = 0.16667 0.00041 ## TweakPsiPhiSubtree 3 70 25 / 134 = 0.18657 0.00863 ## TweakPsiPhiSegment 3 43 16 / 88 = 0.18182 0.00539 ## TweakHbondSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 31 20 / 62 = 0.32258 0.00199 ## OneRotamer 0 92 50 / 347 = 0.14409 0.01997 ## ClashingRotamer 0 4 1 / 64 = 0.01562 0.00224 ## ClusteredRotamer 1 12 0 / 72 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 248 = 0.02016 0.00620 ## CloseGap 2 21 11 / 422 = 0.02607 0.04163 ## HealGap 0 56 3 / 237 = 0.01266 0.00007 ## MoveGap 0 6 2 / 217 = 0.00922 0.00394 ## ReduceConstraint 0 6 2 / 191 = 0.01047 0.00088 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1099 = 0.01274 0.07741 ## InsertFragment 0 4 2 / 203 = 0.00985 0.00253 ## TwoFragment 0 1 1 / 231 = 0.00433 0.00598 ## CrossOver 11 26 13 / 302 = 0.04305 0.01192 ## CrossAndInsert 7 3 1 / 210 = 0.00476 0.00013 ## ReduceClash 0 4 0 / 200 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 50: best score out of 20: T0287.try7-al4 226.44461 cost/residue, 206 clashes 0.13861 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 4 / 38 = 0.10526 0.00085 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 37 = 0.00000 0.00000 ## OptSegment 1 0 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 3 61 31 / 109 = 0.28440 0.00983 ## TweakPhiSegment 2 33 7 / 74 = 0.09459 0.00382 ## TweakPsiSubtree 1 105 66 / 156 = 0.42308 0.00803 ## TweakPsiSegment 0 10 4 / 25 = 0.16000 0.00039 ## TweakPsiPhiSubtree 3 72 26 / 141 = 0.18440 0.00821 ## TweakPsiPhiSegment 3 43 16 / 90 = 0.17778 0.00527 ## TweakHbondSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 32 21 / 63 = 0.33333 0.00206 ## OneRotamer 0 94 52 / 367 = 0.14169 0.01903 ## ClashingRotamer 0 4 1 / 68 = 0.01471 0.00211 ## ClusteredRotamer 1 12 0 / 73 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 250 = 0.02000 0.00615 ## CloseGap 2 21 11 / 426 = 0.02582 0.04124 ## HealGap 0 56 3 / 237 = 0.01266 0.00007 ## MoveGap 0 6 2 / 220 = 0.00909 0.00388 ## ReduceConstraint 0 6 2 / 194 = 0.01031 0.00086 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1114 = 0.01257 0.07637 ## InsertFragment 0 4 2 / 203 = 0.00985 0.00253 ## TwoFragment 0 1 1 / 233 = 0.00429 0.00593 ## CrossOver 11 27 13 / 309 = 0.04207 0.01165 ## CrossAndInsert 7 3 1 / 211 = 0.00474 0.00013 ## ReduceClash 0 4 0 / 201 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 42 next to short segment # generation 51: best score out of 20: T0287.try7-al4 226.42184 cost/residue, 206 clashes 0.13861 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 40 = 0.10000 0.00081 ## JiggleSubtree 0 2 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 1 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 3 63 32 / 116 = 0.27586 0.00924 ## TweakPhiSegment 2 33 7 / 76 = 0.09211 0.00372 ## TweakPsiSubtree 1 108 69 / 161 = 0.42857 0.00796 ## TweakPsiSegment 0 10 4 / 25 = 0.16000 0.00039 ## TweakPsiPhiSubtree 3 73 27 / 148 = 0.18243 0.00800 ## TweakPsiPhiSegment 3 44 17 / 92 = 0.18478 0.00532 ## TweakHbondSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 36 24 / 68 = 0.35294 0.00245 ## OneRotamer 0 95 52 / 376 = 0.13830 0.01857 ## ClashingRotamer 0 4 1 / 70 = 0.01429 0.00205 ## ClusteredRotamer 1 12 0 / 73 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 253 = 0.01976 0.00608 ## CloseGap 2 21 11 / 434 = 0.02535 0.04048 ## HealGap 0 56 3 / 242 = 0.01240 0.00007 ## MoveGap 0 6 2 / 225 = 0.00889 0.00380 ## ReduceConstraint 0 6 2 / 195 = 0.01026 0.00086 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1132 = 0.01237 0.07515 ## InsertFragment 0 4 2 / 207 = 0.00966 0.00248 ## TwoFragment 0 1 1 / 234 = 0.00427 0.00590 ## CrossOver 11 27 13 / 312 = 0.04167 0.01154 ## CrossAndInsert 7 3 1 / 213 = 0.00469 0.00013 ## ReduceClash 0 4 0 / 203 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 42 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 52: best score out of 20: T0287.try7-al4 226.28998 cost/residue, 204 clashes 0.13945 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 40 = 0.10000 0.00081 ## JiggleSubtree 0 2 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 1 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 3 65 33 / 128 = 0.25781 0.00837 ## TweakPhiSegment 2 33 7 / 76 = 0.09211 0.00372 ## TweakPsiSubtree 1 112 73 / 171 = 0.42690 0.00755 ## TweakPsiSegment 0 11 5 / 28 = 0.17857 0.00134 ## TweakPsiPhiSubtree 3 76 28 / 155 = 0.18065 0.00766 ## TweakPsiPhiSegment 3 47 19 / 95 = 0.20000 0.00753 ## TweakHbondSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 38 26 / 71 = 0.36620 0.00237 ## OneRotamer 0 96 52 / 385 = 0.13506 0.01814 ## ClashingRotamer 0 4 1 / 71 = 0.01408 0.00202 ## ClusteredRotamer 1 12 0 / 74 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 254 = 0.01969 0.00605 ## CloseGap 2 21 11 / 441 = 0.02494 0.03984 ## HealGap 0 56 3 / 244 = 0.01230 0.00007 ## MoveGap 0 6 2 / 231 = 0.00866 0.00370 ## ReduceConstraint 0 6 2 / 198 = 0.01010 0.00085 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1141 = 0.01227 0.07456 ## InsertFragment 0 4 2 / 211 = 0.00948 0.00244 ## TwoFragment 0 1 1 / 239 = 0.00418 0.00578 ## CrossOver 11 27 13 / 316 = 0.04114 0.01140 ## CrossAndInsert 7 3 1 / 217 = 0.00461 0.00012 ## ReduceClash 0 4 0 / 205 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 53: best score out of 20: T0287.try7-al4 226.22438 cost/residue, 206 clashes 0.13945 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 40 = 0.10000 0.00081 ## JiggleSubtree 0 2 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 1 0 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 67 34 / 134 = 0.25373 0.00813 ## TweakPhiSegment 2 35 8 / 79 = 0.10127 0.00424 ## TweakPsiSubtree 1 114 74 / 175 = 0.42286 0.00740 ## TweakPsiSegment 0 12 6 / 31 = 0.19355 0.00140 ## TweakPsiPhiSubtree 4 76 28 / 159 = 0.17610 0.00747 ## TweakPsiPhiSegment 3 54 22 / 106 = 0.20755 0.00746 ## TweakHbondSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 39 27 / 77 = 0.35065 0.00219 ## OneRotamer 0 98 55 / 401 = 0.13716 0.01768 ## ClashingRotamer 0 4 1 / 72 = 0.01389 0.00199 ## ClusteredRotamer 1 12 0 / 75 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 255 = 0.01961 0.00603 ## CloseGap 2 21 11 / 449 = 0.02450 0.03913 ## HealGap 0 56 3 / 245 = 0.01224 0.00007 ## MoveGap 0 6 2 / 239 = 0.00837 0.00357 ## ReduceConstraint 0 6 2 / 199 = 0.01005 0.00084 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1152 = 0.01215 0.07385 ## InsertFragment 0 4 2 / 212 = 0.00943 0.00242 ## TwoFragment 0 1 1 / 243 = 0.00412 0.00569 ## CrossOver 11 27 13 / 318 = 0.04088 0.01132 ## CrossAndInsert 7 3 1 / 218 = 0.00459 0.00012 ## ReduceClash 0 4 0 / 209 = 0.00000 0.00000 # Closing gap before 41 next to short segment # generation 54: best score out of 20: T0287.try7-al4 225.91718 cost/residue, 201 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 40 = 0.10000 0.00081 ## JiggleSubtree 0 3 1 / 8 = 0.12500 0.04639 ## JiggleSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 1 0 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 70 35 / 143 = 0.24476 0.00773 ## TweakPhiSegment 2 36 8 / 84 = 0.09524 0.00399 ## TweakPsiSubtree 1 118 76 / 187 = 0.40642 0.00696 ## TweakPsiSegment 0 13 6 / 33 = 0.18182 0.00132 ## TweakPsiPhiSubtree 5 76 29 / 165 = 0.17576 0.00723 ## TweakPsiPhiSegment 3 56 25 / 117 = 0.21368 0.00778 ## TweakHbondSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 41 28 / 82 = 0.34146 0.00242 ## OneRotamer 0 99 55 / 410 = 0.13415 0.01730 ## ClashingRotamer 0 4 1 / 73 = 0.01370 0.00196 ## ClusteredRotamer 1 12 0 / 76 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 256 = 0.01953 0.00601 ## CloseGap 2 21 11 / 451 = 0.02439 0.03895 ## HealGap 0 56 3 / 247 = 0.01215 0.00007 ## MoveGap 0 6 2 / 243 = 0.00823 0.00351 ## ReduceConstraint 0 6 2 / 199 = 0.01005 0.00084 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1164 = 0.01203 0.07309 ## InsertFragment 0 4 2 / 215 = 0.00930 0.00239 ## TwoFragment 0 1 1 / 248 = 0.00403 0.00557 ## CrossOver 11 27 13 / 321 = 0.04050 0.01122 ## CrossAndInsert 7 3 1 / 221 = 0.00452 0.00012 ## ReduceClash 0 4 0 / 210 = 0.00000 0.00000 # Closing gap before 41 next to short segment # generation 55: best score out of 20: T0287.try7-al4 225.55038 cost/residue, 199 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 5 / 42 = 0.11905 0.00955 ## JiggleSubtree 0 10 4 / 49 = 0.08163 0.01708 ## JiggleSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 1 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 71 35 / 144 = 0.24306 0.00768 ## TweakPhiSegment 2 37 8 / 85 = 0.09412 0.00394 ## TweakPsiSubtree 1 119 76 / 191 = 0.39791 0.00682 ## TweakPsiSegment 0 13 6 / 33 = 0.18182 0.00132 ## TweakPsiPhiSubtree 5 77 30 / 166 = 0.18072 0.00759 ## TweakPsiPhiSegment 4 57 26 / 120 = 0.21667 0.00796 ## TweakHbondSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 10 = 0.00000 0.00000 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 41 28 / 83 = 0.33735 0.00239 ## OneRotamer 0 100 56 / 416 = 0.13462 0.01793 ## ClashingRotamer 0 4 1 / 75 = 0.01333 0.00191 ## ClusteredRotamer 1 12 0 / 76 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 258 = 0.01938 0.00596 ## CloseGap 2 21 11 / 453 = 0.02428 0.03878 ## HealGap 0 56 3 / 251 = 0.01195 0.00007 ## MoveGap 0 6 2 / 247 = 0.00810 0.00346 ## ReduceConstraint 0 6 2 / 200 = 0.01000 0.00084 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1172 = 0.01195 0.07259 ## InsertFragment 0 4 2 / 220 = 0.00909 0.00234 ## TwoFragment 0 1 1 / 252 = 0.00397 0.00548 ## CrossOver 11 27 13 / 324 = 0.04012 0.01111 ## CrossAndInsert 7 3 1 / 221 = 0.00452 0.00012 ## ReduceClash 0 4 0 / 212 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 56: best score out of 20: T0287.try7-al4 225.35364 cost/residue, 199 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 10 / 60 = 0.16667 0.00769 ## JiggleSubtree 0 11 5 / 55 = 0.09091 0.01977 ## JiggleSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 1 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 72 35 / 148 = 0.23649 0.00747 ## TweakPhiSegment 2 37 8 / 87 = 0.09195 0.00385 ## TweakPsiSubtree 1 122 77 / 196 = 0.39286 0.00664 ## TweakPsiSegment 0 13 6 / 34 = 0.17647 0.00128 ## TweakPsiPhiSubtree 5 79 31 / 170 = 0.18235 0.00750 ## TweakPsiPhiSegment 4 60 28 / 123 = 0.22764 0.00803 ## TweakHbondSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 11 = 0.00000 0.00000 ## TweakMultimer 35 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 41 28 / 84 = 0.33333 0.00236 ## OneRotamer 0 102 57 / 425 = 0.13412 0.01801 ## ClashingRotamer 0 4 1 / 75 = 0.01333 0.00191 ## ClusteredRotamer 1 12 0 / 77 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 260 = 0.01923 0.00591 ## CloseGap 2 21 11 / 457 = 0.02407 0.03844 ## HealGap 0 56 3 / 253 = 0.01186 0.00007 ## MoveGap 0 6 2 / 249 = 0.00803 0.00343 ## ReduceConstraint 0 6 2 / 205 = 0.00976 0.00082 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1185 = 0.01181 0.07179 ## InsertFragment 0 4 2 / 222 = 0.00901 0.00232 ## TwoFragment 0 1 1 / 255 = 0.00392 0.00542 ## CrossOver 11 27 13 / 328 = 0.03963 0.01098 ## CrossAndInsert 7 3 1 / 225 = 0.00444 0.00012 ## ReduceClash 0 4 0 / 214 = 0.00000 0.00000 # Closing gap before 41 next to short segment # generation 57: best score out of 20: T0287.try7-al4 225.12624 cost/residue, 191 clashes 0.14201 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 11 / 71 = 0.15493 0.00652 ## JiggleSubtree 0 12 6 / 66 = 0.09091 0.01776 ## JiggleSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 1 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 74 36 / 151 = 0.23841 0.00883 ## TweakPhiSegment 2 37 8 / 87 = 0.09195 0.00385 ## TweakPsiSubtree 1 123 77 / 200 = 0.38500 0.00651 ## TweakPsiSegment 0 15 6 / 36 = 0.16667 0.00121 ## TweakPsiPhiSubtree 5 80 33 / 174 = 0.18966 0.00799 ## TweakPsiPhiSegment 4 64 29 / 128 = 0.22656 0.00950 ## TweakHbondSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 11 = 0.00000 0.00000 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 41 28 / 86 = 0.32558 0.00231 ## OneRotamer 0 105 60 / 431 = 0.13921 0.01792 ## ClashingRotamer 0 4 1 / 76 = 0.01316 0.00189 ## ClusteredRotamer 1 12 0 / 77 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 263 = 0.01901 0.00585 ## CloseGap 2 21 11 / 460 = 0.02391 0.03819 ## HealGap 0 56 3 / 255 = 0.01176 0.00007 ## MoveGap 0 6 2 / 253 = 0.00791 0.00338 ## ReduceConstraint 0 6 2 / 209 = 0.00957 0.00080 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1202 = 0.01165 0.07078 ## InsertFragment 0 4 2 / 225 = 0.00889 0.00228 ## TwoFragment 0 1 1 / 261 = 0.00383 0.00529 ## CrossOver 11 27 13 / 330 = 0.03939 0.01091 ## CrossAndInsert 7 3 1 / 228 = 0.00439 0.00012 ## ReduceClash 0 4 0 / 217 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 151 # Closing gap before 41 next to short segment # generation 58: best score out of 20: T0287.try7-al4 224.96075 cost/residue, 201 clashes 0.14281 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 14 / 79 = 0.17722 0.01159 ## JiggleSubtree 0 14 9 / 77 = 0.11688 0.01581 ## JiggleSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 40 = 0.00000 0.00000 ## OptSegment 1 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 75 36 / 156 = 0.23077 0.00854 ## TweakPhiSegment 2 39 8 / 91 = 0.08791 0.00368 ## TweakPsiSubtree 1 124 77 / 203 = 0.37931 0.00642 ## TweakPsiSegment 0 15 6 / 36 = 0.16667 0.00121 ## TweakPsiPhiSubtree 5 80 33 / 176 = 0.18750 0.00790 ## TweakPsiPhiSegment 4 67 31 / 141 = 0.21986 0.00978 ## TweakHbondSubtree 0 4 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 11 = 0.00000 0.00000 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 42 30 / 90 = 0.33333 0.00241 ## OneRotamer 0 107 61 / 442 = 0.13801 0.01753 ## ClashingRotamer 0 4 1 / 77 = 0.01299 0.00186 ## ClusteredRotamer 2 12 0 / 77 = 0.00000 0.00000 ## ReduceBreak 2 10 5 / 267 = 0.01873 0.00576 ## CloseGap 2 21 11 / 465 = 0.02366 0.03778 ## HealGap 0 57 3 / 259 = 0.01158 0.00007 ## MoveGap 0 6 2 / 255 = 0.00784 0.00335 ## ReduceConstraint 0 6 2 / 210 = 0.00952 0.00080 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1211 = 0.01156 0.07025 ## InsertFragment 0 4 2 / 227 = 0.00881 0.00226 ## TwoFragment 0 1 1 / 262 = 0.00382 0.00527 ## CrossOver 11 28 14 / 332 = 0.04217 0.01101 ## CrossAndInsert 7 3 1 / 232 = 0.00431 0.00012 ## ReduceClash 0 4 0 / 219 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 59: best score out of 20: T0287.try7-al4 224.85582 cost/residue, 200 clashes 0.14448 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 15 / 89 = 0.16854 0.01046 ## JiggleSubtree 1 16 11 / 86 = 0.12791 0.01655 ## JiggleSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 40 = 0.00000 0.00000 ## OptSegment 1 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 5 76 36 / 159 = 0.22642 0.00838 ## TweakPhiSegment 2 39 8 / 91 = 0.08791 0.00368 ## TweakPsiSubtree 1 124 77 / 204 = 0.37745 0.00638 ## TweakPsiSegment 0 16 7 / 39 = 0.17949 0.00146 ## TweakPsiPhiSubtree 5 82 34 / 180 = 0.18889 0.00835 ## TweakPsiPhiSegment 5 73 34 / 152 = 0.22368 0.00942 ## TweakHbondSubtree 0 4 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 11 = 0.00000 0.00000 ## TweakMultimer 39 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 43 31 / 91 = 0.34066 0.00240 ## OneRotamer 0 109 63 / 455 = 0.13846 0.01752 ## ClashingRotamer 0 4 1 / 77 = 0.01299 0.00186 ## ClusteredRotamer 2 12 0 / 77 = 0.00000 0.00000 ## ReduceBreak 2 10 6 / 272 = 0.02206 0.00566 ## CloseGap 2 21 11 / 469 = 0.02345 0.03746 ## HealGap 0 57 3 / 263 = 0.01141 0.00007 ## MoveGap 0 6 2 / 258 = 0.00775 0.00331 ## ReduceConstraint 0 6 2 / 213 = 0.00939 0.00079 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1220 = 0.01148 0.06973 ## InsertFragment 0 4 2 / 229 = 0.00873 0.00224 ## TwoFragment 0 1 1 / 263 = 0.00380 0.00525 ## CrossOver 11 28 14 / 333 = 0.04204 0.01098 ## CrossAndInsert 7 3 1 / 238 = 0.00420 0.00011 ## ReduceClash 0 4 0 / 225 = 0.00000 0.00000 # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 60: best score out of 20: T0287.try7-al4 224.82829 cost/residue, 200 clashes 0.14451 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 20 / 107 = 0.18692 0.00914 ## JiggleSubtree 1 17 11 / 98 = 0.11224 0.01452 ## JiggleSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 40 = 0.00000 0.00000 ## OptSegment 1 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 5 76 36 / 161 = 0.22360 0.00828 ## TweakPhiSegment 2 39 8 / 92 = 0.08696 0.00364 ## TweakPsiSubtree 1 126 78 / 208 = 0.37500 0.00626 ## TweakPsiSegment 0 17 7 / 40 = 0.17500 0.00143 ## TweakPsiPhiSubtree 5 84 35 / 187 = 0.18717 0.00819 ## TweakPsiPhiSegment 5 76 36 / 163 = 0.22086 0.01033 ## TweakHbondSubtree 0 5 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 11 = 0.00000 0.00000 ## TweakMultimer 40 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 44 31 / 93 = 0.33333 0.00234 ## OneRotamer 0 109 63 / 466 = 0.13519 0.01711 ## ClashingRotamer 0 4 1 / 77 = 0.01299 0.00186 ## ClusteredRotamer 2 12 0 / 77 = 0.00000 0.00000 ## ReduceBreak 2 10 6 / 274 = 0.02190 0.00562 ## CloseGap 2 21 11 / 472 = 0.02331 0.03722 ## HealGap 0 57 3 / 265 = 0.01132 0.00007 ## MoveGap 0 6 2 / 258 = 0.00775 0.00331 ## ReduceConstraint 0 6 2 / 214 = 0.00935 0.00078 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 1229 = 0.01139 0.06922 ## InsertFragment 0 4 2 / 231 = 0.00866 0.00223 ## TwoFragment 0 1 1 / 265 = 0.00377 0.00521 ## CrossOver 11 28 14 / 334 = 0.04192 0.01095 ## CrossAndInsert 7 3 1 / 240 = 0.00417 0.00011 ## ReduceClash 0 4 0 / 231 = 0.00000 0.00000 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1660370935.pdb -s /var/tmp/to_scwrl_1660370935.seq -o /var/tmp/from_scwrl_1660370935.pdb > /var/tmp/scwrl_1660370935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1660370935.pdb # T0287.try7-al4-scwrl 227.52287 cost/residue 228 clashes 0.14451 breaks # iteration 3 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try7-al6 at pool[5] 238.89780 cost/residue, 226 clashes 0.26386 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # Closing gap before 1 next to short segment # generation 1: best score out of 20: T0287.try7-al8 235.14772 cost/residue, 217 clashes 0.26386 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 2 2 / 2 = 1.00000 0.13787 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 3 1 / 4 = 0.25000 0.00828 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ReduceBreak 1 0 0 / 7 = 0.00000 0.00000 ## CloseGap 0 1 1 / 3 = 0.33333 1.04618 ## HealGap 0 0 0 / 7 = 0.00000 0.00000 ## MoveGap 1 2 2 / 7 = 0.28571 0.16135 ## ReduceConstraint 0 0 0 / 10 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 0 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 4 / 26 = 0.15385 1.49342 ## InsertFragment 0 1 1 / 8 = 0.12500 0.01944 ## TwoFragment 0 0 1 / 6 = 0.16667 2.86310 ## CrossOver 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 4 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 5 = 0.00000 0.00000 # generation 2: best score out of 20: T0287.try7-al8 235.14772 cost/residue, 217 clashes 0.26386 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 2 2 / 2 = 1.00000 0.13787 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 1 / 1 = 1.00000 0.00951 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 4 2 / 6 = 0.33333 0.05866 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ReduceBreak 2 1 0 / 13 = 0.00000 0.00000 ## CloseGap 0 1 1 / 6 = 0.16667 0.52309 ## HealGap 0 4 0 / 11 = 0.00000 0.00000 ## MoveGap 1 3 3 / 13 = 0.23077 0.34117 ## ReduceConstraint 0 0 0 / 14 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 4 / 48 = 0.08333 0.80893 ## InsertFragment 0 2 1 / 15 = 0.06667 0.01037 ## TwoFragment 0 0 1 / 23 = 0.04348 0.74690 ## CrossOver 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 10 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 13 = 0.00000 0.00000 # Closing gap before 1 next to short segment # Closing gap before 2 next to short segment # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # generation 3: best score out of 20: T0287.try7-al8 231.85133 cost/residue, 218 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 2 2 / 2 = 1.00000 0.13787 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 1 / 1 = 1.00000 0.00002 ## TweakPhiSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 1 / 1 = 1.00000 0.00113 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 1 / 1 = 1.00000 0.00951 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 4 2 / 7 = 0.28571 0.05028 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 1 1 / 7 = 0.14286 0.01854 ## ReduceBreak 2 1 0 / 19 = 0.00000 0.00000 ## CloseGap 0 7 5 / 19 = 0.26316 0.80536 ## HealGap 0 5 0 / 13 = 0.00000 0.00000 ## MoveGap 1 3 3 / 22 = 0.13636 0.20160 ## ReduceConstraint 0 0 0 / 21 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 2 = 0.50000 1.64790 ## InsertSpecificFragment 0 4 5 / 69 = 0.07246 0.58079 ## InsertFragment 0 3 2 / 18 = 0.11111 0.06266 ## TwoFragment 0 0 1 / 32 = 0.03125 0.53683 ## CrossOver 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 16 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 21 = 0.00000 0.00000 # generation 4: best score out of 20: T0287.try7-al8+T0287-1josA-t06-local-adpstyle1.a2m:1josA 231.42029 cost/residue, 219 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 2 2 / 3 = 0.66667 0.09191 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 2 = 0.50000 0.00001 ## TweakPhiSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 2 1 / 2 = 0.50000 0.00056 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 1 / 1 = 1.00000 0.00951 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 5 4 / 9 = 0.44444 0.06533 ## ClashingRotamer 0 0 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 0 1 1 / 8 = 0.12500 0.01623 ## ReduceBreak 2 1 0 / 22 = 0.00000 0.00000 ## CloseGap 0 9 5 / 25 = 0.20000 0.61208 ## HealGap 0 8 0 / 18 = 0.00000 0.00000 ## MoveGap 1 3 3 / 29 = 0.10345 0.15294 ## ReduceConstraint 0 0 0 / 28 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 5 = 0.20000 0.65916 ## InsertSpecificFragment 0 4 5 / 91 = 0.05495 0.44038 ## InsertFragment 0 3 3 / 25 = 0.12000 0.05217 ## TwoFragment 0 1 1 / 37 = 0.02703 0.46429 ## CrossOver 0 2 1 / 11 = 0.09091 0.03924 ## CrossAndInsert 1 0 0 / 23 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 29 = 0.00000 0.00000 # generation 5: best score out of 20: T0287.try7-al8+T0287-1josA-t06-local-adpstyle1.a2m:1josA 231.42029 cost/residue, 219 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 2 2 / 4 = 0.50000 0.06894 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 3 1 / 3 = 0.33333 0.00038 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 1 / 2 = 0.50000 0.00475 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 5 4 / 11 = 0.36364 0.05345 ## ClashingRotamer 0 1 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 1 1 / 11 = 0.09091 0.01180 ## ReduceBreak 2 1 0 / 29 = 0.00000 0.00000 ## CloseGap 0 11 6 / 30 = 0.20000 0.51076 ## HealGap 0 12 0 / 29 = 0.00000 0.00000 ## MoveGap 1 3 3 / 34 = 0.08824 0.13045 ## ReduceConstraint 0 0 0 / 33 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 10 = 0.10000 0.32958 ## InsertSpecificFragment 0 4 5 / 109 = 0.04587 0.36766 ## InsertFragment 0 3 3 / 30 = 0.10000 0.04347 ## TwoFragment 0 1 1 / 42 = 0.02381 0.40901 ## CrossOver 0 2 1 / 14 = 0.07143 0.03083 ## CrossAndInsert 1 1 0 / 35 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 33 = 0.00000 0.00000 # generation 6: best score out of 20: T0287.try7-al8+T0287-1josA-t06-local-adpstyle1.a2m:1josA 231.42029 cost/residue, 219 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 3 2 / 5 = 0.40000 0.05515 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 3 1 / 3 = 0.33333 0.00038 ## TweakPsiPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 1 / 2 = 0.50000 0.00475 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 6 4 / 12 = 0.33333 0.04900 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 2 1 / 14 = 0.07143 0.00927 ## ReduceBreak 2 1 0 / 34 = 0.00000 0.00000 ## CloseGap 0 12 6 / 41 = 0.14634 0.37372 ## HealGap 0 13 0 / 30 = 0.00000 0.00000 ## MoveGap 1 4 4 / 42 = 0.09524 0.11394 ## ReduceConstraint 0 0 0 / 39 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 14 = 0.07143 0.23541 ## InsertSpecificFragment 0 5 5 / 132 = 0.03788 0.30359 ## InsertFragment 0 3 3 / 34 = 0.08824 0.03836 ## TwoFragment 0 1 1 / 49 = 0.02041 0.35058 ## CrossOver 0 3 1 / 20 = 0.05000 0.02158 ## CrossAndInsert 3 1 0 / 38 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 40 = 0.00000 0.00000 # generation 7: best score out of 20: T0287.try7-al8 231.10701 cost/residue, 241 clashes 0.14000 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 4 2 / 7 = 0.28571 0.03939 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 1 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 4 1 / 4 = 0.25000 0.00028 ## TweakPsiPhiSubtree 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 1 / 2 = 0.50000 0.00475 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 7 5 / 13 = 0.38462 0.06796 ## ClashingRotamer 0 1 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 2 1 / 18 = 0.05556 0.00721 ## ReduceBreak 2 1 0 / 39 = 0.00000 0.00000 ## CloseGap 0 15 6 / 51 = 0.11765 0.30045 ## HealGap 0 15 0 / 34 = 0.00000 0.00000 ## MoveGap 1 4 4 / 45 = 0.08889 0.10634 ## ReduceConstraint 0 0 0 / 47 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 18 = 0.05556 0.18310 ## InsertSpecificFragment 0 6 6 / 153 = 0.03922 0.26587 ## InsertFragment 0 3 3 / 37 = 0.08108 0.03525 ## TwoFragment 0 1 1 / 60 = 0.01667 0.28631 ## CrossOver 0 4 2 / 21 = 0.09524 0.03547 ## CrossAndInsert 3 1 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 50 = 0.00000 0.00000 # generation 8: best score out of 20: T0287.try7-al8 230.54712 cost/residue, 246 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 4 2 / 7 = 0.28571 0.03939 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 1 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 4 1 / 4 = 0.25000 0.00028 ## TweakPsiPhiSubtree 0 5 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 1 / 2 = 0.50000 0.00475 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 6 = 0.16667 0.00004 ## OneRotamer 0 10 7 / 16 = 0.43750 0.10698 ## ClashingRotamer 0 1 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 0 2 1 / 20 = 0.05000 0.00649 ## ReduceBreak 2 1 0 / 44 = 0.00000 0.00000 ## CloseGap 0 16 6 / 58 = 0.10345 0.26418 ## HealGap 0 16 0 / 38 = 0.00000 0.00000 ## MoveGap 1 5 5 / 50 = 0.10000 0.10690 ## ReduceConstraint 0 1 0 / 51 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 21 = 0.04762 0.15694 ## InsertSpecificFragment 0 7 6 / 179 = 0.03352 0.22725 ## InsertFragment 0 3 3 / 44 = 0.06818 0.02964 ## TwoFragment 0 1 1 / 76 = 0.01316 0.22603 ## CrossOver 0 5 2 / 24 = 0.08333 0.03104 ## CrossAndInsert 3 1 0 / 50 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 52 = 0.00000 0.00000 # generation 9: best score out of 20: T0287.try7-al8 230.30800 cost/residue, 210 clashes 0.13526 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 5 = 0.20000 0.00121 ## JiggleSubtree 0 4 2 / 7 = 0.28571 0.03939 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 1 1 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 4 1 / 4 = 0.25000 0.00028 ## TweakPsiPhiSubtree 0 6 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 1 / 4 = 0.25000 0.00238 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 6 = 0.16667 0.00004 ## OneRotamer 0 12 8 / 19 = 0.42105 0.09302 ## ClashingRotamer 0 1 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 0 2 1 / 23 = 0.04348 0.00564 ## ReduceBreak 2 2 1 / 49 = 0.02041 0.00769 ## CloseGap 0 16 6 / 68 = 0.08824 0.22533 ## HealGap 0 18 0 / 43 = 0.00000 0.00000 ## MoveGap 1 5 5 / 54 = 0.09259 0.09899 ## ReduceConstraint 0 1 0 / 57 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 25 = 0.04000 0.13183 ## InsertSpecificFragment 0 10 6 / 204 = 0.02941 0.19940 ## InsertFragment 0 3 3 / 47 = 0.06383 0.02775 ## TwoFragment 0 1 1 / 86 = 0.01163 0.19975 ## CrossOver 0 5 2 / 30 = 0.06667 0.02483 ## CrossAndInsert 3 1 0 / 52 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 55 = 0.00000 0.00000 # generation 10: best score out of 20: T0287.try7-al8 230.13211 cost/residue, 249 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 2 / 6 = 0.33333 0.00140 ## JiggleSubtree 0 5 2 / 8 = 0.25000 0.03447 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 1 1 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 5 2 / 5 = 0.40000 0.00025 ## TweakPsiPhiSubtree 0 6 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 4 1 / 5 = 0.20000 0.00190 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 6 = 0.16667 0.00004 ## OneRotamer 0 15 10 / 22 = 0.45455 0.08599 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 0 3 1 / 25 = 0.04000 0.00519 ## ReduceBreak 2 2 1 / 51 = 0.01961 0.00739 ## CloseGap 0 16 6 / 81 = 0.07407 0.18917 ## HealGap 0 19 0 / 46 = 0.00000 0.00000 ## MoveGap 1 5 5 / 63 = 0.07937 0.08484 ## ReduceConstraint 0 1 0 / 63 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 27 = 0.03704 0.12207 ## InsertSpecificFragment 0 11 6 / 233 = 0.02575 0.17458 ## InsertFragment 0 3 3 / 51 = 0.05882 0.02557 ## TwoFragment 0 1 1 / 89 = 0.01124 0.19302 ## CrossOver 0 5 2 / 32 = 0.06250 0.02328 ## CrossAndInsert 3 2 1 / 58 = 0.01724 0.00620 ## ReduceClash 0 0 0 / 62 = 0.00000 0.00000 # generation 11: best score out of 20: T0287.try7-al8 230.13211 cost/residue, 249 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 2 / 6 = 0.33333 0.00140 ## JiggleSubtree 0 5 2 / 8 = 0.25000 0.03447 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 2 / 5 = 0.40000 0.02064 ## TweakPhiSegment 0 5 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 5 2 / 5 = 0.40000 0.00025 ## TweakPsiPhiSubtree 0 7 0 / 7 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 6 = 0.16667 0.00158 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 2 / 7 = 0.28571 0.00084 ## OneRotamer 0 17 11 / 28 = 0.39286 0.06784 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 0 3 1 / 27 = 0.03704 0.00481 ## ReduceBreak 2 2 1 / 56 = 0.01786 0.00673 ## CloseGap 0 16 6 / 88 = 0.06818 0.17412 ## HealGap 0 23 1 / 53 = 0.01887 0.00781 ## MoveGap 1 5 5 / 71 = 0.07042 0.07528 ## ReduceConstraint 0 1 0 / 66 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 32 = 0.03125 0.10299 ## InsertSpecificFragment 0 11 6 / 256 = 0.02344 0.15890 ## InsertFragment 0 3 3 / 54 = 0.05556 0.02415 ## TwoFragment 0 1 1 / 97 = 0.01031 0.17710 ## CrossOver 0 5 2 / 34 = 0.05882 0.02191 ## CrossAndInsert 3 2 1 / 65 = 0.01538 0.00553 ## ReduceClash 0 0 0 / 68 = 0.00000 0.00000 # generation 12: best score out of 20: T0287.try7-al8 230.11295 cost/residue, 242 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 2 / 6 = 0.33333 0.00140 ## JiggleSubtree 0 5 2 / 8 = 0.25000 0.03447 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 2 / 7 = 0.28571 0.01474 ## TweakPhiSegment 0 5 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 5 2 / 6 = 0.33333 0.00021 ## TweakPsiPhiSubtree 0 8 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 6 = 0.16667 0.00158 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 8 = 0.25000 0.00074 ## OneRotamer 0 20 12 / 31 = 0.38710 0.07349 ## ClashingRotamer 0 1 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 0 3 1 / 28 = 0.03571 0.00464 ## ReduceBreak 2 2 1 / 62 = 0.01613 0.00608 ## CloseGap 0 16 6 / 96 = 0.06250 0.15961 ## HealGap 0 28 1 / 62 = 0.01613 0.00668 ## MoveGap 1 5 5 / 79 = 0.06329 0.06766 ## ReduceConstraint 0 1 0 / 68 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 36 = 0.02778 0.09155 ## InsertSpecificFragment 0 11 6 / 271 = 0.02214 0.15010 ## InsertFragment 0 3 3 / 62 = 0.04839 0.02103 ## TwoFragment 0 1 1 / 105 = 0.00952 0.16361 ## CrossOver 0 5 2 / 37 = 0.05405 0.02013 ## CrossAndInsert 3 2 1 / 72 = 0.01389 0.00499 ## ReduceClash 0 0 0 / 74 = 0.00000 0.00000 # generation 13: best score out of 20: T0287.try7-al8 229.26790 cost/residue, 230 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 8 = 0.37500 0.00222 ## JiggleSubtree 0 5 2 / 9 = 0.22222 0.03064 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 3 / 10 = 0.30000 0.01032 ## TweakPhiSegment 0 5 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 5 2 / 6 = 0.33333 0.00021 ## TweakPsiPhiSubtree 0 8 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 6 = 0.16667 0.00158 ## TweakHbondSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 10 = 0.20000 0.00059 ## OneRotamer 0 22 13 / 34 = 0.38235 0.06854 ## ClashingRotamer 0 1 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 0 4 2 / 33 = 0.06061 0.00611 ## ReduceBreak 2 2 1 / 68 = 0.01471 0.00554 ## CloseGap 0 16 6 / 103 = 0.05825 0.14876 ## HealGap 0 31 3 / 71 = 0.04225 0.01734 ## MoveGap 1 5 5 / 85 = 0.05882 0.06289 ## ReduceConstraint 0 1 0 / 75 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 38 = 0.02632 0.08673 ## InsertSpecificFragment 0 12 7 / 291 = 0.02405 0.14362 ## InsertFragment 0 4 4 / 67 = 0.05970 0.02714 ## TwoFragment 0 1 1 / 114 = 0.00877 0.15069 ## CrossOver 0 6 3 / 42 = 0.07143 0.02058 ## CrossAndInsert 3 2 1 / 77 = 0.01299 0.00467 ## ReduceClash 0 0 0 / 75 = 0.00000 0.00000 # generation 14: best score out of 20: T0287.try7-al8 229.26790 cost/residue, 230 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 8 = 0.37500 0.00222 ## JiggleSubtree 0 5 2 / 11 = 0.18182 0.02507 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 3 / 11 = 0.27273 0.00938 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 5 2 / 6 = 0.33333 0.00021 ## TweakPsiPhiSubtree 0 8 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 6 = 0.16667 0.00158 ## TweakHbondSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 11 = 0.18182 0.00054 ## OneRotamer 0 22 13 / 36 = 0.36111 0.06473 ## ClashingRotamer 0 1 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 0 4 2 / 34 = 0.05882 0.00593 ## ReduceBreak 2 2 1 / 75 = 0.01333 0.00503 ## CloseGap 0 16 6 / 108 = 0.05556 0.14188 ## HealGap 0 38 5 / 81 = 0.06173 0.02557 ## MoveGap 1 5 5 / 90 = 0.05556 0.05939 ## ReduceConstraint 0 1 0 / 80 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 44 = 0.02273 0.07490 ## InsertSpecificFragment 0 14 9 / 313 = 0.02875 0.13462 ## InsertFragment 0 4 4 / 71 = 0.05634 0.02561 ## TwoFragment 0 1 1 / 125 = 0.00800 0.13743 ## CrossOver 0 8 3 / 46 = 0.06522 0.01879 ## CrossAndInsert 3 2 1 / 82 = 0.01220 0.00438 ## ReduceClash 0 0 0 / 81 = 0.00000 0.00000 # generation 15: best score out of 20: T0287.try7-al8 229.26790 cost/residue, 230 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 8 = 0.37500 0.00222 ## JiggleSubtree 0 5 2 / 11 = 0.18182 0.02507 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 11 3 / 13 = 0.23077 0.00794 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 6 2 / 7 = 0.28571 0.00018 ## TweakPsiPhiSubtree 0 8 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 6 = 0.16667 0.00158 ## TweakHbondSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 11 = 0.18182 0.00054 ## OneRotamer 0 24 13 / 39 = 0.33333 0.05975 ## ClashingRotamer 0 1 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 0 4 2 / 36 = 0.05556 0.00560 ## ReduceBreak 2 2 1 / 80 = 0.01250 0.00471 ## CloseGap 0 16 6 / 115 = 0.05217 0.13324 ## HealGap 0 45 5 / 90 = 0.05556 0.02301 ## MoveGap 1 5 5 / 99 = 0.05051 0.05399 ## ReduceConstraint 0 1 0 / 82 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 49 = 0.02041 0.06726 ## InsertSpecificFragment 0 14 9 / 339 = 0.02655 0.12429 ## InsertFragment 0 4 4 / 81 = 0.04938 0.02245 ## TwoFragment 0 1 1 / 135 = 0.00741 0.12725 ## CrossOver 0 8 3 / 48 = 0.06250 0.01801 ## CrossAndInsert 3 2 1 / 84 = 0.01190 0.00428 ## ReduceClash 0 0 0 / 84 = 0.00000 0.00000 # generation 16: best score out of 20: T0287.try7-al8 229.26790 cost/residue, 230 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 3 / 11 = 0.27273 0.00161 ## JiggleSubtree 0 5 2 / 13 = 0.15385 0.02121 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 11 3 / 13 = 0.23077 0.00794 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 6 2 / 8 = 0.25000 0.00015 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 6 = 0.16667 0.00158 ## TweakHbondSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 11 = 0.18182 0.00054 ## OneRotamer 0 28 13 / 46 = 0.28261 0.05066 ## ClashingRotamer 0 1 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 0 5 2 / 40 = 0.05000 0.00504 ## ReduceBreak 2 2 1 / 89 = 0.01124 0.00424 ## CloseGap 0 16 6 / 125 = 0.04800 0.12258 ## HealGap 0 45 5 / 93 = 0.05376 0.02227 ## MoveGap 1 5 5 / 102 = 0.04902 0.05240 ## ReduceConstraint 0 1 0 / 88 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 51 = 0.01961 0.06462 ## InsertSpecificFragment 0 16 9 / 359 = 0.02507 0.11737 ## InsertFragment 0 4 4 / 81 = 0.04938 0.02245 ## TwoFragment 0 1 1 / 143 = 0.00699 0.12013 ## CrossOver 0 8 3 / 51 = 0.05882 0.01695 ## CrossAndInsert 3 2 1 / 90 = 0.01111 0.00399 ## ReduceClash 0 0 0 / 89 = 0.00000 0.00000 # generation 17: best score out of 20: T0287.try7-al8 228.85353 cost/residue, 229 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 3 / 14 = 0.21429 0.00127 ## JiggleSubtree 0 6 2 / 17 = 0.11765 0.01622 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 11 3 / 13 = 0.23077 0.00794 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 7 3 / 9 = 0.33333 0.00089 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 6 = 0.16667 0.00158 ## TweakHbondSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 12 = 0.16667 0.00049 ## OneRotamer 0 32 15 / 51 = 0.29412 0.05896 ## ClashingRotamer 0 1 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 0 5 2 / 44 = 0.04545 0.00458 ## ReduceBreak 2 3 2 / 93 = 0.02151 0.00798 ## CloseGap 0 16 6 / 133 = 0.04511 0.11521 ## HealGap 0 46 5 / 96 = 0.05208 0.02157 ## MoveGap 1 5 5 / 111 = 0.04505 0.04816 ## ReduceConstraint 0 1 0 / 92 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 57 = 0.01754 0.05782 ## InsertSpecificFragment 0 16 9 / 386 = 0.02332 0.10916 ## InsertFragment 0 4 4 / 84 = 0.04762 0.02164 ## TwoFragment 0 1 1 / 147 = 0.00680 0.11686 ## CrossOver 0 8 3 / 53 = 0.05660 0.01631 ## CrossAndInsert 3 2 1 / 94 = 0.01064 0.00382 ## ReduceClash 0 0 0 / 92 = 0.00000 0.00000 # generation 18: best score out of 20: T0287.try7-al8 228.84697 cost/residue, 229 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 15 = 0.20000 0.00118 ## JiggleSubtree 0 6 2 / 17 = 0.11765 0.01622 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 3 / 14 = 0.21429 0.00737 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 8 3 / 10 = 0.30000 0.00080 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 7 = 0.14286 0.00136 ## TweakHbondSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 12 = 0.16667 0.00049 ## OneRotamer 0 36 18 / 58 = 0.31034 0.05372 ## ClashingRotamer 0 1 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 0 5 2 / 46 = 0.04348 0.00438 ## ReduceBreak 2 3 2 / 98 = 0.02041 0.00758 ## CloseGap 0 16 6 / 143 = 0.04196 0.10715 ## HealGap 0 49 5 / 108 = 0.04630 0.01917 ## MoveGap 1 5 5 / 116 = 0.04310 0.04608 ## ReduceConstraint 0 1 0 / 96 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 59 = 0.01695 0.05586 ## InsertSpecificFragment 0 16 9 / 405 = 0.02222 0.10404 ## InsertFragment 0 4 4 / 89 = 0.04494 0.02043 ## TwoFragment 0 1 1 / 154 = 0.00649 0.11155 ## CrossOver 1 9 3 / 59 = 0.05085 0.01465 ## CrossAndInsert 3 2 1 / 98 = 0.01020 0.00367 ## ReduceClash 0 0 0 / 97 = 0.00000 0.00000 # generation 19: best score out of 20: T0287.try7-al8 228.84697 cost/residue, 229 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 15 = 0.20000 0.00118 ## JiggleSubtree 0 7 2 / 19 = 0.10526 0.01451 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 13 3 / 15 = 0.20000 0.00688 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 3 1 / 5 = 0.20000 0.00093 ## TweakPsiSegment 0 9 3 / 11 = 0.27273 0.00073 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 1 / 7 = 0.14286 0.00136 ## TweakHbondSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 12 = 0.16667 0.00049 ## OneRotamer 0 41 19 / 63 = 0.30159 0.04957 ## ClashingRotamer 0 1 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 0 5 2 / 46 = 0.04348 0.00438 ## ReduceBreak 2 3 2 / 106 = 0.01887 0.00700 ## CloseGap 0 16 6 / 153 = 0.03922 0.10015 ## HealGap 0 52 5 / 116 = 0.04310 0.01785 ## MoveGap 1 5 5 / 121 = 0.04132 0.04418 ## ReduceConstraint 0 1 0 / 97 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 62 = 0.01613 0.05316 ## InsertSpecificFragment 0 16 9 / 430 = 0.02093 0.09799 ## InsertFragment 0 4 4 / 92 = 0.04348 0.01976 ## TwoFragment 0 1 1 / 162 = 0.00617 0.10604 ## CrossOver 1 9 3 / 60 = 0.05000 0.01440 ## CrossAndInsert 3 2 1 / 104 = 0.00962 0.00346 ## ReduceClash 0 0 0 / 102 = 0.00000 0.00000 # generation 20: best score out of 20: T0287.try7-al8 228.84697 cost/residue, 229 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 16 = 0.18750 0.00111 ## JiggleSubtree 0 7 2 / 19 = 0.10526 0.01451 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 13 3 / 15 = 0.20000 0.00688 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 4 2 / 7 = 0.28571 0.00114 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00057 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 9 = 0.11111 0.00106 ## TweakHbondSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 12 = 0.16667 0.00049 ## OneRotamer 0 44 19 / 66 = 0.28788 0.04732 ## ClashingRotamer 0 1 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 0 5 2 / 46 = 0.04348 0.00438 ## ReduceBreak 2 3 2 / 111 = 0.01802 0.00669 ## CloseGap 0 16 6 / 163 = 0.03681 0.09400 ## HealGap 0 57 5 / 127 = 0.03937 0.01631 ## MoveGap 1 5 5 / 125 = 0.04000 0.04276 ## ReduceConstraint 0 1 0 / 98 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 62 = 0.01613 0.05316 ## InsertSpecificFragment 0 16 9 / 450 = 0.02000 0.09363 ## InsertFragment 0 4 4 / 97 = 0.04124 0.01874 ## TwoFragment 0 1 1 / 172 = 0.00581 0.09988 ## CrossOver 2 9 3 / 64 = 0.04688 0.01350 ## CrossAndInsert 4 2 1 / 113 = 0.00885 0.00318 ## ReduceClash 0 0 0 / 107 = 0.00000 0.00000 # generation 21: best score out of 20: T0287.try7-al8 228.84697 cost/residue, 229 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 4 / 17 = 0.23529 0.00131 ## JiggleSubtree 0 8 2 / 22 = 0.09091 0.01253 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 0 15 3 / 17 = 0.17647 0.00607 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 6 3 / 9 = 0.33333 0.00107 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00057 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 9 = 0.11111 0.00106 ## TweakHbondSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 2 / 13 = 0.15385 0.00045 ## OneRotamer 0 45 19 / 68 = 0.27941 0.04592 ## ClashingRotamer 0 1 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 0 5 2 / 49 = 0.04082 0.00411 ## ReduceBreak 2 3 2 / 117 = 0.01709 0.00635 ## CloseGap 0 16 6 / 172 = 0.03488 0.08909 ## HealGap 0 59 5 / 131 = 0.03817 0.01581 ## MoveGap 1 5 5 / 134 = 0.03731 0.03989 ## ReduceConstraint 0 1 0 / 102 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 62 = 0.01613 0.05316 ## InsertSpecificFragment 0 16 9 / 477 = 0.01887 0.08833 ## InsertFragment 0 4 4 / 102 = 0.03922 0.01782 ## TwoFragment 0 1 1 / 176 = 0.00568 0.09761 ## CrossOver 2 10 3 / 68 = 0.04412 0.01271 ## CrossAndInsert 4 2 1 / 117 = 0.00855 0.00307 ## ReduceClash 0 0 0 / 111 = 0.00000 0.00000 # generation 22: best score out of 20: T0287.try7-al8 228.59929 cost/residue, 222 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 5 / 19 = 0.26316 0.00187 ## JiggleSubtree 0 8 2 / 24 = 0.08333 0.01149 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 0 17 3 / 19 = 0.15789 0.00543 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 6 3 / 9 = 0.33333 0.00107 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00057 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 9 = 0.11111 0.00106 ## TweakHbondSegment 0 6 1 / 7 = 0.14286 0.01915 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 2 / 14 = 0.14286 0.00042 ## OneRotamer 0 49 20 / 73 = 0.27397 0.04626 ## ClashingRotamer 0 1 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 0 6 2 / 53 = 0.03774 0.00380 ## ReduceBreak 2 3 2 / 125 = 0.01600 0.00594 ## CloseGap 0 16 6 / 182 = 0.03297 0.08419 ## HealGap 0 60 5 / 137 = 0.03650 0.01512 ## MoveGap 1 5 5 / 143 = 0.03497 0.03738 ## ReduceConstraint 0 1 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 66 = 0.01515 0.04994 ## InsertSpecificFragment 0 16 9 / 495 = 0.01818 0.08512 ## InsertFragment 0 4 4 / 106 = 0.03774 0.01715 ## TwoFragment 0 1 1 / 186 = 0.00538 0.09236 ## CrossOver 2 10 3 / 70 = 0.04286 0.01235 ## CrossAndInsert 4 3 1 / 120 = 0.00833 0.00299 ## ReduceClash 0 0 0 / 113 = 0.00000 0.00000 # generation 23: best score out of 20: T0287.try7-al8 228.59929 cost/residue, 222 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 20 = 0.25000 0.00177 ## JiggleSubtree 0 8 2 / 25 = 0.08000 0.01103 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 18 3 / 20 = 0.15000 0.00516 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 7 4 / 10 = 0.40000 0.00192 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00057 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 9 = 0.11111 0.00106 ## TweakHbondSegment 0 9 1 / 16 = 0.06250 0.00838 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 2 / 15 = 0.13333 0.00039 ## OneRotamer 0 53 20 / 83 = 0.24096 0.04069 ## ClashingRotamer 0 1 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 0 6 2 / 54 = 0.03704 0.00373 ## ReduceBreak 2 3 2 / 129 = 0.01550 0.00576 ## CloseGap 0 16 6 / 188 = 0.03191 0.08150 ## HealGap 0 61 5 / 141 = 0.03546 0.01469 ## MoveGap 1 5 5 / 151 = 0.03311 0.03540 ## ReduceConstraint 0 1 0 / 113 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 70 = 0.01429 0.04708 ## InsertSpecificFragment 0 16 9 / 512 = 0.01758 0.08229 ## InsertFragment 0 5 4 / 110 = 0.03636 0.01653 ## TwoFragment 0 1 1 / 189 = 0.00529 0.09089 ## CrossOver 2 10 3 / 76 = 0.03947 0.01137 ## CrossAndInsert 4 3 1 / 121 = 0.00826 0.00297 ## ReduceClash 0 0 0 / 116 = 0.00000 0.00000 # generation 24: best score out of 20: T0287.try7-al8 228.56966 cost/residue, 227 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 21 = 0.23810 0.00169 ## JiggleSubtree 0 8 2 / 26 = 0.07692 0.01061 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 19 3 / 21 = 0.14286 0.00491 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 7 4 / 10 = 0.40000 0.00192 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00057 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 10 = 0.10000 0.00095 ## TweakHbondSegment 0 10 1 / 18 = 0.05556 0.00745 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 2 / 15 = 0.13333 0.00039 ## OneRotamer 0 56 21 / 86 = 0.24419 0.04252 ## ClashingRotamer 0 1 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 0 7 2 / 56 = 0.03571 0.00360 ## ReduceBreak 2 3 2 / 133 = 0.01504 0.00558 ## CloseGap 0 16 6 / 199 = 0.03015 0.07700 ## HealGap 0 64 5 / 147 = 0.03401 0.01409 ## MoveGap 1 5 5 / 156 = 0.03205 0.03426 ## ReduceConstraint 0 1 0 / 120 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 76 = 0.01316 0.04337 ## InsertSpecificFragment 0 17 9 / 534 = 0.01685 0.07890 ## InsertFragment 0 5 4 / 113 = 0.03540 0.01609 ## TwoFragment 0 1 1 / 198 = 0.00505 0.08676 ## CrossOver 2 11 4 / 81 = 0.04938 0.01176 ## CrossAndInsert 4 4 1 / 126 = 0.00794 0.00285 ## ReduceClash 0 0 0 / 119 = 0.00000 0.00000 # generation 25: best score out of 20: T0287.try7-al8 226.51714 cost/residue, 230 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 5 / 23 = 0.21739 0.00154 ## JiggleSubtree 0 8 2 / 27 = 0.07407 0.01021 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 3 / 22 = 0.13636 0.00469 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 7 4 / 10 = 0.40000 0.00192 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00057 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 11 = 0.09091 0.00086 ## TweakHbondSegment 0 10 1 / 19 = 0.05263 0.00706 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 2 / 15 = 0.13333 0.00039 ## OneRotamer 0 61 21 / 93 = 0.22581 0.03932 ## ClashingRotamer 0 1 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 0 7 2 / 56 = 0.03571 0.00360 ## ReduceBreak 2 3 2 / 136 = 0.01471 0.00546 ## CloseGap 0 16 6 / 205 = 0.02927 0.07474 ## HealGap 0 66 5 / 153 = 0.03268 0.01354 ## MoveGap 1 5 5 / 164 = 0.03049 0.03259 ## ReduceConstraint 0 1 0 / 124 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 80 = 0.01250 0.04120 ## InsertSpecificFragment 0 18 10 / 555 = 0.01802 0.07990 ## InsertFragment 0 6 4 / 119 = 0.03361 0.01528 ## TwoFragment 0 1 1 / 205 = 0.00488 0.08380 ## CrossOver 2 12 4 / 86 = 0.04651 0.01108 ## CrossAndInsert 4 4 1 / 128 = 0.00781 0.00281 ## ReduceClash 0 0 0 / 127 = 0.00000 0.00000 # generation 26: best score out of 20: T0287.try7-al8 226.08293 cost/residue, 227 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 5 / 23 = 0.21739 0.00154 ## JiggleSubtree 0 8 2 / 27 = 0.07407 0.01021 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 3 / 24 = 0.12500 0.00430 ## TweakPhiSegment 0 6 1 / 10 = 0.10000 0.00000 ## TweakPsiSubtree 1 11 6 / 14 = 0.42857 0.00141 ## TweakPsiSegment 0 12 3 / 15 = 0.20000 0.00054 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 11 = 0.09091 0.00086 ## TweakHbondSegment 0 12 1 / 22 = 0.04545 0.00609 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 2 / 15 = 0.13333 0.00039 ## OneRotamer 0 62 22 / 101 = 0.21782 0.04050 ## ClashingRotamer 0 1 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 0 7 2 / 58 = 0.03448 0.00348 ## ReduceBreak 2 3 2 / 139 = 0.01439 0.00534 ## CloseGap 0 16 6 / 211 = 0.02844 0.07262 ## HealGap 0 68 5 / 159 = 0.03145 0.01302 ## MoveGap 1 5 5 / 170 = 0.02941 0.03144 ## ReduceConstraint 0 1 0 / 127 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 84 = 0.01190 0.03924 ## InsertSpecificFragment 0 18 10 / 581 = 0.01721 0.07632 ## InsertFragment 0 6 4 / 123 = 0.03252 0.01478 ## TwoFragment 0 1 1 / 212 = 0.00472 0.08103 ## CrossOver 2 12 4 / 88 = 0.04545 0.01082 ## CrossAndInsert 4 4 1 / 131 = 0.00763 0.00274 ## ReduceClash 0 0 0 / 132 = 0.00000 0.00000 # generation 27: best score out of 20: T0287.try7-al8 226.08293 cost/residue, 227 clashes 0.13318 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 5 / 23 = 0.21739 0.00154 ## JiggleSubtree 0 9 3 / 28 = 0.10714 0.01939 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 3 / 24 = 0.12500 0.00430 ## TweakPhiSegment 0 6 1 / 10 = 0.10000 0.00000 ## TweakPsiSubtree 1 11 6 / 15 = 0.40000 0.00131 ## TweakPsiSegment 0 12 3 / 15 = 0.20000 0.00054 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 11 = 0.09091 0.00086 ## TweakHbondSegment 0 12 1 / 26 = 0.03846 0.00516 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 2 / 15 = 0.13333 0.00039 ## OneRotamer 0 66 23 / 109 = 0.21101 0.03817 ## ClashingRotamer 0 1 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 0 7 2 / 59 = 0.03390 0.00342 ## ReduceBreak 2 3 2 / 148 = 0.01351 0.00502 ## CloseGap 0 16 6 / 216 = 0.02778 0.07094 ## HealGap 0 73 5 / 165 = 0.03030 0.01255 ## MoveGap 1 5 5 / 175 = 0.02857 0.03054 ## ReduceConstraint 0 1 0 / 131 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 84 = 0.01190 0.03924 ## InsertSpecificFragment 0 18 10 / 603 = 0.01658 0.07354 ## InsertFragment 0 6 4 / 125 = 0.03200 0.01455 ## TwoFragment 0 1 1 / 226 = 0.00442 0.07601 ## CrossOver 2 14 5 / 96 = 0.05208 0.01681 ## CrossAndInsert 4 5 2 / 135 = 0.01481 0.01382 ## ReduceClash 0 0 0 / 134 = 0.00000 0.00000 # generation 28: best score out of 20: T0287.try7-al8 225.91058 cost/residue, 221 clashes 0.14125 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 5 / 23 = 0.21739 0.00154 ## JiggleSubtree 0 10 3 / 34 = 0.08824 0.01597 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 3 / 24 = 0.12500 0.00430 ## TweakPhiSegment 0 7 1 / 13 = 0.07692 0.00000 ## TweakPsiSubtree 1 13 6 / 18 = 0.33333 0.00109 ## TweakPsiSegment 0 13 4 / 16 = 0.25000 0.00051 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 11 = 0.09091 0.00086 ## TweakHbondSegment 0 12 1 / 27 = 0.03704 0.00497 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 2 / 16 = 0.12500 0.00037 ## OneRotamer 0 69 23 / 116 = 0.19828 0.03587 ## ClashingRotamer 0 1 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 0 7 2 / 59 = 0.03390 0.00342 ## ReduceBreak 2 3 2 / 152 = 0.01316 0.00489 ## CloseGap 0 16 6 / 223 = 0.02691 0.06871 ## HealGap 0 74 5 / 170 = 0.02941 0.01218 ## MoveGap 1 5 5 / 180 = 0.02778 0.02970 ## ReduceConstraint 0 1 0 / 134 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 86 = 0.01163 0.03832 ## InsertSpecificFragment 0 18 10 / 616 = 0.01623 0.07199 ## InsertFragment 0 6 4 / 131 = 0.03053 0.01388 ## TwoFragment 0 1 1 / 232 = 0.00431 0.07405 ## CrossOver 2 15 6 / 103 = 0.05825 0.02114 ## CrossAndInsert 5 5 2 / 150 = 0.01333 0.01244 ## ReduceClash 0 1 1 / 138 = 0.00725 0.00125 # generation 29: best score out of 20: T0287.try7-al8 225.37709 cost/residue, 209 clashes 0.14517 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 5 / 23 = 0.21739 0.00154 ## JiggleSubtree 0 11 4 / 37 = 0.10811 0.02909 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 3 / 25 = 0.12000 0.00413 ## TweakPhiSegment 0 7 1 / 13 = 0.07692 0.00000 ## TweakPsiSubtree 1 14 6 / 19 = 0.31579 0.00104 ## TweakPsiSegment 0 14 4 / 17 = 0.23529 0.00048 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 11 = 0.09091 0.00086 ## TweakHbondSegment 0 12 1 / 29 = 0.03448 0.00462 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 2 / 17 = 0.11765 0.00035 ## OneRotamer 0 74 26 / 127 = 0.20472 0.03952 ## ClashingRotamer 0 1 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 0 7 2 / 61 = 0.03279 0.00330 ## ReduceBreak 2 3 2 / 154 = 0.01299 0.00482 ## CloseGap 0 16 6 / 226 = 0.02655 0.06780 ## HealGap 0 74 5 / 172 = 0.02907 0.01204 ## MoveGap 1 5 5 / 182 = 0.02747 0.02937 ## ReduceConstraint 0 1 0 / 141 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 89 = 0.01124 0.03703 ## InsertSpecificFragment 0 18 10 / 639 = 0.01565 0.06939 ## InsertFragment 0 6 4 / 133 = 0.03008 0.01367 ## TwoFragment 0 1 1 / 238 = 0.00420 0.07218 ## CrossOver 2 18 8 / 116 = 0.06897 0.02646 ## CrossAndInsert 5 5 2 / 156 = 0.01282 0.01196 ## ReduceClash 0 1 1 / 144 = 0.00694 0.00120 # generation 30: best score out of 20: T0287.try7-al8 225.37709 cost/residue, 209 clashes 0.14517 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 5 / 24 = 0.20833 0.00148 ## JiggleSubtree 0 12 4 / 46 = 0.08696 0.02340 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 3 / 25 = 0.12000 0.00413 ## TweakPhiSegment 0 7 1 / 13 = 0.07692 0.00000 ## TweakPsiSubtree 1 14 6 / 19 = 0.31579 0.00104 ## TweakPsiSegment 0 15 4 / 18 = 0.22222 0.00045 ## TweakPsiPhiSubtree 0 9 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 12 = 0.08333 0.00079 ## TweakHbondSegment 0 12 1 / 32 = 0.03125 0.00419 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 2 / 18 = 0.11111 0.00033 ## OneRotamer 0 79 29 / 135 = 0.21481 0.04077 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 1 7 2 / 62 = 0.03226 0.00325 ## ReduceBreak 2 3 2 / 158 = 0.01266 0.00470 ## CloseGap 0 16 6 / 231 = 0.02597 0.06633 ## HealGap 0 75 5 / 177 = 0.02825 0.01170 ## MoveGap 1 5 5 / 186 = 0.02688 0.02874 ## ReduceConstraint 0 1 0 / 143 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 90 = 0.01111 0.03662 ## InsertSpecificFragment 0 18 10 / 661 = 0.01513 0.06709 ## InsertFragment 0 6 4 / 136 = 0.02941 0.01337 ## TwoFragment 0 1 1 / 245 = 0.00408 0.07012 ## CrossOver 3 19 8 / 127 = 0.06299 0.02417 ## CrossAndInsert 6 5 2 / 160 = 0.01250 0.01166 ## ReduceClash 0 1 1 / 147 = 0.00680 0.00117 # generation 31: best score out of 20: T0287.try7-al8 225.15741 cost/residue, 209 clashes 0.14517 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 5 / 24 = 0.20833 0.00148 ## JiggleSubtree 0 12 4 / 50 = 0.08000 0.02153 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 3 / 26 = 0.11538 0.00397 ## TweakPhiSegment 0 9 2 / 15 = 0.13333 0.00000 ## TweakPsiSubtree 1 14 6 / 19 = 0.31579 0.00104 ## TweakPsiSegment 0 15 4 / 19 = 0.21053 0.00043 ## TweakPsiPhiSubtree 0 10 1 / 11 = 0.09091 0.00091 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 12 = 0.08333 0.00079 ## TweakHbondSegment 0 13 1 / 33 = 0.03030 0.00406 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 2 / 18 = 0.11111 0.00033 ## OneRotamer 0 86 33 / 148 = 0.22297 0.04217 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 1 7 2 / 63 = 0.03175 0.00320 ## ReduceBreak 2 3 2 / 161 = 0.01242 0.00461 ## CloseGap 0 16 6 / 237 = 0.02532 0.06465 ## HealGap 0 76 5 / 183 = 0.02732 0.01132 ## MoveGap 1 5 5 / 190 = 0.02632 0.02813 ## ReduceConstraint 0 1 0 / 146 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 93 = 0.01075 0.03544 ## InsertSpecificFragment 0 18 10 / 683 = 0.01464 0.06492 ## InsertFragment 0 6 4 / 141 = 0.02837 0.01289 ## TwoFragment 0 1 1 / 250 = 0.00400 0.06871 ## CrossOver 3 19 8 / 132 = 0.06061 0.02325 ## CrossAndInsert 6 5 2 / 171 = 0.01170 0.01091 ## ReduceClash 0 1 1 / 148 = 0.00676 0.00116 # Closing gap before 146 without wiggling. # generation 32: best score out of 20: T0287.try7-al8 225.15741 cost/residue, 209 clashes 0.14517 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 6 / 26 = 0.23077 0.00153 ## JiggleSubtree 0 13 5 / 57 = 0.08772 0.02047 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 3 / 26 = 0.11538 0.00397 ## TweakPhiSegment 0 10 2 / 17 = 0.11765 0.00000 ## TweakPsiSubtree 1 16 7 / 21 = 0.33333 0.00095 ## TweakPsiSegment 0 15 4 / 21 = 0.19048 0.00039 ## TweakPsiPhiSubtree 0 11 2 / 12 = 0.16667 0.00386 ## TweakPsiPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 12 = 0.08333 0.00079 ## TweakHbondSegment 0 13 1 / 33 = 0.03030 0.00406 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 2 / 19 = 0.10526 0.00031 ## OneRotamer 0 90 33 / 155 = 0.21290 0.04027 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 1 7 2 / 67 = 0.02985 0.00301 ## ReduceBreak 2 3 2 / 166 = 0.01205 0.00447 ## CloseGap 0 16 6 / 244 = 0.02459 0.06280 ## HealGap 0 77 5 / 186 = 0.02688 0.01113 ## MoveGap 1 5 5 / 196 = 0.02551 0.02727 ## ReduceConstraint 0 1 0 / 150 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 96 = 0.01042 0.03433 ## InsertSpecificFragment 0 18 10 / 696 = 0.01437 0.06371 ## InsertFragment 0 6 4 / 147 = 0.02721 0.01237 ## TwoFragment 0 1 1 / 253 = 0.00395 0.06790 ## CrossOver 3 19 8 / 137 = 0.05839 0.02240 ## CrossAndInsert 6 5 2 / 181 = 0.01105 0.01031 ## ReduceClash 0 1 1 / 151 = 0.00662 0.00114 # generation 33: best score out of 20: T0287.try7-al8 225.15741 cost/residue, 209 clashes 0.14517 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 6 / 28 = 0.21429 0.00142 ## JiggleSubtree 0 14 5 / 60 = 0.08333 0.01945 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 22 3 / 27 = 0.11111 0.00382 ## TweakPhiSegment 0 10 2 / 17 = 0.11765 0.00000 ## TweakPsiSubtree 1 16 7 / 21 = 0.33333 0.00095 ## TweakPsiSegment 0 15 4 / 21 = 0.19048 0.00039 ## TweakPsiPhiSubtree 0 14 4 / 15 = 0.26667 0.00878 ## TweakPsiPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 12 = 0.08333 0.00079 ## TweakHbondSegment 0 13 1 / 33 = 0.03030 0.00406 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 2 / 19 = 0.10526 0.00031 ## OneRotamer 0 91 34 / 160 = 0.21250 0.03902 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 1 8 2 / 70 = 0.02857 0.00288 ## ReduceBreak 2 4 2 / 173 = 0.01156 0.00429 ## CloseGap 0 16 6 / 249 = 0.02410 0.06154 ## HealGap 0 77 5 / 190 = 0.02632 0.01090 ## MoveGap 1 5 5 / 205 = 0.02439 0.02607 ## ReduceConstraint 0 1 0 / 150 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 99 = 0.01010 0.03329 ## InsertSpecificFragment 0 18 10 / 711 = 0.01406 0.06237 ## InsertFragment 0 6 4 / 153 = 0.02614 0.01188 ## TwoFragment 0 1 1 / 262 = 0.00382 0.06557 ## CrossOver 3 21 8 / 143 = 0.05594 0.02146 ## CrossAndInsert 6 5 2 / 192 = 0.01042 0.00972 ## ReduceClash 0 1 1 / 155 = 0.00645 0.00111 # generation 34: best score out of 20: T0287.try7-al8 225.15741 cost/residue, 209 clashes 0.14517 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 6 / 29 = 0.20690 0.00137 ## JiggleSubtree 0 15 5 / 66 = 0.07576 0.01768 ## JiggleSegment 0 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 22 3 / 27 = 0.11111 0.00382 ## TweakPhiSegment 0 10 2 / 17 = 0.11765 0.00000 ## TweakPsiSubtree 1 16 7 / 21 = 0.33333 0.00095 ## TweakPsiSegment 0 15 4 / 21 = 0.19048 0.00039 ## TweakPsiPhiSubtree 0 20 4 / 24 = 0.16667 0.00549 ## TweakPsiPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 12 = 0.08333 0.00079 ## TweakHbondSegment 0 13 1 / 33 = 0.03030 0.00406 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 2 / 19 = 0.10526 0.00031 ## OneRotamer 0 93 36 / 168 = 0.21429 0.03828 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 1 8 2 / 72 = 0.02778 0.00280 ## ReduceBreak 2 4 2 / 182 = 0.01099 0.00408 ## CloseGap 0 16 6 / 265 = 0.02264 0.05782 ## HealGap 0 79 5 / 193 = 0.02591 0.01073 ## MoveGap 1 5 5 / 205 = 0.02439 0.02607 ## ReduceConstraint 0 1 0 / 151 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 101 = 0.00990 0.03263 ## InsertSpecificFragment 0 18 10 / 728 = 0.01374 0.06091 ## InsertFragment 0 6 4 / 157 = 0.02548 0.01158 ## TwoFragment 0 1 1 / 266 = 0.00376 0.06458 ## CrossOver 3 21 8 / 150 = 0.05333 0.02046 ## CrossAndInsert 6 5 2 / 196 = 0.01020 0.00952 ## ReduceClash 0 1 1 / 156 = 0.00641 0.00110 # generation 35: best score out of 20: T0287.try7-al8 224.91565 cost/residue, 204 clashes 0.16317 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 6 / 29 = 0.20690 0.00137 ## JiggleSubtree 0 16 5 / 70 = 0.07143 0.01667 ## JiggleSegment 0 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 22 3 / 27 = 0.11111 0.00382 ## TweakPhiSegment 0 11 2 / 18 = 0.11111 0.00000 ## TweakPsiSubtree 1 16 7 / 21 = 0.33333 0.00095 ## TweakPsiSegment 0 16 4 / 22 = 0.18182 0.00037 ## TweakPsiPhiSubtree 0 21 4 / 25 = 0.16000 0.00527 ## TweakPsiPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 1 / 12 = 0.08333 0.00079 ## TweakHbondSegment 0 14 1 / 34 = 0.02941 0.00394 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 2 / 20 = 0.10000 0.00029 ## OneRotamer 0 95 37 / 181 = 0.20442 0.03714 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 1 8 2 / 72 = 0.02778 0.00280 ## ReduceBreak 2 4 2 / 188 = 0.01064 0.00395 ## CloseGap 0 16 6 / 273 = 0.02198 0.05613 ## HealGap 0 82 5 / 198 = 0.02525 0.01046 ## MoveGap 1 5 5 / 209 = 0.02392 0.02558 ## ReduceConstraint 0 1 0 / 156 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 108 = 0.00926 0.03052 ## InsertSpecificFragment 0 18 10 / 743 = 0.01346 0.05968 ## InsertFragment 0 6 4 / 158 = 0.02532 0.01151 ## TwoFragment 0 1 1 / 269 = 0.00372 0.06386 ## CrossOver 3 21 8 / 161 = 0.04969 0.01906 ## CrossAndInsert 6 5 2 / 203 = 0.00985 0.00919 ## ReduceClash 0 2 2 / 160 = 0.01250 0.00289 # generation 36: best score out of 20: T0287.try7-al8 224.58038 cost/residue, 198 clashes 0.16317 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 7 / 33 = 0.21212 0.00201 ## JiggleSubtree 0 16 5 / 80 = 0.06250 0.01458 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 0 22 3 / 27 = 0.11111 0.00382 ## TweakPhiSegment 0 13 2 / 20 = 0.10000 0.00000 ## TweakPsiSubtree 1 16 7 / 22 = 0.31818 0.00090 ## TweakPsiSegment 0 16 4 / 22 = 0.18182 0.00037 ## TweakPsiPhiSubtree 0 22 4 / 26 = 0.15385 0.00506 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 1 6 1 / 12 = 0.08333 0.00079 ## TweakHbondSegment 0 15 1 / 35 = 0.02857 0.00383 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 2 / 20 = 0.10000 0.00029 ## OneRotamer 0 102 40 / 194 = 0.20619 0.03761 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 75 = 0.02667 0.00269 ## ReduceBreak 2 4 2 / 192 = 0.01042 0.00387 ## CloseGap 0 16 6 / 281 = 0.02135 0.05453 ## HealGap 0 82 5 / 199 = 0.02513 0.01041 ## MoveGap 1 5 5 / 214 = 0.02336 0.02498 ## ReduceConstraint 0 1 0 / 159 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 110 = 0.00909 0.02996 ## InsertSpecificFragment 0 19 11 / 757 = 0.01453 0.05876 ## InsertFragment 0 6 4 / 161 = 0.02484 0.01129 ## TwoFragment 0 1 1 / 277 = 0.00361 0.06202 ## CrossOver 3 21 8 / 168 = 0.04762 0.01827 ## CrossAndInsert 6 5 2 / 204 = 0.00980 0.00914 ## ReduceClash 0 2 2 / 166 = 0.01205 0.00278 # generation 37: best score out of 20: T0287.try7-al8 224.58038 cost/residue, 198 clashes 0.16317 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 7 / 34 = 0.20588 0.00195 ## JiggleSubtree 0 17 6 / 88 = 0.06818 0.01418 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 22 3 / 28 = 0.10714 0.00369 ## TweakPhiSegment 0 14 2 / 21 = 0.09524 0.00000 ## TweakPsiSubtree 1 16 7 / 22 = 0.31818 0.00090 ## TweakPsiSegment 0 17 5 / 24 = 0.20833 0.00087 ## TweakPsiPhiSubtree 0 23 4 / 27 = 0.14815 0.00488 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 1 7 2 / 14 = 0.14286 0.01678 ## TweakHbondSegment 0 15 1 / 35 = 0.02857 0.00383 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 2 / 20 = 0.10000 0.00029 ## OneRotamer 0 106 44 / 207 = 0.21256 0.03613 ## ClashingRotamer 0 2 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 75 = 0.02667 0.00269 ## ReduceBreak 2 4 2 / 195 = 0.01026 0.00381 ## CloseGap 0 16 6 / 286 = 0.02098 0.05358 ## HealGap 0 85 5 / 204 = 0.02451 0.01015 ## MoveGap 1 5 5 / 217 = 0.02304 0.02463 ## ReduceConstraint 0 1 0 / 162 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 111 = 0.00901 0.02969 ## InsertSpecificFragment 0 19 11 / 774 = 0.01421 0.05747 ## InsertFragment 0 6 4 / 164 = 0.02439 0.01109 ## TwoFragment 0 1 1 / 281 = 0.00356 0.06113 ## CrossOver 3 21 8 / 176 = 0.04545 0.01744 ## CrossAndInsert 6 5 2 / 212 = 0.00943 0.00880 ## ReduceClash 0 2 2 / 175 = 0.01143 0.00264 # generation 38: best score out of 20: T0287.try7-al8 224.48210 cost/residue, 202 clashes 0.16317 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 7 / 34 = 0.20588 0.00195 ## JiggleSubtree 0 17 6 / 92 = 0.06522 0.01356 ## JiggleSegment 0 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 31 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 22 3 / 28 = 0.10714 0.00369 ## TweakPhiSegment 0 14 3 / 22 = 0.13636 0.00000 ## TweakPsiSubtree 1 16 8 / 24 = 0.33333 0.00083 ## TweakPsiSegment 0 19 7 / 26 = 0.26923 0.00104 ## TweakPsiPhiSubtree 0 27 5 / 31 = 0.16129 0.00616 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 1 11 3 / 27 = 0.11111 0.01145 ## TweakHbondSegment 0 15 1 / 36 = 0.02778 0.00372 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 2 / 20 = 0.10000 0.00029 ## OneRotamer 0 108 46 / 216 = 0.21296 0.03641 ## ClashingRotamer 0 2 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 75 = 0.02667 0.00269 ## ReduceBreak 2 4 2 / 200 = 0.01000 0.00371 ## CloseGap 0 16 6 / 290 = 0.02069 0.05284 ## HealGap 0 87 5 / 210 = 0.02381 0.00986 ## MoveGap 1 5 5 / 224 = 0.02232 0.02386 ## ReduceConstraint 0 1 0 / 164 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 112 = 0.00893 0.02943 ## InsertSpecificFragment 0 19 11 / 788 = 0.01396 0.05645 ## InsertFragment 0 6 4 / 166 = 0.02410 0.01095 ## TwoFragment 0 1 1 / 284 = 0.00352 0.06049 ## CrossOver 3 21 8 / 178 = 0.04494 0.01724 ## CrossAndInsert 6 5 2 / 220 = 0.00909 0.00848 ## ReduceClash 0 2 2 / 181 = 0.01105 0.00255 # generation 39: best score out of 20: T0287.try7-al8 224.28479 cost/residue, 216 clashes 0.16385 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 7 / 34 = 0.20588 0.00195 ## JiggleSubtree 0 17 6 / 97 = 0.06186 0.01286 ## JiggleSegment 0 1 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 22 3 / 29 = 0.10345 0.00356 ## TweakPhiSegment 0 14 3 / 22 = 0.13636 0.00000 ## TweakPsiSubtree 1 16 8 / 24 = 0.33333 0.00083 ## TweakPsiSegment 0 20 8 / 28 = 0.28571 0.00099 ## TweakPsiPhiSubtree 0 30 6 / 36 = 0.16667 0.00851 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 1 13 5 / 30 = 0.16667 0.01701 ## TweakHbondSegment 0 15 1 / 37 = 0.02703 0.00362 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 2 / 20 = 0.10000 0.00029 ## OneRotamer 0 113 48 / 229 = 0.20961 0.03517 ## ClashingRotamer 0 2 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 75 = 0.02667 0.00269 ## ReduceBreak 2 4 2 / 203 = 0.00985 0.00366 ## CloseGap 0 16 6 / 297 = 0.02020 0.05159 ## HealGap 0 88 5 / 214 = 0.02336 0.00968 ## MoveGap 1 5 5 / 229 = 0.02183 0.02334 ## ReduceConstraint 0 1 0 / 165 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 115 = 0.00870 0.02866 ## InsertSpecificFragment 0 19 11 / 800 = 0.01375 0.05560 ## InsertFragment 0 6 4 / 171 = 0.02339 0.01063 ## TwoFragment 0 1 1 / 293 = 0.00341 0.05863 ## CrossOver 3 21 8 / 188 = 0.04255 0.01633 ## CrossAndInsert 6 5 2 / 223 = 0.00897 0.00837 ## ReduceClash 0 2 2 / 183 = 0.01093 0.00253 # generation 40: best score out of 20: T0287.try7-al8 224.26582 cost/residue, 216 clashes 0.16385 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 7 / 37 = 0.18919 0.00180 ## JiggleSubtree 0 17 6 / 101 = 0.05941 0.01235 ## JiggleSegment 0 1 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 3 / 30 = 0.10000 0.00344 ## TweakPhiSegment 0 14 3 / 23 = 0.13043 0.00000 ## TweakPsiSubtree 1 16 8 / 24 = 0.33333 0.00083 ## TweakPsiSegment 0 21 9 / 30 = 0.30000 0.00144 ## TweakPsiPhiSubtree 1 34 7 / 44 = 0.15909 0.00734 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 15 5 / 36 = 0.13889 0.01417 ## TweakHbondSegment 0 16 2 / 39 = 0.05128 0.00551 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 2 / 20 = 0.10000 0.00029 ## OneRotamer 0 118 51 / 243 = 0.20988 0.03378 ## ClashingRotamer 0 2 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 76 = 0.02632 0.00265 ## ReduceBreak 2 4 2 / 208 = 0.00962 0.00357 ## CloseGap 0 16 6 / 298 = 0.02013 0.05142 ## HealGap 0 88 5 / 218 = 0.02294 0.00950 ## MoveGap 1 5 5 / 230 = 0.02174 0.02324 ## ReduceConstraint 0 1 0 / 168 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 118 = 0.00847 0.02793 ## InsertSpecificFragment 0 19 11 / 810 = 0.01358 0.05491 ## InsertFragment 0 6 4 / 176 = 0.02273 0.01033 ## TwoFragment 0 1 1 / 296 = 0.00338 0.05804 ## CrossOver 3 21 8 / 193 = 0.04145 0.01590 ## CrossAndInsert 6 5 2 / 232 = 0.00862 0.00804 ## ReduceClash 0 2 2 / 190 = 0.01053 0.00243 # generation 41: best score out of 20: T0287.try7-al8 224.03491 cost/residue, 208 clashes 0.16385 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 8 / 38 = 0.21053 0.00245 ## JiggleSubtree 0 17 6 / 104 = 0.05769 0.01200 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 3 / 31 = 0.09677 0.00333 ## TweakPhiSegment 0 15 4 / 24 = 0.16667 0.00248 ## TweakPsiSubtree 1 16 8 / 24 = 0.33333 0.00083 ## TweakPsiSegment 0 22 9 / 33 = 0.27273 0.00131 ## TweakPsiPhiSubtree 1 35 7 / 49 = 0.14286 0.00659 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 17 7 / 42 = 0.16667 0.01774 ## TweakHbondSegment 0 18 4 / 44 = 0.09091 0.00671 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 2 / 20 = 0.10000 0.00029 ## OneRotamer 0 122 55 / 258 = 0.21318 0.03375 ## ClashingRotamer 0 2 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 76 = 0.02632 0.00265 ## ReduceBreak 2 4 2 / 212 = 0.00943 0.00350 ## CloseGap 0 16 6 / 303 = 0.01980 0.05057 ## HealGap 0 88 5 / 219 = 0.02283 0.00946 ## MoveGap 1 5 5 / 232 = 0.02155 0.02304 ## ReduceConstraint 0 1 0 / 172 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 119 = 0.00840 0.02770 ## InsertSpecificFragment 0 19 11 / 826 = 0.01332 0.05385 ## InsertFragment 0 6 4 / 179 = 0.02235 0.01016 ## TwoFragment 0 1 1 / 300 = 0.00333 0.05726 ## CrossOver 3 21 8 / 201 = 0.03980 0.01527 ## CrossAndInsert 6 5 2 / 237 = 0.00844 0.00787 ## ReduceClash 0 2 2 / 194 = 0.01031 0.00238 # generation 42: best score out of 20: T0287.try7-al8 223.94337 cost/residue, 206 clashes 0.16385 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 9 / 40 = 0.22500 0.00240 ## JiggleSubtree 0 18 7 / 106 = 0.06604 0.01187 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 3 / 31 = 0.09677 0.00333 ## TweakPhiSegment 1 17 4 / 28 = 0.14286 0.00213 ## TweakPsiSubtree 1 17 10 / 26 = 0.38462 0.00109 ## TweakPsiSegment 0 22 10 / 34 = 0.29412 0.00129 ## TweakPsiPhiSubtree 1 36 7 / 50 = 0.14000 0.00646 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 21 9 / 51 = 0.17647 0.01593 ## TweakHbondSegment 0 19 5 / 54 = 0.09259 0.00657 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 21 = 0.09524 0.00028 ## OneRotamer 0 125 58 / 268 = 0.21642 0.03334 ## ClashingRotamer 0 2 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 78 = 0.02564 0.00258 ## ReduceBreak 2 4 2 / 214 = 0.00935 0.00347 ## CloseGap 0 16 6 / 306 = 0.01961 0.05007 ## HealGap 0 89 6 / 226 = 0.02655 0.00922 ## MoveGap 1 5 5 / 237 = 0.02110 0.02255 ## ReduceConstraint 0 1 0 / 175 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 123 = 0.00813 0.02680 ## InsertSpecificFragment 0 19 11 / 839 = 0.01311 0.05302 ## InsertFragment 0 6 4 / 182 = 0.02198 0.00999 ## TwoFragment 0 1 1 / 303 = 0.00330 0.05670 ## CrossOver 3 21 8 / 204 = 0.03922 0.01505 ## CrossAndInsert 6 5 2 / 242 = 0.00826 0.00771 ## ReduceClash 0 2 2 / 198 = 0.01010 0.00233 # generation 43: best score out of 20: T0287.try7-al8 223.86440 cost/residue, 208 clashes 0.16385 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 11 / 46 = 0.23913 0.00590 ## JiggleSubtree 0 19 8 / 111 = 0.07207 0.01177 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 3 / 31 = 0.09677 0.00333 ## TweakPhiSegment 1 17 4 / 28 = 0.14286 0.00213 ## TweakPsiSubtree 1 18 10 / 29 = 0.34483 0.00097 ## TweakPsiSegment 0 24 10 / 38 = 0.26316 0.00115 ## TweakPsiPhiSubtree 1 39 8 / 58 = 0.13793 0.00716 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 21 9 / 56 = 0.16071 0.01451 ## TweakHbondSegment 0 20 5 / 56 = 0.08929 0.00633 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 21 = 0.09524 0.00028 ## OneRotamer 0 127 59 / 282 = 0.20922 0.03204 ## ClashingRotamer 0 2 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 78 = 0.02564 0.00258 ## ReduceBreak 2 4 2 / 218 = 0.00917 0.00341 ## CloseGap 0 16 6 / 310 = 0.01935 0.04943 ## HealGap 0 90 7 / 229 = 0.03057 0.00915 ## MoveGap 1 5 5 / 242 = 0.02066 0.02209 ## ReduceConstraint 0 1 0 / 177 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 124 = 0.00806 0.02658 ## InsertSpecificFragment 0 19 11 / 852 = 0.01291 0.05221 ## InsertFragment 0 6 4 / 185 = 0.02162 0.00983 ## TwoFragment 0 1 1 / 307 = 0.00326 0.05596 ## CrossOver 4 21 8 / 209 = 0.03828 0.01469 ## CrossAndInsert 6 5 2 / 244 = 0.00820 0.00765 ## ReduceClash 0 2 2 / 202 = 0.00990 0.00229 # generation 44: best score out of 20: T0287.try7-al8 223.80428 cost/residue, 200 clashes 0.16457 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 11 / 48 = 0.22917 0.00565 ## JiggleSubtree 0 19 8 / 117 = 0.06838 0.01116 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 3 / 32 = 0.09375 0.00323 ## TweakPhiSegment 1 18 4 / 30 = 0.13333 0.00199 ## TweakPsiSubtree 1 18 10 / 30 = 0.33333 0.00094 ## TweakPsiSegment 0 25 10 / 40 = 0.25000 0.00109 ## TweakPsiPhiSubtree 1 43 9 / 65 = 0.13846 0.00715 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 25 10 / 66 = 0.15152 0.01348 ## TweakHbondSegment 0 21 6 / 59 = 0.10169 0.00923 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 21 = 0.09524 0.00028 ## OneRotamer 0 129 61 / 294 = 0.20748 0.03127 ## ClashingRotamer 0 2 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 2 8 2 / 79 = 0.02532 0.00255 ## ReduceBreak 2 4 2 / 219 = 0.00913 0.00339 ## CloseGap 0 16 6 / 313 = 0.01917 0.04895 ## HealGap 0 91 7 / 233 = 0.03004 0.00899 ## MoveGap 1 5 5 / 249 = 0.02008 0.02147 ## ReduceConstraint 0 1 0 / 181 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 127 = 0.00787 0.02595 ## InsertSpecificFragment 0 19 11 / 862 = 0.01276 0.05160 ## InsertFragment 0 6 4 / 186 = 0.02151 0.00977 ## TwoFragment 0 1 1 / 312 = 0.00321 0.05506 ## CrossOver 4 21 8 / 211 = 0.03791 0.01455 ## CrossAndInsert 6 5 2 / 250 = 0.00800 0.00746 ## ReduceClash 0 2 2 / 207 = 0.00966 0.00223 # generation 45: best score out of 20: T0287.try7-al8 223.70107 cost/residue, 201 clashes 0.16600 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 12 / 58 = 0.20690 0.00488 ## JiggleSubtree 0 19 8 / 119 = 0.06723 0.01098 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 3 / 33 = 0.09091 0.00313 ## TweakPhiSegment 1 18 4 / 30 = 0.13333 0.00199 ## TweakPsiSubtree 1 19 11 / 32 = 0.34375 0.00089 ## TweakPsiSegment 0 27 10 / 42 = 0.23810 0.00104 ## TweakPsiPhiSubtree 1 47 12 / 69 = 0.17391 0.00975 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 26 11 / 70 = 0.15714 0.01304 ## TweakHbondSegment 0 22 7 / 65 = 0.10769 0.00856 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 21 = 0.09524 0.00028 ## OneRotamer 0 131 64 / 305 = 0.20984 0.03058 ## ClashingRotamer 0 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 3 8 2 / 83 = 0.02410 0.00243 ## ReduceBreak 2 4 2 / 224 = 0.00893 0.00331 ## CloseGap 0 16 6 / 315 = 0.01905 0.04864 ## HealGap 0 91 7 / 237 = 0.02954 0.00884 ## MoveGap 1 5 5 / 251 = 0.01992 0.02130 ## ReduceConstraint 0 1 0 / 184 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 127 = 0.00787 0.02595 ## InsertSpecificFragment 0 19 11 / 880 = 0.01250 0.05055 ## InsertFragment 0 6 4 / 191 = 0.02094 0.00952 ## TwoFragment 0 1 1 / 316 = 0.00316 0.05436 ## CrossOver 4 21 8 / 215 = 0.03721 0.01428 ## CrossAndInsert 6 5 2 / 254 = 0.00787 0.00734 ## ReduceClash 0 2 2 / 209 = 0.00957 0.00221 # Closing gap before 149 # generation 46: best score out of 20: T0287.try7-al8 223.56238 cost/residue, 202 clashes 0.16195 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 12 / 63 = 0.19048 0.00450 ## JiggleSubtree 0 19 8 / 120 = 0.06667 0.01088 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 3 / 34 = 0.08824 0.00304 ## TweakPhiSegment 1 18 4 / 30 = 0.13333 0.00199 ## TweakPsiSubtree 1 21 12 / 35 = 0.34286 0.00099 ## TweakPsiSegment 0 27 10 / 43 = 0.23256 0.00102 ## TweakPsiPhiSubtree 3 47 12 / 74 = 0.16216 0.00909 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 29 14 / 76 = 0.18421 0.01734 ## TweakHbondSegment 0 25 8 / 71 = 0.11268 0.00793 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 21 = 0.09524 0.00028 ## OneRotamer 0 136 67 / 322 = 0.20807 0.02950 ## ClashingRotamer 0 2 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 3 9 4 / 86 = 0.04651 0.00401 ## ReduceBreak 2 4 2 / 227 = 0.00881 0.00327 ## CloseGap 0 16 6 / 319 = 0.01881 0.04803 ## HealGap 0 91 8 / 239 = 0.03347 0.00881 ## MoveGap 1 5 5 / 258 = 0.01938 0.02072 ## ReduceConstraint 0 1 0 / 186 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 129 = 0.00775 0.02555 ## InsertSpecificFragment 0 19 11 / 888 = 0.01239 0.05009 ## InsertFragment 0 6 4 / 194 = 0.02062 0.00937 ## TwoFragment 0 1 1 / 319 = 0.00313 0.05385 ## CrossOver 4 21 8 / 218 = 0.03670 0.01408 ## CrossAndInsert 6 5 2 / 261 = 0.00766 0.00715 ## ReduceClash 0 2 2 / 214 = 0.00935 0.00216 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 47: best score out of 20: T0287.try7-al8 223.52438 cost/residue, 203 clashes 0.16289 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 31 12 / 65 = 0.18462 0.00436 ## JiggleSubtree 0 19 8 / 120 = 0.06667 0.01088 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 3 / 34 = 0.08824 0.00304 ## TweakPhiSegment 1 18 4 / 32 = 0.12500 0.00186 ## TweakPsiSubtree 1 22 12 / 37 = 0.32432 0.00093 ## TweakPsiSegment 0 27 11 / 45 = 0.24444 0.00099 ## TweakPsiPhiSubtree 4 48 13 / 77 = 0.16883 0.00893 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 35 17 / 96 = 0.17708 0.01483 ## TweakHbondSegment 0 26 9 / 79 = 0.11392 0.00776 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 21 = 0.09524 0.00028 ## OneRotamer 0 139 68 / 328 = 0.20732 0.02912 ## ClashingRotamer 0 2 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 3 9 4 / 91 = 0.04396 0.00379 ## ReduceBreak 2 4 2 / 229 = 0.00873 0.00324 ## CloseGap 0 16 6 / 325 = 0.01846 0.04715 ## HealGap 0 91 8 / 241 = 0.03320 0.00874 ## MoveGap 1 5 5 / 261 = 0.01916 0.02048 ## ReduceConstraint 0 1 0 / 190 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 130 = 0.00769 0.02535 ## InsertSpecificFragment 0 19 11 / 901 = 0.01221 0.04937 ## InsertFragment 0 6 4 / 197 = 0.02030 0.00923 ## TwoFragment 0 1 1 / 323 = 0.00310 0.05318 ## CrossOver 4 21 8 / 220 = 0.03636 0.01395 ## CrossAndInsert 6 5 2 / 264 = 0.00758 0.00707 ## ReduceClash 0 2 2 / 217 = 0.00922 0.00213 # generation 48: best score out of 20: T0287.try7-al8 223.24046 cost/residue, 198 clashes 0.16586 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 15 / 72 = 0.20833 0.00408 ## JiggleSubtree 0 19 8 / 121 = 0.06612 0.01079 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 24 3 / 35 = 0.08571 0.00295 ## TweakPhiSegment 2 19 4 / 36 = 0.11111 0.00165 ## TweakPsiSubtree 1 23 13 / 38 = 0.34211 0.00093 ## TweakPsiSegment 0 27 11 / 45 = 0.24444 0.00099 ## TweakPsiPhiSubtree 5 50 13 / 81 = 0.16049 0.00848 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 38 17 / 104 = 0.16346 0.01368 ## TweakHbondSegment 0 27 9 / 83 = 0.10843 0.00738 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 21 = 0.09524 0.00028 ## OneRotamer 0 139 68 / 337 = 0.20178 0.02834 ## ClashingRotamer 0 2 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 3 10 5 / 96 = 0.05208 0.00832 ## ReduceBreak 2 4 2 / 232 = 0.00862 0.00320 ## CloseGap 0 16 6 / 330 = 0.01818 0.04643 ## HealGap 0 91 9 / 243 = 0.03704 0.00867 ## MoveGap 1 5 5 / 264 = 0.01894 0.02025 ## ReduceConstraint 0 1 0 / 194 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 131 = 0.00763 0.02516 ## InsertSpecificFragment 0 19 11 / 917 = 0.01200 0.04851 ## InsertFragment 0 6 4 / 200 = 0.02000 0.00909 ## TwoFragment 0 1 1 / 329 = 0.00304 0.05221 ## CrossOver 4 21 8 / 222 = 0.03604 0.01383 ## CrossAndInsert 6 5 2 / 268 = 0.00746 0.00696 ## ReduceClash 0 2 2 / 221 = 0.00905 0.00209 # Closing gap before 149 # generation 49: best score out of 20: T0287.try7-al8 223.16260 cost/residue, 200 clashes 0.16586 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 16 / 73 = 0.21918 0.00422 ## JiggleSubtree 0 19 8 / 123 = 0.06504 0.01062 ## JiggleSegment 0 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 24 3 / 35 = 0.08571 0.00295 ## TweakPhiSegment 2 22 4 / 39 = 0.10256 0.00153 ## TweakPsiSubtree 1 24 13 / 39 = 0.33333 0.00090 ## TweakPsiSegment 0 27 12 / 46 = 0.26087 0.00097 ## TweakPsiPhiSubtree 5 51 13 / 85 = 0.15294 0.00809 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 40 18 / 109 = 0.16514 0.01423 ## TweakHbondSegment 0 28 9 / 86 = 0.10465 0.00713 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 22 = 0.09091 0.00027 ## OneRotamer 0 141 69 / 342 = 0.20175 0.02894 ## ClashingRotamer 0 2 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 3 11 7 / 114 = 0.06140 0.00772 ## ReduceBreak 2 4 2 / 235 = 0.00851 0.00316 ## CloseGap 0 16 6 / 331 = 0.01813 0.04629 ## HealGap 0 92 9 / 247 = 0.03644 0.00853 ## MoveGap 1 5 5 / 266 = 0.01880 0.02009 ## ReduceConstraint 0 1 0 / 194 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 132 = 0.00758 0.02497 ## InsertSpecificFragment 0 19 11 / 936 = 0.01175 0.04752 ## InsertFragment 0 6 4 / 206 = 0.01942 0.00883 ## TwoFragment 0 1 1 / 331 = 0.00302 0.05190 ## CrossOver 4 21 8 / 227 = 0.03524 0.01352 ## CrossAndInsert 6 5 2 / 273 = 0.00733 0.00683 ## ReduceClash 0 2 2 / 226 = 0.00885 0.00205 # Closing gap before 36 next to short segment # generation 50: best score out of 20: T0287.try7-al8 223.11839 cost/residue, 195 clashes 0.16648 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 17 / 77 = 0.22078 0.00434 ## JiggleSubtree 0 19 8 / 126 = 0.06349 0.01037 ## JiggleSegment 0 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 24 3 / 35 = 0.08571 0.00295 ## TweakPhiSegment 2 23 4 / 40 = 0.10000 0.00149 ## TweakPsiSubtree 1 24 13 / 39 = 0.33333 0.00090 ## TweakPsiSegment 0 28 12 / 47 = 0.25532 0.00095 ## TweakPsiPhiSubtree 5 52 13 / 88 = 0.14773 0.00781 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 43 19 / 115 = 0.16522 0.01387 ## TweakHbondSegment 0 28 9 / 90 = 0.10000 0.00681 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 22 = 0.09091 0.00027 ## OneRotamer 0 144 72 / 357 = 0.20168 0.02797 ## ClashingRotamer 0 2 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 3 11 7 / 119 = 0.05882 0.00739 ## ReduceBreak 2 4 2 / 235 = 0.00851 0.00316 ## CloseGap 0 16 6 / 336 = 0.01786 0.04560 ## HealGap 0 93 9 / 248 = 0.03629 0.00850 ## MoveGap 1 5 5 / 270 = 0.01852 0.01980 ## ReduceConstraint 0 1 0 / 198 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 133 = 0.00752 0.02478 ## InsertSpecificFragment 0 19 11 / 956 = 0.01151 0.04653 ## InsertFragment 0 6 4 / 210 = 0.01905 0.00866 ## TwoFragment 0 1 1 / 334 = 0.00299 0.05143 ## CrossOver 4 21 9 / 234 = 0.03846 0.01317 ## CrossAndInsert 6 5 2 / 276 = 0.00725 0.00676 ## ReduceClash 0 2 2 / 230 = 0.00870 0.00201 # generation 51: best score out of 20: T0287.try7-al8 222.89450 cost/residue, 193 clashes 0.16536 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 17 / 82 = 0.20732 0.00408 ## JiggleSubtree 0 19 8 / 129 = 0.06202 0.01012 ## JiggleSegment 0 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 36 = 0.08333 0.00287 ## TweakPhiSegment 2 24 4 / 41 = 0.09756 0.00145 ## TweakPsiSubtree 1 24 13 / 39 = 0.33333 0.00090 ## TweakPsiSegment 0 28 12 / 47 = 0.25532 0.00095 ## TweakPsiPhiSubtree 6 55 13 / 93 = 0.13978 0.00739 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 45 20 / 120 = 0.16667 0.01393 ## TweakHbondSegment 1 30 11 / 95 = 0.11579 0.01115 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 22 = 0.09091 0.00027 ## OneRotamer 0 145 73 / 364 = 0.20055 0.02747 ## ClashingRotamer 0 2 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 3 12 8 / 131 = 0.06107 0.00809 ## ReduceBreak 2 4 2 / 239 = 0.00837 0.00311 ## CloseGap 0 16 6 / 341 = 0.01760 0.04493 ## HealGap 0 94 10 / 254 = 0.03937 0.00835 ## MoveGap 1 5 5 / 275 = 0.01818 0.01944 ## ReduceConstraint 0 1 0 / 200 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 134 = 0.00746 0.02460 ## InsertSpecificFragment 0 19 11 / 967 = 0.01138 0.04600 ## InsertFragment 0 6 4 / 212 = 0.01887 0.00858 ## TwoFragment 0 1 1 / 337 = 0.00297 0.05098 ## CrossOver 4 21 9 / 234 = 0.03846 0.01317 ## CrossAndInsert 6 5 2 / 281 = 0.00712 0.00664 ## ReduceClash 0 2 2 / 239 = 0.00837 0.00193 # generation 52: best score out of 20: T0287.try7-al8 222.70100 cost/residue, 193 clashes 0.16212 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 18 / 87 = 0.20690 0.00389 ## JiggleSubtree 0 19 8 / 129 = 0.06202 0.01012 ## JiggleSegment 0 1 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 37 = 0.08108 0.00279 ## TweakPhiSegment 2 24 4 / 43 = 0.09302 0.00139 ## TweakPsiSubtree 1 25 14 / 40 = 0.35000 0.00090 ## TweakPsiSegment 0 30 14 / 49 = 0.28571 0.00116 ## TweakPsiPhiSubtree 6 55 13 / 96 = 0.13542 0.00716 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 47 21 / 128 = 0.16406 0.01310 ## TweakHbondSegment 1 32 12 / 102 = 0.11765 0.01090 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 2 / 22 = 0.09091 0.00027 ## OneRotamer 0 149 77 / 374 = 0.20588 0.02723 ## ClashingRotamer 0 2 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 3 12 8 / 136 = 0.05882 0.00780 ## ReduceBreak 2 4 2 / 241 = 0.00830 0.00308 ## CloseGap 0 16 6 / 345 = 0.01739 0.04441 ## HealGap 0 96 11 / 259 = 0.04247 0.00894 ## MoveGap 1 5 5 / 278 = 0.01799 0.01923 ## ReduceConstraint 0 1 0 / 201 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 135 = 0.00741 0.02441 ## InsertSpecificFragment 0 19 11 / 984 = 0.01118 0.04520 ## InsertFragment 0 6 4 / 216 = 0.01852 0.00842 ## TwoFragment 0 1 1 / 339 = 0.00295 0.05067 ## CrossOver 4 21 9 / 238 = 0.03782 0.01295 ## CrossAndInsert 7 5 2 / 284 = 0.00704 0.00657 ## ReduceClash 0 2 2 / 247 = 0.00810 0.00187 # generation 53: best score out of 20: T0287.try7-al8 222.57442 cost/residue, 191 clashes 0.16212 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 20 / 89 = 0.22472 0.00392 ## JiggleSubtree 0 19 8 / 131 = 0.06107 0.00997 ## JiggleSegment 0 1 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 37 = 0.08108 0.00279 ## TweakPhiSegment 2 25 4 / 44 = 0.09091 0.00135 ## TweakPsiSubtree 1 25 14 / 40 = 0.35000 0.00090 ## TweakPsiSegment 0 32 14 / 54 = 0.25926 0.00105 ## TweakPsiPhiSubtree 6 57 15 / 101 = 0.14851 0.00697 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 50 24 / 132 = 0.18182 0.01303 ## TweakHbondSegment 1 33 12 / 106 = 0.11321 0.01049 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 3 / 23 = 0.13043 0.00034 ## OneRotamer 0 151 79 / 382 = 0.20681 0.02676 ## ClashingRotamer 0 2 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 3 14 9 / 146 = 0.06164 0.00813 ## ReduceBreak 2 4 2 / 242 = 0.00826 0.00307 ## CloseGap 0 16 6 / 346 = 0.01734 0.04429 ## HealGap 0 97 12 / 267 = 0.04494 0.00939 ## MoveGap 1 5 5 / 279 = 0.01792 0.01916 ## ReduceConstraint 0 1 0 / 203 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 136 = 0.00735 0.02423 ## InsertSpecificFragment 0 19 11 / 996 = 0.01104 0.04466 ## InsertFragment 0 6 4 / 221 = 0.01810 0.00823 ## TwoFragment 0 1 1 / 348 = 0.00287 0.04936 ## CrossOver 4 21 9 / 243 = 0.03704 0.01268 ## CrossAndInsert 7 5 2 / 289 = 0.00692 0.00646 ## ReduceClash 0 2 2 / 252 = 0.00794 0.00183 # generation 54: best score out of 20: T0287.try7-al8 222.51526 cost/residue, 197 clashes 0.15930 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 20 / 89 = 0.22472 0.00392 ## JiggleSubtree 0 20 9 / 135 = 0.06667 0.00988 ## JiggleSegment 0 1 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 37 = 0.08108 0.00279 ## TweakPhiSegment 2 27 5 / 46 = 0.10870 0.00130 ## TweakPsiSubtree 1 25 14 / 40 = 0.35000 0.00090 ## TweakPsiSegment 0 32 15 / 57 = 0.26316 0.00104 ## TweakPsiPhiSubtree 7 59 15 / 103 = 0.14563 0.00683 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 52 25 / 137 = 0.18248 0.01256 ## TweakHbondSegment 1 35 14 / 114 = 0.12281 0.01083 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 5 / 25 = 0.20000 0.00124 ## OneRotamer 0 154 81 / 394 = 0.20558 0.02647 ## ClashingRotamer 0 2 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 3 15 10 / 155 = 0.06452 0.00822 ## ReduceBreak 2 4 2 / 243 = 0.00823 0.00306 ## CloseGap 0 16 6 / 347 = 0.01729 0.04416 ## HealGap 0 97 12 / 271 = 0.04428 0.00926 ## MoveGap 1 5 5 / 283 = 0.01767 0.01889 ## ReduceConstraint 0 1 0 / 206 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 136 = 0.00735 0.02423 ## InsertSpecificFragment 0 19 11 / 1007 = 0.01092 0.04417 ## InsertFragment 0 6 4 / 228 = 0.01754 0.00797 ## TwoFragment 0 1 1 / 353 = 0.00283 0.04866 ## CrossOver 4 21 9 / 249 = 0.03614 0.01238 ## CrossAndInsert 7 5 2 / 294 = 0.00680 0.00635 ## ReduceClash 0 2 2 / 255 = 0.00784 0.00181 # generation 55: best score out of 20: T0287.try7-al8 222.37163 cost/residue, 194 clashes 0.15900 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 43 20 / 91 = 0.21978 0.00383 ## JiggleSubtree 0 20 9 / 140 = 0.06429 0.00952 ## JiggleSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 37 = 0.08108 0.00279 ## TweakPhiSegment 2 28 6 / 47 = 0.12766 0.00196 ## TweakPsiSubtree 1 25 15 / 41 = 0.36585 0.00089 ## TweakPsiSegment 0 32 15 / 57 = 0.26316 0.00104 ## TweakPsiPhiSubtree 8 61 16 / 106 = 0.15094 0.00749 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 55 26 / 144 = 0.18056 0.01295 ## TweakHbondSegment 1 38 15 / 124 = 0.12097 0.01031 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 5 / 28 = 0.17857 0.00111 ## OneRotamer 0 155 82 / 404 = 0.20297 0.02602 ## ClashingRotamer 0 2 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 4 16 11 / 167 = 0.06587 0.00775 ## ReduceBreak 2 4 2 / 245 = 0.00816 0.00303 ## CloseGap 0 16 6 / 350 = 0.01714 0.04378 ## HealGap 0 100 12 / 280 = 0.04286 0.00896 ## MoveGap 1 5 5 / 288 = 0.01736 0.01856 ## ReduceConstraint 0 1 0 / 208 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 136 = 0.00735 0.02423 ## InsertSpecificFragment 0 19 11 / 1012 = 0.01087 0.04395 ## InsertFragment 0 6 4 / 230 = 0.01739 0.00790 ## TwoFragment 0 1 1 / 357 = 0.00280 0.04812 ## CrossOver 4 21 9 / 254 = 0.03543 0.01213 ## CrossAndInsert 7 5 2 / 296 = 0.00676 0.00630 ## ReduceClash 0 3 3 / 259 = 0.01158 0.00210 # generation 56: best score out of 20: T0287.try7-al8 222.34485 cost/residue, 195 clashes 0.16060 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 44 20 / 94 = 0.21277 0.00371 ## JiggleSubtree 0 20 9 / 142 = 0.06338 0.00939 ## JiggleSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 37 = 0.08108 0.00279 ## TweakPhiSegment 2 29 6 / 48 = 0.12500 0.00192 ## TweakPsiSubtree 1 25 15 / 41 = 0.36585 0.00089 ## TweakPsiSegment 0 34 15 / 60 = 0.25000 0.00099 ## TweakPsiPhiSubtree 8 64 17 / 115 = 0.14783 0.00714 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 55 26 / 146 = 0.17808 0.01277 ## TweakHbondSegment 1 41 17 / 134 = 0.12687 0.01012 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 6 / 31 = 0.19355 0.00106 ## OneRotamer 0 156 83 / 419 = 0.19809 0.02517 ## ClashingRotamer 0 2 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 5 16 11 / 173 = 0.06358 0.00748 ## ReduceBreak 2 4 2 / 246 = 0.00813 0.00302 ## CloseGap 0 16 6 / 352 = 0.01705 0.04353 ## HealGap 0 101 14 / 287 = 0.04878 0.00875 ## MoveGap 1 5 5 / 293 = 0.01706 0.01824 ## ReduceConstraint 0 1 0 / 209 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 137 = 0.00730 0.02406 ## InsertSpecificFragment 0 19 11 / 1028 = 0.01070 0.04327 ## InsertFragment 0 6 4 / 233 = 0.01717 0.00780 ## TwoFragment 0 1 1 / 359 = 0.00279 0.04785 ## CrossOver 4 21 9 / 257 = 0.03502 0.01199 ## CrossAndInsert 7 5 2 / 296 = 0.00676 0.00630 ## ReduceClash 0 3 3 / 263 = 0.01141 0.00207 # generation 57: best score out of 20: T0287.try7-al8 222.04033 cost/residue, 195 clashes 0.15843 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 46 22 / 98 = 0.22449 0.00408 ## JiggleSubtree 0 21 10 / 143 = 0.06993 0.01079 ## JiggleSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 37 = 0.08108 0.00279 ## TweakPhiSegment 2 29 6 / 48 = 0.12500 0.00192 ## TweakPsiSubtree 1 25 15 / 41 = 0.36585 0.00089 ## TweakPsiSegment 0 34 15 / 61 = 0.24590 0.00098 ## TweakPsiPhiSubtree 8 66 18 / 120 = 0.15000 0.00731 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 60 27 / 158 = 0.17089 0.01182 ## TweakHbondSegment 1 43 19 / 143 = 0.13287 0.01318 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 17 6 / 35 = 0.17143 0.00094 ## OneRotamer 0 156 83 / 428 = 0.19393 0.02465 ## ClashingRotamer 0 2 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 5 16 11 / 180 = 0.06111 0.00719 ## ReduceBreak 2 4 2 / 247 = 0.00810 0.00301 ## CloseGap 0 16 6 / 354 = 0.01695 0.04328 ## HealGap 0 102 15 / 297 = 0.05051 0.00850 ## MoveGap 1 5 5 / 295 = 0.01695 0.01812 ## ReduceConstraint 0 1 0 / 210 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 138 = 0.00725 0.02388 ## InsertSpecificFragment 0 19 11 / 1036 = 0.01062 0.04294 ## InsertFragment 0 6 4 / 237 = 0.01688 0.00767 ## TwoFragment 0 1 1 / 364 = 0.00275 0.04719 ## CrossOver 4 21 9 / 261 = 0.03448 0.01181 ## CrossAndInsert 7 5 2 / 300 = 0.00667 0.00622 ## ReduceClash 0 3 3 / 267 = 0.01124 0.00204 # Closing gap before 149 without wiggling. # generation 58: best score out of 20: T0287.try7-al8 222.02652 cost/residue, 195 clashes 0.15843 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 23 / 100 = 0.23000 0.00403 ## JiggleSubtree 0 21 10 / 151 = 0.06623 0.01022 ## JiggleSegment 0 2 0 / 20 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 37 = 0.08108 0.00279 ## TweakPhiSegment 2 30 6 / 51 = 0.11765 0.00181 ## TweakPsiSubtree 1 26 15 / 42 = 0.35714 0.00087 ## TweakPsiSegment 0 34 15 / 62 = 0.24194 0.00096 ## TweakPsiPhiSubtree 8 67 19 / 125 = 0.15200 0.00703 ## TweakPsiPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 2 60 28 / 161 = 0.17391 0.01161 ## TweakHbondSegment 2 48 19 / 155 = 0.12258 0.01216 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 7 / 37 = 0.18919 0.00126 ## OneRotamer 0 156 83 / 432 = 0.19213 0.02442 ## ClashingRotamer 0 2 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 5 16 11 / 185 = 0.05946 0.00699 ## ReduceBreak 2 4 2 / 250 = 0.00800 0.00297 ## CloseGap 0 16 6 / 357 = 0.01681 0.04292 ## HealGap 0 104 16 / 306 = 0.05229 0.00849 ## MoveGap 1 5 5 / 298 = 0.01678 0.01794 ## ReduceConstraint 0 1 0 / 212 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 140 = 0.00714 0.02354 ## InsertSpecificFragment 0 19 11 / 1049 = 0.01049 0.04240 ## InsertFragment 0 6 4 / 239 = 0.01674 0.00761 ## TwoFragment 0 1 1 / 369 = 0.00271 0.04655 ## CrossOver 4 22 9 / 265 = 0.03396 0.01163 ## CrossAndInsert 7 5 2 / 304 = 0.00658 0.00614 ## ReduceClash 0 3 3 / 269 = 0.01115 0.00202 # generation 59: best score out of 20: T0287.try7-al8 221.97298 cost/residue, 194 clashes 0.15199 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 48 23 / 103 = 0.22330 0.00391 ## JiggleSubtree 0 21 10 / 158 = 0.06329 0.00976 ## JiggleSegment 0 2 0 / 20 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 25 3 / 37 = 0.08108 0.00279 ## TweakPhiSegment 2 33 7 / 56 = 0.12500 0.00210 ## TweakPsiSubtree 1 27 16 / 43 = 0.37209 0.00129 ## TweakPsiSegment 0 35 16 / 65 = 0.24615 0.00171 ## TweakPsiPhiSubtree 8 67 19 / 129 = 0.14729 0.00681 ## TweakPsiPhiSegment 1 5 0 / 7 = 0.00000 0.00000 ## TweakHbondSubtree 2 61 28 / 164 = 0.17073 0.01140 ## TweakHbondSegment 2 49 21 / 162 = 0.12963 0.01273 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 7 / 38 = 0.18421 0.00123 ## OneRotamer 0 158 85 / 439 = 0.19362 0.02408 ## ClashingRotamer 0 2 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 5 17 12 / 190 = 0.06316 0.00765 ## ReduceBreak 2 4 2 / 253 = 0.00791 0.00293 ## CloseGap 0 16 6 / 361 = 0.01662 0.04245 ## HealGap 0 106 16 / 315 = 0.05079 0.00824 ## MoveGap 1 5 5 / 302 = 0.01656 0.01770 ## ReduceConstraint 0 1 0 / 214 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 141 = 0.00709 0.02337 ## InsertSpecificFragment 0 19 11 / 1059 = 0.01039 0.04200 ## InsertFragment 0 6 4 / 241 = 0.01660 0.00754 ## TwoFragment 0 1 1 / 372 = 0.00269 0.04618 ## CrossOver 4 22 9 / 269 = 0.03346 0.01146 ## CrossAndInsert 7 5 2 / 310 = 0.00645 0.00602 ## ReduceClash 0 3 3 / 273 = 0.01099 0.00199 # generation 60: best score out of 20: T0287.try7-al8 221.83205 cost/residue, 189 clashes 0.16007 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 48 23 / 104 = 0.22115 0.00387 ## JiggleSubtree 0 22 11 / 163 = 0.06748 0.01058 ## JiggleSegment 0 2 0 / 20 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 0 27 3 / 39 = 0.07692 0.00265 ## TweakPhiSegment 2 33 7 / 56 = 0.12500 0.00210 ## TweakPsiSubtree 1 27 16 / 43 = 0.37209 0.00129 ## TweakPsiSegment 0 36 17 / 67 = 0.25373 0.00175 ## TweakPsiPhiSubtree 8 68 20 / 134 = 0.14925 0.00664 ## TweakPsiPhiSegment 1 5 0 / 8 = 0.00000 0.00000 ## TweakHbondSubtree 2 64 31 / 173 = 0.17919 0.01208 ## TweakHbondSegment 2 52 23 / 178 = 0.12921 0.01202 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 20 7 / 40 = 0.17500 0.00117 ## OneRotamer 0 158 85 / 446 = 0.19058 0.02371 ## ClashingRotamer 0 2 0 / 56 = 0.00000 0.00000 ## ClusteredRotamer 5 17 12 / 202 = 0.05941 0.00719 ## ReduceBreak 2 4 2 / 254 = 0.00787 0.00292 ## CloseGap 0 16 6 / 367 = 0.01635 0.04175 ## HealGap 0 107 16 / 319 = 0.05016 0.00814 ## MoveGap 1 5 5 / 309 = 0.01618 0.01730 ## ReduceConstraint 0 1 0 / 216 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 1 1 / 143 = 0.00699 0.02305 ## InsertSpecificFragment 0 19 11 / 1070 = 0.01028 0.04157 ## InsertFragment 0 6 4 / 241 = 0.01660 0.00754 ## TwoFragment 0 1 1 / 372 = 0.00269 0.04618 ## CrossOver 4 22 9 / 269 = 0.03346 0.01146 ## CrossAndInsert 7 6 3 / 312 = 0.00962 0.00637 ## ReduceClash 0 3 3 / 274 = 0.01095 0.00199 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1503352409.pdb -s /var/tmp/to_scwrl_1503352409.seq -o /var/tmp/from_scwrl_1503352409.pdb > /var/tmp/scwrl_1503352409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503352409.pdb # T0287.try7-al8-scwrl 224.95760 cost/residue 211 clashes 0.16008 breaks # iteration 4 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try7-al6 at pool[5] 238.89780 cost/residue, 226 clashes 0.26386 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # Closing gap before 1 next to short segment # generation 1: best score out of 20: T0287.try7-al6 235.75926 cost/residue, 233 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.01036 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 0 0 / 0 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 5 = 0.20000 0.01852 ## CloseGap 0 7 7 / 9 = 0.77778 2.50453 ## HealGap 0 0 0 / 9 = 0.00000 0.00000 ## MoveGap 0 0 0 / 8 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 7 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 2 / 24 = 0.08333 0.19485 ## InsertFragment 0 0 0 / 2 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 8 = 0.00000 0.00000 ## CrossOver 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 9 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 3 = 0.00000 0.00000 # Closing gap before 1 next to short segment # generation 2: best score out of 20: T0287.try7-al6 235.75926 cost/residue, 233 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.01036 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 1 / 2 = 0.50000 0.08070 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 12 = 0.08333 0.00772 ## CloseGap 0 9 8 / 17 = 0.47059 1.51055 ## HealGap 0 5 0 / 14 = 0.00000 0.00000 ## MoveGap 0 1 1 / 13 = 0.07692 0.19487 ## ReduceConstraint 0 1 0 / 10 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 2 / 51 = 0.03922 0.09170 ## InsertFragment 0 1 0 / 9 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 15 = 0.00000 0.00000 ## CrossOver 1 0 0 / 7 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 17 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 7 = 0.00000 0.00000 # generation 3: best score out of 20: T0287.try7-al6 233.94444 cost/residue, 222 clashes 0.14044 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.01036 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 1 / 3 = 0.33333 0.05380 ## ClashingRotamer 0 1 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 22 = 0.04545 0.00421 ## CloseGap 0 12 9 / 23 = 0.39130 1.12484 ## HealGap 0 9 0 / 19 = 0.00000 0.00000 ## MoveGap 0 1 1 / 17 = 0.05882 0.14902 ## ReduceConstraint 0 1 0 / 17 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 3 / 83 = 0.03614 0.08681 ## InsertFragment 0 1 0 / 16 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 17 = 0.00000 0.00000 ## CrossOver 1 1 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 22 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 13 = 0.07692 0.00468 # generation 4: best score out of 20: T0287.try7-al6 233.48656 cost/residue, 243 clashes 0.14164 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.01036 ## TweakPsiPhiSegment 0 1 1 / 2 = 0.50000 0.02504 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 2 = 0.50000 0.00917 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 2 1 / 4 = 0.25000 0.04035 ## ClashingRotamer 0 2 1 / 8 = 0.12500 0.01388 ## ClusteredRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ReduceBreak 0 1 1 / 25 = 0.04000 0.00370 ## CloseGap 0 13 9 / 34 = 0.26471 0.76092 ## HealGap 0 10 0 / 25 = 0.00000 0.00000 ## MoveGap 0 1 1 / 22 = 0.04545 0.11515 ## ReduceConstraint 0 2 0 / 24 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 3 / 109 = 0.02752 0.06611 ## InsertFragment 0 3 2 / 22 = 0.09091 0.11082 ## TwoFragment 0 0 0 / 28 = 0.00000 0.00000 ## CrossOver 1 1 0 / 11 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 25 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 20 = 0.05000 0.00304 # generation 5: best score out of 20: T0287.try7-al6 232.41541 cost/residue, 218 clashes 0.13662 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.00146 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 1 1 / 1 = 1.00000 0.01036 ## TweakPsiPhiSegment 0 1 1 / 3 = 0.33333 0.01669 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 3 = 0.33333 0.00611 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 2 1 / 5 = 0.20000 0.03228 ## ClashingRotamer 0 2 1 / 9 = 0.11111 0.01234 ## ClusteredRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ReduceBreak 1 1 1 / 30 = 0.03333 0.00309 ## CloseGap 0 14 10 / 41 = 0.24390 0.63466 ## HealGap 0 15 0 / 33 = 0.00000 0.00000 ## MoveGap 0 3 3 / 32 = 0.09375 0.14074 ## ReduceConstraint 0 2 0 / 28 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 4 / 131 = 0.03053 0.06512 ## InsertFragment 0 5 3 / 33 = 0.09091 0.07529 ## TwoFragment 0 0 0 / 32 = 0.00000 0.00000 ## CrossOver 1 2 1 / 15 = 0.06667 0.13760 ## CrossAndInsert 0 1 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 25 = 0.04000 0.00243 # generation 6: best score out of 20: T0287.try7-al6 232.41541 cost/residue, 218 clashes 0.13662 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.00146 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 2 1 / 2 = 0.50000 0.00518 ## TweakPsiPhiSegment 0 2 1 / 4 = 0.25000 0.01252 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 3 = 0.33333 0.00611 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 2 = 0.50000 0.00243 ## OneRotamer 0 3 1 / 6 = 0.16667 0.02690 ## ClashingRotamer 0 2 1 / 11 = 0.09091 0.01010 ## ClusteredRotamer 0 0 0 / 7 = 0.00000 0.00000 ## ReduceBreak 1 1 1 / 34 = 0.02941 0.00272 ## CloseGap 0 15 11 / 52 = 0.21154 0.50254 ## HealGap 0 18 0 / 37 = 0.00000 0.00000 ## MoveGap 0 3 3 / 41 = 0.07317 0.10984 ## ReduceConstraint 0 2 0 / 32 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 4 / 154 = 0.02597 0.05539 ## InsertFragment 0 6 3 / 45 = 0.06667 0.05521 ## TwoFragment 0 0 0 / 40 = 0.00000 0.00000 ## CrossOver 1 2 1 / 17 = 0.05882 0.12141 ## CrossAndInsert 0 1 0 / 35 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 31 = 0.03226 0.00196 # generation 7: best score out of 20: T0287.try7-al6 230.66187 cost/residue, 241 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.00146 ## TweakPsiSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 3 1 / 3 = 0.33333 0.00345 ## TweakPsiPhiSegment 0 4 1 / 6 = 0.16667 0.00835 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 3 = 0.33333 0.00611 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 4 = 0.25000 0.00122 ## OneRotamer 0 4 1 / 7 = 0.14286 0.02306 ## ClashingRotamer 0 2 1 / 11 = 0.09091 0.01010 ## ClusteredRotamer 0 1 0 / 8 = 0.00000 0.00000 ## ReduceBreak 1 1 1 / 40 = 0.02500 0.00232 ## CloseGap 0 15 12 / 63 = 0.19048 0.41717 ## HealGap 0 20 0 / 43 = 0.00000 0.00000 ## MoveGap 0 4 4 / 50 = 0.08000 0.12278 ## ReduceConstraint 0 2 0 / 35 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 4 / 177 = 0.02260 0.04819 ## InsertFragment 0 6 3 / 54 = 0.05556 0.04601 ## TwoFragment 0 0 0 / 41 = 0.00000 0.00000 ## CrossOver 2 3 2 / 22 = 0.09091 0.20132 ## CrossAndInsert 0 1 0 / 41 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 37 = 0.02703 0.00164 # generation 8: best score out of 20: T0287.try7-al6 230.66187 cost/residue, 241 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 0 / 7 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.00146 ## TweakPsiSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 3 1 / 3 = 0.33333 0.00345 ## TweakPsiPhiSegment 0 4 1 / 6 = 0.16667 0.00835 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 4 = 0.25000 0.00459 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 5 = 0.20000 0.00097 ## OneRotamer 0 4 1 / 8 = 0.12500 0.02017 ## ClashingRotamer 0 2 1 / 11 = 0.09091 0.01010 ## ClusteredRotamer 0 1 0 / 10 = 0.00000 0.00000 ## ReduceBreak 1 2 1 / 51 = 0.01961 0.00182 ## CloseGap 0 15 12 / 72 = 0.16667 0.36502 ## HealGap 0 23 0 / 48 = 0.00000 0.00000 ## MoveGap 0 4 4 / 59 = 0.06780 0.10405 ## ReduceConstraint 0 2 0 / 40 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 4 / 196 = 0.02041 0.04352 ## InsertFragment 0 6 3 / 57 = 0.05263 0.04359 ## TwoFragment 0 0 0 / 48 = 0.00000 0.00000 ## CrossOver 2 5 4 / 32 = 0.12500 0.13946 ## CrossAndInsert 0 1 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 44 = 0.02273 0.00138 # generation 9: best score out of 20: T0287.try7-al6 229.17390 cost/residue, 242 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 0 / 7 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 4 2 / 4 = 0.50000 0.00133 ## TweakPsiSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 2 5 2 / 5 = 0.40000 0.00586 ## TweakPsiPhiSegment 0 4 1 / 6 = 0.16667 0.00835 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 4 = 0.25000 0.00459 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 5 = 0.20000 0.00097 ## OneRotamer 0 4 1 / 8 = 0.12500 0.02017 ## ClashingRotamer 0 2 1 / 11 = 0.09091 0.01010 ## ClusteredRotamer 0 2 0 / 13 = 0.00000 0.00000 ## ReduceBreak 1 2 1 / 54 = 0.01852 0.00171 ## CloseGap 0 16 13 / 87 = 0.14943 0.30490 ## HealGap 0 24 0 / 50 = 0.00000 0.00000 ## MoveGap 0 5 4 / 66 = 0.06061 0.09302 ## ReduceConstraint 0 2 0 / 45 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 4 / 219 = 0.01826 0.03895 ## InsertFragment 0 7 4 / 59 = 0.06780 0.04465 ## TwoFragment 0 0 0 / 51 = 0.00000 0.00000 ## CrossOver 2 6 5 / 44 = 0.11364 0.16220 ## CrossAndInsert 0 1 0 / 53 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 54 = 0.01852 0.00113 # generation 10: best score out of 20: T0287.try7-al6 228.93005 cost/residue, 264 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 0 / 7 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 4 2 / 4 = 0.50000 0.00133 ## TweakPsiSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 2 5 2 / 5 = 0.40000 0.00586 ## TweakPsiPhiSegment 0 5 1 / 7 = 0.14286 0.00715 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 4 = 0.25000 0.00459 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 5 = 0.20000 0.00097 ## OneRotamer 0 6 2 / 11 = 0.18182 0.02324 ## ClashingRotamer 0 2 1 / 12 = 0.08333 0.00925 ## ClusteredRotamer 0 2 0 / 17 = 0.00000 0.00000 ## ReduceBreak 1 2 1 / 59 = 0.01695 0.00157 ## CloseGap 0 16 13 / 102 = 0.12745 0.26007 ## HealGap 0 28 0 / 65 = 0.00000 0.00000 ## MoveGap 0 5 4 / 74 = 0.05405 0.08296 ## ReduceConstraint 0 2 0 / 46 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 5 / 243 = 0.02058 0.03552 ## InsertFragment 0 8 5 / 62 = 0.08065 0.04642 ## TwoFragment 0 0 0 / 55 = 0.00000 0.00000 ## CrossOver 2 7 5 / 48 = 0.10417 0.14868 ## CrossAndInsert 0 1 0 / 56 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 57 = 0.01754 0.00107 # generation 11: best score out of 20: T0287.try7-al6 228.86984 cost/residue, 264 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 0 / 7 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 5 2 / 5 = 0.40000 0.00106 ## TweakPsiSegment 0 2 1 / 4 = 0.25000 0.00036 ## TweakPsiPhiSubtree 2 6 2 / 6 = 0.33333 0.00488 ## TweakPsiPhiSegment 0 5 1 / 7 = 0.14286 0.00715 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 4 = 0.25000 0.00459 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 6 = 0.16667 0.00081 ## OneRotamer 0 7 3 / 13 = 0.23077 0.02429 ## ClashingRotamer 0 2 1 / 13 = 0.07692 0.00854 ## ClusteredRotamer 0 4 1 / 19 = 0.05263 0.00050 ## ReduceBreak 1 3 1 / 65 = 0.01538 0.00142 ## CloseGap 0 16 13 / 112 = 0.11607 0.23685 ## HealGap 0 32 0 / 72 = 0.00000 0.00000 ## MoveGap 0 5 4 / 84 = 0.04762 0.07308 ## ReduceConstraint 0 2 0 / 53 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 5 / 265 = 0.01887 0.03257 ## InsertFragment 0 8 5 / 67 = 0.07463 0.04296 ## TwoFragment 0 0 0 / 56 = 0.00000 0.00000 ## CrossOver 2 7 5 / 55 = 0.09091 0.12976 ## CrossAndInsert 0 1 0 / 59 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 59 = 0.01695 0.00103 # Closing gap before 76 without wiggling. # generation 12: best score out of 20: T0287.try7-al6 228.41702 cost/residue, 256 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 0 / 7 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 6 3 / 6 = 0.50000 0.00100 ## TweakPsiSegment 0 2 1 / 4 = 0.25000 0.00036 ## TweakPsiPhiSubtree 2 8 3 / 8 = 0.37500 0.01383 ## TweakPsiPhiSegment 0 6 2 / 8 = 0.25000 0.01917 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 3 1 / 6 = 0.16667 0.00306 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 6 = 0.16667 0.00081 ## OneRotamer 0 10 5 / 17 = 0.29412 0.05273 ## ClashingRotamer 0 2 1 / 14 = 0.07143 0.00793 ## ClusteredRotamer 0 4 1 / 19 = 0.05263 0.00050 ## ReduceBreak 1 3 1 / 68 = 0.01471 0.00136 ## CloseGap 0 17 14 / 131 = 0.10687 0.20262 ## HealGap 0 33 0 / 75 = 0.00000 0.00000 ## MoveGap 0 5 4 / 88 = 0.04545 0.06976 ## ReduceConstraint 0 2 0 / 58 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 5 / 293 = 0.01706 0.02946 ## InsertFragment 0 8 5 / 74 = 0.06757 0.03889 ## TwoFragment 0 0 0 / 61 = 0.00000 0.00000 ## CrossOver 2 8 5 / 60 = 0.08333 0.11895 ## CrossAndInsert 0 2 0 / 63 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 62 = 0.01613 0.00098 # generation 13: best score out of 20: T0287.try7-al6 228.00745 cost/residue, 260 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 1 / 8 = 0.12500 0.04707 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 8 4 / 8 = 0.50000 0.03868 ## TweakPsiSegment 0 2 1 / 4 = 0.25000 0.00036 ## TweakPsiPhiSubtree 2 9 4 / 9 = 0.44444 0.02578 ## TweakPsiPhiSegment 0 10 4 / 13 = 0.30769 0.01604 ## TweakHbondSubtree 0 2 1 / 3 = 0.33333 0.05272 ## TweakHbondSegment 0 3 1 / 6 = 0.16667 0.00306 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 6 = 0.16667 0.00081 ## OneRotamer 0 11 5 / 19 = 0.26316 0.04718 ## ClashingRotamer 0 2 1 / 15 = 0.06667 0.00740 ## ClusteredRotamer 0 4 1 / 20 = 0.05000 0.00048 ## ReduceBreak 1 3 1 / 73 = 0.01370 0.00127 ## CloseGap 0 17 14 / 139 = 0.10072 0.19096 ## HealGap 0 33 0 / 80 = 0.00000 0.00000 ## MoveGap 0 5 4 / 99 = 0.04040 0.06201 ## ReduceConstraint 0 2 0 / 66 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 5 / 312 = 0.01603 0.02766 ## InsertFragment 0 8 5 / 77 = 0.06494 0.03738 ## TwoFragment 0 0 0 / 70 = 0.00000 0.00000 ## CrossOver 3 10 7 / 68 = 0.10294 0.11102 ## CrossAndInsert 0 2 0 / 67 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 64 = 0.01562 0.00095 # generation 14: best score out of 20: T0287.try7-al6 228.00545 cost/residue, 260 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 2 / 14 = 0.14286 0.02947 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 10 5 / 10 = 0.50000 0.03115 ## TweakPsiSegment 0 3 1 / 6 = 0.16667 0.00024 ## TweakPsiPhiSubtree 2 11 4 / 11 = 0.36364 0.02110 ## TweakPsiPhiSegment 0 12 4 / 15 = 0.26667 0.01390 ## TweakHbondSubtree 0 2 1 / 5 = 0.20000 0.03163 ## TweakHbondSegment 0 3 1 / 6 = 0.16667 0.00306 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 6 = 0.16667 0.00081 ## OneRotamer 0 11 5 / 20 = 0.25000 0.04482 ## ClashingRotamer 0 2 1 / 17 = 0.05882 0.00653 ## ClusteredRotamer 0 4 1 / 21 = 0.04762 0.00045 ## ReduceBreak 2 4 1 / 77 = 0.01299 0.00120 ## CloseGap 0 17 14 / 145 = 0.09655 0.18306 ## HealGap 0 34 0 / 81 = 0.00000 0.00000 ## MoveGap 0 5 4 / 105 = 0.03810 0.05847 ## ReduceConstraint 0 2 0 / 69 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 5 / 335 = 0.01493 0.02576 ## InsertFragment 0 9 5 / 85 = 0.05882 0.03386 ## TwoFragment 0 0 0 / 77 = 0.00000 0.00000 ## CrossOver 3 10 7 / 75 = 0.09333 0.10066 ## CrossAndInsert 0 2 0 / 72 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 68 = 0.01471 0.00089 # generation 15: best score out of 20: T0287.try7-al6 227.87033 cost/residue, 257 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 3 / 16 = 0.18750 0.02630 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 4 1 / 4 = 0.25000 0.00000 ## TweakPsiSubtree 0 11 7 / 13 = 0.53846 0.02409 ## TweakPsiSegment 0 3 1 / 7 = 0.14286 0.00021 ## TweakPsiPhiSubtree 2 13 4 / 14 = 0.28571 0.01658 ## TweakPsiPhiSegment 0 14 4 / 17 = 0.23529 0.01227 ## TweakHbondSubtree 0 4 3 / 10 = 0.30000 0.01748 ## TweakHbondSegment 0 3 1 / 6 = 0.16667 0.00306 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 7 = 0.14286 0.00070 ## OneRotamer 0 13 6 / 24 = 0.25000 0.04298 ## ClashingRotamer 0 2 1 / 23 = 0.04348 0.00483 ## ClusteredRotamer 0 4 1 / 23 = 0.04348 0.00041 ## ReduceBreak 2 4 1 / 82 = 0.01220 0.00113 ## CloseGap 0 17 14 / 152 = 0.09211 0.17463 ## HealGap 0 34 0 / 83 = 0.00000 0.00000 ## MoveGap 0 5 4 / 112 = 0.03571 0.05481 ## ReduceConstraint 0 2 0 / 74 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 5 / 349 = 0.01433 0.02473 ## InsertFragment 0 9 5 / 88 = 0.05682 0.03271 ## TwoFragment 0 0 0 / 84 = 0.00000 0.00000 ## CrossOver 4 10 7 / 84 = 0.08333 0.08987 ## CrossAndInsert 0 2 0 / 78 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 71 = 0.01408 0.00086 # generation 16: best score out of 20: T0287.try7-al6 227.80904 cost/residue, 260 clashes 0.13940 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 18 = 0.16667 0.02337 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 5 1 / 5 = 0.20000 0.00000 ## TweakPsiSubtree 0 14 8 / 17 = 0.47059 0.01871 ## TweakPsiSegment 0 3 1 / 7 = 0.14286 0.00021 ## TweakPsiPhiSubtree 2 14 4 / 16 = 0.25000 0.01450 ## TweakPsiPhiSegment 0 17 4 / 20 = 0.20000 0.01043 ## TweakHbondSubtree 0 5 3 / 11 = 0.27273 0.01589 ## TweakHbondSegment 0 4 1 / 7 = 0.14286 0.00262 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 7 = 0.14286 0.00070 ## OneRotamer 0 14 7 / 30 = 0.23333 0.03593 ## ClashingRotamer 0 2 1 / 24 = 0.04167 0.00463 ## ClusteredRotamer 0 4 1 / 25 = 0.04000 0.00038 ## ReduceBreak 2 4 1 / 85 = 0.01176 0.00109 ## CloseGap 0 17 14 / 166 = 0.08434 0.15990 ## HealGap 0 34 0 / 87 = 0.00000 0.00000 ## MoveGap 0 5 4 / 119 = 0.03361 0.05159 ## ReduceConstraint 0 2 0 / 82 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 6 / 366 = 0.01639 0.02412 ## InsertFragment 0 9 5 / 96 = 0.05208 0.02998 ## TwoFragment 0 0 0 / 87 = 0.00000 0.00000 ## CrossOver 4 10 7 / 89 = 0.07865 0.08483 ## CrossAndInsert 0 2 0 / 83 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 72 = 0.01389 0.00084 # generation 17: best score out of 20: T0287.try7-al6 227.51270 cost/residue, 253 clashes 0.17689 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 3 / 23 = 0.13043 0.01829 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 5 1 / 5 = 0.20000 0.00000 ## TweakPsiSubtree 0 14 8 / 17 = 0.47059 0.01871 ## TweakPsiSegment 0 3 1 / 7 = 0.14286 0.00021 ## TweakPsiPhiSubtree 2 14 4 / 16 = 0.25000 0.01450 ## TweakPsiPhiSegment 0 19 4 / 22 = 0.18182 0.00948 ## TweakHbondSubtree 0 6 4 / 12 = 0.33333 0.03115 ## TweakHbondSegment 0 5 2 / 8 = 0.25000 0.00333 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 7 = 0.14286 0.00070 ## OneRotamer 0 17 7 / 35 = 0.20000 0.03080 ## ClashingRotamer 0 2 1 / 26 = 0.03846 0.00427 ## ClusteredRotamer 0 5 1 / 26 = 0.03846 0.00037 ## ReduceBreak 2 5 2 / 90 = 0.02222 0.00432 ## CloseGap 0 17 14 / 172 = 0.08140 0.15432 ## HealGap 0 35 0 / 92 = 0.00000 0.00000 ## MoveGap 0 5 4 / 127 = 0.03150 0.04834 ## ReduceConstraint 0 2 0 / 86 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 6 / 390 = 0.01538 0.02264 ## InsertFragment 0 9 5 / 101 = 0.04950 0.02850 ## TwoFragment 0 0 0 / 92 = 0.00000 0.00000 ## CrossOver 4 10 7 / 101 = 0.06931 0.07475 ## CrossAndInsert 0 2 0 / 85 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 74 = 0.01351 0.00082 # generation 18: best score out of 20: T0287.try7-al6 227.51270 cost/residue, 253 clashes 0.17689 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 25 = 0.12000 0.01683 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 5 1 / 5 = 0.20000 0.00000 ## TweakPsiSubtree 0 19 10 / 22 = 0.45455 0.01461 ## TweakPsiSegment 0 5 3 / 9 = 0.33333 0.00513 ## TweakPsiPhiSubtree 2 15 4 / 18 = 0.22222 0.01289 ## TweakPsiPhiSegment 0 19 4 / 22 = 0.18182 0.00948 ## TweakHbondSubtree 0 7 4 / 15 = 0.26667 0.02492 ## TweakHbondSegment 0 5 2 / 8 = 0.25000 0.00333 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 7 = 0.14286 0.00070 ## OneRotamer 0 18 7 / 37 = 0.18919 0.02914 ## ClashingRotamer 0 2 1 / 28 = 0.03571 0.00397 ## ClusteredRotamer 0 5 1 / 27 = 0.03704 0.00035 ## ReduceBreak 2 5 2 / 94 = 0.02128 0.00414 ## CloseGap 0 17 14 / 187 = 0.07487 0.14194 ## HealGap 0 35 0 / 95 = 0.00000 0.00000 ## MoveGap 0 5 4 / 129 = 0.03101 0.04759 ## ReduceConstraint 0 2 0 / 91 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 411 = 0.01703 0.02157 ## InsertFragment 0 9 5 / 108 = 0.04630 0.02665 ## TwoFragment 0 0 0 / 96 = 0.00000 0.00000 ## CrossOver 4 10 7 / 109 = 0.06422 0.06926 ## CrossAndInsert 0 2 0 / 88 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 78 = 0.01282 0.00078 # generation 19: best score out of 20: T0287.try7-al6 227.50821 cost/residue, 252 clashes 0.17862 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 26 = 0.11538 0.01618 ## JiggleSubtree 0 0 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 5 1 / 5 = 0.20000 0.00000 ## TweakPsiSubtree 0 20 10 / 23 = 0.43478 0.01397 ## TweakPsiSegment 0 6 4 / 12 = 0.33333 0.00392 ## TweakPsiPhiSubtree 2 16 5 / 21 = 0.23810 0.01126 ## TweakPsiPhiSegment 0 20 4 / 23 = 0.17391 0.00907 ## TweakHbondSubtree 0 10 5 / 18 = 0.27778 0.02764 ## TweakHbondSegment 0 6 3 / 9 = 0.33333 0.01757 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 9 = 0.11111 0.00054 ## OneRotamer 0 20 7 / 41 = 0.17073 0.02629 ## ClashingRotamer 0 2 1 / 30 = 0.03333 0.00370 ## ClusteredRotamer 0 5 1 / 28 = 0.03571 0.00034 ## ReduceBreak 2 5 2 / 100 = 0.02000 0.00389 ## CloseGap 0 17 14 / 199 = 0.07035 0.13338 ## HealGap 0 35 0 / 100 = 0.00000 0.00000 ## MoveGap 0 5 4 / 140 = 0.02857 0.04385 ## ReduceConstraint 0 2 0 / 95 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 426 = 0.01643 0.02081 ## InsertFragment 0 9 5 / 113 = 0.04425 0.02547 ## TwoFragment 0 0 0 / 100 = 0.00000 0.00000 ## CrossOver 4 10 7 / 114 = 0.06140 0.06622 ## CrossAndInsert 0 2 0 / 90 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 81 = 0.01235 0.00075 # generation 20: best score out of 20: T0287.try7-al6 227.33109 cost/residue, 252 clashes 0.18198 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 26 = 0.11538 0.01618 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 5 2 / 7 = 0.28571 0.01217 ## TweakPsiSubtree 0 21 10 / 25 = 0.40000 0.01285 ## TweakPsiSegment 0 7 4 / 14 = 0.28571 0.00336 ## TweakPsiPhiSubtree 2 16 5 / 22 = 0.22727 0.01075 ## TweakPsiPhiSegment 0 22 5 / 26 = 0.19231 0.00862 ## TweakHbondSubtree 0 13 8 / 26 = 0.30769 0.03343 ## TweakHbondSegment 0 9 5 / 15 = 0.33333 0.01793 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 9 = 0.11111 0.00054 ## OneRotamer 0 22 9 / 46 = 0.19565 0.03164 ## ClashingRotamer 0 2 1 / 31 = 0.03226 0.00358 ## ClusteredRotamer 0 5 1 / 30 = 0.03333 0.00032 ## ReduceBreak 2 5 2 / 103 = 0.01942 0.00378 ## CloseGap 0 17 14 / 207 = 0.06763 0.12823 ## HealGap 0 35 0 / 103 = 0.00000 0.00000 ## MoveGap 0 5 4 / 143 = 0.02797 0.04293 ## ReduceConstraint 0 3 0 / 99 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 447 = 0.01566 0.01983 ## InsertFragment 0 9 5 / 118 = 0.04237 0.02439 ## TwoFragment 0 0 0 / 103 = 0.00000 0.00000 ## CrossOver 4 10 7 / 121 = 0.05785 0.06239 ## CrossAndInsert 0 2 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 86 = 0.01163 0.00071 # generation 21: best score out of 20: T0287.try7-al6 226.95575 cost/residue, 250 clashes 0.18069 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 29 = 0.10345 0.01451 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 1 / 5 = 0.20000 0.07507 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 0 6 3 / 9 = 0.33333 0.01284 ## TweakPsiSubtree 0 21 10 / 26 = 0.38462 0.01236 ## TweakPsiSegment 0 8 5 / 15 = 0.33333 0.00503 ## TweakPsiPhiSubtree 2 16 5 / 24 = 0.20833 0.00986 ## TweakPsiPhiSegment 0 22 5 / 27 = 0.18519 0.00830 ## TweakHbondSubtree 0 17 10 / 32 = 0.31250 0.03339 ## TweakHbondSegment 0 10 5 / 20 = 0.25000 0.01344 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 3 / 11 = 0.27273 0.00150 ## OneRotamer 0 23 9 / 49 = 0.18367 0.02970 ## ClashingRotamer 0 2 1 / 32 = 0.03125 0.00347 ## ClusteredRotamer 0 5 1 / 33 = 0.03030 0.00029 ## ReduceBreak 2 5 2 / 105 = 0.01905 0.00370 ## CloseGap 0 17 14 / 219 = 0.06393 0.12120 ## HealGap 0 39 4 / 112 = 0.03571 0.00916 ## MoveGap 0 5 4 / 148 = 0.02703 0.04148 ## ReduceConstraint 0 3 0 / 105 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 462 = 0.01515 0.01919 ## InsertFragment 0 9 5 / 122 = 0.04098 0.02359 ## TwoFragment 0 0 0 / 105 = 0.00000 0.00000 ## CrossOver 4 10 7 / 124 = 0.05645 0.06088 ## CrossAndInsert 1 2 0 / 96 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 90 = 0.02222 0.00536 # generation 22: best score out of 20: T0287.try7-al6 226.95479 cost/residue, 250 clashes 0.18069 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 29 = 0.10345 0.01451 ## JiggleSubtree 0 0 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 2 1 / 14 = 0.07143 0.02681 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 1 6 3 / 11 = 0.27273 0.01050 ## TweakPsiSubtree 0 22 11 / 27 = 0.40741 0.01194 ## TweakPsiSegment 0 8 5 / 16 = 0.31250 0.00471 ## TweakPsiPhiSubtree 2 17 5 / 25 = 0.20000 0.00946 ## TweakPsiPhiSegment 0 22 5 / 27 = 0.18519 0.00830 ## TweakHbondSubtree 0 20 11 / 36 = 0.30556 0.02980 ## TweakHbondSegment 0 11 5 / 23 = 0.21739 0.01169 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 3 / 14 = 0.21429 0.00118 ## OneRotamer 0 24 10 / 51 = 0.19608 0.03290 ## ClashingRotamer 0 2 1 / 33 = 0.03030 0.00337 ## ClusteredRotamer 0 6 1 / 37 = 0.02703 0.00026 ## ReduceBreak 2 7 2 / 111 = 0.01802 0.00350 ## CloseGap 0 17 14 / 227 = 0.06167 0.11693 ## HealGap 0 40 5 / 121 = 0.04132 0.01031 ## MoveGap 0 5 4 / 153 = 0.02614 0.04013 ## ReduceConstraint 0 3 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 477 = 0.01468 0.01859 ## InsertFragment 0 9 5 / 131 = 0.03817 0.02197 ## TwoFragment 0 0 0 / 106 = 0.00000 0.00000 ## CrossOver 5 10 7 / 126 = 0.05556 0.05992 ## CrossAndInsert 2 2 0 / 101 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 95 = 0.02105 0.00508 # Closing gap before 159 # generation 23: best score out of 20: T0287.try7-al6 226.63527 cost/residue, 249 clashes 0.18279 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 29 = 0.10345 0.01451 ## JiggleSubtree 0 1 1 / 10 = 0.10000 0.03195 ## JiggleSegment 0 2 1 / 16 = 0.06250 0.02346 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 1 6 3 / 15 = 0.20000 0.00770 ## TweakPsiSubtree 0 23 12 / 29 = 0.41379 0.01121 ## TweakPsiSegment 0 8 5 / 16 = 0.31250 0.00471 ## TweakPsiPhiSubtree 2 18 6 / 26 = 0.23077 0.00914 ## TweakPsiPhiSegment 0 23 5 / 30 = 0.16667 0.00747 ## TweakHbondSubtree 0 24 14 / 40 = 0.35000 0.03095 ## TweakHbondSegment 0 13 6 / 25 = 0.24000 0.01782 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 3 / 16 = 0.18750 0.00103 ## OneRotamer 0 26 11 / 56 = 0.19643 0.03086 ## ClashingRotamer 0 2 1 / 37 = 0.02703 0.00300 ## ClusteredRotamer 0 6 1 / 40 = 0.02500 0.00024 ## ReduceBreak 2 7 2 / 117 = 0.01709 0.00332 ## CloseGap 0 17 14 / 238 = 0.05882 0.11153 ## HealGap 0 41 6 / 124 = 0.04839 0.01112 ## MoveGap 0 5 4 / 154 = 0.02597 0.03986 ## ReduceConstraint 0 3 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 496 = 0.01411 0.01787 ## InsertFragment 0 9 5 / 137 = 0.03650 0.02101 ## TwoFragment 0 0 0 / 109 = 0.00000 0.00000 ## CrossOver 5 10 7 / 132 = 0.05303 0.05719 ## CrossAndInsert 2 2 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 101 = 0.01980 0.00477 # generation 24: best score out of 20: T0287.try7-al6 226.56557 cost/residue, 249 clashes 0.18488 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 3 / 30 = 0.10000 0.01402 ## JiggleSubtree 0 2 2 / 23 = 0.08696 0.01692 ## JiggleSegment 0 3 1 / 19 = 0.05263 0.01975 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 1 7 3 / 16 = 0.18750 0.00722 ## TweakPsiSubtree 0 25 12 / 31 = 0.38710 0.01049 ## TweakPsiSegment 0 8 5 / 16 = 0.31250 0.00471 ## TweakPsiPhiSubtree 2 18 6 / 26 = 0.23077 0.00914 ## TweakPsiPhiSegment 0 24 5 / 31 = 0.16129 0.00723 ## TweakHbondSubtree 0 25 14 / 44 = 0.31818 0.02814 ## TweakHbondSegment 0 14 6 / 28 = 0.21429 0.01591 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 3 / 16 = 0.18750 0.00103 ## OneRotamer 0 27 11 / 61 = 0.18033 0.02833 ## ClashingRotamer 0 2 1 / 39 = 0.02564 0.00285 ## ClusteredRotamer 1 6 1 / 40 = 0.02500 0.00024 ## ReduceBreak 2 7 2 / 125 = 0.01600 0.00311 ## CloseGap 0 17 14 / 243 = 0.05761 0.10923 ## HealGap 0 41 6 / 130 = 0.04615 0.01061 ## MoveGap 0 5 4 / 159 = 0.02516 0.03861 ## ReduceConstraint 0 3 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 514 = 0.01362 0.01725 ## InsertFragment 0 9 5 / 141 = 0.03546 0.02041 ## TwoFragment 0 0 0 / 113 = 0.00000 0.00000 ## CrossOver 5 10 7 / 135 = 0.05185 0.05592 ## CrossAndInsert 2 2 0 / 108 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 105 = 0.01905 0.00459 # generation 25: best score out of 20: T0287.try7-al6 226.49599 cost/residue, 257 clashes 0.18021 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 3 / 33 = 0.09091 0.01275 ## JiggleSubtree 0 3 2 / 24 = 0.08333 0.01622 ## JiggleSegment 0 4 2 / 27 = 0.07407 0.01968 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 1 7 3 / 17 = 0.17647 0.00680 ## TweakPsiSubtree 0 26 12 / 32 = 0.37500 0.01016 ## TweakPsiSegment 0 8 5 / 19 = 0.26316 0.00397 ## TweakPsiPhiSubtree 2 18 6 / 28 = 0.21429 0.00849 ## TweakPsiPhiSegment 0 24 5 / 31 = 0.16129 0.00723 ## TweakHbondSubtree 0 27 14 / 47 = 0.29787 0.02634 ## TweakHbondSegment 0 16 6 / 31 = 0.19355 0.01437 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 3 / 16 = 0.18750 0.00103 ## OneRotamer 0 29 11 / 64 = 0.17188 0.02700 ## ClashingRotamer 0 2 1 / 39 = 0.02564 0.00285 ## ClusteredRotamer 1 6 1 / 42 = 0.02381 0.00023 ## ReduceBreak 2 8 3 / 129 = 0.02326 0.00355 ## CloseGap 0 17 14 / 253 = 0.05534 0.10491 ## HealGap 0 43 8 / 135 = 0.05926 0.01187 ## MoveGap 0 5 4 / 164 = 0.02439 0.03743 ## ReduceConstraint 0 3 0 / 110 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 533 = 0.01313 0.01663 ## InsertFragment 0 9 5 / 144 = 0.03472 0.01999 ## TwoFragment 0 0 0 / 119 = 0.00000 0.00000 ## CrossOver 6 10 7 / 139 = 0.05036 0.05431 ## CrossAndInsert 2 2 0 / 113 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 108 = 0.01852 0.00447 # Closing gap before 11 next to short segment # generation 26: best score out of 20: T0287.try7-al6 226.17523 cost/residue, 249 clashes 0.16478 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 3 / 34 = 0.08824 0.01237 ## JiggleSubtree 0 3 2 / 25 = 0.08000 0.01557 ## JiggleSegment 0 5 2 / 30 = 0.06667 0.01771 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 10 = 0.10000 0.00000 ## TweakPhiSegment 1 7 3 / 19 = 0.15789 0.00608 ## TweakPsiSubtree 0 26 12 / 32 = 0.37500 0.01016 ## TweakPsiSegment 0 8 5 / 19 = 0.26316 0.00397 ## TweakPsiPhiSubtree 3 18 6 / 28 = 0.21429 0.00849 ## TweakPsiPhiSegment 0 25 6 / 32 = 0.18750 0.01301 ## TweakHbondSubtree 0 30 15 / 51 = 0.29412 0.03072 ## TweakHbondSegment 0 17 7 / 33 = 0.21212 0.01701 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 5 / 19 = 0.26316 0.00136 ## OneRotamer 0 32 14 / 70 = 0.20000 0.03030 ## ClashingRotamer 0 2 1 / 39 = 0.02564 0.00285 ## ClusteredRotamer 1 6 1 / 42 = 0.02381 0.00023 ## ReduceBreak 2 8 3 / 133 = 0.02256 0.00345 ## CloseGap 0 18 15 / 264 = 0.05682 0.10057 ## HealGap 0 44 9 / 145 = 0.06207 0.01195 ## MoveGap 0 5 4 / 169 = 0.02367 0.03633 ## ReduceConstraint 0 3 0 / 113 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 551 = 0.01270 0.01609 ## InsertFragment 0 9 5 / 148 = 0.03378 0.01945 ## TwoFragment 0 0 0 / 122 = 0.00000 0.00000 ## CrossOver 6 11 8 / 148 = 0.05405 0.05229 ## CrossAndInsert 2 2 0 / 116 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 113 = 0.01770 0.00427 # generation 27: best score out of 20: T0287.try7-al6 226.17297 cost/residue, 249 clashes 0.16478 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 3 / 36 = 0.08333 0.01169 ## JiggleSubtree 0 3 2 / 27 = 0.07407 0.01442 ## JiggleSegment 0 7 2 / 34 = 0.05882 0.01563 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 10 = 0.10000 0.00000 ## TweakPhiSegment 1 7 3 / 19 = 0.15789 0.00608 ## TweakPsiSubtree 0 26 12 / 32 = 0.37500 0.01016 ## TweakPsiSegment 0 9 5 / 20 = 0.25000 0.00377 ## TweakPsiPhiSubtree 4 18 6 / 28 = 0.21429 0.00849 ## TweakPsiPhiSegment 0 26 6 / 35 = 0.17143 0.01189 ## TweakHbondSubtree 0 32 15 / 58 = 0.25862 0.02701 ## TweakHbondSegment 0 19 7 / 37 = 0.18919 0.01517 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 6 / 20 = 0.30000 0.00140 ## OneRotamer 0 34 14 / 74 = 0.18919 0.02866 ## ClashingRotamer 0 2 1 / 40 = 0.02500 0.00278 ## ClusteredRotamer 2 6 1 / 42 = 0.02381 0.00023 ## ReduceBreak 2 8 3 / 136 = 0.02206 0.00337 ## CloseGap 0 18 15 / 267 = 0.05618 0.09944 ## HealGap 0 44 9 / 152 = 0.05921 0.01140 ## MoveGap 0 5 4 / 176 = 0.02273 0.03488 ## ReduceConstraint 0 3 0 / 119 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 570 = 0.01228 0.01555 ## InsertFragment 0 9 5 / 153 = 0.03268 0.01881 ## TwoFragment 0 0 0 / 126 = 0.00000 0.00000 ## CrossOver 7 11 8 / 153 = 0.05229 0.05059 ## CrossAndInsert 2 2 0 / 119 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 118 = 0.01695 0.00409 # generation 28: best score out of 20: T0287.try7-al6 226.17297 cost/residue, 249 clashes 0.16478 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 4 / 37 = 0.10811 0.01145 ## JiggleSubtree 0 3 2 / 28 = 0.07143 0.01390 ## JiggleSegment 0 7 2 / 39 = 0.05128 0.01362 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 1 / 12 = 0.08333 0.00000 ## TweakPhiSegment 1 7 3 / 21 = 0.14286 0.00550 ## TweakPsiSubtree 0 28 12 / 34 = 0.35294 0.00956 ## TweakPsiSegment 0 9 5 / 20 = 0.25000 0.00377 ## TweakPsiPhiSubtree 4 19 6 / 29 = 0.20690 0.00820 ## TweakPsiPhiSegment 0 29 9 / 39 = 0.23077 0.01179 ## TweakHbondSubtree 0 35 16 / 62 = 0.25806 0.02552 ## TweakHbondSegment 0 19 7 / 39 = 0.17949 0.01440 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 6 / 20 = 0.30000 0.00140 ## OneRotamer 0 35 14 / 77 = 0.18182 0.02755 ## ClashingRotamer 0 2 1 / 40 = 0.02500 0.00278 ## ClusteredRotamer 2 6 1 / 45 = 0.02222 0.00021 ## ReduceBreak 2 8 3 / 139 = 0.02158 0.00330 ## CloseGap 0 18 15 / 275 = 0.05455 0.09655 ## HealGap 0 44 9 / 161 = 0.05590 0.01077 ## MoveGap 0 5 4 / 181 = 0.02210 0.03392 ## ReduceConstraint 0 3 0 / 125 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 584 = 0.01199 0.01518 ## InsertFragment 0 9 5 / 159 = 0.03145 0.01810 ## TwoFragment 0 0 0 / 130 = 0.00000 0.00000 ## CrossOver 7 11 8 / 160 = 0.05000 0.04837 ## CrossAndInsert 2 2 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 122 = 0.01639 0.00395 # Closing gap before 14 # Closing gap before 159 without wiggling. # generation 29: best score out of 20: T0287.try7-al6 225.86566 cost/residue, 246 clashes 0.16478 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 4 / 37 = 0.10811 0.01145 ## JiggleSubtree 0 4 3 / 32 = 0.09375 0.01709 ## JiggleSegment 0 7 2 / 39 = 0.05128 0.01362 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 1 / 12 = 0.08333 0.00000 ## TweakPhiSegment 1 7 3 / 21 = 0.14286 0.00550 ## TweakPsiSubtree 0 29 13 / 36 = 0.36111 0.00904 ## TweakPsiSegment 0 10 5 / 21 = 0.23810 0.00359 ## TweakPsiPhiSubtree 4 19 6 / 29 = 0.20690 0.00820 ## TweakPsiPhiSegment 0 32 9 / 43 = 0.20930 0.01070 ## TweakHbondSubtree 0 37 17 / 69 = 0.24638 0.02539 ## TweakHbondSegment 0 20 9 / 44 = 0.20455 0.01326 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 7 / 21 = 0.33333 0.00186 ## OneRotamer 0 38 15 / 84 = 0.17857 0.02894 ## ClashingRotamer 0 2 1 / 42 = 0.02381 0.00264 ## ClusteredRotamer 2 6 1 / 45 = 0.02222 0.00021 ## ReduceBreak 2 8 3 / 142 = 0.02113 0.00323 ## CloseGap 0 18 15 / 280 = 0.05357 0.09483 ## HealGap 0 44 9 / 168 = 0.05357 0.01032 ## MoveGap 0 5 4 / 187 = 0.02139 0.03283 ## ReduceConstraint 0 3 0 / 127 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 601 = 0.01165 0.01475 ## InsertFragment 0 9 5 / 164 = 0.03049 0.01755 ## TwoFragment 0 0 0 / 135 = 0.00000 0.00000 ## CrossOver 7 11 8 / 169 = 0.04734 0.04580 ## CrossAndInsert 2 2 0 / 126 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 124 = 0.01613 0.00389 # Closing gap before 159 # Healing gap before (T0287)A166 residual break only 8.5176833e-02 # generation 30: best score out of 20: T0287.try7-al6 225.86566 cost/residue, 246 clashes 0.16478 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 4 / 37 = 0.10811 0.01145 ## JiggleSubtree 0 4 3 / 36 = 0.08333 0.01519 ## JiggleSegment 0 8 2 / 42 = 0.04762 0.01265 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 2 / 13 = 0.15385 0.00761 ## TweakPhiSegment 1 8 3 / 22 = 0.13636 0.00525 ## TweakPsiSubtree 0 30 13 / 37 = 0.35135 0.00879 ## TweakPsiSegment 0 10 5 / 21 = 0.23810 0.00359 ## TweakPsiPhiSubtree 4 21 6 / 32 = 0.18750 0.00743 ## TweakPsiPhiSegment 0 32 9 / 46 = 0.19565 0.01000 ## TweakHbondSubtree 0 38 17 / 72 = 0.23611 0.02434 ## TweakHbondSegment 0 22 10 / 48 = 0.20833 0.01299 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 7 / 22 = 0.31818 0.00177 ## OneRotamer 0 39 16 / 89 = 0.17978 0.02982 ## ClashingRotamer 0 2 1 / 43 = 0.02326 0.00258 ## ClusteredRotamer 2 6 1 / 46 = 0.02174 0.00021 ## ReduceBreak 2 8 3 / 146 = 0.02055 0.00314 ## CloseGap 0 18 15 / 292 = 0.05137 0.09093 ## HealGap 0 45 9 / 176 = 0.05114 0.00985 ## MoveGap 0 5 4 / 191 = 0.02094 0.03214 ## ReduceConstraint 0 3 0 / 130 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 617 = 0.01135 0.01437 ## InsertFragment 0 9 5 / 168 = 0.02976 0.01713 ## TwoFragment 0 0 0 / 137 = 0.00000 0.00000 ## CrossOver 7 13 10 / 178 = 0.05618 0.04421 ## CrossAndInsert 2 2 0 / 127 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 129 = 0.01550 0.00374 # generation 31: best score out of 20: T0287.try7-al6 225.69270 cost/residue, 249 clashes 0.18406 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 4 / 38 = 0.10526 0.01115 ## JiggleSubtree 0 4 3 / 40 = 0.07500 0.01367 ## JiggleSegment 0 8 2 / 46 = 0.04348 0.01155 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 5 / 19 = 0.26316 0.01610 ## TweakPhiSegment 1 8 3 / 22 = 0.13636 0.00525 ## TweakPsiSubtree 0 31 13 / 38 = 0.34211 0.00856 ## TweakPsiSegment 0 11 6 / 22 = 0.27273 0.00574 ## TweakPsiPhiSubtree 5 22 6 / 33 = 0.18182 0.00720 ## TweakPsiPhiSegment 0 35 9 / 49 = 0.18367 0.00939 ## TweakHbondSubtree 0 38 17 / 74 = 0.22973 0.02368 ## TweakHbondSegment 0 23 11 / 52 = 0.21154 0.01558 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 7 / 24 = 0.29167 0.00162 ## OneRotamer 0 40 17 / 94 = 0.18085 0.03012 ## ClashingRotamer 0 2 1 / 43 = 0.02326 0.00258 ## ClusteredRotamer 2 6 1 / 48 = 0.02083 0.00020 ## ReduceBreak 2 8 3 / 147 = 0.02041 0.00312 ## CloseGap 0 18 15 / 297 = 0.05051 0.08940 ## HealGap 0 45 9 / 178 = 0.05056 0.00974 ## MoveGap 0 5 4 / 200 = 0.02000 0.03070 ## ReduceConstraint 0 3 0 / 134 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 638 = 0.01097 0.01390 ## InsertFragment 0 9 5 / 171 = 0.02924 0.01683 ## TwoFragment 0 0 0 / 139 = 0.00000 0.00000 ## CrossOver 7 13 10 / 184 = 0.05435 0.04276 ## CrossAndInsert 2 2 0 / 129 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 134 = 0.01493 0.00360 # generation 32: best score out of 20: T0287.try7-al6 225.59047 cost/residue, 247 clashes 0.16632 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 4 / 39 = 0.10256 0.01086 ## JiggleSubtree 0 4 3 / 44 = 0.06818 0.01243 ## JiggleSegment 0 8 2 / 46 = 0.04348 0.01155 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 16 6 / 24 = 0.25000 0.01275 ## TweakPhiSegment 1 8 3 / 22 = 0.13636 0.00525 ## TweakPsiSubtree 0 31 13 / 40 = 0.32500 0.00813 ## TweakPsiSegment 0 11 6 / 24 = 0.25000 0.00526 ## TweakPsiPhiSubtree 5 24 6 / 35 = 0.17143 0.00679 ## TweakPsiPhiSegment 1 35 9 / 49 = 0.18367 0.00939 ## TweakHbondSubtree 0 39 17 / 76 = 0.22368 0.02305 ## TweakHbondSegment 0 24 11 / 53 = 0.20755 0.01528 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 7 / 27 = 0.25926 0.00144 ## OneRotamer 0 43 19 / 104 = 0.18269 0.02844 ## ClashingRotamer 0 2 1 / 43 = 0.02326 0.00258 ## ClusteredRotamer 2 6 1 / 48 = 0.02083 0.00020 ## ReduceBreak 2 8 3 / 153 = 0.01961 0.00300 ## CloseGap 0 18 15 / 303 = 0.04950 0.08763 ## HealGap 0 46 9 / 189 = 0.04762 0.00917 ## MoveGap 0 5 4 / 205 = 0.01951 0.02995 ## ReduceConstraint 0 3 0 / 135 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 651 = 0.01075 0.01362 ## InsertFragment 0 9 5 / 178 = 0.02809 0.01617 ## TwoFragment 0 0 0 / 142 = 0.00000 0.00000 ## CrossOver 7 13 10 / 190 = 0.05263 0.04141 ## CrossAndInsert 3 2 0 / 132 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 137 = 0.01460 0.00352 # Closing gap before 151 # Closing gap before 46 # generation 33: best score out of 20: T0287.try7-al6 225.51106 cost/residue, 247 clashes 0.16501 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 4 / 42 = 0.09524 0.01009 ## JiggleSubtree 0 4 3 / 47 = 0.06383 0.01163 ## JiggleSegment 0 8 2 / 49 = 0.04082 0.01084 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 17 7 / 26 = 0.26923 0.01558 ## TweakPhiSegment 1 9 4 / 24 = 0.16667 0.00941 ## TweakPsiSubtree 0 31 13 / 40 = 0.32500 0.00813 ## TweakPsiSegment 0 13 7 / 27 = 0.25926 0.00563 ## TweakPsiPhiSubtree 5 24 6 / 35 = 0.17143 0.00679 ## TweakPsiPhiSegment 1 36 9 / 51 = 0.17647 0.00902 ## TweakHbondSubtree 0 42 19 / 86 = 0.22093 0.02185 ## TweakHbondSegment 0 24 11 / 57 = 0.19298 0.01421 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 7 / 27 = 0.25926 0.00144 ## OneRotamer 0 43 20 / 109 = 0.18349 0.02738 ## ClashingRotamer 0 2 1 / 46 = 0.02174 0.00241 ## ClusteredRotamer 2 6 1 / 50 = 0.02000 0.00019 ## ReduceBreak 2 8 3 / 157 = 0.01911 0.00292 ## CloseGap 0 18 15 / 313 = 0.04792 0.08483 ## HealGap 0 47 9 / 193 = 0.04663 0.00898 ## MoveGap 0 5 4 / 210 = 0.01905 0.02923 ## ReduceConstraint 0 3 0 / 139 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 662 = 0.01057 0.01339 ## InsertFragment 0 9 5 / 185 = 0.02703 0.01556 ## TwoFragment 0 0 0 / 143 = 0.00000 0.00000 ## CrossOver 7 14 10 / 195 = 0.05128 0.04035 ## CrossAndInsert 3 2 0 / 134 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 141 = 0.01418 0.00342 # generation 34: best score out of 20: T0287.try7-al6 225.44714 cost/residue, 246 clashes 0.16561 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 4 / 44 = 0.09091 0.00963 ## JiggleSubtree 0 4 3 / 53 = 0.05660 0.01032 ## JiggleSegment 0 8 2 / 52 = 0.03846 0.01022 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 1 19 7 / 31 = 0.22581 0.01307 ## TweakPhiSegment 1 9 4 / 25 = 0.16000 0.00904 ## TweakPsiSubtree 0 32 14 / 42 = 0.33333 0.00822 ## TweakPsiSegment 0 13 7 / 29 = 0.24138 0.00524 ## TweakPsiPhiSubtree 5 25 6 / 36 = 0.16667 0.00660 ## TweakPsiPhiSegment 1 40 11 / 57 = 0.19298 0.00939 ## TweakHbondSubtree 0 44 21 / 91 = 0.23077 0.02155 ## TweakHbondSegment 0 26 12 / 60 = 0.20000 0.01456 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 7 / 27 = 0.25926 0.00144 ## OneRotamer 0 43 20 / 113 = 0.17699 0.02641 ## ClashingRotamer 0 2 1 / 46 = 0.02174 0.00241 ## ClusteredRotamer 2 6 1 / 51 = 0.01961 0.00019 ## ReduceBreak 2 8 3 / 158 = 0.01899 0.00290 ## CloseGap 0 18 15 / 321 = 0.04673 0.08271 ## HealGap 0 48 9 / 199 = 0.04523 0.00871 ## MoveGap 0 5 4 / 213 = 0.01878 0.02882 ## ReduceConstraint 0 3 0 / 141 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 680 = 0.01029 0.01304 ## InsertFragment 0 9 5 / 189 = 0.02646 0.01523 ## TwoFragment 0 0 0 / 146 = 0.00000 0.00000 ## CrossOver 7 14 10 / 199 = 0.05025 0.03954 ## CrossAndInsert 3 2 0 / 137 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 144 = 0.01389 0.00335 # generation 35: best score out of 20: T0287.try7-al6 225.44714 cost/residue, 246 clashes 0.16561 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 4 / 45 = 0.08889 0.00941 ## JiggleSubtree 0 4 3 / 55 = 0.05455 0.00994 ## JiggleSegment 0 8 3 / 57 = 0.05263 0.00941 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 21 7 / 35 = 0.20000 0.01157 ## TweakPhiSegment 2 13 4 / 33 = 0.12121 0.00685 ## TweakPsiSubtree 0 33 15 / 49 = 0.30612 0.00712 ## TweakPsiSegment 0 14 7 / 31 = 0.22581 0.00490 ## TweakPsiPhiSubtree 5 25 6 / 36 = 0.16667 0.00660 ## TweakPsiPhiSegment 1 40 11 / 58 = 0.18966 0.00922 ## TweakHbondSubtree 0 44 21 / 92 = 0.22826 0.02132 ## TweakHbondSegment 0 27 12 / 66 = 0.18182 0.01324 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 15 8 / 29 = 0.27586 0.00144 ## OneRotamer 0 46 20 / 120 = 0.16667 0.02487 ## ClashingRotamer 0 2 1 / 46 = 0.02174 0.00241 ## ClusteredRotamer 2 7 2 / 52 = 0.03846 0.00068 ## ReduceBreak 2 8 3 / 160 = 0.01875 0.00287 ## CloseGap 0 18 15 / 324 = 0.04630 0.08195 ## HealGap 0 49 9 / 206 = 0.04369 0.00841 ## MoveGap 0 5 4 / 216 = 0.01852 0.02842 ## ReduceConstraint 0 3 0 / 145 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 693 = 0.01010 0.01279 ## InsertFragment 0 9 5 / 195 = 0.02564 0.01476 ## TwoFragment 0 0 0 / 150 = 0.00000 0.00000 ## CrossOver 7 14 10 / 201 = 0.04975 0.03915 ## CrossAndInsert 3 2 0 / 140 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 145 = 0.01379 0.00333 # Closing gap before 159 # generation 36: best score out of 20: T0287.try7-al6 225.34485 cost/residue, 249 clashes 0.16473 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 4 / 45 = 0.08889 0.00941 ## JiggleSubtree 0 4 3 / 61 = 0.04918 0.00896 ## JiggleSegment 0 8 3 / 60 = 0.05000 0.00894 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 25 8 / 42 = 0.19048 0.01121 ## TweakPhiSegment 2 13 4 / 36 = 0.11111 0.00628 ## TweakPsiSubtree 0 35 16 / 51 = 0.31373 0.00864 ## TweakPsiSegment 0 15 7 / 35 = 0.20000 0.00434 ## TweakPsiPhiSubtree 5 26 6 / 38 = 0.15789 0.00625 ## TweakPsiPhiSegment 1 40 11 / 60 = 0.18333 0.00892 ## TweakHbondSubtree 0 48 24 / 98 = 0.24490 0.02332 ## TweakHbondSegment 0 28 13 / 69 = 0.18841 0.01300 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 15 8 / 31 = 0.25806 0.00135 ## OneRotamer 0 47 20 / 126 = 0.15873 0.02368 ## ClashingRotamer 0 2 1 / 46 = 0.02174 0.00241 ## ClusteredRotamer 2 7 2 / 55 = 0.03636 0.00064 ## ReduceBreak 2 9 4 / 167 = 0.02395 0.00336 ## CloseGap 0 18 15 / 331 = 0.04532 0.08022 ## HealGap 0 49 9 / 209 = 0.04306 0.00829 ## MoveGap 0 5 4 / 220 = 0.01818 0.02791 ## ReduceConstraint 0 3 0 / 151 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 700 = 0.01000 0.01267 ## InsertFragment 0 9 5 / 198 = 0.02525 0.01454 ## TwoFragment 0 0 0 / 153 = 0.00000 0.00000 ## CrossOver 7 14 10 / 203 = 0.04926 0.03876 ## CrossAndInsert 3 2 0 / 144 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 150 = 0.01333 0.00321 # Closing gap before 159 without wiggling. # generation 37: best score out of 20: T0287.try7-al6 225.13037 cost/residue, 243 clashes 0.16618 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 4 / 45 = 0.08889 0.00941 ## JiggleSubtree 0 4 3 / 64 = 0.04688 0.00854 ## JiggleSegment 0 9 3 / 64 = 0.04688 0.00838 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 3 27 9 / 47 = 0.19149 0.01147 ## TweakPhiSegment 2 13 4 / 39 = 0.10256 0.00579 ## TweakPsiSubtree 0 38 18 / 55 = 0.32727 0.00896 ## TweakPsiSegment 0 15 7 / 35 = 0.20000 0.00434 ## TweakPsiPhiSubtree 6 26 6 / 41 = 0.14634 0.00580 ## TweakPsiPhiSegment 1 42 12 / 62 = 0.19355 0.01069 ## TweakHbondSubtree 0 50 25 / 103 = 0.24272 0.02462 ## TweakHbondSegment 0 28 13 / 73 = 0.17808 0.01229 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 16 8 / 32 = 0.25000 0.00130 ## OneRotamer 0 48 20 / 131 = 0.15267 0.02278 ## ClashingRotamer 0 2 1 / 46 = 0.02174 0.00241 ## ClusteredRotamer 2 7 2 / 58 = 0.03448 0.00061 ## ReduceBreak 2 9 4 / 169 = 0.02367 0.00332 ## CloseGap 0 19 15 / 340 = 0.04412 0.07809 ## HealGap 0 50 10 / 215 = 0.04651 0.00807 ## MoveGap 0 5 4 / 223 = 0.01794 0.02753 ## ReduceConstraint 0 3 0 / 156 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 709 = 0.00987 0.01250 ## InsertFragment 0 9 5 / 200 = 0.02500 0.01439 ## TwoFragment 0 0 0 / 158 = 0.00000 0.00000 ## CrossOver 7 14 10 / 208 = 0.04808 0.03783 ## CrossAndInsert 3 2 0 / 151 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 154 = 0.01299 0.00313 # generation 38: best score out of 20: T0287.try7-al6 224.82494 cost/residue, 242 clashes 0.16618 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 47 = 0.10638 0.00967 ## JiggleSubtree 0 4 3 / 66 = 0.04545 0.00828 ## JiggleSegment 0 9 3 / 65 = 0.04615 0.00825 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 3 28 10 / 51 = 0.19608 0.01087 ## TweakPhiSegment 2 13 4 / 42 = 0.09524 0.00538 ## TweakPsiSubtree 0 42 21 / 64 = 0.32812 0.00803 ## TweakPsiSegment 0 15 7 / 35 = 0.20000 0.00434 ## TweakPsiPhiSubtree 6 26 6 / 41 = 0.14634 0.00580 ## TweakPsiPhiSegment 2 43 13 / 63 = 0.20635 0.01062 ## TweakHbondSubtree 0 53 27 / 110 = 0.24545 0.02632 ## TweakHbondSegment 1 29 14 / 79 = 0.17722 0.01190 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 19 8 / 37 = 0.21622 0.00113 ## OneRotamer 0 50 23 / 138 = 0.16667 0.02427 ## ClashingRotamer 0 2 1 / 49 = 0.02041 0.00227 ## ClusteredRotamer 2 7 2 / 59 = 0.03390 0.00060 ## ReduceBreak 2 9 4 / 171 = 0.02339 0.00328 ## CloseGap 0 19 15 / 343 = 0.04373 0.07741 ## HealGap 0 50 10 / 219 = 0.04566 0.00792 ## MoveGap 0 5 4 / 228 = 0.01754 0.02693 ## ReduceConstraint 0 3 0 / 159 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 724 = 0.00967 0.01225 ## InsertFragment 0 9 5 / 204 = 0.02451 0.01411 ## TwoFragment 0 0 0 / 160 = 0.00000 0.00000 ## CrossOver 7 14 10 / 211 = 0.04739 0.03729 ## CrossAndInsert 3 2 0 / 153 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 158 = 0.01266 0.00305 # generation 39: best score out of 20: T0287.try7-al6 224.67406 cost/residue, 237 clashes 0.16727 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 51 = 0.09804 0.00891 ## JiggleSubtree 0 4 3 / 68 = 0.04412 0.00804 ## JiggleSegment 0 9 3 / 67 = 0.04478 0.00800 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 3 28 10 / 52 = 0.19231 0.01066 ## TweakPhiSegment 2 14 4 / 45 = 0.08889 0.00502 ## TweakPsiSubtree 0 43 21 / 66 = 0.31818 0.00779 ## TweakPsiSegment 0 16 7 / 37 = 0.18919 0.00411 ## TweakPsiPhiSubtree 6 28 7 / 43 = 0.16279 0.00556 ## TweakPsiPhiSegment 2 44 14 / 66 = 0.21212 0.01093 ## TweakHbondSubtree 0 57 28 / 121 = 0.23140 0.02518 ## TweakHbondSegment 1 30 14 / 81 = 0.17284 0.01160 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 19 8 / 38 = 0.21053 0.00110 ## OneRotamer 0 53 26 / 147 = 0.17687 0.02590 ## ClashingRotamer 0 2 1 / 49 = 0.02041 0.00227 ## ClusteredRotamer 2 7 2 / 60 = 0.03333 0.00059 ## ReduceBreak 2 9 4 / 176 = 0.02273 0.00319 ## CloseGap 0 19 15 / 347 = 0.04323 0.07652 ## HealGap 0 50 10 / 223 = 0.04484 0.00778 ## MoveGap 0 5 4 / 229 = 0.01747 0.02681 ## ReduceConstraint 0 3 0 / 164 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 736 = 0.00951 0.01205 ## InsertFragment 0 9 5 / 208 = 0.02404 0.01384 ## TwoFragment 0 0 0 / 164 = 0.00000 0.00000 ## CrossOver 7 14 10 / 213 = 0.04695 0.03694 ## CrossAndInsert 3 2 0 / 157 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 164 = 0.01220 0.00294 # generation 40: best score out of 20: T0287.try7-al6 224.67406 cost/residue, 237 clashes 0.16727 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 51 = 0.09804 0.00891 ## JiggleSubtree 0 4 3 / 69 = 0.04348 0.00792 ## JiggleSegment 0 9 3 / 68 = 0.04412 0.00788 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 3 31 10 / 58 = 0.17241 0.00956 ## TweakPhiSegment 2 14 4 / 47 = 0.08511 0.00481 ## TweakPsiSubtree 0 47 21 / 70 = 0.30000 0.00734 ## TweakPsiSegment 0 17 7 / 39 = 0.17949 0.00390 ## TweakPsiPhiSubtree 6 28 7 / 43 = 0.16279 0.00556 ## TweakPsiPhiSegment 2 44 14 / 67 = 0.20896 0.01077 ## TweakHbondSubtree 0 59 29 / 132 = 0.21970 0.02327 ## TweakHbondSegment 1 30 14 / 86 = 0.16279 0.01093 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 19 8 / 38 = 0.21053 0.00110 ## OneRotamer 0 56 26 / 153 = 0.16993 0.02489 ## ClashingRotamer 0 2 1 / 49 = 0.02041 0.00227 ## ClusteredRotamer 2 7 2 / 62 = 0.03226 0.00057 ## ReduceBreak 2 9 4 / 181 = 0.02210 0.00310 ## CloseGap 0 19 15 / 353 = 0.04249 0.07522 ## HealGap 0 50 10 / 224 = 0.04464 0.00774 ## MoveGap 0 5 4 / 236 = 0.01695 0.02601 ## ReduceConstraint 0 3 0 / 167 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 749 = 0.00935 0.01184 ## InsertFragment 0 9 5 / 210 = 0.02381 0.01371 ## TwoFragment 0 0 0 / 169 = 0.00000 0.00000 ## CrossOver 7 14 10 / 217 = 0.04608 0.03626 ## CrossAndInsert 3 2 0 / 160 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 172 = 0.01163 0.00280 # generation 41: best score out of 20: T0287.try7-al6 224.45541 cost/residue, 238 clashes 0.16641 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 52 = 0.09615 0.00874 ## JiggleSubtree 0 5 3 / 73 = 0.04110 0.00749 ## JiggleSegment 0 9 3 / 68 = 0.04412 0.00788 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 5 34 11 / 61 = 0.18033 0.01027 ## TweakPhiSegment 2 14 4 / 48 = 0.08333 0.00471 ## TweakPsiSubtree 0 47 21 / 70 = 0.30000 0.00734 ## TweakPsiSegment 0 18 7 / 40 = 0.17500 0.00380 ## TweakPsiPhiSubtree 6 28 7 / 43 = 0.16279 0.00556 ## TweakPsiPhiSegment 2 45 15 / 70 = 0.21429 0.01062 ## TweakHbondSubtree 0 61 30 / 142 = 0.21127 0.02168 ## TweakHbondSegment 1 32 14 / 90 = 0.15556 0.01044 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 19 8 / 38 = 0.21053 0.00110 ## OneRotamer 0 57 27 / 157 = 0.17197 0.02496 ## ClashingRotamer 0 2 1 / 50 = 0.02000 0.00222 ## ClusteredRotamer 2 8 3 / 64 = 0.04688 0.00629 ## ReduceBreak 2 9 4 / 183 = 0.02186 0.00306 ## CloseGap 0 20 15 / 365 = 0.04110 0.07274 ## HealGap 0 50 10 / 229 = 0.04367 0.00758 ## MoveGap 0 5 4 / 241 = 0.01660 0.02547 ## ReduceConstraint 0 3 0 / 170 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 764 = 0.00916 0.01160 ## InsertFragment 0 9 5 / 215 = 0.02326 0.01339 ## TwoFragment 0 0 0 / 172 = 0.00000 0.00000 ## CrossOver 7 14 10 / 222 = 0.04505 0.03544 ## CrossAndInsert 3 2 0 / 165 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 173 = 0.01156 0.00279 # generation 42: best score out of 20: T0287.try7-al6 224.45541 cost/residue, 238 clashes 0.16641 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 55 = 0.09091 0.00826 ## JiggleSubtree 0 5 3 / 74 = 0.04054 0.00739 ## JiggleSegment 0 9 3 / 70 = 0.04286 0.00766 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 5 35 11 / 63 = 0.17460 0.00994 ## TweakPhiSegment 2 14 4 / 49 = 0.08163 0.00461 ## TweakPsiSubtree 0 48 22 / 73 = 0.30137 0.00707 ## TweakPsiSegment 0 19 7 / 41 = 0.17073 0.00371 ## TweakPsiPhiSubtree 6 29 7 / 44 = 0.15909 0.00543 ## TweakPsiPhiSegment 3 47 15 / 76 = 0.19737 0.00978 ## TweakHbondSubtree 0 64 32 / 148 = 0.21622 0.02100 ## TweakHbondSegment 1 32 14 / 93 = 0.15054 0.01011 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 38 = 0.21053 0.00110 ## OneRotamer 0 60 28 / 166 = 0.16867 0.02433 ## ClashingRotamer 0 2 1 / 50 = 0.02000 0.00222 ## ClusteredRotamer 2 9 4 / 72 = 0.05556 0.01064 ## ReduceBreak 2 9 4 / 187 = 0.02139 0.00300 ## CloseGap 0 20 15 / 370 = 0.04054 0.07176 ## HealGap 0 50 10 / 233 = 0.04292 0.00745 ## MoveGap 0 5 4 / 245 = 0.01633 0.02506 ## ReduceConstraint 1 3 0 / 173 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 768 = 0.00911 0.01154 ## InsertFragment 0 9 5 / 219 = 0.02283 0.01314 ## TwoFragment 0 0 0 / 173 = 0.00000 0.00000 ## CrossOver 7 14 10 / 232 = 0.04310 0.03392 ## CrossAndInsert 3 2 0 / 166 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 180 = 0.01111 0.00268 # Closing gap before 159 without wiggling. # Closing gap before 159 without wiggling. # generation 43: best score out of 20: T0287.try7-al6 224.29321 cost/residue, 244 clashes 0.16534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 55 = 0.09091 0.00826 ## JiggleSubtree 0 5 3 / 75 = 0.04000 0.00729 ## JiggleSegment 0 10 4 / 71 = 0.05634 0.00877 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 6 38 11 / 74 = 0.14865 0.00847 ## TweakPhiSegment 2 14 4 / 50 = 0.08000 0.00452 ## TweakPsiSubtree 0 49 22 / 76 = 0.28947 0.00679 ## TweakPsiSegment 0 19 7 / 43 = 0.16279 0.00353 ## TweakPsiPhiSubtree 6 29 7 / 44 = 0.15909 0.00543 ## TweakPsiPhiSegment 5 51 15 / 83 = 0.18072 0.00896 ## TweakHbondSubtree 0 66 32 / 155 = 0.20645 0.02005 ## TweakHbondSegment 1 34 16 / 98 = 0.16327 0.00983 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 38 = 0.21053 0.00110 ## OneRotamer 0 61 29 / 175 = 0.16571 0.02327 ## ClashingRotamer 0 2 1 / 51 = 0.01961 0.00218 ## ClusteredRotamer 2 9 4 / 77 = 0.05195 0.00995 ## ReduceBreak 2 9 4 / 189 = 0.02116 0.00297 ## CloseGap 0 20 15 / 375 = 0.04000 0.07080 ## HealGap 0 50 10 / 240 = 0.04167 0.00723 ## MoveGap 0 5 4 / 248 = 0.01613 0.02475 ## ReduceConstraint 1 3 0 / 174 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 781 = 0.00896 0.01135 ## InsertFragment 0 9 5 / 222 = 0.02252 0.01296 ## TwoFragment 0 0 0 / 178 = 0.00000 0.00000 ## CrossOver 7 14 10 / 234 = 0.04274 0.03363 ## CrossAndInsert 3 2 0 / 169 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 182 = 0.01648 0.00370 # generation 44: best score out of 20: T0287.try7-al6 224.17519 cost/residue, 238 clashes 0.16571 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 55 = 0.09091 0.00826 ## JiggleSubtree 0 5 3 / 76 = 0.03947 0.00719 ## JiggleSegment 1 12 5 / 76 = 0.06579 0.01026 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 6 39 11 / 77 = 0.14286 0.00814 ## TweakPhiSegment 2 15 4 / 51 = 0.07843 0.00443 ## TweakPsiSubtree 0 51 22 / 79 = 0.27848 0.00653 ## TweakPsiSegment 0 20 9 / 45 = 0.20000 0.00342 ## TweakPsiPhiSubtree 6 29 7 / 46 = 0.15217 0.00519 ## TweakPsiPhiSegment 5 53 15 / 88 = 0.17045 0.00845 ## TweakHbondSubtree 0 69 35 / 162 = 0.21605 0.02032 ## TweakHbondSegment 1 34 17 / 99 = 0.17172 0.00974 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 38 = 0.21053 0.00110 ## OneRotamer 0 62 31 / 183 = 0.16940 0.02299 ## ClashingRotamer 0 2 1 / 51 = 0.01961 0.00218 ## ClusteredRotamer 2 9 4 / 86 = 0.04651 0.00891 ## ReduceBreak 2 9 4 / 194 = 0.02062 0.00289 ## CloseGap 0 20 15 / 379 = 0.03958 0.07006 ## HealGap 0 50 10 / 244 = 0.04098 0.00711 ## MoveGap 0 5 4 / 251 = 0.01594 0.02446 ## ReduceConstraint 1 3 0 / 176 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 793 = 0.00883 0.01118 ## InsertFragment 0 9 5 / 226 = 0.02212 0.01274 ## TwoFragment 0 0 0 / 180 = 0.00000 0.00000 ## CrossOver 7 14 10 / 239 = 0.04184 0.03292 ## CrossAndInsert 3 2 0 / 171 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 190 = 0.01579 0.00354 # generation 45: best score out of 20: T0287.try7-al6 224.10995 cost/residue, 241 clashes 0.16708 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 55 = 0.09091 0.00826 ## JiggleSubtree 0 5 3 / 79 = 0.03797 0.00692 ## JiggleSegment 1 12 5 / 82 = 0.06098 0.00951 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 6 40 11 / 81 = 0.13580 0.00773 ## TweakPhiSegment 2 15 4 / 51 = 0.07843 0.00443 ## TweakPsiSubtree 0 52 22 / 81 = 0.27160 0.00637 ## TweakPsiSegment 0 21 9 / 47 = 0.19149 0.00327 ## TweakPsiPhiSubtree 6 29 7 / 47 = 0.14894 0.00508 ## TweakPsiPhiSegment 5 54 15 / 90 = 0.16667 0.00826 ## TweakHbondSubtree 0 71 36 / 167 = 0.21557 0.01972 ## TweakHbondSegment 1 34 17 / 100 = 0.17000 0.00964 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 39 = 0.20513 0.00107 ## OneRotamer 0 66 32 / 196 = 0.16327 0.02323 ## ClashingRotamer 0 2 1 / 51 = 0.01961 0.00218 ## ClusteredRotamer 2 11 4 / 97 = 0.04124 0.00790 ## ReduceBreak 2 9 4 / 199 = 0.02010 0.00282 ## CloseGap 0 21 15 / 384 = 0.03906 0.06914 ## HealGap 0 50 10 / 248 = 0.04032 0.00700 ## MoveGap 0 5 4 / 254 = 0.01575 0.02417 ## ReduceConstraint 1 3 0 / 178 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 801 = 0.00874 0.01107 ## InsertFragment 0 9 5 / 232 = 0.02155 0.01241 ## TwoFragment 0 0 0 / 183 = 0.00000 0.00000 ## CrossOver 8 14 10 / 242 = 0.04132 0.03251 ## CrossAndInsert 3 2 0 / 172 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 197 = 0.01523 0.00342 # generation 46: best score out of 20: T0287.try7-al6 224.09941 cost/residue, 241 clashes 0.16731 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 55 = 0.09091 0.00826 ## JiggleSubtree 0 5 3 / 79 = 0.03797 0.00692 ## JiggleSegment 1 12 5 / 87 = 0.05747 0.00896 ## OptSubtree 1 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 6 40 11 / 82 = 0.13415 0.00764 ## TweakPhiSegment 2 16 4 / 54 = 0.07407 0.00418 ## TweakPsiSubtree 0 53 23 / 84 = 0.27381 0.00624 ## TweakPsiSegment 0 23 10 / 50 = 0.20000 0.00329 ## TweakPsiPhiSubtree 6 29 7 / 47 = 0.14894 0.00508 ## TweakPsiPhiSegment 6 54 15 / 91 = 0.16484 0.00817 ## TweakHbondSubtree 0 76 36 / 178 = 0.20225 0.01850 ## TweakHbondSegment 1 34 17 / 102 = 0.16667 0.00945 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 39 = 0.20513 0.00107 ## OneRotamer 0 69 33 / 203 = 0.16256 0.02248 ## ClashingRotamer 0 2 1 / 53 = 0.01887 0.00210 ## ClusteredRotamer 2 11 4 / 106 = 0.03774 0.00723 ## ReduceBreak 2 9 4 / 202 = 0.01980 0.00278 ## CloseGap 0 21 15 / 386 = 0.03886 0.06879 ## HealGap 0 50 10 / 251 = 0.03984 0.00691 ## MoveGap 0 5 4 / 261 = 0.01533 0.02352 ## ReduceConstraint 1 3 0 / 179 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 815 = 0.00859 0.01088 ## InsertFragment 0 9 5 / 238 = 0.02101 0.01209 ## TwoFragment 0 0 0 / 188 = 0.00000 0.00000 ## CrossOver 8 14 10 / 242 = 0.04132 0.03251 ## CrossAndInsert 3 2 0 / 176 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 203 = 0.01478 0.00332 # Closing gap before 159 # generation 47: best score out of 20: T0287.try7-al6 223.78180 cost/residue, 233 clashes 0.16708 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 58 = 0.08621 0.00784 ## JiggleSubtree 0 5 3 / 82 = 0.03659 0.00667 ## JiggleSegment 1 14 6 / 90 = 0.06667 0.00899 ## OptSubtree 1 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 6 42 11 / 84 = 0.13095 0.00746 ## TweakPhiSegment 2 16 4 / 55 = 0.07273 0.00411 ## TweakPsiSubtree 1 54 25 / 87 = 0.28736 0.00622 ## TweakPsiSegment 0 23 10 / 51 = 0.19608 0.00322 ## TweakPsiPhiSubtree 6 29 7 / 47 = 0.14894 0.00508 ## TweakPsiPhiSegment 8 56 17 / 94 = 0.18085 0.00825 ## TweakHbondSubtree 0 76 36 / 180 = 0.20000 0.01829 ## TweakHbondSegment 1 34 17 / 105 = 0.16190 0.00918 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 39 = 0.20513 0.00107 ## OneRotamer 0 73 35 / 216 = 0.16204 0.02323 ## ClashingRotamer 0 2 1 / 54 = 0.01852 0.00206 ## ClusteredRotamer 2 11 4 / 113 = 0.03540 0.00678 ## ReduceBreak 2 9 4 / 205 = 0.01951 0.00274 ## CloseGap 0 21 15 / 391 = 0.03836 0.06791 ## HealGap 0 51 11 / 260 = 0.04231 0.00677 ## MoveGap 0 5 4 / 263 = 0.01521 0.02334 ## ReduceConstraint 1 3 0 / 183 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 826 = 0.00847 0.01073 ## InsertFragment 0 9 5 / 240 = 0.02083 0.01199 ## TwoFragment 0 0 0 / 190 = 0.00000 0.00000 ## CrossOver 8 14 10 / 246 = 0.04065 0.03199 ## CrossAndInsert 3 2 0 / 181 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 209 = 0.01435 0.00322 # generation 48: best score out of 20: T0287.try7-al6 223.72609 cost/residue, 232 clashes 0.16708 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 5 / 58 = 0.08621 0.00784 ## JiggleSubtree 0 5 3 / 83 = 0.03614 0.00659 ## JiggleSegment 1 14 6 / 96 = 0.06250 0.00843 ## OptSubtree 1 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 6 44 13 / 90 = 0.14444 0.00860 ## TweakPhiSegment 2 17 4 / 56 = 0.07143 0.00403 ## TweakPsiSubtree 1 55 26 / 90 = 0.28889 0.00655 ## TweakPsiSegment 0 23 10 / 54 = 0.18519 0.00304 ## TweakPsiPhiSubtree 6 29 7 / 47 = 0.14894 0.00508 ## TweakPsiPhiSegment 9 59 18 / 100 = 0.18000 0.00784 ## TweakHbondSubtree 0 79 36 / 185 = 0.19459 0.01780 ## TweakHbondSegment 1 35 18 / 107 = 0.16822 0.00946 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 40 = 0.20000 0.00104 ## OneRotamer 0 77 38 / 232 = 0.16379 0.02233 ## ClashingRotamer 0 2 1 / 55 = 0.01818 0.00202 ## ClusteredRotamer 2 11 4 / 116 = 0.03448 0.00660 ## ReduceBreak 2 9 4 / 207 = 0.01932 0.00271 ## CloseGap 0 21 15 / 396 = 0.03788 0.06705 ## HealGap 0 52 12 / 268 = 0.04478 0.00657 ## MoveGap 0 5 4 / 267 = 0.01498 0.02299 ## ReduceConstraint 1 3 0 / 185 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 838 = 0.00835 0.01058 ## InsertFragment 0 9 5 / 242 = 0.02066 0.01189 ## TwoFragment 0 0 0 / 193 = 0.00000 0.00000 ## CrossOver 8 14 10 / 249 = 0.04016 0.03160 ## CrossAndInsert 3 2 0 / 184 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 211 = 0.01422 0.00319 # generation 49: best score out of 20: T0287.try7-al6 223.64104 cost/residue, 232 clashes 0.16708 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 6 / 61 = 0.09836 0.00756 ## JiggleSubtree 0 5 3 / 86 = 0.03488 0.00636 ## JiggleSegment 1 14 6 / 97 = 0.06186 0.00834 ## OptSubtree 1 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 44 13 / 95 = 0.13684 0.00815 ## TweakPhiSegment 2 18 4 / 58 = 0.06897 0.00390 ## TweakPsiSubtree 1 57 27 / 92 = 0.29348 0.00644 ## TweakPsiSegment 0 23 10 / 55 = 0.18182 0.00299 ## TweakPsiPhiSubtree 6 29 7 / 48 = 0.14583 0.00498 ## TweakPsiPhiSegment 10 61 18 / 104 = 0.17308 0.00754 ## TweakHbondSubtree 0 82 38 / 191 = 0.19895 0.01756 ## TweakHbondSegment 1 35 18 / 111 = 0.16216 0.00912 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 41 = 0.19512 0.00102 ## OneRotamer 0 80 41 / 248 = 0.16532 0.02163 ## ClashingRotamer 0 2 1 / 56 = 0.01786 0.00198 ## ClusteredRotamer 2 11 4 / 123 = 0.03252 0.00623 ## ReduceBreak 2 9 4 / 207 = 0.01932 0.00271 ## CloseGap 0 21 15 / 403 = 0.03722 0.06588 ## HealGap 0 52 12 / 270 = 0.04444 0.00652 ## MoveGap 0 5 4 / 270 = 0.01481 0.02274 ## ReduceConstraint 1 3 0 / 186 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 848 = 0.00825 0.01045 ## InsertFragment 0 9 5 / 242 = 0.02066 0.01189 ## TwoFragment 0 0 0 / 200 = 0.00000 0.00000 ## CrossOver 8 14 10 / 250 = 0.04000 0.03147 ## CrossAndInsert 5 2 0 / 188 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 216 = 0.01389 0.00312 # generation 50: best score out of 20: T0287.try7-al6 223.60265 cost/residue, 231 clashes 0.16666 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 7 / 64 = 0.10938 0.00730 ## JiggleSubtree 0 5 3 / 87 = 0.03448 0.00628 ## JiggleSegment 1 15 7 / 100 = 0.07000 0.00998 ## OptSubtree 1 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 46 13 / 100 = 0.13000 0.00774 ## TweakPhiSegment 2 19 4 / 59 = 0.06780 0.00383 ## TweakPsiSubtree 1 57 28 / 98 = 0.28571 0.00606 ## TweakPsiSegment 0 25 11 / 59 = 0.18644 0.00279 ## TweakPsiPhiSubtree 6 29 7 / 48 = 0.14583 0.00498 ## TweakPsiPhiSegment 10 61 19 / 106 = 0.17925 0.00744 ## TweakHbondSubtree 0 84 39 / 202 = 0.19307 0.01676 ## TweakHbondSegment 1 36 19 / 116 = 0.16379 0.00878 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 41 = 0.19512 0.00102 ## OneRotamer 0 84 42 / 260 = 0.16154 0.02119 ## ClashingRotamer 0 2 1 / 57 = 0.01754 0.00195 ## ClusteredRotamer 2 11 4 / 129 = 0.03101 0.00594 ## ReduceBreak 2 9 4 / 211 = 0.01896 0.00266 ## CloseGap 0 21 15 / 407 = 0.03686 0.06524 ## HealGap 0 52 12 / 276 = 0.04348 0.00638 ## MoveGap 0 5 4 / 271 = 0.01476 0.02265 ## ReduceConstraint 1 3 0 / 188 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 857 = 0.00817 0.01035 ## InsertFragment 0 9 5 / 246 = 0.02033 0.01170 ## TwoFragment 0 0 0 / 205 = 0.00000 0.00000 ## CrossOver 8 14 10 / 251 = 0.03984 0.03135 ## CrossAndInsert 5 2 0 / 189 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 218 = 0.01376 0.00309 # generation 51: best score out of 20: T0287.try7-al6 223.50371 cost/residue, 228 clashes 0.16671 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 7 / 67 = 0.10448 0.00697 ## JiggleSubtree 0 5 3 / 88 = 0.03409 0.00621 ## JiggleSegment 1 15 7 / 108 = 0.06481 0.00924 ## OptSubtree 1 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 47 13 / 102 = 0.12745 0.00759 ## TweakPhiSegment 2 22 4 / 62 = 0.06452 0.00364 ## TweakPsiSubtree 1 57 28 / 98 = 0.28571 0.00606 ## TweakPsiSegment 0 27 12 / 61 = 0.19672 0.00271 ## TweakPsiPhiSubtree 6 29 7 / 48 = 0.14583 0.00498 ## TweakPsiPhiSegment 10 61 19 / 106 = 0.17925 0.00744 ## TweakHbondSubtree 0 86 40 / 210 = 0.19048 0.01710 ## TweakHbondSegment 1 36 19 / 116 = 0.16379 0.00878 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 43 = 0.18605 0.00097 ## OneRotamer 0 85 43 / 268 = 0.16045 0.02082 ## ClashingRotamer 0 2 1 / 58 = 0.01724 0.00191 ## ClusteredRotamer 2 11 4 / 134 = 0.02985 0.00572 ## ReduceBreak 2 9 4 / 212 = 0.01887 0.00265 ## CloseGap 0 21 15 / 407 = 0.03686 0.06524 ## HealGap 0 54 13 / 283 = 0.04594 0.00623 ## MoveGap 0 5 4 / 278 = 0.01439 0.02208 ## ReduceConstraint 1 3 0 / 191 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 870 = 0.00805 0.01019 ## InsertFragment 0 9 5 / 248 = 0.02016 0.01161 ## TwoFragment 0 0 0 / 209 = 0.00000 0.00000 ## CrossOver 8 14 10 / 257 = 0.03891 0.03062 ## CrossAndInsert 5 2 0 / 193 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 225 = 0.01333 0.00299 # generation 52: best score out of 20: T0287.try7-al6 223.34373 cost/residue, 233 clashes 0.16719 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 7 / 67 = 0.10448 0.00697 ## JiggleSubtree 0 5 3 / 88 = 0.03409 0.00621 ## JiggleSegment 1 15 7 / 115 = 0.06087 0.00868 ## OptSubtree 1 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 6 48 14 / 104 = 0.13462 0.00775 ## TweakPhiSegment 2 22 4 / 62 = 0.06452 0.00364 ## TweakPsiSubtree 1 60 29 / 101 = 0.28713 0.00882 ## TweakPsiSegment 0 29 13 / 63 = 0.20635 0.00264 ## TweakPsiPhiSubtree 6 29 7 / 48 = 0.14583 0.00498 ## TweakPsiPhiSegment 11 63 20 / 111 = 0.18018 0.00715 ## TweakHbondSubtree 0 90 42 / 220 = 0.19091 0.01688 ## TweakHbondSegment 1 37 19 / 118 = 0.16102 0.00863 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 43 = 0.18605 0.00097 ## OneRotamer 0 87 44 / 284 = 0.15493 0.02007 ## ClashingRotamer 0 2 1 / 60 = 0.01667 0.00185 ## ClusteredRotamer 2 11 4 / 140 = 0.02857 0.00547 ## ReduceBreak 2 9 4 / 216 = 0.01852 0.00260 ## CloseGap 0 21 15 / 411 = 0.03650 0.06460 ## HealGap 0 54 13 / 291 = 0.04467 0.00605 ## MoveGap 0 5 4 / 283 = 0.01413 0.02169 ## ReduceConstraint 1 3 0 / 192 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 874 = 0.00801 0.01014 ## InsertFragment 0 9 5 / 250 = 0.02000 0.01151 ## TwoFragment 0 0 0 / 213 = 0.00000 0.00000 ## CrossOver 8 14 10 / 260 = 0.03846 0.03026 ## CrossAndInsert 5 2 0 / 196 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 229 = 0.01310 0.00294 # generation 53: best score out of 20: T0287.try7-al6 223.20329 cost/residue, 229 clashes 0.16902 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 7 / 69 = 0.10145 0.00677 ## JiggleSubtree 0 5 3 / 90 = 0.03333 0.00608 ## JiggleSegment 1 15 7 / 121 = 0.05785 0.00825 ## OptSubtree 1 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 6 54 16 / 113 = 0.14159 0.00837 ## TweakPhiSegment 2 22 4 / 63 = 0.06349 0.00359 ## TweakPsiSubtree 1 61 30 / 105 = 0.28571 0.00983 ## TweakPsiSegment 0 29 13 / 63 = 0.20635 0.00264 ## TweakPsiPhiSubtree 6 30 7 / 50 = 0.14000 0.00478 ## TweakPsiPhiSegment 11 64 20 / 116 = 0.17241 0.00684 ## TweakHbondSubtree 0 93 44 / 227 = 0.19383 0.01726 ## TweakHbondSegment 1 38 19 / 120 = 0.15833 0.00849 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 43 = 0.18605 0.00097 ## OneRotamer 0 89 46 / 293 = 0.15700 0.01981 ## ClashingRotamer 0 2 1 / 61 = 0.01639 0.00182 ## ClusteredRotamer 2 11 4 / 145 = 0.02759 0.00528 ## ReduceBreak 2 9 4 / 220 = 0.01818 0.00255 ## CloseGap 0 22 15 / 416 = 0.03606 0.06383 ## HealGap 0 55 13 / 294 = 0.04422 0.00599 ## MoveGap 0 5 4 / 283 = 0.01413 0.02169 ## ReduceConstraint 1 3 0 / 193 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 891 = 0.00786 0.00995 ## InsertFragment 0 9 5 / 252 = 0.01984 0.01142 ## TwoFragment 0 0 0 / 215 = 0.00000 0.00000 ## CrossOver 9 14 10 / 263 = 0.03802 0.02992 ## CrossAndInsert 5 2 0 / 199 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 232 = 0.01293 0.00290 # generation 54: best score out of 20: T0287.try7-al6 223.18475 cost/residue, 232 clashes 0.16637 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 7 / 69 = 0.10145 0.00677 ## JiggleSubtree 0 5 3 / 91 = 0.03297 0.00601 ## JiggleSegment 1 16 8 / 124 = 0.06452 0.00807 ## OptSubtree 1 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 6 56 17 / 120 = 0.14167 0.00798 ## TweakPhiSegment 2 23 5 / 64 = 0.07812 0.00442 ## TweakPsiSubtree 1 65 32 / 109 = 0.29358 0.01128 ## TweakPsiSegment 0 30 14 / 65 = 0.21538 0.00268 ## TweakPsiPhiSubtree 6 30 7 / 50 = 0.14000 0.00478 ## TweakPsiPhiSegment 11 65 20 / 117 = 0.17094 0.00678 ## TweakHbondSubtree 0 97 47 / 237 = 0.19831 0.01730 ## TweakHbondSegment 1 38 19 / 122 = 0.15574 0.00835 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 43 = 0.18605 0.00097 ## OneRotamer 0 90 47 / 303 = 0.15512 0.01920 ## ClashingRotamer 0 2 1 / 61 = 0.01639 0.00182 ## ClusteredRotamer 2 11 4 / 149 = 0.02685 0.00514 ## ReduceBreak 2 9 4 / 224 = 0.01786 0.00250 ## CloseGap 0 22 15 / 419 = 0.03580 0.06337 ## HealGap 0 55 13 / 298 = 0.04362 0.00591 ## MoveGap 0 5 4 / 286 = 0.01399 0.02147 ## ReduceConstraint 1 3 0 / 195 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 906 = 0.00773 0.00979 ## InsertFragment 0 9 5 / 253 = 0.01976 0.01138 ## TwoFragment 0 0 0 / 221 = 0.00000 0.00000 ## CrossOver 9 14 10 / 270 = 0.03704 0.02914 ## CrossAndInsert 5 2 0 / 203 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 235 = 0.01277 0.00286 # Closing gap before 151 without wiggling. # generation 55: best score out of 20: T0287.try7-al6 223.13777 cost/residue, 232 clashes 0.16483 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 7 / 69 = 0.10145 0.00677 ## JiggleSubtree 0 5 3 / 91 = 0.03297 0.00601 ## JiggleSegment 1 16 8 / 131 = 0.06107 0.00764 ## OptSubtree 1 0 0 / 37 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 6 61 17 / 126 = 0.13492 0.00760 ## TweakPhiSegment 2 24 5 / 65 = 0.07692 0.00435 ## TweakPsiSubtree 1 71 38 / 131 = 0.29008 0.00946 ## TweakPsiSegment 0 30 14 / 65 = 0.21538 0.00268 ## TweakPsiPhiSubtree 6 30 8 / 51 = 0.15686 0.00484 ## TweakPsiPhiSegment 12 65 20 / 119 = 0.16807 0.00667 ## TweakHbondSubtree 0 99 49 / 245 = 0.20000 0.01696 ## TweakHbondSegment 1 38 19 / 122 = 0.15574 0.00835 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 44 = 0.18182 0.00095 ## OneRotamer 0 90 47 / 306 = 0.15359 0.01902 ## ClashingRotamer 0 2 1 / 62 = 0.01613 0.00179 ## ClusteredRotamer 2 11 4 / 153 = 0.02614 0.00501 ## ReduceBreak 2 9 4 / 227 = 0.01762 0.00247 ## CloseGap 0 22 15 / 423 = 0.03546 0.06277 ## HealGap 0 55 13 / 300 = 0.04333 0.00587 ## MoveGap 0 5 4 / 286 = 0.01399 0.02147 ## ReduceConstraint 1 3 0 / 196 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 919 = 0.00762 0.00965 ## InsertFragment 0 9 5 / 260 = 0.01923 0.01107 ## TwoFragment 0 0 0 / 223 = 0.00000 0.00000 ## CrossOver 9 14 10 / 272 = 0.03676 0.02893 ## CrossAndInsert 5 2 0 / 208 = 0.00000 0.00000 ## ReduceClash 0 3 4 / 238 = 0.01681 0.00289 # generation 56: best score out of 20: T0287.try7-al6 222.95264 cost/residue, 226 clashes 0.16909 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 7 / 70 = 0.10000 0.00667 ## JiggleSubtree 0 5 3 / 91 = 0.03297 0.00601 ## JiggleSegment 1 16 8 / 135 = 0.05926 0.00741 ## OptSubtree 1 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 7 64 19 / 132 = 0.14394 0.00828 ## TweakPhiSegment 2 27 6 / 72 = 0.08333 0.00436 ## TweakPsiSubtree 1 76 43 / 145 = 0.29655 0.00857 ## TweakPsiSegment 0 31 14 / 69 = 0.20290 0.00252 ## TweakPsiPhiSubtree 6 30 8 / 51 = 0.15686 0.00484 ## TweakPsiPhiSegment 12 65 20 / 123 = 0.16260 0.00645 ## TweakHbondSubtree 0 100 49 / 248 = 0.19758 0.01676 ## TweakHbondSegment 1 38 19 / 126 = 0.15079 0.00808 ## TweakMultimer 35 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 20 8 / 44 = 0.18182 0.00095 ## OneRotamer 0 91 49 / 317 = 0.15457 0.01911 ## ClashingRotamer 0 2 1 / 63 = 0.01587 0.00176 ## ClusteredRotamer 2 11 4 / 157 = 0.02548 0.00488 ## ReduceBreak 2 9 4 / 229 = 0.01747 0.00245 ## CloseGap 0 22 15 / 423 = 0.03546 0.06277 ## HealGap 0 55 13 / 305 = 0.04262 0.00578 ## MoveGap 0 5 4 / 287 = 0.01394 0.02139 ## ReduceConstraint 1 3 0 / 197 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 928 = 0.00754 0.00955 ## InsertFragment 0 9 5 / 262 = 0.01908 0.01099 ## TwoFragment 0 0 0 / 227 = 0.00000 0.00000 ## CrossOver 9 14 10 / 277 = 0.03610 0.02841 ## CrossAndInsert 5 2 0 / 211 = 0.00000 0.00000 ## ReduceClash 0 3 4 / 241 = 0.01660 0.00285 # generation 57: best score out of 20: T0287.try7-al6 222.90051 cost/residue, 232 clashes 0.16483 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 7 / 72 = 0.09722 0.00649 ## JiggleSubtree 0 5 3 / 92 = 0.03261 0.00594 ## JiggleSegment 1 16 8 / 140 = 0.05714 0.00715 ## OptSubtree 1 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 7 69 19 / 143 = 0.13287 0.00764 ## TweakPhiSegment 2 28 6 / 77 = 0.07792 0.00408 ## TweakPsiSubtree 1 77 43 / 153 = 0.28105 0.00812 ## TweakPsiSegment 0 31 14 / 69 = 0.20290 0.00252 ## TweakPsiPhiSubtree 6 30 8 / 55 = 0.14545 0.00448 ## TweakPsiPhiSegment 12 65 20 / 124 = 0.16129 0.00640 ## TweakHbondSubtree 0 101 49 / 255 = 0.19216 0.01630 ## TweakHbondSegment 1 38 19 / 127 = 0.14961 0.00802 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 21 9 / 45 = 0.20000 0.00113 ## OneRotamer 0 95 52 / 329 = 0.15805 0.01982 ## ClashingRotamer 0 2 1 / 63 = 0.01587 0.00176 ## ClusteredRotamer 2 11 4 / 157 = 0.02548 0.00488 ## ReduceBreak 2 9 4 / 235 = 0.01702 0.00239 ## CloseGap 0 22 15 / 428 = 0.03505 0.06204 ## HealGap 0 55 13 / 306 = 0.04248 0.00576 ## MoveGap 0 5 4 / 289 = 0.01384 0.02124 ## ReduceConstraint 1 3 0 / 198 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 933 = 0.00750 0.00950 ## InsertFragment 0 9 5 / 269 = 0.01859 0.01070 ## TwoFragment 0 0 0 / 231 = 0.00000 0.00000 ## CrossOver 9 14 10 / 279 = 0.03584 0.02820 ## CrossAndInsert 5 2 0 / 215 = 0.00000 0.00000 ## ReduceClash 0 3 4 / 243 = 0.01646 0.00283 # generation 58: best score out of 20: T0287.try7-al6 222.75023 cost/residue, 224 clashes 0.16973 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 8 / 73 = 0.10959 0.00652 ## JiggleSubtree 0 5 3 / 93 = 0.03226 0.00588 ## JiggleSegment 1 16 8 / 143 = 0.05594 0.00700 ## OptSubtree 1 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 7 71 19 / 148 = 0.12838 0.00738 ## TweakPhiSegment 2 29 7 / 80 = 0.08750 0.00398 ## TweakPsiSubtree 1 77 43 / 158 = 0.27215 0.00787 ## TweakPsiSegment 0 31 14 / 70 = 0.20000 0.00249 ## TweakPsiPhiSubtree 6 30 8 / 55 = 0.14545 0.00448 ## TweakPsiPhiSegment 12 66 20 / 126 = 0.15873 0.00630 ## TweakHbondSubtree 0 108 54 / 272 = 0.19853 0.01626 ## TweakHbondSegment 1 38 19 / 134 = 0.14179 0.00760 ## TweakMultimer 40 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 21 9 / 45 = 0.20000 0.00113 ## OneRotamer 0 97 54 / 344 = 0.15698 0.01988 ## ClashingRotamer 0 2 1 / 64 = 0.01562 0.00174 ## ClusteredRotamer 2 11 4 / 159 = 0.02516 0.00482 ## ReduceBreak 2 9 4 / 236 = 0.01695 0.00238 ## CloseGap 0 22 15 / 431 = 0.03480 0.06160 ## HealGap 0 55 13 / 310 = 0.04194 0.00568 ## MoveGap 0 5 4 / 291 = 0.01375 0.02110 ## ReduceConstraint 1 3 0 / 203 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 943 = 0.00742 0.00940 ## InsertFragment 0 9 5 / 271 = 0.01845 0.01062 ## TwoFragment 0 0 0 / 233 = 0.00000 0.00000 ## CrossOver 9 14 10 / 284 = 0.03521 0.02771 ## CrossAndInsert 5 2 0 / 215 = 0.00000 0.00000 ## ReduceClash 0 3 4 / 246 = 0.01626 0.00280 # generation 59: best score out of 20: T0287.try7-al6 222.74687 cost/residue, 224 clashes 0.16978 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 8 / 74 = 0.10811 0.00643 ## JiggleSubtree 0 5 3 / 95 = 0.03158 0.00576 ## JiggleSegment 1 16 8 / 145 = 0.05517 0.00690 ## OptSubtree 1 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 7 72 19 / 151 = 0.12583 0.00724 ## TweakPhiSegment 2 30 7 / 83 = 0.08434 0.00383 ## TweakPsiSubtree 2 79 45 / 167 = 0.26946 0.00747 ## TweakPsiSegment 1 33 16 / 72 = 0.22222 0.00270 ## TweakPsiPhiSubtree 6 30 8 / 55 = 0.14545 0.00448 ## TweakPsiPhiSegment 12 66 20 / 128 = 0.15625 0.00620 ## TweakHbondSubtree 0 112 55 / 285 = 0.19298 0.01569 ## TweakHbondSegment 1 40 19 / 137 = 0.13869 0.00743 ## TweakMultimer 40 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 22 10 / 46 = 0.21739 0.00129 ## OneRotamer 0 99 55 / 357 = 0.15406 0.01924 ## ClashingRotamer 0 2 1 / 65 = 0.01538 0.00171 ## ClusteredRotamer 2 11 4 / 162 = 0.02469 0.00473 ## ReduceBreak 2 10 4 / 241 = 0.01660 0.00233 ## CloseGap 0 22 15 / 437 = 0.03432 0.06076 ## HealGap 0 55 13 / 311 = 0.04180 0.00567 ## MoveGap 0 5 4 / 292 = 0.01370 0.02102 ## ReduceConstraint 1 3 0 / 204 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 953 = 0.00735 0.00930 ## InsertFragment 0 9 5 / 274 = 0.01825 0.01050 ## TwoFragment 0 0 0 / 234 = 0.00000 0.00000 ## CrossOver 9 14 10 / 288 = 0.03472 0.02732 ## CrossAndInsert 5 2 0 / 220 = 0.00000 0.00000 ## ReduceClash 0 3 4 / 250 = 0.01600 0.00275 # generation 60: best score out of 20: T0287.try7-al6 222.48695 cost/residue, 218 clashes 0.16973 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 29 10 / 81 = 0.12346 0.00606 ## JiggleSubtree 0 5 3 / 95 = 0.03158 0.00576 ## JiggleSegment 1 16 8 / 148 = 0.05405 0.00676 ## OptSubtree 1 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 7 73 20 / 156 = 0.12821 0.00749 ## TweakPhiSegment 2 33 7 / 87 = 0.08046 0.00366 ## TweakPsiSubtree 2 82 47 / 174 = 0.27011 0.00719 ## TweakPsiSegment 1 35 17 / 76 = 0.22368 0.00258 ## TweakPsiPhiSubtree 7 30 8 / 57 = 0.14035 0.00433 ## TweakPsiPhiSegment 12 66 20 / 129 = 0.15504 0.00615 ## TweakHbondSubtree 0 114 56 / 295 = 0.18983 0.01518 ## TweakHbondSegment 1 40 19 / 137 = 0.13869 0.00743 ## TweakMultimer 42 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 23 11 / 50 = 0.22000 0.00119 ## OneRotamer 0 100 56 / 373 = 0.15013 0.01913 ## ClashingRotamer 0 2 1 / 65 = 0.01538 0.00171 ## ClusteredRotamer 2 11 4 / 163 = 0.02454 0.00470 ## ReduceBreak 2 10 4 / 246 = 0.01626 0.00228 ## CloseGap 0 22 15 / 438 = 0.03425 0.06062 ## HealGap 0 55 13 / 317 = 0.04101 0.00556 ## MoveGap 0 5 4 / 293 = 0.01365 0.02095 ## ReduceConstraint 1 3 0 / 208 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 7 / 960 = 0.00729 0.00924 ## InsertFragment 0 9 5 / 276 = 0.01812 0.01043 ## TwoFragment 0 0 0 / 237 = 0.00000 0.00000 ## CrossOver 9 14 10 / 289 = 0.03460 0.02723 ## CrossAndInsert 5 2 0 / 223 = 0.00000 0.00000 ## ReduceClash 0 3 4 / 250 = 0.01600 0.00275 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_390137682.pdb -s /var/tmp/to_scwrl_390137682.seq -o /var/tmp/from_scwrl_390137682.pdb > /var/tmp/scwrl_390137682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390137682.pdb # T0287.try7-al6-scwrl 228.25104 cost/residue 275 clashes 0.16974 breaks # filling super_pool to have at least 20 conformations # best score in super_pool out of 20: T0287.try7-al8 at pool[6] 221.83205 cost/residue, 189 clashes 0.16007 breaks # optimizing backbone with 20 conformations in pool # doing 100 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # Closing gap before 41 next to short segment # generation 1: best score out of 20: T0287.try7-al8 221.83205 cost/residue, 189 clashes 0.16007 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 0 0 / 0 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 9 = 0.00000 0.00000 ## CloseGap 0 0 0 / 9 = 0.00000 0.00000 ## HealGap 0 6 0 / 12 = 0.00000 0.00000 ## MoveGap 0 0 0 / 8 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 5 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 0 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 24 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 4 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 8 = 0.00000 0.00000 ## CrossOver 1 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 3 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 3 = 0.00000 0.00000 # Closing gap before 43 next to short segment # Closing gap before 41 next to short segment # Closing gap before 41 next to short segment # generation 2: best score out of 20: T0287.try7-al8 221.83205 cost/residue, 189 clashes 0.16007 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 18 = 0.00000 0.00000 ## CloseGap 0 3 0 / 20 = 0.00000 0.00000 ## HealGap 0 11 0 / 19 = 0.00000 0.00000 ## MoveGap 0 0 0 / 18 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 8 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 0 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 44 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 11 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 15 = 0.00000 0.00000 ## CrossOver 1 1 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 7 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 9 = 0.00000 0.00000 # Closing gap before 41 next to short segment # generation 3: best score out of 20: T0287.try7-al8 221.75171 cost/residue, 188 clashes 0.15986 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.04017 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 1 / 2 = 0.50000 0.01698 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 2 = 0.50000 0.00990 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 2 = 0.50000 0.00359 ## OneRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 6 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 24 = 0.00000 0.00000 ## CloseGap 0 3 0 / 28 = 0.00000 0.00000 ## HealGap 0 14 0 / 23 = 0.00000 0.00000 ## MoveGap 0 0 0 / 24 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 13 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 69 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 14 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 25 = 0.00000 0.00000 ## CrossOver 1 1 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 15 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 13 = 0.00000 0.00000 # generation 4: best score out of 20: T0287.try7-al8 221.75171 cost/residue, 188 clashes 0.15986 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 5 / 10 = 0.50000 0.01465 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 5 1 / 7 = 0.14286 0.00485 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 3 2 / 7 = 0.28571 0.00575 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 3 = 0.33333 0.00240 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 34 = 0.02941 0.00030 ## CloseGap 0 3 0 / 30 = 0.00000 0.00000 ## HealGap 0 14 0 / 27 = 0.00000 0.00000 ## MoveGap 0 0 0 / 25 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 17 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 90 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 18 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 33 = 0.00000 0.00000 ## CrossOver 1 1 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 23 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 21 = 0.00000 0.00000 # Closing gap before 190 without wiggling. # generation 5: best score out of 20: T0287.try7-al8 221.74875 cost/residue, 189 clashes 0.15978 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 6 / 17 = 0.35294 0.00911 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.00007 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 6 2 / 8 = 0.25000 0.00474 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 3 2 / 8 = 0.25000 0.00503 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 4 = 0.25000 0.00180 ## OneRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 39 = 0.02564 0.00026 ## CloseGap 0 4 1 / 36 = 0.02778 0.01626 ## HealGap 0 16 0 / 33 = 0.00000 0.00000 ## MoveGap 0 0 0 / 32 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 22 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 115 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 26 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 38 = 0.00000 0.00000 ## CrossOver 1 1 0 / 11 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 27 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 29 = 0.00000 0.00000 # Closing gap before 149 # generation 6: best score out of 20: T0287.try7-al8 221.71877 cost/residue, 187 clashes 0.15996 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 8 / 22 = 0.36364 0.00980 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.00007 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 9 4 / 11 = 0.36364 0.00762 ## TweakHbondSubtree 0 2 1 / 3 = 0.33333 0.03275 ## TweakHbondSegment 0 4 2 / 10 = 0.20000 0.00403 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 4 = 0.25000 0.00180 ## OneRotamer 0 2 0 / 4 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 14 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 47 = 0.02128 0.00022 ## CloseGap 0 4 1 / 46 = 0.02174 0.01273 ## HealGap 0 18 0 / 39 = 0.00000 0.00000 ## MoveGap 0 0 0 / 34 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 30 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 143 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 30 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 43 = 0.00000 0.00000 ## CrossOver 1 1 0 / 14 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 31 = 0.00000 0.00000 # Closing gap before 104 without wiggling. # generation 7: best score out of 20: T0287.try7-al8 221.61400 cost/residue, 188 clashes 0.15924 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 8 / 24 = 0.33333 0.00898 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.00007 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 11 4 / 13 = 0.30769 0.00645 ## TweakHbondSubtree 0 4 2 / 11 = 0.18182 0.02014 ## TweakHbondSegment 0 5 3 / 11 = 0.27273 0.00449 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 4 = 0.25000 0.00180 ## OneRotamer 0 3 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 17 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 55 = 0.01818 0.00018 ## CloseGap 0 4 1 / 56 = 0.01786 0.01046 ## HealGap 0 22 2 / 47 = 0.04255 0.00026 ## MoveGap 0 0 0 / 40 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 35 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 167 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 31 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 47 = 0.00000 0.00000 ## CrossOver 1 1 0 / 14 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 37 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 37 = 0.00000 0.00000 # Closing gap before 149 without wiggling. # generation 8: best score out of 20: T0287.try7-al8 221.56361 cost/residue, 187 clashes 0.16206 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 8 / 27 = 0.29630 0.00798 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.00007 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 12 4 / 14 = 0.28571 0.00599 ## TweakHbondSubtree 0 7 3 / 19 = 0.15789 0.01431 ## TweakHbondSegment 0 6 4 / 12 = 0.33333 0.00471 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 6 = 0.33333 0.00129 ## OneRotamer 0 3 0 / 6 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 19 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 59 = 0.01695 0.00017 ## CloseGap 0 4 1 / 69 = 0.01449 0.00849 ## HealGap 0 24 3 / 54 = 0.05556 0.00034 ## MoveGap 0 0 0 / 50 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 38 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 185 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 35 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 48 = 0.00000 0.00000 ## CrossOver 2 1 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 45 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 40 = 0.00000 0.00000 # Closing gap before 184 next to short segment # generation 9: best score out of 20: T0287.try7-al8 221.53545 cost/residue, 187 clashes 0.16206 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 11 / 34 = 0.32353 0.00844 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.00007 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 15 5 / 18 = 0.27778 0.00477 ## TweakHbondSubtree 0 7 3 / 25 = 0.12000 0.01088 ## TweakHbondSegment 0 7 4 / 16 = 0.25000 0.00353 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 2 / 6 = 0.33333 0.00129 ## OneRotamer 0 3 0 / 7 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 20 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 65 = 0.01538 0.00016 ## CloseGap 0 5 2 / 76 = 0.02632 0.00787 ## HealGap 0 25 3 / 58 = 0.05172 0.00032 ## MoveGap 0 0 0 / 52 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 43 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 204 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 42 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 50 = 0.00000 0.00000 ## CrossOver 2 1 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 49 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 47 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 10: best score out of 20: T0287.try7-al8 221.46692 cost/residue, 188 clashes 0.16196 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 12 / 39 = 0.30769 0.00741 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 4 = 0.25000 0.00005 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 19 5 / 24 = 0.20833 0.00358 ## TweakHbondSubtree 0 8 3 / 30 = 0.10000 0.00906 ## TweakHbondSegment 0 11 5 / 22 = 0.22727 0.00568 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 3 / 8 = 0.37500 0.00105 ## OneRotamer 0 3 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 23 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 69 = 0.01449 0.00015 ## CloseGap 0 5 2 / 82 = 0.02439 0.00729 ## HealGap 0 25 3 / 63 = 0.04762 0.00029 ## MoveGap 0 0 0 / 55 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 51 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 224 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 46 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 58 = 0.00000 0.00000 ## CrossOver 2 1 0 / 27 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 51 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 49 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 182 next to short segment # Closing gap before 99 next to short segment # generation 11: best score out of 20: T0287.try7-al8 221.45383 cost/residue, 188 clashes 0.16136 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 33 16 / 47 = 0.34043 0.00759 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 1 1 / 9 = 0.11111 0.00145 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 4 = 0.25000 0.00005 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 1 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 19 5 / 26 = 0.19231 0.00330 ## TweakHbondSubtree 0 9 3 / 34 = 0.08824 0.00800 ## TweakHbondSegment 0 11 5 / 22 = 0.22727 0.00568 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 4 / 10 = 0.40000 0.00210 ## OneRotamer 0 3 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 23 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 74 = 0.01351 0.00014 ## CloseGap 0 6 3 / 93 = 0.03226 0.00724 ## HealGap 0 26 4 / 65 = 0.06154 0.00055 ## MoveGap 0 0 0 / 59 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 56 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 244 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 49 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 71 = 0.00000 0.00000 ## CrossOver 2 1 0 / 31 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 54 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 52 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 118 without wiggling. # Closing gap before 36 next to short segment # Closing gap before 97 next to short segment # generation 12: best score out of 20: T0287.try7-al8 221.42581 cost/residue, 180 clashes 0.16185 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 16 / 53 = 0.30189 0.00673 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 1 1 / 12 = 0.08333 0.00109 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 4 = 0.25000 0.00005 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 1 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 21 5 / 28 = 0.17857 0.00307 ## TweakHbondSubtree 0 11 4 / 41 = 0.09756 0.00732 ## TweakHbondSegment 0 12 5 / 25 = 0.20000 0.00500 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 4 / 11 = 0.36364 0.00190 ## OneRotamer 0 3 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 24 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 79 = 0.01266 0.00013 ## CloseGap 0 6 3 / 103 = 0.02913 0.00654 ## HealGap 0 26 4 / 67 = 0.05970 0.00053 ## MoveGap 0 0 0 / 66 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 65 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 258 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 54 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 74 = 0.00000 0.00000 ## CrossOver 2 1 0 / 37 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 59 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 57 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 149 # Closing gap before 149 without wiggling. # Closing gap before 36 next to short segment # generation 13: best score out of 20: T0287.try7-al8 221.39229 cost/residue, 193 clashes 0.16014 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 16 / 56 = 0.28571 0.00637 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 1 1 / 13 = 0.07692 0.00101 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 4 = 0.25000 0.00005 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 24 6 / 31 = 0.19355 0.00298 ## TweakHbondSubtree 0 12 5 / 45 = 0.11111 0.00705 ## TweakHbondSegment 0 15 6 / 32 = 0.18750 0.00656 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 4 / 14 = 0.28571 0.00150 ## OneRotamer 0 3 0 / 11 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 24 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 84 = 0.01190 0.00012 ## CloseGap 0 6 3 / 116 = 0.02586 0.00581 ## HealGap 0 26 4 / 75 = 0.05333 0.00048 ## MoveGap 0 0 0 / 72 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 69 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 279 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 77 = 0.00000 0.00000 ## CrossOver 2 1 0 / 39 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 62 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 59 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 149 without wiggling. # Closing gap before 149 without wiggling. # generation 14: best score out of 20: T0287.try7-al8 221.37263 cost/residue, 193 clashes 0.16006 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 43 17 / 61 = 0.27869 0.00617 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 1 1 / 18 = 0.05556 0.00073 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 5 = 0.20000 0.00004 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 25 7 / 33 = 0.21212 0.00505 ## TweakHbondSubtree 0 14 5 / 53 = 0.09434 0.00598 ## TweakHbondSegment 0 18 6 / 37 = 0.16216 0.00567 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 4 / 14 = 0.28571 0.00150 ## OneRotamer 0 3 0 / 11 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 27 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 90 = 0.01111 0.00011 ## CloseGap 0 6 3 / 125 = 0.02400 0.00539 ## HealGap 0 27 4 / 78 = 0.05128 0.00046 ## MoveGap 0 0 0 / 78 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 72 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 296 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 64 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 85 = 0.00000 0.00000 ## CrossOver 2 1 0 / 42 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 65 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 64 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 15: best score out of 20: T0287.try7-al8 221.37100 cost/residue, 180 clashes 0.16377 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 19 / 68 = 0.27941 0.00667 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 1 1 / 19 = 0.05263 0.00069 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 5 = 0.20000 0.00004 ## TweakPsiSegment 0 3 1 / 3 = 0.33333 0.00052 ## TweakPsiPhiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 27 8 / 36 = 0.22222 0.00534 ## TweakHbondSubtree 0 15 5 / 58 = 0.08621 0.00547 ## TweakHbondSegment 0 19 7 / 39 = 0.17949 0.00545 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 14 6 / 16 = 0.37500 0.00144 ## OneRotamer 0 3 0 / 11 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 28 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 94 = 0.01064 0.00011 ## CloseGap 0 6 3 / 133 = 0.02256 0.00507 ## HealGap 0 27 4 / 83 = 0.04819 0.00043 ## MoveGap 0 0 0 / 84 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 77 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 314 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 69 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 89 = 0.00000 0.00000 ## CrossOver 2 2 0 / 51 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 70 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 71 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 33 next to short segment # generation 16: best score out of 20: T0287.try7-al8 221.36554 cost/residue, 180 clashes 0.16353 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 52 20 / 74 = 0.27027 0.00613 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 1 1 / 24 = 0.04167 0.00055 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 5 = 0.20000 0.00004 ## TweakPsiSegment 0 5 1 / 6 = 0.16667 0.00026 ## TweakPsiPhiSubtree 1 3 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 28 8 / 37 = 0.21622 0.00520 ## TweakHbondSubtree 0 15 5 / 62 = 0.08065 0.00511 ## TweakHbondSegment 0 21 8 / 47 = 0.17021 0.00466 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 14 6 / 16 = 0.37500 0.00144 ## OneRotamer 0 3 0 / 11 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 29 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 98 = 0.01020 0.00010 ## CloseGap 0 7 4 / 140 = 0.02857 0.00485 ## HealGap 0 27 4 / 89 = 0.04494 0.00040 ## MoveGap 0 0 0 / 88 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 84 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 334 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 72 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 94 = 0.00000 0.00000 ## CrossOver 2 2 0 / 55 = 0.00000 0.00000 ## CrossAndInsert 3 0 0 / 72 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 74 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 17: best score out of 20: T0287.try7-al8 221.24138 cost/residue, 179 clashes 0.16441 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 57 22 / 85 = 0.25882 0.00546 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 1 1 / 25 = 0.04000 0.00052 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 5 = 0.20000 0.00004 ## TweakPsiSegment 0 5 1 / 6 = 0.16667 0.00026 ## TweakPsiPhiSubtree 1 3 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 30 9 / 45 = 0.20000 0.00777 ## TweakHbondSubtree 0 15 5 / 62 = 0.08065 0.00511 ## TweakHbondSegment 0 22 8 / 51 = 0.15686 0.00429 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 15 6 / 18 = 0.33333 0.00128 ## OneRotamer 0 3 0 / 12 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 30 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 103 = 0.00971 0.00010 ## CloseGap 0 7 4 / 150 = 0.02667 0.00453 ## HealGap 0 29 5 / 93 = 0.05376 0.00039 ## MoveGap 0 0 0 / 91 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 86 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 355 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 78 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 99 = 0.00000 0.00000 ## CrossOver 2 2 0 / 59 = 0.00000 0.00000 ## CrossAndInsert 3 0 0 / 73 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 79 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 110 without wiggling. # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 149 # generation 18: best score out of 20: T0287.try7-al8 221.22758 cost/residue, 179 clashes 0.16441 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 60 24 / 94 = 0.25532 0.00508 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 1 1 / 27 = 0.03704 0.00048 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 6 = 0.16667 0.00004 ## TweakPsiSegment 0 6 2 / 7 = 0.28571 0.00116 ## TweakPsiPhiSubtree 1 3 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 5 33 11 / 55 = 0.20000 0.00678 ## TweakHbondSubtree 0 15 5 / 66 = 0.07576 0.00480 ## TweakHbondSegment 0 24 9 / 58 = 0.15517 0.00398 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 16 6 / 20 = 0.30000 0.00115 ## OneRotamer 0 5 1 / 16 = 0.06250 0.00086 ## ClashingRotamer 0 0 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 31 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 114 = 0.00877 0.00009 ## CloseGap 0 7 4 / 156 = 0.02564 0.00435 ## HealGap 0 29 5 / 97 = 0.05155 0.00037 ## MoveGap 0 0 0 / 93 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 87 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 372 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 81 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 104 = 0.00000 0.00000 ## CrossOver 2 2 0 / 62 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 77 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 80 = 0.00000 0.00000 # Closing gap before 154 without wiggling. # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 19: best score out of 20: T0287.try7-al8 221.18817 cost/residue, 178 clashes 0.16518 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 62 26 / 98 = 0.26531 0.00528 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 1 1 / 28 = 0.03571 0.00047 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 6 = 0.16667 0.00004 ## TweakPsiSegment 0 8 4 / 11 = 0.36364 0.00076 ## TweakPsiPhiSubtree 1 3 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 5 37 12 / 66 = 0.18182 0.00625 ## TweakHbondSubtree 0 16 6 / 68 = 0.08824 0.00472 ## TweakHbondSegment 0 28 12 / 66 = 0.18182 0.00353 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 7 / 23 = 0.30435 0.00181 ## OneRotamer 0 5 1 / 20 = 0.05000 0.00069 ## ClashingRotamer 0 0 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 33 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 117 = 0.00855 0.00009 ## CloseGap 0 7 5 / 163 = 0.03067 0.00418 ## HealGap 0 29 5 / 99 = 0.05051 0.00036 ## MoveGap 0 0 0 / 95 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 91 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 388 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 87 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 109 = 0.00000 0.00000 ## CrossOver 2 2 0 / 63 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 81 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 87 = 0.00000 0.00000 # Closing gap before 33 next to short segment # Closing gap before 36 next to short segment # Closing gap before 184 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 20: best score out of 20: T0287.try7-al8 221.08755 cost/residue, 178 clashes 0.16518 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 64 27 / 105 = 0.25714 0.00493 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 1 / 31 = 0.03226 0.00042 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 6 = 0.16667 0.00004 ## TweakPsiSegment 0 8 4 / 13 = 0.30769 0.00064 ## TweakPsiPhiSubtree 1 3 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 6 41 14 / 74 = 0.18919 0.00632 ## TweakHbondSubtree 0 18 7 / 71 = 0.09859 0.00457 ## TweakHbondSegment 0 29 12 / 68 = 0.17647 0.00342 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 19 7 / 24 = 0.29167 0.00174 ## OneRotamer 0 6 2 / 21 = 0.09524 0.00545 ## ClashingRotamer 0 0 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 35 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 120 = 0.00833 0.00008 ## CloseGap 0 8 6 / 174 = 0.03448 0.00397 ## HealGap 0 29 5 / 102 = 0.04902 0.00035 ## MoveGap 0 0 0 / 102 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 94 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 404 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 92 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 114 = 0.00000 0.00000 ## CrossOver 2 2 0 / 64 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 86 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 92 = 0.00000 0.00000 # Closing gap before 149 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 99 next to short segment # Closing gap before 36 next to short segment # generation 21: best score out of 20: T0287.try7-al8 221.04480 cost/residue, 180 clashes 0.16452 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 66 28 / 111 = 0.25225 0.00466 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 1 / 32 = 0.03125 0.00041 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 7 = 0.14286 0.00003 ## TweakPsiSegment 0 9 4 / 15 = 0.26667 0.00056 ## TweakPsiPhiSubtree 1 3 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 6 43 16 / 84 = 0.19048 0.00652 ## TweakHbondSubtree 0 19 7 / 73 = 0.09589 0.00445 ## TweakHbondSegment 0 31 14 / 71 = 0.19718 0.00447 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 19 7 / 24 = 0.29167 0.00174 ## OneRotamer 0 8 3 / 30 = 0.10000 0.00487 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 37 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 123 = 0.00813 0.00008 ## CloseGap 0 9 7 / 184 = 0.03804 0.00452 ## HealGap 0 31 5 / 106 = 0.04717 0.00034 ## MoveGap 0 0 0 / 110 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 99 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 420 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 95 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 119 = 0.00000 0.00000 ## CrossOver 2 2 0 / 66 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 88 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 93 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 149 next to short segment # generation 22: best score out of 20: T0287.try7-al8 220.91261 cost/residue, 180 clashes 0.16402 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 70 29 / 116 = 0.25000 0.00560 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 1 2 / 34 = 0.05882 0.00182 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 7 = 0.14286 0.00003 ## TweakPsiSegment 0 10 5 / 16 = 0.31250 0.00067 ## TweakPsiPhiSubtree 1 3 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 6 48 19 / 94 = 0.20213 0.00683 ## TweakHbondSubtree 0 20 7 / 75 = 0.09333 0.00433 ## TweakHbondSegment 0 31 15 / 76 = 0.19737 0.00436 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 20 7 / 26 = 0.26923 0.00161 ## OneRotamer 0 8 4 / 42 = 0.09524 0.00381 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 37 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 127 = 0.00787 0.00008 ## CloseGap 0 10 8 / 188 = 0.04255 0.00519 ## HealGap 0 31 6 / 108 = 0.05556 0.00034 ## MoveGap 0 0 0 / 114 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 104 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 433 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 98 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 128 = 0.00000 0.00000 ## CrossOver 2 2 0 / 67 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 98 = 0.00000 0.00000 # Closing gap before 99 next to short segment # Closing gap before 36 next to short segment # generation 23: best score out of 20: T0287.try7-al8 220.80112 cost/residue, 180 clashes 0.16402 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 72 30 / 122 = 0.24590 0.00533 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 2 / 37 = 0.05405 0.00167 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 8 = 0.12500 0.00003 ## TweakPsiSegment 0 10 5 / 17 = 0.29412 0.00063 ## TweakPsiPhiSubtree 1 3 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 7 50 20 / 102 = 0.19608 0.00656 ## TweakHbondSubtree 0 20 7 / 81 = 0.08642 0.00401 ## TweakHbondSegment 0 35 15 / 85 = 0.17647 0.00390 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 21 8 / 30 = 0.26667 0.00142 ## OneRotamer 0 10 5 / 46 = 0.10870 0.00499 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 39 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 130 = 0.00769 0.00008 ## CloseGap 0 10 8 / 194 = 0.04124 0.00503 ## HealGap 0 33 8 / 111 = 0.07207 0.00153 ## MoveGap 0 0 0 / 116 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 105 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 455 = 0.00220 0.00025 ## InsertFragment 0 0 0 / 102 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 131 = 0.00000 0.00000 ## CrossOver 2 2 0 / 67 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 96 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 102 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 24: best score out of 20: T0287.try7-al8 220.78661 cost/residue, 180 clashes 0.16386 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 74 31 / 128 = 0.24219 0.00575 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 2 / 41 = 0.04878 0.00151 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 3 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 8 = 0.12500 0.00003 ## TweakPsiSegment 0 10 5 / 18 = 0.27778 0.00059 ## TweakPsiPhiSubtree 1 3 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 9 51 21 / 106 = 0.19811 0.00680 ## TweakHbondSubtree 0 21 8 / 85 = 0.09412 0.00406 ## TweakHbondSegment 0 38 16 / 91 = 0.17582 0.00390 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 21 8 / 30 = 0.26667 0.00142 ## OneRotamer 0 10 5 / 50 = 0.10000 0.00459 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 40 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 133 = 0.00752 0.00008 ## CloseGap 0 10 8 / 206 = 0.03883 0.00474 ## HealGap 0 37 10 / 120 = 0.08333 0.00150 ## MoveGap 0 0 0 / 120 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 110 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 474 = 0.00211 0.00024 ## InsertFragment 0 0 0 / 104 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 133 = 0.00000 0.00000 ## CrossOver 2 2 0 / 68 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 100 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 109 = 0.00000 0.00000 # Closing gap before 178 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 25: best score out of 20: T0287.try7-al8 220.73775 cost/residue, 182 clashes 0.16588 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 75 31 / 133 = 0.23308 0.00553 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 2 / 43 = 0.04651 0.00144 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 3 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 8 = 0.12500 0.00003 ## TweakPsiSegment 0 11 6 / 21 = 0.28571 0.00057 ## TweakPsiPhiSubtree 1 3 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 9 54 21 / 114 = 0.18421 0.00632 ## TweakHbondSubtree 0 22 9 / 89 = 0.10112 0.00408 ## TweakHbondSegment 0 41 18 / 97 = 0.18557 0.00433 ## TweakMultimer 34 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 22 8 / 31 = 0.25806 0.00138 ## OneRotamer 0 12 5 / 58 = 0.08621 0.00396 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 40 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 136 = 0.00735 0.00007 ## CloseGap 0 11 9 / 211 = 0.04265 0.00482 ## HealGap 0 37 10 / 126 = 0.07937 0.00143 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 114 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 495 = 0.00202 0.00023 ## InsertFragment 0 0 0 / 108 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 137 = 0.00000 0.00000 ## CrossOver 2 2 0 / 68 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 104 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 116 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 26: best score out of 20: T0287.try7-al8 220.67554 cost/residue, 180 clashes 0.16542 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 76 32 / 139 = 0.23022 0.00589 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 2 / 49 = 0.04082 0.00126 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 3 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 4 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 4 2 / 9 = 0.22222 0.00597 ## TweakPsiSegment 0 11 6 / 23 = 0.26087 0.00052 ## TweakPsiPhiSubtree 1 4 1 / 8 = 0.12500 0.01388 ## TweakPsiPhiSegment 9 56 21 / 122 = 0.17213 0.00590 ## TweakHbondSubtree 0 22 9 / 90 = 0.10000 0.00403 ## TweakHbondSegment 0 46 20 / 108 = 0.18519 0.00494 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 23 9 / 34 = 0.26471 0.00128 ## OneRotamer 0 13 6 / 62 = 0.09677 0.00549 ## ClashingRotamer 0 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 43 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 140 = 0.00714 0.00007 ## CloseGap 0 11 9 / 216 = 0.04167 0.00471 ## HealGap 0 37 10 / 135 = 0.07407 0.00134 ## MoveGap 0 0 0 / 126 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 115 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 504 = 0.00198 0.00022 ## InsertFragment 0 0 0 / 113 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 143 = 0.00000 0.00000 ## CrossOver 2 2 0 / 70 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 118 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 27: best score out of 20: T0287.try7-al8 220.52324 cost/residue, 183 clashes 0.16385 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 77 32 / 142 = 0.22535 0.00577 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 2 / 50 = 0.04000 0.00124 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 3 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 9 3 / 20 = 0.15000 0.01167 ## TweakPsiSegment 0 11 6 / 23 = 0.26087 0.00052 ## TweakPsiPhiSubtree 3 8 3 / 22 = 0.13636 0.00541 ## TweakPsiPhiSegment 9 58 21 / 125 = 0.16800 0.00576 ## TweakHbondSubtree 0 23 10 / 95 = 0.10526 0.00383 ## TweakHbondSegment 0 46 20 / 108 = 0.18519 0.00494 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 23 9 / 34 = 0.26471 0.00128 ## OneRotamer 0 13 6 / 63 = 0.09524 0.00540 ## ClashingRotamer 0 0 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 45 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 146 = 0.00685 0.00007 ## CloseGap 0 11 9 / 223 = 0.04036 0.00456 ## HealGap 0 38 11 / 141 = 0.07801 0.00128 ## MoveGap 0 0 0 / 128 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 116 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 518 = 0.00193 0.00022 ## InsertFragment 0 0 0 / 119 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 148 = 0.00000 0.00000 ## CrossOver 2 2 0 / 71 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 106 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 124 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 28: best score out of 20: T0287.try7-al8 220.47292 cost/residue, 182 clashes 0.16385 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 77 32 / 147 = 0.21769 0.00557 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 2 / 52 = 0.03846 0.00119 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 4 1 / 8 = 0.12500 0.00204 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 14 7 / 31 = 0.22581 0.01229 ## TweakPsiSegment 0 11 6 / 24 = 0.25000 0.00050 ## TweakPsiPhiSubtree 3 10 3 / 27 = 0.11111 0.00441 ## TweakPsiPhiSegment 9 59 22 / 127 = 0.17323 0.00572 ## TweakHbondSubtree 0 24 11 / 97 = 0.11340 0.00394 ## TweakHbondSegment 0 49 20 / 114 = 0.17544 0.00468 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 24 9 / 36 = 0.25000 0.00121 ## OneRotamer 0 14 7 / 70 = 0.10000 0.00558 ## ClashingRotamer 0 0 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 48 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 147 = 0.00680 0.00007 ## CloseGap 0 11 9 / 224 = 0.04018 0.00454 ## HealGap 0 38 11 / 150 = 0.07333 0.00121 ## MoveGap 0 0 0 / 131 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 121 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 532 = 0.00188 0.00021 ## InsertFragment 0 0 0 / 123 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 153 = 0.00000 0.00000 ## CrossOver 2 2 0 / 72 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 110 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 127 = 0.00000 0.00000 # Closing gap before 152 next to short segment # Closing gap before 163 without wiggling. # Closing gap before 152 next to short segment # generation 29: best score out of 20: T0287.try7-al8 220.46770 cost/residue, 182 clashes 0.16385 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 77 32 / 148 = 0.21622 0.00554 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 2 / 54 = 0.03704 0.00115 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 5 1 / 15 = 0.06667 0.00109 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 16 9 / 40 = 0.22500 0.00953 ## TweakPsiSegment 0 12 7 / 26 = 0.26923 0.00057 ## TweakPsiPhiSubtree 4 10 3 / 27 = 0.11111 0.00441 ## TweakPsiPhiSegment 9 62 22 / 132 = 0.16667 0.00551 ## TweakHbondSubtree 0 24 11 / 99 = 0.11111 0.00386 ## TweakHbondSegment 1 49 20 / 118 = 0.16949 0.00452 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 25 9 / 37 = 0.24324 0.00117 ## OneRotamer 0 16 9 / 75 = 0.12000 0.00536 ## ClashingRotamer 0 0 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 50 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 151 = 0.00662 0.00007 ## CloseGap 0 11 9 / 231 = 0.03896 0.00441 ## HealGap 0 41 13 / 159 = 0.08176 0.00120 ## MoveGap 0 0 0 / 134 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 125 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 541 = 0.00185 0.00021 ## InsertFragment 0 0 0 / 126 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 158 = 0.00000 0.00000 ## CrossOver 2 2 0 / 76 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 115 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 132 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 30: best score out of 20: T0287.try7-al8 220.26984 cost/residue, 190 clashes 0.16287 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 79 34 / 153 = 0.22222 0.00592 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 2 / 59 = 0.03390 0.00105 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 6 1 / 18 = 0.05556 0.00091 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 24 14 / 54 = 0.25926 0.01143 ## TweakPsiSegment 0 13 7 / 27 = 0.25926 0.00055 ## TweakPsiPhiSubtree 5 10 3 / 31 = 0.09677 0.00384 ## TweakPsiPhiSegment 9 62 22 / 137 = 0.16058 0.00531 ## TweakHbondSubtree 0 24 11 / 100 = 0.11000 0.00382 ## TweakHbondSegment 1 49 20 / 120 = 0.16667 0.00445 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 26 9 / 39 = 0.23077 0.00111 ## OneRotamer 0 18 10 / 84 = 0.11905 0.00513 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 52 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 154 = 0.00649 0.00007 ## CloseGap 0 11 9 / 235 = 0.03830 0.00433 ## HealGap 0 42 14 / 163 = 0.08589 0.00124 ## MoveGap 0 0 0 / 137 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 128 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 555 = 0.00180 0.00020 ## InsertFragment 0 0 0 / 129 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 160 = 0.00000 0.00000 ## CrossOver 2 2 0 / 79 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 117 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 133 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 97 next to short segment # Closing gap before 152 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 31: best score out of 20: T0287.try7-al8 220.25237 cost/residue, 186 clashes 0.16287 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 81 35 / 157 = 0.22293 0.00618 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 1 2 / 62 = 0.03226 0.00100 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 20 = 0.05000 0.00082 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 27 18 / 65 = 0.27692 0.00992 ## TweakPsiSegment 0 14 8 / 28 = 0.28571 0.00067 ## TweakPsiPhiSubtree 5 10 3 / 32 = 0.09375 0.00372 ## TweakPsiPhiSegment 9 62 22 / 138 = 0.15942 0.00527 ## TweakHbondSubtree 0 24 11 / 102 = 0.10784 0.00375 ## TweakHbondSegment 1 51 22 / 129 = 0.17054 0.00424 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 26 9 / 39 = 0.23077 0.00111 ## OneRotamer 0 21 10 / 89 = 0.11236 0.00485 ## ClashingRotamer 0 0 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 54 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 157 = 0.00637 0.00006 ## CloseGap 0 11 9 / 242 = 0.03719 0.00421 ## HealGap 0 43 15 / 170 = 0.08824 0.00119 ## MoveGap 0 0 0 / 140 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 132 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 572 = 0.00175 0.00019 ## InsertFragment 0 0 0 / 131 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 163 = 0.00000 0.00000 ## CrossOver 2 2 0 / 82 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 136 = 0.00000 0.00000 # Closing gap before 69 without wiggling. # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 32: best score out of 20: T0287.try7-al8 220.13582 cost/residue, 184 clashes 0.16287 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 85 36 / 167 = 0.21557 0.00584 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 1 2 / 63 = 0.03175 0.00098 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 1 / 21 = 0.04762 0.00078 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 29 20 / 74 = 0.27027 0.00936 ## TweakPsiSegment 0 15 9 / 32 = 0.28125 0.00062 ## TweakPsiPhiSubtree 8 11 3 / 34 = 0.08824 0.00350 ## TweakPsiPhiSegment 10 63 22 / 142 = 0.15493 0.00512 ## TweakHbondSubtree 0 24 11 / 103 = 0.10680 0.00371 ## TweakHbondSegment 1 51 22 / 129 = 0.17054 0.00424 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 27 10 / 40 = 0.25000 0.00112 ## OneRotamer 0 23 12 / 97 = 0.12371 0.00763 ## ClashingRotamer 0 0 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 56 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 161 = 0.00621 0.00006 ## CloseGap 0 11 9 / 248 = 0.03629 0.00410 ## HealGap 0 44 15 / 177 = 0.08475 0.00115 ## MoveGap 0 0 0 / 146 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 135 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 591 = 0.00169 0.00019 ## InsertFragment 0 0 0 / 134 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 166 = 0.00000 0.00000 ## CrossOver 2 2 0 / 82 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 139 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 33: best score out of 20: T0287.try7-al8 219.93300 cost/residue, 179 clashes 0.16287 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 87 36 / 171 = 0.21053 0.00570 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 1 2 / 65 = 0.03077 0.00095 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 2 / 22 = 0.09091 0.00077 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 32 23 / 85 = 0.27059 0.00823 ## TweakPsiSegment 0 15 9 / 33 = 0.27273 0.00060 ## TweakPsiPhiSubtree 8 12 4 / 37 = 0.10811 0.00490 ## TweakPsiPhiSegment 12 65 22 / 147 = 0.14966 0.00494 ## TweakHbondSubtree 0 25 12 / 106 = 0.11321 0.00395 ## TweakHbondSegment 1 53 22 / 132 = 0.16667 0.00415 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 27 10 / 40 = 0.25000 0.00112 ## OneRotamer 0 27 13 / 111 = 0.11712 0.00849 ## ClashingRotamer 0 0 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 58 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 164 = 0.00610 0.00006 ## CloseGap 0 11 9 / 252 = 0.03571 0.00404 ## HealGap 0 44 15 / 182 = 0.08242 0.00111 ## MoveGap 0 0 0 / 147 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 137 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 604 = 0.00166 0.00018 ## InsertFragment 0 0 0 / 138 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 170 = 0.00000 0.00000 ## CrossOver 2 2 1 / 84 = 0.01190 0.00002 ## CrossAndInsert 4 0 0 / 127 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 144 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 34: best score out of 20: T0287.try7-al8 219.93300 cost/residue, 179 clashes 0.16287 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 90 37 / 177 = 0.20904 0.00551 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 1 2 / 66 = 0.03030 0.00094 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 1 11 2 / 25 = 0.08000 0.00068 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 39 26 / 99 = 0.26263 0.00707 ## TweakPsiSegment 0 16 9 / 34 = 0.26471 0.00058 ## TweakPsiPhiSubtree 8 13 4 / 42 = 0.09524 0.00432 ## TweakPsiPhiSegment 12 65 24 / 151 = 0.15894 0.00487 ## TweakHbondSubtree 0 25 12 / 108 = 0.11111 0.00387 ## TweakHbondSegment 1 54 24 / 136 = 0.17647 0.00440 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 27 12 / 43 = 0.27907 0.00124 ## OneRotamer 0 28 14 / 121 = 0.11570 0.00807 ## ClashingRotamer 0 0 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 59 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 167 = 0.00599 0.00006 ## CloseGap 0 11 9 / 257 = 0.03502 0.00396 ## HealGap 0 45 15 / 185 = 0.08108 0.00110 ## MoveGap 0 0 0 / 149 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 139 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 618 = 0.00162 0.00018 ## InsertFragment 0 0 0 / 141 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 175 = 0.00000 0.00000 ## CrossOver 2 2 1 / 85 = 0.01176 0.00002 ## CrossAndInsert 4 0 0 / 128 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 148 = 0.00000 0.00000 # Closing gap before 152 next to short segment # Closing gap before 36 next to short segment # generation 35: best score out of 20: T0287.try7-al8 219.88966 cost/residue, 179 clashes 0.16391 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 92 38 / 181 = 0.20994 0.00554 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 2 / 66 = 0.03030 0.00094 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 1 11 2 / 26 = 0.07692 0.00065 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 42 28 / 109 = 0.25688 0.00665 ## TweakPsiSegment 0 17 9 / 36 = 0.25000 0.00055 ## TweakPsiPhiSubtree 8 15 6 / 47 = 0.12766 0.00493 ## TweakPsiPhiSegment 12 65 24 / 155 = 0.15484 0.00475 ## TweakHbondSubtree 0 26 12 / 111 = 0.10811 0.00377 ## TweakHbondSegment 1 55 25 / 140 = 0.17857 0.00471 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 29 12 / 46 = 0.26087 0.00116 ## OneRotamer 0 30 15 / 132 = 0.11364 0.00759 ## ClashingRotamer 0 0 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 2 1 0 / 60 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 168 = 0.00595 0.00006 ## CloseGap 0 11 9 / 261 = 0.03448 0.00390 ## HealGap 0 45 15 / 189 = 0.07937 0.00107 ## MoveGap 0 0 0 / 151 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 144 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 628 = 0.00159 0.00018 ## InsertFragment 0 0 0 / 144 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 179 = 0.00000 0.00000 ## CrossOver 2 2 1 / 90 = 0.01111 0.00002 ## CrossAndInsert 4 0 0 / 133 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 153 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 36: best score out of 20: T0287.try7-al8 219.88966 cost/residue, 179 clashes 0.16391 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 94 39 / 189 = 0.20635 0.00546 ## JiggleSubtree 0 1 0 / 7 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 2 / 67 = 0.02985 0.00092 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 1 12 3 / 27 = 0.11111 0.00066 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 45 29 / 119 = 0.24370 0.00609 ## TweakPsiSegment 0 18 9 / 37 = 0.24324 0.00053 ## TweakPsiPhiSubtree 10 16 7 / 50 = 0.14000 0.00482 ## TweakPsiPhiSegment 12 66 24 / 156 = 0.15385 0.00472 ## TweakHbondSubtree 0 26 12 / 112 = 0.10714 0.00373 ## TweakHbondSegment 1 55 25 / 147 = 0.17007 0.00449 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 29 12 / 47 = 0.25532 0.00113 ## OneRotamer 0 31 16 / 142 = 0.11268 0.00709 ## ClashingRotamer 0 0 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 63 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 170 = 0.00588 0.00006 ## CloseGap 0 11 9 / 268 = 0.03358 0.00380 ## HealGap 0 46 16 / 193 = 0.08290 0.00120 ## MoveGap 0 0 0 / 151 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 149 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 643 = 0.00156 0.00017 ## InsertFragment 0 0 0 / 146 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 183 = 0.00000 0.00000 ## CrossOver 2 2 1 / 95 = 0.01053 0.00002 ## CrossAndInsert 4 0 0 / 135 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 155 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 37: best score out of 20: T0287.try7-al8 219.46588 cost/residue, 172 clashes 0.16244 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 96 41 / 195 = 0.21026 0.00552 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 2 / 71 = 0.02817 0.00087 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 1 13 3 / 28 = 0.10714 0.00063 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 47 31 / 126 = 0.24603 0.00583 ## TweakPsiSegment 0 19 9 / 40 = 0.22500 0.00049 ## TweakPsiPhiSubtree 10 17 8 / 59 = 0.13559 0.00411 ## TweakPsiPhiSegment 12 66 24 / 158 = 0.15190 0.00466 ## TweakHbondSubtree 0 26 12 / 114 = 0.10526 0.00367 ## TweakHbondSegment 1 55 25 / 151 = 0.16556 0.00437 ## TweakMultimer 39 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 31 13 / 51 = 0.25490 0.00119 ## OneRotamer 0 34 19 / 150 = 0.12667 0.01136 ## ClashingRotamer 0 0 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 65 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 173 = 0.00578 0.00006 ## CloseGap 0 11 9 / 271 = 0.03321 0.00376 ## HealGap 0 47 17 / 201 = 0.08458 0.00130 ## MoveGap 0 0 0 / 155 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 151 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 650 = 0.00154 0.00017 ## InsertFragment 0 0 0 / 149 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 187 = 0.00000 0.00000 ## CrossOver 2 2 1 / 97 = 0.01031 0.00002 ## CrossAndInsert 4 0 0 / 140 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 160 = 0.00000 0.00000 # Closing gap before 154 next to short segment # Closing gap before 56 without wiggling. # Closing gap before 36 next to short segment # Closing gap before 33 next to short segment # Closing gap before 36 next to short segment # generation 38: best score out of 20: T0287.try7-al8 219.46588 cost/residue, 172 clashes 0.16244 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 96 41 / 197 = 0.20812 0.00546 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 2 / 74 = 0.02703 0.00084 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 1 13 3 / 28 = 0.10714 0.00063 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 47 31 / 131 = 0.23664 0.00561 ## TweakPsiSegment 0 21 10 / 42 = 0.23810 0.00061 ## TweakPsiPhiSubtree 10 19 9 / 63 = 0.14286 0.00387 ## TweakPsiPhiSegment 12 68 24 / 163 = 0.14724 0.00451 ## TweakHbondSubtree 0 26 12 / 119 = 0.10084 0.00352 ## TweakHbondSegment 1 55 25 / 155 = 0.16129 0.00425 ## TweakMultimer 40 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 31 13 / 51 = 0.25490 0.00119 ## OneRotamer 0 39 23 / 168 = 0.13690 0.01170 ## ClashingRotamer 0 0 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 69 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 177 = 0.00565 0.00006 ## CloseGap 0 12 9 / 279 = 0.03226 0.00365 ## HealGap 0 47 17 / 204 = 0.08333 0.00128 ## MoveGap 0 0 0 / 158 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 155 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 659 = 0.00152 0.00017 ## InsertFragment 0 0 0 / 152 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 193 = 0.00000 0.00000 ## CrossOver 2 2 1 / 97 = 0.01031 0.00002 ## CrossAndInsert 4 0 0 / 145 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 161 = 0.00000 0.00000 # Closing gap before 33 next to short segment # Closing gap before 36 next to short segment # Closing gap before 99 next to short segment # generation 39: best score out of 20: T0287.try7-al8 219.45520 cost/residue, 176 clashes 0.16382 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 96 41 / 200 = 0.20500 0.00538 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 1 2 / 74 = 0.02703 0.00084 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 1 13 3 / 28 = 0.10714 0.00063 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 50 32 / 135 = 0.23704 0.00557 ## TweakPsiSegment 0 21 10 / 42 = 0.23810 0.00061 ## TweakPsiPhiSubtree 10 22 10 / 69 = 0.14493 0.00388 ## TweakPsiPhiSegment 12 69 25 / 166 = 0.15060 0.00446 ## TweakHbondSubtree 0 28 12 / 122 = 0.09836 0.00343 ## TweakHbondSegment 1 58 26 / 160 = 0.16250 0.00479 ## TweakMultimer 44 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 31 13 / 51 = 0.25490 0.00119 ## OneRotamer 0 41 28 / 190 = 0.14737 0.01205 ## ClashingRotamer 0 0 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 71 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 177 = 0.00565 0.00006 ## CloseGap 0 14 9 / 285 = 0.03158 0.00357 ## HealGap 0 47 17 / 207 = 0.08213 0.00127 ## MoveGap 0 0 0 / 161 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 162 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 673 = 0.00149 0.00017 ## InsertFragment 0 0 0 / 155 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 198 = 0.00000 0.00000 ## CrossOver 2 2 1 / 99 = 0.01010 0.00002 ## CrossAndInsert 4 0 0 / 149 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 163 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 152 next to short segment # generation 40: best score out of 20: T0287.try7-al8 219.16829 cost/residue, 173 clashes 0.16388 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 100 45 / 209 = 0.21531 0.00564 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 1 2 / 78 = 0.02564 0.00079 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 1 13 3 / 28 = 0.10714 0.00063 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 50 33 / 140 = 0.23571 0.00538 ## TweakPsiSegment 0 21 10 / 42 = 0.23810 0.00061 ## TweakPsiPhiSubtree 10 23 11 / 71 = 0.15493 0.00383 ## TweakPsiPhiSegment 13 72 26 / 173 = 0.15029 0.00462 ## TweakHbondSubtree 0 30 13 / 126 = 0.10317 0.00346 ## TweakHbondSegment 1 59 26 / 166 = 0.15663 0.00462 ## TweakMultimer 47 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 31 13 / 52 = 0.25000 0.00117 ## OneRotamer 0 43 30 / 207 = 0.14493 0.01318 ## ClashingRotamer 0 0 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 74 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 180 = 0.00556 0.00006 ## CloseGap 0 14 9 / 287 = 0.03136 0.00355 ## HealGap 0 47 17 / 212 = 0.08019 0.00124 ## MoveGap 0 0 0 / 162 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 166 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 684 = 0.00146 0.00016 ## InsertFragment 0 0 0 / 158 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 200 = 0.00000 0.00000 ## CrossOver 2 2 1 / 101 = 0.00990 0.00002 ## CrossAndInsert 4 0 0 / 150 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 166 = 0.00000 0.00000 # Closing gap before 152 next to short segment # generation 41: best score out of 20: T0287.try7-al8 219.13158 cost/residue, 173 clashes 0.16362 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 103 47 / 217 = 0.21659 0.00560 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 1 2 / 78 = 0.02564 0.00079 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 1 13 3 / 28 = 0.10714 0.00063 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 52 34 / 146 = 0.23288 0.00518 ## TweakPsiSegment 0 21 10 / 43 = 0.23256 0.00059 ## TweakPsiPhiSubtree 11 26 14 / 80 = 0.17500 0.00478 ## TweakPsiPhiSegment 14 74 26 / 179 = 0.14525 0.00446 ## TweakHbondSubtree 1 30 13 / 128 = 0.10156 0.00341 ## TweakHbondSegment 1 60 28 / 172 = 0.16279 0.00452 ## TweakMultimer 47 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 33 16 / 55 = 0.29091 0.00127 ## OneRotamer 0 45 31 / 218 = 0.14220 0.01329 ## ClashingRotamer 0 0 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 75 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 184 = 0.00543 0.00006 ## CloseGap 0 14 9 / 290 = 0.03103 0.00351 ## HealGap 0 49 18 / 217 = 0.08295 0.00121 ## MoveGap 0 0 0 / 162 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 171 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 692 = 0.00145 0.00016 ## InsertFragment 0 0 0 / 163 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 206 = 0.00000 0.00000 ## CrossOver 2 2 1 / 104 = 0.00962 0.00002 ## CrossAndInsert 4 0 0 / 151 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 170 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 42: best score out of 20: T0287.try7-al8 218.86163 cost/residue, 176 clashes 0.16362 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 103 48 / 226 = 0.21239 0.00553 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 1 2 / 79 = 0.02532 0.00078 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 13 3 / 29 = 0.10345 0.00061 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 1 52 34 / 150 = 0.22667 0.00504 ## TweakPsiSegment 0 23 10 / 45 = 0.22222 0.00057 ## TweakPsiPhiSubtree 11 29 15 / 86 = 0.17442 0.00531 ## TweakPsiPhiSegment 15 74 26 / 180 = 0.14444 0.00444 ## TweakHbondSubtree 1 30 13 / 129 = 0.10078 0.00338 ## TweakHbondSegment 1 65 29 / 177 = 0.16384 0.00512 ## TweakMultimer 49 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 33 16 / 58 = 0.27586 0.00121 ## OneRotamer 0 49 33 / 232 = 0.14224 0.01402 ## ClashingRotamer 0 0 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 76 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 187 = 0.00535 0.00005 ## CloseGap 0 14 9 / 295 = 0.03051 0.00345 ## HealGap 0 49 18 / 222 = 0.08108 0.00118 ## MoveGap 0 0 0 / 166 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 174 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 706 = 0.00142 0.00016 ## InsertFragment 0 0 0 / 165 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 213 = 0.00000 0.00000 ## CrossOver 2 2 1 / 106 = 0.00943 0.00002 ## CrossAndInsert 4 0 0 / 152 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 173 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 43: best score out of 20: T0287.try7-al8 218.77925 cost/residue, 176 clashes 0.16351 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 105 51 / 233 = 0.21888 0.00550 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 1 2 / 80 = 0.02500 0.00077 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 13 3 / 31 = 0.09677 0.00057 ## TweakPhiSegment 0 6 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 54 35 / 155 = 0.22581 0.00541 ## TweakPsiSegment 0 24 10 / 47 = 0.21277 0.00054 ## TweakPsiPhiSubtree 11 29 15 / 89 = 0.16854 0.00513 ## TweakPsiPhiSegment 16 74 26 / 182 = 0.14286 0.00439 ## TweakHbondSubtree 1 30 14 / 134 = 0.10448 0.00332 ## TweakHbondSegment 1 66 31 / 183 = 0.16940 0.00528 ## TweakMultimer 51 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 35 17 / 60 = 0.28333 0.00120 ## OneRotamer 0 55 34 / 247 = 0.13765 0.01339 ## ClashingRotamer 0 0 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 78 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 190 = 0.00526 0.00005 ## CloseGap 0 14 9 / 298 = 0.03020 0.00342 ## HealGap 0 50 18 / 228 = 0.07895 0.00115 ## MoveGap 0 0 0 / 171 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 175 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 717 = 0.00139 0.00016 ## InsertFragment 0 0 0 / 165 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 216 = 0.00000 0.00000 ## CrossOver 2 2 1 / 109 = 0.00917 0.00002 ## CrossAndInsert 4 0 0 / 158 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 176 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 44: best score out of 20: T0287.try7-al8 218.68419 cost/residue, 176 clashes 0.16351 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 106 52 / 235 = 0.22128 0.00545 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 1 2 / 81 = 0.02469 0.00076 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 13 3 / 31 = 0.09677 0.00057 ## TweakPhiSegment 0 6 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 1 57 36 / 162 = 0.22222 0.00517 ## TweakPsiSegment 0 24 10 / 47 = 0.21277 0.00054 ## TweakPsiPhiSubtree 11 31 16 / 93 = 0.17204 0.00509 ## TweakPsiPhiSegment 16 75 26 / 186 = 0.13978 0.00429 ## TweakHbondSubtree 1 30 14 / 135 = 0.10370 0.00329 ## TweakHbondSegment 1 67 32 / 191 = 0.16754 0.00513 ## TweakMultimer 52 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 35 17 / 60 = 0.28333 0.00120 ## OneRotamer 0 62 37 / 269 = 0.13755 0.01297 ## ClashingRotamer 0 0 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 78 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 191 = 0.00524 0.00005 ## CloseGap 0 14 9 / 305 = 0.02951 0.00334 ## HealGap 0 52 19 / 233 = 0.08155 0.00113 ## MoveGap 0 0 0 / 174 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 179 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 732 = 0.00137 0.00015 ## InsertFragment 0 0 0 / 169 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 218 = 0.00000 0.00000 ## CrossOver 2 2 1 / 113 = 0.00885 0.00002 ## CrossAndInsert 4 0 0 / 159 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 177 = 0.00000 0.00000 # Closing gap before 182 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 45: best score out of 20: T0287.try7-al8 218.68393 cost/residue, 176 clashes 0.16351 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 107 52 / 240 = 0.21667 0.00534 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 40 = 0.00000 0.00000 ## OptSegment 0 1 2 / 81 = 0.02469 0.00076 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 13 3 / 31 = 0.09677 0.00057 ## TweakPhiSegment 0 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 1 59 36 / 166 = 0.21687 0.00505 ## TweakPsiSegment 0 24 10 / 47 = 0.21277 0.00054 ## TweakPsiPhiSubtree 12 32 17 / 99 = 0.17172 0.00494 ## TweakPsiPhiSegment 16 75 26 / 188 = 0.13830 0.00425 ## TweakHbondSubtree 1 31 15 / 139 = 0.10791 0.00349 ## TweakHbondSegment 1 70 34 / 199 = 0.17085 0.00499 ## TweakMultimer 53 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 37 17 / 62 = 0.27419 0.00116 ## OneRotamer 0 65 39 / 283 = 0.13781 0.01281 ## ClashingRotamer 0 0 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 78 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 197 = 0.00508 0.00005 ## CloseGap 0 15 10 / 311 = 0.03215 0.00329 ## HealGap 0 52 20 / 235 = 0.08511 0.00113 ## MoveGap 0 0 0 / 174 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 184 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 745 = 0.00134 0.00015 ## InsertFragment 0 0 0 / 170 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 223 = 0.00000 0.00000 ## CrossOver 2 3 1 / 118 = 0.00847 0.00002 ## CrossAndInsert 4 0 0 / 163 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 183 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 152 next to short segment # Closing gap before 99 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 46: best score out of 20: T0287.try7-al8 218.55023 cost/residue, 176 clashes 0.16493 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 109 54 / 248 = 0.21774 0.00525 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 40 = 0.00000 0.00000 ## OptSegment 0 1 2 / 82 = 0.02439 0.00075 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 13 3 / 32 = 0.09375 0.00055 ## TweakPhiSegment 0 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 1 61 37 / 173 = 0.21387 0.00485 ## TweakPsiSegment 0 24 10 / 48 = 0.20833 0.00053 ## TweakPsiPhiSubtree 12 34 17 / 104 = 0.16346 0.00470 ## TweakPsiPhiSegment 16 75 26 / 189 = 0.13757 0.00422 ## TweakHbondSubtree 2 32 15 / 142 = 0.10563 0.00341 ## TweakHbondSegment 1 71 35 / 204 = 0.17157 0.00556 ## TweakMultimer 53 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 38 17 / 63 = 0.26984 0.00114 ## OneRotamer 0 68 39 / 305 = 0.12787 0.01189 ## ClashingRotamer 0 0 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 80 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 200 = 0.00500 0.00005 ## CloseGap 0 16 10 / 317 = 0.03155 0.00323 ## HealGap 0 53 20 / 241 = 0.08299 0.00110 ## MoveGap 0 0 0 / 179 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 187 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 756 = 0.00132 0.00015 ## InsertFragment 0 0 0 / 171 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 224 = 0.00000 0.00000 ## CrossOver 3 3 1 / 119 = 0.00840 0.00002 ## CrossAndInsert 4 0 0 / 165 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 186 = 0.00000 0.00000 # Closing gap before 163 without wiggling. # Closing gap before 104 without wiggling. # Closing gap before 36 next to short segment # Closing gap before 23 without wiggling. # generation 47: best score out of 20: T0287.try7-al8 218.55023 cost/residue, 176 clashes 0.16493 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 111 55 / 252 = 0.21825 0.00524 ## JiggleSubtree 0 1 0 / 9 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 2 / 82 = 0.02439 0.00075 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 14 4 / 33 = 0.12121 0.00107 ## TweakPhiSegment 0 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 1 61 38 / 178 = 0.21348 0.00472 ## TweakPsiSegment 0 25 10 / 49 = 0.20408 0.00052 ## TweakPsiPhiSubtree 12 36 18 / 111 = 0.16216 0.00447 ## TweakPsiPhiSegment 17 75 26 / 190 = 0.13684 0.00420 ## TweakHbondSubtree 2 34 16 / 149 = 0.10738 0.00335 ## TweakHbondSegment 1 74 37 / 218 = 0.16972 0.00567 ## TweakMultimer 56 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 39 18 / 66 = 0.27273 0.00112 ## OneRotamer 0 69 41 / 315 = 0.13016 0.01179 ## ClashingRotamer 0 0 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 80 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 202 = 0.00495 0.00005 ## CloseGap 0 16 10 / 322 = 0.03106 0.00318 ## HealGap 0 53 20 / 247 = 0.08097 0.00107 ## MoveGap 0 0 0 / 183 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 189 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 767 = 0.00130 0.00015 ## InsertFragment 0 0 0 / 178 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 226 = 0.00000 0.00000 ## CrossOver 3 3 1 / 120 = 0.00833 0.00002 ## CrossAndInsert 4 0 0 / 167 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 187 = 0.00000 0.00000 # generation 48: best score out of 20: T0287.try7-al8 218.49924 cost/residue, 176 clashes 0.16417 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 111 55 / 260 = 0.21154 0.00508 ## JiggleSubtree 0 1 0 / 10 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 2 / 82 = 0.02439 0.00075 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 14 4 / 34 = 0.11765 0.00103 ## TweakPhiSegment 0 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 1 62 39 / 183 = 0.21311 0.00459 ## TweakPsiSegment 0 25 10 / 50 = 0.20000 0.00051 ## TweakPsiPhiSubtree 13 38 19 / 123 = 0.15447 0.00407 ## TweakPsiPhiSegment 17 76 27 / 192 = 0.14062 0.00419 ## TweakHbondSubtree 2 34 16 / 152 = 0.10526 0.00329 ## TweakHbondSegment 1 80 40 / 229 = 0.17467 0.00547 ## TweakMultimer 56 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 39 18 / 68 = 0.26471 0.00109 ## OneRotamer 0 71 42 / 331 = 0.12689 0.01143 ## ClashingRotamer 0 0 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 83 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 205 = 0.00488 0.00005 ## CloseGap 0 16 10 / 322 = 0.03106 0.00318 ## HealGap 0 53 20 / 253 = 0.07905 0.00105 ## MoveGap 0 0 0 / 184 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 194 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 773 = 0.00129 0.00014 ## InsertFragment 0 0 0 / 178 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 231 = 0.00000 0.00000 ## CrossOver 3 4 1 / 123 = 0.00813 0.00002 ## CrossAndInsert 4 0 0 / 168 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 190 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 23 without wiggling. # generation 49: best score out of 20: T0287.try7-al8 218.21025 cost/residue, 174 clashes 0.16493 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 113 56 / 268 = 0.20896 0.00494 ## JiggleSubtree 0 1 0 / 10 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 1 2 / 82 = 0.02439 0.00075 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 2 15 4 / 38 = 0.10526 0.00093 ## TweakPhiSegment 0 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 1 63 40 / 187 = 0.21390 0.00450 ## TweakPsiSegment 0 25 10 / 50 = 0.20000 0.00051 ## TweakPsiPhiSubtree 13 42 19 / 131 = 0.14504 0.00382 ## TweakPsiPhiSegment 17 76 27 / 194 = 0.13918 0.00414 ## TweakHbondSubtree 2 34 16 / 153 = 0.10458 0.00327 ## TweakHbondSegment 1 82 41 / 238 = 0.17227 0.00553 ## TweakMultimer 56 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 39 18 / 68 = 0.26471 0.00109 ## OneRotamer 0 74 45 / 351 = 0.12821 0.01250 ## ClashingRotamer 0 0 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 84 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 205 = 0.00488 0.00005 ## CloseGap 0 17 10 / 327 = 0.03058 0.00313 ## HealGap 0 53 20 / 257 = 0.07782 0.00103 ## MoveGap 0 0 0 / 187 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 196 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 783 = 0.00128 0.00014 ## InsertFragment 0 0 0 / 181 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 234 = 0.00000 0.00000 ## CrossOver 3 4 1 / 124 = 0.00806 0.00002 ## CrossAndInsert 4 0 0 / 171 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 194 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 50: best score out of 20: T0287.try7-al8 218.16919 cost/residue, 174 clashes 0.16493 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 115 58 / 276 = 0.21014 0.00517 ## JiggleSubtree 0 1 0 / 10 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 1 2 / 82 = 0.02439 0.00075 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 15 4 / 40 = 0.10000 0.00088 ## TweakPhiSegment 0 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 1 65 41 / 191 = 0.21466 0.00443 ## TweakPsiSegment 0 25 10 / 50 = 0.20000 0.00051 ## TweakPsiPhiSubtree 14 43 19 / 133 = 0.14286 0.00376 ## TweakPsiPhiSegment 18 78 28 / 198 = 0.14141 0.00436 ## TweakHbondSubtree 2 35 16 / 156 = 0.10256 0.00320 ## TweakHbondSegment 1 82 42 / 245 = 0.17143 0.00549 ## TweakMultimer 57 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 39 18 / 69 = 0.26087 0.00107 ## OneRotamer 0 81 51 / 376 = 0.13564 0.01266 ## ClashingRotamer 0 0 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 85 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 208 = 0.00481 0.00005 ## CloseGap 0 17 10 / 331 = 0.03021 0.00309 ## HealGap 0 55 20 / 263 = 0.07605 0.00101 ## MoveGap 0 0 0 / 190 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 199 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 794 = 0.00126 0.00014 ## InsertFragment 0 0 0 / 182 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 239 = 0.00000 0.00000 ## CrossOver 3 4 1 / 125 = 0.00800 0.00002 ## CrossAndInsert 4 0 0 / 174 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 196 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 51: best score out of 20: T0287.try7-al8 218.05690 cost/residue, 177 clashes 0.16890 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 115 58 / 280 = 0.20714 0.00510 ## JiggleSubtree 0 1 0 / 10 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 1 2 / 85 = 0.02353 0.00073 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 16 4 / 44 = 0.09091 0.00080 ## TweakPhiSegment 0 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 1 68 43 / 194 = 0.22165 0.00438 ## TweakPsiSegment 0 26 10 / 52 = 0.19231 0.00049 ## TweakPsiPhiSubtree 15 46 21 / 138 = 0.15217 0.00396 ## TweakPsiPhiSegment 18 79 28 / 205 = 0.13659 0.00421 ## TweakHbondSubtree 2 36 16 / 159 = 0.10063 0.00314 ## TweakHbondSegment 1 85 45 / 260 = 0.17308 0.00565 ## TweakMultimer 57 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 39 19 / 70 = 0.27143 0.00109 ## OneRotamer 0 83 53 / 387 = 0.13695 0.01279 ## ClashingRotamer 0 0 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 86 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 210 = 0.00476 0.00005 ## CloseGap 0 17 10 / 336 = 0.02976 0.00304 ## HealGap 0 55 20 / 266 = 0.07519 0.00099 ## MoveGap 0 0 0 / 191 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 203 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 806 = 0.00124 0.00014 ## InsertFragment 0 0 0 / 185 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 243 = 0.00000 0.00000 ## CrossOver 3 4 1 / 127 = 0.00787 0.00002 ## CrossAndInsert 4 0 0 / 177 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 198 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 152 next to short segment # Closing gap before 36 next to short segment # generation 52: best score out of 20: T0287.try7-al8 218.05690 cost/residue, 177 clashes 0.16890 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 116 59 / 290 = 0.20345 0.00520 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 1 2 / 85 = 0.02353 0.00073 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 16 4 / 46 = 0.08696 0.00076 ## TweakPhiSegment 0 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 1 70 45 / 199 = 0.22613 0.00436 ## TweakPsiSegment 0 26 10 / 53 = 0.18868 0.00048 ## TweakPsiPhiSubtree 16 46 21 / 141 = 0.14894 0.00387 ## TweakPsiPhiSegment 18 81 29 / 209 = 0.13876 0.00424 ## TweakHbondSubtree 2 37 17 / 161 = 0.10559 0.00377 ## TweakHbondSegment 1 87 45 / 266 = 0.16917 0.00552 ## TweakMultimer 60 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 40 20 / 73 = 0.27397 0.00125 ## OneRotamer 0 88 55 / 409 = 0.13447 0.01239 ## ClashingRotamer 0 0 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 87 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 211 = 0.00474 0.00005 ## CloseGap 0 17 10 / 341 = 0.02933 0.00300 ## HealGap 0 55 20 / 268 = 0.07463 0.00099 ## MoveGap 0 0 0 / 193 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 203 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 820 = 0.00122 0.00014 ## InsertFragment 0 0 0 / 188 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 247 = 0.00000 0.00000 ## CrossOver 3 4 1 / 128 = 0.00781 0.00002 ## CrossAndInsert 4 0 0 / 179 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 203 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 53: best score out of 20: T0287.try7-al8 218.05115 cost/residue, 178 clashes 0.16890 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 116 59 / 299 = 0.19732 0.00505 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 16 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 43 = 0.00000 0.00000 ## OptSegment 0 1 2 / 86 = 0.02326 0.00072 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 16 4 / 46 = 0.08696 0.00076 ## TweakPhiSegment 0 7 1 / 12 = 0.08333 0.00021 ## TweakPsiSubtree 1 72 46 / 205 = 0.22439 0.00424 ## TweakPsiSegment 0 26 10 / 53 = 0.18868 0.00048 ## TweakPsiPhiSubtree 17 47 21 / 143 = 0.14685 0.00382 ## TweakPsiPhiSegment 19 83 30 / 213 = 0.14085 0.00448 ## TweakHbondSubtree 2 38 17 / 168 = 0.10119 0.00361 ## TweakHbondSegment 1 89 47 / 276 = 0.17029 0.00539 ## TweakMultimer 62 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 42 21 / 75 = 0.28000 0.00125 ## OneRotamer 0 89 56 / 426 = 0.13146 0.01206 ## ClashingRotamer 0 0 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 87 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 213 = 0.00469 0.00005 ## CloseGap 0 17 10 / 343 = 0.02915 0.00298 ## HealGap 0 55 21 / 274 = 0.07664 0.00100 ## MoveGap 0 0 0 / 196 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 206 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 831 = 0.00120 0.00013 ## InsertFragment 0 0 0 / 190 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 250 = 0.00000 0.00000 ## CrossOver 3 4 1 / 128 = 0.00781 0.00002 ## CrossAndInsert 4 0 0 / 180 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 207 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 33 next to short segment # generation 54: best score out of 20: T0287.try7-al8 217.98662 cost/residue, 177 clashes 0.16890 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 117 60 / 304 = 0.19737 0.00521 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 43 = 0.00000 0.00000 ## OptSegment 0 1 2 / 87 = 0.02299 0.00071 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 16 4 / 47 = 0.08511 0.00075 ## TweakPhiSegment 0 9 2 / 17 = 0.11765 0.00216 ## TweakPsiSubtree 1 73 47 / 208 = 0.22596 0.00426 ## TweakPsiSegment 0 26 10 / 53 = 0.18868 0.00048 ## TweakPsiPhiSubtree 18 47 21 / 146 = 0.14384 0.00374 ## TweakPsiPhiSegment 21 85 30 / 221 = 0.13575 0.00431 ## TweakHbondSubtree 2 38 17 / 170 = 0.10000 0.00357 ## TweakHbondSegment 1 92 49 / 284 = 0.17254 0.00552 ## TweakMultimer 62 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 42 21 / 75 = 0.28000 0.00125 ## OneRotamer 0 93 59 / 442 = 0.13348 0.01189 ## ClashingRotamer 0 0 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 88 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 215 = 0.00465 0.00005 ## CloseGap 0 17 10 / 346 = 0.02890 0.00296 ## HealGap 0 56 22 / 281 = 0.07829 0.00124 ## MoveGap 0 0 0 / 199 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 212 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 844 = 0.00118 0.00013 ## InsertFragment 0 0 0 / 192 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 254 = 0.00000 0.00000 ## CrossOver 3 4 1 / 129 = 0.00775 0.00002 ## CrossAndInsert 4 0 0 / 182 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 209 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 55: best score out of 20: T0287.try7-al8 217.86765 cost/residue, 175 clashes 0.16890 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 119 61 / 311 = 0.19614 0.00512 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 44 = 0.00000 0.00000 ## OptSegment 0 1 2 / 88 = 0.02273 0.00070 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 16 4 / 47 = 0.08511 0.00075 ## TweakPhiSegment 0 16 4 / 26 = 0.15385 0.00253 ## TweakPsiSubtree 1 73 47 / 211 = 0.22275 0.00420 ## TweakPsiSegment 0 26 10 / 53 = 0.18868 0.00048 ## TweakPsiPhiSubtree 18 48 22 / 149 = 0.14765 0.00378 ## TweakPsiPhiSegment 22 85 30 / 225 = 0.13333 0.00424 ## TweakHbondSubtree 3 38 17 / 176 = 0.09659 0.00345 ## TweakHbondSegment 1 92 49 / 290 = 0.16897 0.00541 ## TweakMultimer 63 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 42 21 / 78 = 0.26923 0.00120 ## OneRotamer 0 96 63 / 458 = 0.13755 0.01220 ## ClashingRotamer 0 0 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 88 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 217 = 0.00461 0.00005 ## CloseGap 0 17 10 / 348 = 0.02874 0.00294 ## HealGap 0 57 23 / 292 = 0.07877 0.00126 ## MoveGap 0 0 0 / 201 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 214 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 854 = 0.00117 0.00013 ## InsertFragment 0 0 0 / 196 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 255 = 0.00000 0.00000 ## CrossOver 3 4 1 / 129 = 0.00775 0.00002 ## CrossAndInsert 4 0 0 / 186 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 211 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 56: best score out of 20: T0287.try7-al8 217.81055 cost/residue, 175 clashes 0.16942 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 120 61 / 319 = 0.19122 0.00499 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 44 = 0.00000 0.00000 ## OptSegment 0 1 2 / 88 = 0.02273 0.00070 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 17 4 / 49 = 0.08163 0.00072 ## TweakPhiSegment 0 18 5 / 31 = 0.16129 0.00289 ## TweakPsiSubtree 1 75 49 / 217 = 0.22581 0.00419 ## TweakPsiSegment 0 26 10 / 53 = 0.18868 0.00048 ## TweakPsiPhiSubtree 18 50 24 / 152 = 0.15789 0.00408 ## TweakPsiPhiSegment 24 87 31 / 229 = 0.13537 0.00422 ## TweakHbondSubtree 3 39 17 / 181 = 0.09392 0.00336 ## TweakHbondSegment 1 96 53 / 300 = 0.17667 0.00578 ## TweakMultimer 63 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 42 21 / 79 = 0.26582 0.00119 ## OneRotamer 0 96 63 / 469 = 0.13433 0.01192 ## ClashingRotamer 0 0 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 89 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 217 = 0.00461 0.00005 ## CloseGap 0 17 10 / 350 = 0.02857 0.00292 ## HealGap 0 57 23 / 293 = 0.07850 0.00126 ## MoveGap 0 0 0 / 207 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 217 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 866 = 0.00115 0.00013 ## InsertFragment 0 0 0 / 198 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 261 = 0.00000 0.00000 ## CrossOver 3 4 1 / 131 = 0.00763 0.00002 ## CrossAndInsert 4 0 0 / 192 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 215 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 57: best score out of 20: T0287.try7-al8 217.79280 cost/residue, 173 clashes 0.17100 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 121 61 / 326 = 0.18712 0.00488 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 17 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 1 2 / 89 = 0.02247 0.00070 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 17 4 / 50 = 0.08000 0.00070 ## TweakPhiSegment 0 19 5 / 34 = 0.14706 0.00263 ## TweakPsiSubtree 1 75 49 / 220 = 0.22273 0.00413 ## TweakPsiSegment 0 26 10 / 53 = 0.18868 0.00048 ## TweakPsiPhiSubtree 18 51 26 / 158 = 0.16456 0.00464 ## TweakPsiPhiSegment 24 87 31 / 229 = 0.13537 0.00422 ## TweakHbondSubtree 3 40 18 / 186 = 0.09677 0.00328 ## TweakHbondSegment 1 100 54 / 312 = 0.17308 0.00586 ## TweakMultimer 64 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 44 23 / 85 = 0.27059 0.00126 ## OneRotamer 0 98 65 / 483 = 0.13458 0.01183 ## ClashingRotamer 0 0 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 91 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 219 = 0.00457 0.00005 ## CloseGap 0 17 10 / 351 = 0.02849 0.00291 ## HealGap 0 57 23 / 300 = 0.07667 0.00123 ## MoveGap 0 0 0 / 208 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 223 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 874 = 0.00114 0.00013 ## InsertFragment 0 0 0 / 201 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 262 = 0.00000 0.00000 ## CrossOver 3 5 1 / 134 = 0.00746 0.00002 ## CrossAndInsert 4 0 0 / 195 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 217 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 58: best score out of 20: T0287.try7-al8 217.74844 cost/residue, 173 clashes 0.17100 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 122 61 / 329 = 0.18541 0.00484 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 18 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 2 / 90 = 0.02222 0.00069 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 18 4 / 51 = 0.07843 0.00069 ## TweakPhiSegment 0 21 5 / 38 = 0.13158 0.00236 ## TweakPsiSubtree 1 76 50 / 223 = 0.22422 0.00408 ## TweakPsiSegment 0 26 10 / 53 = 0.18868 0.00048 ## TweakPsiPhiSubtree 18 52 27 / 165 = 0.16364 0.00471 ## TweakPsiPhiSegment 25 88 31 / 234 = 0.13248 0.00413 ## TweakHbondSubtree 3 40 18 / 193 = 0.09326 0.00316 ## TweakHbondSegment 1 102 55 / 322 = 0.17081 0.00570 ## TweakMultimer 70 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 45 23 / 88 = 0.26136 0.00122 ## OneRotamer 0 101 66 / 495 = 0.13333 0.01158 ## ClashingRotamer 0 0 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 92 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 222 = 0.00450 0.00005 ## CloseGap 0 17 10 / 354 = 0.02825 0.00289 ## HealGap 0 58 23 / 306 = 0.07516 0.00120 ## MoveGap 0 0 0 / 212 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 226 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 881 = 0.00114 0.00013 ## InsertFragment 0 0 0 / 206 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 267 = 0.00000 0.00000 ## CrossOver 3 5 1 / 134 = 0.00746 0.00002 ## CrossAndInsert 4 0 0 / 198 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 219 = 0.00000 0.00000 # Closing gap before 99 next to short segment # Closing gap before 36 next to short segment # generation 59: best score out of 20: T0287.try7-al8 217.69911 cost/residue, 172 clashes 0.17100 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 123 62 / 334 = 0.18563 0.00499 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 18 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 2 / 90 = 0.02222 0.00069 ## OptAllSegments 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 18 4 / 53 = 0.07547 0.00066 ## TweakPhiSegment 0 22 6 / 39 = 0.15385 0.00230 ## TweakPsiSubtree 1 78 50 / 230 = 0.21739 0.00395 ## TweakPsiSegment 0 26 10 / 53 = 0.18868 0.00048 ## TweakPsiPhiSubtree 20 53 28 / 171 = 0.16374 0.00458 ## TweakPsiPhiSegment 26 89 32 / 237 = 0.13502 0.00408 ## TweakHbondSubtree 3 40 18 / 198 = 0.09091 0.00308 ## TweakHbondSegment 2 106 57 / 333 = 0.17117 0.00558 ## TweakMultimer 72 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 45 23 / 91 = 0.25275 0.00118 ## OneRotamer 0 103 68 / 516 = 0.13178 0.01123 ## ClashingRotamer 0 0 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 92 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 225 = 0.00444 0.00005 ## CloseGap 0 17 10 / 356 = 0.02809 0.00287 ## HealGap 0 59 24 / 308 = 0.07792 0.00143 ## MoveGap 0 0 0 / 215 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 228 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 893 = 0.00112 0.00012 ## InsertFragment 0 0 0 / 210 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 269 = 0.00000 0.00000 ## CrossOver 3 6 2 / 136 = 0.01471 0.00004 ## CrossAndInsert 4 0 0 / 198 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 221 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 60: best score out of 20: T0287.try7-al8 217.66080 cost/residue, 170 clashes 0.17174 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 125 63 / 344 = 0.18314 0.00486 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 18 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 47 = 0.00000 0.00000 ## OptSegment 0 1 2 / 91 = 0.02198 0.00068 ## OptAllSegments 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 18 4 / 54 = 0.07407 0.00065 ## TweakPhiSegment 0 23 7 / 42 = 0.16667 0.00215 ## TweakPsiSubtree 1 78 50 / 234 = 0.21368 0.00389 ## TweakPsiSegment 0 26 11 / 54 = 0.20370 0.00056 ## TweakPsiPhiSubtree 21 58 30 / 185 = 0.16216 0.00453 ## TweakPsiPhiSegment 26 90 32 / 240 = 0.13333 0.00403 ## TweakHbondSubtree 3 40 18 / 198 = 0.09091 0.00308 ## TweakHbondSegment 2 109 60 / 342 = 0.17544 0.00555 ## TweakMultimer 74 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 45 23 / 91 = 0.25275 0.00118 ## OneRotamer 0 105 69 / 527 = 0.13093 0.01103 ## ClashingRotamer 0 0 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 93 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 229 = 0.00437 0.00004 ## CloseGap 0 17 10 / 359 = 0.02786 0.00285 ## HealGap 0 59 24 / 315 = 0.07619 0.00140 ## MoveGap 0 0 0 / 219 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 231 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 902 = 0.00111 0.00012 ## InsertFragment 0 0 0 / 213 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 272 = 0.00000 0.00000 ## CrossOver 3 6 2 / 137 = 0.01460 0.00004 ## CrossAndInsert 4 0 0 / 199 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 223 = 0.00000 0.00000 # generation 61: best score out of 20: T0287.try7-al8 217.62016 cost/residue, 173 clashes 0.17189 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 128 63 / 351 = 0.17949 0.00476 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 19 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 2 / 93 = 0.02151 0.00067 ## OptAllSegments 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 5 / 56 = 0.08929 0.00064 ## TweakPhiSegment 0 23 8 / 45 = 0.17778 0.00255 ## TweakPsiSubtree 1 79 51 / 237 = 0.21519 0.00384 ## TweakPsiSegment 0 27 11 / 55 = 0.20000 0.00055 ## TweakPsiPhiSubtree 22 59 31 / 188 = 0.16489 0.00460 ## TweakPsiPhiSegment 27 92 32 / 244 = 0.13115 0.00396 ## TweakHbondSubtree 3 42 18 / 205 = 0.08780 0.00297 ## TweakHbondSegment 2 112 62 / 349 = 0.17765 0.00565 ## TweakMultimer 76 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 45 23 / 93 = 0.24731 0.00115 ## OneRotamer 0 106 70 / 542 = 0.12915 0.01081 ## ClashingRotamer 0 0 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 93 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 232 = 0.00431 0.00004 ## CloseGap 0 17 10 / 360 = 0.02778 0.00284 ## HealGap 0 59 24 / 326 = 0.07362 0.00135 ## MoveGap 0 0 0 / 224 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 233 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 911 = 0.00110 0.00012 ## InsertFragment 0 0 0 / 214 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 273 = 0.00000 0.00000 ## CrossOver 3 6 2 / 140 = 0.01429 0.00004 ## CrossAndInsert 4 0 0 / 201 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 224 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 62: best score out of 20: T0287.try7-al8 217.56268 cost/residue, 165 clashes 0.17174 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 130 66 / 357 = 0.18487 0.00477 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 3 0 / 19 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 2 / 93 = 0.02151 0.00067 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 5 / 57 = 0.08772 0.00063 ## TweakPhiSegment 0 24 8 / 50 = 0.16000 0.00229 ## TweakPsiSubtree 1 79 52 / 240 = 0.21667 0.00382 ## TweakPsiSegment 0 27 11 / 56 = 0.19643 0.00054 ## TweakPsiPhiSubtree 23 61 32 / 197 = 0.16244 0.00455 ## TweakPsiPhiSegment 27 93 33 / 248 = 0.13306 0.00390 ## TweakHbondSubtree 3 42 18 / 209 = 0.08612 0.00291 ## TweakHbondSegment 2 116 65 / 358 = 0.18156 0.00586 ## TweakMultimer 76 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 46 23 / 96 = 0.23958 0.00112 ## OneRotamer 0 109 71 / 555 = 0.12793 0.01079 ## ClashingRotamer 0 0 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 93 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 233 = 0.00429 0.00004 ## CloseGap 0 17 10 / 364 = 0.02747 0.00281 ## HealGap 0 59 24 / 332 = 0.07229 0.00133 ## MoveGap 0 0 0 / 226 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 235 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 922 = 0.00108 0.00012 ## InsertFragment 0 0 0 / 218 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 275 = 0.00000 0.00000 ## CrossOver 3 6 2 / 141 = 0.01418 0.00004 ## CrossAndInsert 4 0 0 / 204 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 227 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 97 next to short segment # generation 63: best score out of 20: T0287.try7-al8 217.55077 cost/residue, 172 clashes 0.16534 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 133 68 / 362 = 0.18785 0.00497 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 1 4 1 / 20 = 0.05000 0.00474 ## OptSubtree 1 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 1 2 / 93 = 0.02151 0.00067 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 5 / 58 = 0.08621 0.00062 ## TweakPhiSegment 0 26 9 / 56 = 0.16071 0.00208 ## TweakPsiSubtree 1 80 52 / 242 = 0.21488 0.00379 ## TweakPsiSegment 0 27 11 / 57 = 0.19298 0.00053 ## TweakPsiPhiSubtree 23 62 35 / 213 = 0.16432 0.00434 ## TweakPsiPhiSegment 27 94 34 / 250 = 0.13600 0.00400 ## TweakHbondSubtree 3 42 18 / 215 = 0.08372 0.00283 ## TweakHbondSegment 2 122 69 / 374 = 0.18449 0.00580 ## TweakMultimer 80 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 46 23 / 98 = 0.23469 0.00109 ## OneRotamer 0 110 73 / 566 = 0.12898 0.01071 ## ClashingRotamer 0 0 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 94 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 233 = 0.00429 0.00004 ## CloseGap 0 17 10 / 366 = 0.02732 0.00279 ## HealGap 0 59 24 / 334 = 0.07186 0.00132 ## MoveGap 0 0 0 / 230 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 237 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 928 = 0.00108 0.00012 ## InsertFragment 0 0 0 / 220 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 281 = 0.00000 0.00000 ## CrossOver 3 6 2 / 143 = 0.01399 0.00003 ## CrossAndInsert 4 0 0 / 205 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 228 = 0.00000 0.00000 # generation 64: best score out of 20: T0287.try7-al8 217.48091 cost/residue, 168 clashes 0.17386 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 134 68 / 366 = 0.18579 0.00492 ## JiggleSubtree 0 1 0 / 11 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 51 = 0.03922 0.00254 ## OptSubtree 1 0 0 / 51 = 0.00000 0.00000 ## OptSegment 0 1 2 / 95 = 0.02105 0.00065 ## OptAllSegments 0 0 0 / 22 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 5 / 58 = 0.08621 0.00062 ## TweakPhiSegment 0 27 9 / 59 = 0.15254 0.00198 ## TweakPsiSubtree 1 81 54 / 245 = 0.22041 0.00374 ## TweakPsiSegment 0 28 12 / 58 = 0.20690 0.00054 ## TweakPsiPhiSubtree 23 62 35 / 215 = 0.16279 0.00430 ## TweakPsiPhiSegment 27 95 35 / 253 = 0.13834 0.00404 ## TweakHbondSubtree 3 42 18 / 215 = 0.08372 0.00283 ## TweakHbondSegment 2 126 70 / 381 = 0.18373 0.00596 ## TweakMultimer 80 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 46 23 / 98 = 0.23469 0.00109 ## OneRotamer 0 111 74 / 572 = 0.12937 0.01063 ## ClashingRotamer 0 0 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 94 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 238 = 0.00420 0.00004 ## CloseGap 0 17 10 / 371 = 0.02695 0.00276 ## HealGap 0 59 24 / 338 = 0.07101 0.00130 ## MoveGap 0 0 0 / 231 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 240 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 935 = 0.00107 0.00012 ## InsertFragment 0 0 0 / 222 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 283 = 0.00000 0.00000 ## CrossOver 3 6 2 / 145 = 0.01379 0.00003 ## CrossAndInsert 4 0 0 / 206 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 230 = 0.00000 0.00000 # Closing gap before 23 # Closing gap before 36 next to short segment # generation 65: best score out of 20: T0287.try7-al8 217.45700 cost/residue, 168 clashes 0.17376 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 135 69 / 370 = 0.18649 0.00497 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 54 = 0.03704 0.00240 ## OptSubtree 1 0 0 / 53 = 0.00000 0.00000 ## OptSegment 0 1 2 / 96 = 0.02083 0.00064 ## OptAllSegments 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 5 / 58 = 0.08621 0.00062 ## TweakPhiSegment 0 29 9 / 62 = 0.14516 0.00188 ## TweakPsiSubtree 1 83 54 / 250 = 0.21600 0.00367 ## TweakPsiSegment 0 28 12 / 59 = 0.20339 0.00054 ## TweakPsiPhiSubtree 25 62 35 / 220 = 0.15909 0.00420 ## TweakPsiPhiSegment 28 96 36 / 257 = 0.14008 0.00400 ## TweakHbondSubtree 3 42 18 / 218 = 0.08257 0.00279 ## TweakHbondSegment 2 128 73 / 390 = 0.18718 0.00591 ## TweakMultimer 80 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 48 24 / 101 = 0.23762 0.00110 ## OneRotamer 0 113 74 / 588 = 0.12585 0.01034 ## ClashingRotamer 0 0 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 242 = 0.00413 0.00004 ## CloseGap 0 17 10 / 375 = 0.02667 0.00273 ## HealGap 0 61 25 / 344 = 0.07267 0.00135 ## MoveGap 0 0 0 / 232 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 245 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 940 = 0.00106 0.00012 ## InsertFragment 0 0 0 / 224 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 286 = 0.00000 0.00000 ## CrossOver 3 6 2 / 148 = 0.01351 0.00003 ## CrossAndInsert 4 0 0 / 207 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 232 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 66: best score out of 20: T0287.try7-al8 217.43376 cost/residue, 170 clashes 0.17201 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 136 69 / 383 = 0.18016 0.00480 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 61 = 0.03279 0.00213 ## OptSubtree 1 0 0 / 53 = 0.00000 0.00000 ## OptSegment 0 1 2 / 96 = 0.02083 0.00064 ## OptAllSegments 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 19 5 / 59 = 0.08475 0.00061 ## TweakPhiSegment 0 32 10 / 66 = 0.15152 0.00192 ## TweakPsiSubtree 1 86 55 / 253 = 0.21739 0.00372 ## TweakPsiSegment 0 30 12 / 61 = 0.19672 0.00052 ## TweakPsiPhiSubtree 25 62 35 / 222 = 0.15766 0.00416 ## TweakPsiPhiSegment 29 96 36 / 260 = 0.13846 0.00395 ## TweakHbondSubtree 3 43 18 / 222 = 0.08108 0.00274 ## TweakHbondSegment 2 128 74 / 394 = 0.18782 0.00586 ## TweakMultimer 83 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 51 26 / 107 = 0.24299 0.00107 ## OneRotamer 0 114 74 / 601 = 0.12313 0.01012 ## ClashingRotamer 0 0 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 242 = 0.00413 0.00004 ## CloseGap 0 17 10 / 378 = 0.02646 0.00271 ## HealGap 0 61 25 / 347 = 0.07205 0.00134 ## MoveGap 0 0 0 / 234 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 248 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 953 = 0.00105 0.00012 ## InsertFragment 0 0 0 / 230 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 287 = 0.00000 0.00000 ## CrossOver 3 6 2 / 148 = 0.01351 0.00003 ## CrossAndInsert 4 0 0 / 208 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 236 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 67: best score out of 20: T0287.try7-al8 217.36142 cost/residue, 167 clashes 0.17376 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 137 70 / 393 = 0.17812 0.00469 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 68 = 0.02941 0.00191 ## OptSubtree 1 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 1 2 / 96 = 0.02083 0.00064 ## OptAllSegments 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 62 = 0.08065 0.00058 ## TweakPhiSegment 0 33 11 / 70 = 0.15714 0.00181 ## TweakPsiSubtree 1 86 57 / 259 = 0.22008 0.00364 ## TweakPsiSegment 1 31 12 / 62 = 0.19355 0.00051 ## TweakPsiPhiSubtree 27 64 36 / 226 = 0.15929 0.00435 ## TweakPsiPhiSegment 31 97 37 / 265 = 0.13962 0.00400 ## TweakHbondSubtree 3 43 18 / 222 = 0.08108 0.00274 ## TweakHbondSegment 2 129 74 / 407 = 0.18182 0.00567 ## TweakMultimer 86 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 54 27 / 111 = 0.24324 0.00104 ## OneRotamer 0 115 75 / 614 = 0.12215 0.01006 ## ClashingRotamer 0 0 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 244 = 0.00410 0.00004 ## CloseGap 0 17 10 / 382 = 0.02618 0.00268 ## HealGap 0 61 25 / 349 = 0.07163 0.00133 ## MoveGap 0 0 0 / 235 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 253 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 964 = 0.00104 0.00012 ## InsertFragment 0 0 0 / 231 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 287 = 0.00000 0.00000 ## CrossOver 3 6 2 / 149 = 0.01342 0.00003 ## CrossAndInsert 5 0 0 / 208 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 236 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 68: best score out of 20: T0287.try7-al8 217.31303 cost/residue, 168 clashes 0.17615 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 138 70 / 399 = 0.17544 0.00462 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 70 = 0.02857 0.00185 ## OptSubtree 1 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 1 2 / 98 = 0.02041 0.00063 ## OptAllSegments 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 62 = 0.08065 0.00058 ## TweakPhiSegment 0 35 11 / 75 = 0.14667 0.00169 ## TweakPsiSubtree 1 87 58 / 263 = 0.22053 0.00362 ## TweakPsiSegment 1 31 12 / 62 = 0.19355 0.00051 ## TweakPsiPhiSubtree 27 65 36 / 236 = 0.15254 0.00417 ## TweakPsiPhiSegment 33 100 39 / 273 = 0.14286 0.00444 ## TweakHbondSubtree 3 43 18 / 223 = 0.08072 0.00273 ## TweakHbondSegment 2 133 77 / 420 = 0.18333 0.00576 ## TweakMultimer 86 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 9 54 27 / 111 = 0.24324 0.00104 ## OneRotamer 0 117 75 / 624 = 0.12019 0.00990 ## ClashingRotamer 0 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 246 = 0.00407 0.00004 ## CloseGap 0 17 10 / 388 = 0.02577 0.00264 ## HealGap 0 62 26 / 356 = 0.07303 0.00144 ## MoveGap 0 0 0 / 235 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 253 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 976 = 0.00102 0.00011 ## InsertFragment 0 0 0 / 232 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 289 = 0.00000 0.00000 ## CrossOver 3 6 2 / 150 = 0.01333 0.00003 ## CrossAndInsert 5 0 0 / 212 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 238 = 0.00000 0.00000 # Closing gap before 163 # Closing gap before 23 without wiggling. # generation 69: best score out of 20: T0287.try7-al8 217.31281 cost/residue, 168 clashes 0.17615 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 141 72 / 405 = 0.17778 0.00473 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 74 = 0.02703 0.00175 ## OptSubtree 1 0 0 / 55 = 0.00000 0.00000 ## OptSegment 0 1 2 / 98 = 0.02041 0.00063 ## OptAllSegments 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 63 = 0.07937 0.00057 ## TweakPhiSegment 0 36 11 / 81 = 0.13580 0.00156 ## TweakPsiSubtree 1 89 60 / 268 = 0.22388 0.00359 ## TweakPsiSegment 1 31 12 / 62 = 0.19355 0.00051 ## TweakPsiPhiSubtree 29 65 36 / 243 = 0.14815 0.00405 ## TweakPsiPhiSegment 34 104 41 / 286 = 0.14336 0.00430 ## TweakHbondSubtree 3 43 18 / 223 = 0.08072 0.00273 ## TweakHbondSegment 2 134 78 / 426 = 0.18310 0.00568 ## TweakMultimer 86 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 54 27 / 111 = 0.24324 0.00104 ## OneRotamer 0 119 75 / 639 = 0.11737 0.00967 ## ClashingRotamer 0 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 247 = 0.00405 0.00004 ## CloseGap 0 17 10 / 391 = 0.02558 0.00262 ## HealGap 0 62 26 / 365 = 0.07123 0.00140 ## MoveGap 0 0 0 / 238 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 254 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 985 = 0.00102 0.00011 ## InsertFragment 0 0 0 / 237 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 289 = 0.00000 0.00000 ## CrossOver 3 6 2 / 150 = 0.01333 0.00003 ## CrossAndInsert 5 0 0 / 215 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 241 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Healing gap before (T0287)T34 residual break only 9.9720657e-02 # Closing gap before 110 without wiggling. # generation 70: best score out of 20: T0287.try7-al8 217.28256 cost/residue, 168 clashes 0.17615 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 144 74 / 411 = 0.18005 0.00476 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 78 = 0.02564 0.00166 ## OptSubtree 1 0 0 / 58 = 0.00000 0.00000 ## OptSegment 0 1 2 / 98 = 0.02041 0.00063 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 63 = 0.07937 0.00057 ## TweakPhiSegment 1 36 11 / 82 = 0.13415 0.00154 ## TweakPsiSubtree 1 91 61 / 274 = 0.22263 0.00355 ## TweakPsiSegment 1 31 12 / 62 = 0.19355 0.00051 ## TweakPsiPhiSubtree 29 66 37 / 250 = 0.14800 0.00399 ## TweakPsiPhiSegment 34 107 41 / 296 = 0.13851 0.00415 ## TweakHbondSubtree 3 43 18 / 225 = 0.08000 0.00271 ## TweakHbondSegment 2 137 78 / 436 = 0.17890 0.00555 ## TweakMultimer 87 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 54 27 / 112 = 0.24107 0.00104 ## OneRotamer 0 119 75 / 645 = 0.11628 0.00958 ## ClashingRotamer 0 0 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 97 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 251 = 0.00398 0.00004 ## CloseGap 0 17 10 / 396 = 0.02525 0.00258 ## HealGap 0 63 27 / 372 = 0.07258 0.00141 ## MoveGap 0 0 0 / 239 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 259 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 989 = 0.00101 0.00011 ## InsertFragment 0 0 0 / 241 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 293 = 0.00000 0.00000 ## CrossOver 3 6 2 / 151 = 0.01325 0.00003 ## CrossAndInsert 5 0 0 / 216 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 245 = 0.00000 0.00000 # Closing gap before 150 next to short segment # generation 71: best score out of 20: T0287.try7-al8 217.21281 cost/residue, 170 clashes 0.17234 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 144 74 / 417 = 0.17746 0.00469 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 81 = 0.02469 0.00160 ## OptSubtree 1 0 0 / 59 = 0.00000 0.00000 ## OptSegment 1 1 2 / 98 = 0.02041 0.00063 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 64 = 0.07812 0.00056 ## TweakPhiSegment 1 37 11 / 84 = 0.13095 0.00151 ## TweakPsiSubtree 1 92 61 / 278 = 0.21942 0.00350 ## TweakPsiSegment 1 32 14 / 64 = 0.21875 0.00050 ## TweakPsiPhiSubtree 30 67 37 / 258 = 0.14341 0.00387 ## TweakPsiPhiSegment 35 109 42 / 305 = 0.13770 0.00438 ## TweakHbondSubtree 3 43 18 / 227 = 0.07930 0.00268 ## TweakHbondSegment 2 141 80 / 447 = 0.17897 0.00546 ## TweakMultimer 87 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 56 27 / 115 = 0.23478 0.00101 ## OneRotamer 0 121 76 / 657 = 0.11568 0.00941 ## ClashingRotamer 0 0 0 / 57 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 98 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 252 = 0.00397 0.00004 ## CloseGap 0 18 11 / 397 = 0.02771 0.00270 ## HealGap 0 63 27 / 380 = 0.07105 0.00138 ## MoveGap 0 0 0 / 240 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 264 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 997 = 0.00100 0.00011 ## InsertFragment 0 0 0 / 243 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 293 = 0.00000 0.00000 ## CrossOver 3 6 2 / 153 = 0.01307 0.00003 ## CrossAndInsert 5 0 0 / 218 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 247 = 0.00000 0.00000 # Closing gap before 23 without wiggling. # Closing gap before 104 without wiggling. # Closing gap before 110 without wiggling. # Closing gap before 23 without wiggling. # Closing gap before 36 next to short segment # generation 72: best score out of 20: T0287.try7-al8 217.15822 cost/residue, 165 clashes 0.17756 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 144 74 / 423 = 0.17494 0.00463 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 83 = 0.02410 0.00156 ## OptSubtree 1 0 0 / 59 = 0.00000 0.00000 ## OptSegment 1 1 2 / 101 = 0.01980 0.00061 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 64 = 0.07812 0.00056 ## TweakPhiSegment 1 37 11 / 85 = 0.12941 0.00149 ## TweakPsiSubtree 1 94 62 / 283 = 0.21908 0.00345 ## TweakPsiSegment 1 33 14 / 66 = 0.21212 0.00049 ## TweakPsiPhiSubtree 31 69 38 / 264 = 0.14394 0.00388 ## TweakPsiPhiSegment 39 112 44 / 314 = 0.14013 0.00429 ## TweakHbondSubtree 3 44 18 / 228 = 0.07895 0.00267 ## TweakHbondSegment 2 144 82 / 455 = 0.18022 0.00560 ## TweakMultimer 88 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 57 27 / 117 = 0.23077 0.00099 ## OneRotamer 0 123 78 / 671 = 0.11624 0.00949 ## ClashingRotamer 0 0 0 / 58 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 98 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 255 = 0.00392 0.00004 ## CloseGap 0 19 11 / 404 = 0.02723 0.00265 ## HealGap 0 63 27 / 387 = 0.06977 0.00135 ## MoveGap 0 0 0 / 243 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 267 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1002 = 0.00100 0.00011 ## InsertFragment 0 0 0 / 244 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 294 = 0.00000 0.00000 ## CrossOver 3 6 2 / 154 = 0.01299 0.00003 ## CrossAndInsert 5 0 0 / 222 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 249 = 0.00000 0.00000 # generation 73: best score out of 20: T0287.try7-al8 217.03218 cost/residue, 163 clashes 0.17776 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 147 77 / 435 = 0.17701 0.00458 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 85 = 0.02353 0.00153 ## OptSubtree 1 0 0 / 60 = 0.00000 0.00000 ## OptSegment 1 1 2 / 102 = 0.01961 0.00061 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 64 = 0.07812 0.00056 ## TweakPhiSegment 1 38 11 / 86 = 0.12791 0.00147 ## TweakPsiSubtree 1 95 63 / 287 = 0.21951 0.00347 ## TweakPsiSegment 1 33 14 / 66 = 0.21212 0.00049 ## TweakPsiPhiSubtree 31 71 39 / 268 = 0.14552 0.00383 ## TweakPsiPhiSegment 39 116 49 / 324 = 0.15123 0.00474 ## TweakHbondSubtree 3 44 18 / 230 = 0.07826 0.00265 ## TweakHbondSegment 2 148 85 / 465 = 0.18280 0.00556 ## TweakMultimer 90 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 11 57 27 / 118 = 0.22881 0.00098 ## OneRotamer 0 125 80 / 680 = 0.11765 0.00944 ## ClashingRotamer 0 0 0 / 58 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 98 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 258 = 0.00388 0.00004 ## CloseGap 0 19 11 / 407 = 0.02703 0.00263 ## HealGap 0 63 27 / 395 = 0.06835 0.00133 ## MoveGap 0 0 0 / 245 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 269 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1010 = 0.00099 0.00011 ## InsertFragment 0 0 0 / 247 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 298 = 0.00000 0.00000 ## CrossOver 3 6 2 / 155 = 0.01290 0.00003 ## CrossAndInsert 5 0 0 / 224 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 253 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 74: best score out of 20: T0287.try7-al8 216.96768 cost/residue, 163 clashes 0.17776 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 148 78 / 442 = 0.17647 0.00465 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 87 = 0.02299 0.00149 ## OptSubtree 1 0 0 / 60 = 0.00000 0.00000 ## OptSegment 1 1 2 / 103 = 0.01942 0.00060 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 64 = 0.07812 0.00056 ## TweakPhiSegment 1 38 11 / 86 = 0.12791 0.00147 ## TweakPsiSubtree 1 97 63 / 291 = 0.21649 0.00342 ## TweakPsiSegment 1 34 15 / 68 = 0.22059 0.00057 ## TweakPsiPhiSubtree 33 71 39 / 273 = 0.14286 0.00376 ## TweakPsiPhiSegment 42 121 55 / 340 = 0.16176 0.00489 ## TweakHbondSubtree 3 44 18 / 230 = 0.07826 0.00265 ## TweakHbondSegment 2 150 86 / 475 = 0.18105 0.00546 ## TweakMultimer 94 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 12 58 28 / 121 = 0.23140 0.00098 ## OneRotamer 0 125 81 / 690 = 0.11739 0.00931 ## ClashingRotamer 0 0 0 / 58 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 99 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 261 = 0.00383 0.00004 ## CloseGap 0 19 11 / 409 = 0.02689 0.00262 ## HealGap 0 65 27 / 403 = 0.06700 0.00130 ## MoveGap 0 0 0 / 248 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 272 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1018 = 0.00098 0.00011 ## InsertFragment 0 0 0 / 249 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 301 = 0.00000 0.00000 ## CrossOver 3 6 2 / 156 = 0.01282 0.00003 ## CrossAndInsert 5 0 0 / 226 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 257 = 0.00000 0.00000 # Closing gap before 110 without wiggling. # generation 75: best score out of 20: T0287.try7-al8 216.89116 cost/residue, 162 clashes 0.17733 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 148 78 / 447 = 0.17450 0.00460 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 90 = 0.02222 0.00144 ## OptSubtree 1 0 0 / 61 = 0.00000 0.00000 ## OptSegment 1 1 2 / 103 = 0.01942 0.00060 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 65 = 0.07692 0.00055 ## TweakPhiSegment 1 39 11 / 87 = 0.12644 0.00146 ## TweakPsiSubtree 1 97 64 / 293 = 0.21843 0.00340 ## TweakPsiSegment 1 36 17 / 72 = 0.23611 0.00160 ## TweakPsiPhiSubtree 33 72 40 / 278 = 0.14388 0.00371 ## TweakPsiPhiSegment 47 127 57 / 356 = 0.16011 0.00494 ## TweakHbondSubtree 3 44 18 / 232 = 0.07759 0.00263 ## TweakHbondSegment 2 150 87 / 483 = 0.18012 0.00538 ## TweakMultimer 96 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 12 60 28 / 124 = 0.22581 0.00096 ## OneRotamer 0 126 82 / 699 = 0.11731 0.00923 ## ClashingRotamer 0 0 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 100 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 262 = 0.00382 0.00004 ## CloseGap 0 19 11 / 414 = 0.02657 0.00259 ## HealGap 0 65 27 / 407 = 0.06634 0.00129 ## MoveGap 0 0 0 / 251 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 277 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1029 = 0.00097 0.00011 ## InsertFragment 0 0 0 / 250 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 303 = 0.00000 0.00000 ## CrossOver 3 6 2 / 158 = 0.01266 0.00003 ## CrossAndInsert 6 0 0 / 226 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 260 = 0.00000 0.00000 # Closing gap before 152 next to short segment # generation 76: best score out of 20: T0287.try7-al8 216.87257 cost/residue, 161 clashes 0.17834 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 150 79 / 455 = 0.17363 0.00454 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 2 6 2 / 90 = 0.02222 0.00144 ## OptSubtree 1 0 0 / 62 = 0.00000 0.00000 ## OptSegment 1 1 2 / 103 = 0.01942 0.00060 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 65 = 0.07692 0.00055 ## TweakPhiSegment 1 40 11 / 92 = 0.11957 0.00138 ## TweakPsiSubtree 1 97 64 / 295 = 0.21695 0.00338 ## TweakPsiSegment 1 40 18 / 81 = 0.22222 0.00161 ## TweakPsiPhiSubtree 33 73 40 / 280 = 0.14286 0.00368 ## TweakPsiPhiSegment 52 128 58 / 363 = 0.15978 0.00497 ## TweakHbondSubtree 3 44 18 / 233 = 0.07725 0.00261 ## TweakHbondSegment 3 153 89 / 496 = 0.17944 0.00530 ## TweakMultimer 97 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 60 28 / 124 = 0.22581 0.00096 ## OneRotamer 0 129 85 / 711 = 0.11955 0.00928 ## ClashingRotamer 0 0 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 100 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 264 = 0.00379 0.00004 ## CloseGap 0 19 11 / 417 = 0.02638 0.00257 ## HealGap 0 65 27 / 412 = 0.06553 0.00127 ## MoveGap 0 0 0 / 253 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 279 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1044 = 0.00096 0.00011 ## InsertFragment 0 0 0 / 251 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 304 = 0.00000 0.00000 ## CrossOver 3 6 2 / 160 = 0.01250 0.00003 ## CrossAndInsert 6 0 0 / 228 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 265 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 33 next to short segment # Closing gap before 152 next to short segment # generation 77: best score out of 20: T0287.try7-al8 216.84787 cost/residue, 160 clashes 0.17834 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 152 79 / 461 = 0.17137 0.00448 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 3 7 3 / 94 = 0.03191 0.00164 ## OptSubtree 1 0 0 / 62 = 0.00000 0.00000 ## OptSegment 1 1 2 / 103 = 0.01942 0.00060 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 65 = 0.07692 0.00055 ## TweakPhiSegment 1 40 11 / 92 = 0.11957 0.00138 ## TweakPsiSubtree 1 97 66 / 299 = 0.22074 0.00334 ## TweakPsiSegment 1 45 23 / 92 = 0.25000 0.00169 ## TweakPsiPhiSubtree 35 74 41 / 286 = 0.14336 0.00390 ## TweakPsiPhiSegment 55 130 60 / 378 = 0.15873 0.00493 ## TweakHbondSubtree 3 44 18 / 234 = 0.07692 0.00260 ## TweakHbondSegment 3 155 91 / 506 = 0.17984 0.00528 ## TweakMultimer 99 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 60 28 / 124 = 0.22581 0.00096 ## OneRotamer 0 130 87 / 722 = 0.12050 0.00921 ## ClashingRotamer 0 0 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 100 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 264 = 0.00379 0.00004 ## CloseGap 0 20 12 / 421 = 0.02850 0.00270 ## HealGap 0 65 27 / 417 = 0.06475 0.00126 ## MoveGap 0 0 0 / 256 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 280 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1052 = 0.00095 0.00011 ## InsertFragment 0 0 0 / 253 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 305 = 0.00000 0.00000 ## CrossOver 3 6 2 / 161 = 0.01242 0.00003 ## CrossAndInsert 6 0 0 / 232 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 267 = 0.00000 0.00000 # Closing gap before 65 without wiggling. # Closing gap before 36 next to short segment # generation 78: best score out of 20: T0287.try7-al8 216.78996 cost/residue, 160 clashes 0.17785 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 153 81 / 468 = 0.17308 0.00451 ## JiggleSubtree 0 1 0 / 12 = 0.00000 0.00000 ## JiggleSegment 3 7 3 / 98 = 0.03061 0.00158 ## OptSubtree 1 0 0 / 62 = 0.00000 0.00000 ## OptSegment 1 1 2 / 103 = 0.01942 0.00060 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 20 5 / 66 = 0.07576 0.00054 ## TweakPhiSegment 1 40 11 / 94 = 0.11702 0.00135 ## TweakPsiSubtree 1 97 66 / 303 = 0.21782 0.00329 ## TweakPsiSegment 1 47 23 / 100 = 0.23000 0.00155 ## TweakPsiPhiSubtree 37 78 44 / 295 = 0.14915 0.00410 ## TweakPsiPhiSegment 58 132 61 / 389 = 0.15681 0.00480 ## TweakHbondSubtree 3 45 18 / 236 = 0.07627 0.00258 ## TweakHbondSegment 3 156 91 / 512 = 0.17773 0.00522 ## TweakMultimer 102 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 60 28 / 125 = 0.22400 0.00095 ## OneRotamer 0 131 87 / 731 = 0.11902 0.00910 ## ClashingRotamer 0 0 0 / 59 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 100 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 269 = 0.00372 0.00004 ## CloseGap 0 21 13 / 428 = 0.03037 0.00272 ## HealGap 0 66 28 / 422 = 0.06635 0.00132 ## MoveGap 0 0 0 / 257 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 281 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1056 = 0.00095 0.00011 ## InsertFragment 0 0 0 / 254 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 309 = 0.00000 0.00000 ## CrossOver 3 6 2 / 162 = 0.01235 0.00003 ## CrossAndInsert 6 0 0 / 235 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 269 = 0.00000 0.00000 # Closing gap before 163 without wiggling. # Closing gap before 65 without wiggling. # Closing gap before 23 next to short segment # Closing gap before 110 # generation 79: best score out of 20: T0287.try7-al8 216.74719 cost/residue, 160 clashes 0.17669 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 153 81 / 474 = 0.17089 0.00445 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 3 7 3 / 99 = 0.03030 0.00156 ## OptSubtree 1 0 0 / 63 = 0.00000 0.00000 ## OptSegment 1 1 2 / 104 = 0.01923 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 21 6 / 67 = 0.08955 0.00080 ## TweakPhiSegment 1 40 11 / 95 = 0.11579 0.00133 ## TweakPsiSubtree 1 97 67 / 304 = 0.22039 0.00328 ## TweakPsiSegment 1 50 24 / 109 = 0.22018 0.00172 ## TweakPsiPhiSubtree 38 80 46 / 301 = 0.15282 0.00431 ## TweakPsiPhiSegment 58 135 64 / 397 = 0.16121 0.00499 ## TweakHbondSubtree 3 45 18 / 238 = 0.07563 0.00256 ## TweakHbondSegment 3 157 92 / 521 = 0.17658 0.00519 ## TweakMultimer 105 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 61 29 / 126 = 0.23016 0.00104 ## OneRotamer 0 132 87 / 746 = 0.11662 0.00892 ## ClashingRotamer 0 0 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 100 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 269 = 0.00372 0.00004 ## CloseGap 0 22 14 / 435 = 0.03218 0.00277 ## HealGap 0 66 28 / 428 = 0.06542 0.00130 ## MoveGap 0 0 0 / 260 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 287 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1061 = 0.00094 0.00011 ## InsertFragment 0 0 0 / 256 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 310 = 0.00000 0.00000 ## CrossOver 3 6 2 / 163 = 0.01227 0.00003 ## CrossAndInsert 6 0 0 / 236 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 273 = 0.00000 0.00000 # Closing gap before 152 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 80: best score out of 20: T0287.try7-al8 216.72208 cost/residue, 160 clashes 0.17659 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 154 81 / 481 = 0.16840 0.00438 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 3 7 3 / 101 = 0.02970 0.00153 ## OptSubtree 1 0 0 / 63 = 0.00000 0.00000 ## OptSegment 1 1 2 / 104 = 0.01923 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 21 6 / 69 = 0.08696 0.00077 ## TweakPhiSegment 1 40 11 / 95 = 0.11579 0.00133 ## TweakPsiSubtree 1 100 68 / 310 = 0.21935 0.00324 ## TweakPsiSegment 1 52 25 / 115 = 0.21739 0.00189 ## TweakPsiPhiSubtree 38 85 49 / 309 = 0.15858 0.00432 ## TweakPsiPhiSegment 60 138 64 / 408 = 0.15686 0.00486 ## TweakHbondSubtree 3 45 18 / 240 = 0.07500 0.00254 ## TweakHbondSegment 3 159 93 / 529 = 0.17580 0.00516 ## TweakMultimer 107 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 14 61 30 / 127 = 0.23622 0.00104 ## OneRotamer 0 132 88 / 754 = 0.11671 0.00887 ## ClashingRotamer 0 0 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 104 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 270 = 0.00370 0.00004 ## CloseGap 0 22 14 / 441 = 0.03175 0.00274 ## HealGap 0 67 28 / 438 = 0.06393 0.00127 ## MoveGap 0 0 0 / 260 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 291 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1066 = 0.00094 0.00010 ## InsertFragment 0 0 0 / 257 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 312 = 0.00000 0.00000 ## CrossOver 3 6 2 / 163 = 0.01227 0.00003 ## CrossAndInsert 6 0 0 / 240 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 275 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 23 next to short segment # generation 81: best score out of 20: T0287.try7-al8 216.63371 cost/residue, 159 clashes 0.17735 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 156 83 / 488 = 0.17008 0.00442 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 4 7 3 / 104 = 0.02885 0.00149 ## OptSubtree 1 0 0 / 64 = 0.00000 0.00000 ## OptSegment 1 1 2 / 104 = 0.01923 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 24 8 / 77 = 0.10390 0.00079 ## TweakPhiSegment 1 40 11 / 96 = 0.11458 0.00132 ## TweakPsiSubtree 1 101 69 / 312 = 0.22115 0.00322 ## TweakPsiSegment 1 53 25 / 121 = 0.20661 0.00180 ## TweakPsiPhiSubtree 40 86 50 / 318 = 0.15723 0.00433 ## TweakPsiPhiSegment 63 140 65 / 414 = 0.15700 0.00504 ## TweakHbondSubtree 3 45 18 / 240 = 0.07500 0.00254 ## TweakHbondSegment 3 161 93 / 538 = 0.17286 0.00507 ## TweakMultimer 108 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 14 63 33 / 131 = 0.25191 0.00116 ## OneRotamer 0 133 88 / 763 = 0.11533 0.00877 ## ClashingRotamer 0 0 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 105 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 272 = 0.00368 0.00004 ## CloseGap 0 22 14 / 450 = 0.03111 0.00268 ## HealGap 0 67 28 / 442 = 0.06335 0.00126 ## MoveGap 0 0 0 / 263 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 294 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1072 = 0.00093 0.00010 ## InsertFragment 0 0 0 / 257 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 314 = 0.00000 0.00000 ## CrossOver 3 6 2 / 163 = 0.01227 0.00003 ## CrossAndInsert 6 0 0 / 242 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 277 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 23 next to short segment # Closing gap before 152 next to short segment # generation 82: best score out of 20: T0287.try7-al8 216.57391 cost/residue, 159 clashes 0.17735 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 160 86 / 497 = 0.17304 0.00442 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 4 7 3 / 107 = 0.02804 0.00144 ## OptSubtree 1 0 0 / 65 = 0.00000 0.00000 ## OptSegment 1 1 2 / 105 = 0.01905 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 26 9 / 81 = 0.11111 0.00082 ## TweakPhiSegment 1 40 11 / 96 = 0.11458 0.00132 ## TweakPsiSubtree 1 101 69 / 312 = 0.22115 0.00322 ## TweakPsiSegment 1 54 27 / 129 = 0.20930 0.00170 ## TweakPsiPhiSubtree 42 87 50 / 327 = 0.15291 0.00421 ## TweakPsiPhiSegment 64 142 65 / 425 = 0.15294 0.00491 ## TweakHbondSubtree 3 45 18 / 243 = 0.07407 0.00251 ## TweakHbondSegment 3 162 94 / 547 = 0.17185 0.00499 ## TweakMultimer 109 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 63 34 / 133 = 0.25564 0.00119 ## OneRotamer 0 136 91 / 771 = 0.11803 0.00893 ## ClashingRotamer 0 0 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 105 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 272 = 0.00368 0.00004 ## CloseGap 0 22 14 / 456 = 0.03070 0.00265 ## HealGap 0 67 28 / 443 = 0.06321 0.00126 ## MoveGap 0 0 0 / 266 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 297 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1083 = 0.00092 0.00010 ## InsertFragment 0 0 0 / 258 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 316 = 0.00000 0.00000 ## CrossOver 3 7 2 / 165 = 0.01212 0.00003 ## CrossAndInsert 6 0 0 / 244 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 278 = 0.00000 0.00000 # Closing gap before 23 next to short segment # Closing gap before 36 next to short segment # Closing gap before 154 next to short segment # generation 83: best score out of 20: T0287.try7-al8 216.51189 cost/residue, 157 clashes 0.17823 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 162 86 / 503 = 0.17097 0.00436 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 4 7 3 / 109 = 0.02752 0.00142 ## OptSubtree 1 0 0 / 66 = 0.00000 0.00000 ## OptSegment 1 1 2 / 105 = 0.01905 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 28 11 / 86 = 0.12791 0.00098 ## TweakPhiSegment 1 40 11 / 96 = 0.11458 0.00132 ## TweakPsiSubtree 1 101 69 / 315 = 0.21905 0.00319 ## TweakPsiSegment 1 55 27 / 131 = 0.20611 0.00167 ## TweakPsiPhiSubtree 43 87 50 / 331 = 0.15106 0.00416 ## TweakPsiPhiSegment 65 145 67 / 437 = 0.15332 0.00492 ## TweakHbondSubtree 3 45 18 / 245 = 0.07347 0.00249 ## TweakHbondSegment 3 163 94 / 553 = 0.16998 0.00494 ## TweakMultimer 110 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 66 37 / 137 = 0.27007 0.00130 ## OneRotamer 0 139 93 / 785 = 0.11847 0.00890 ## ClashingRotamer 0 0 0 / 61 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 107 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 274 = 0.00365 0.00004 ## CloseGap 0 23 15 / 463 = 0.03240 0.00269 ## HealGap 0 67 28 / 447 = 0.06264 0.00125 ## MoveGap 0 0 0 / 268 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 297 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 2 / 1093 = 0.00183 0.00022 ## InsertFragment 0 0 0 / 260 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 317 = 0.00000 0.00000 ## CrossOver 3 7 2 / 166 = 0.01205 0.00003 ## CrossAndInsert 6 0 0 / 244 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 282 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 23 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 84: best score out of 20: T0287.try7-al8 216.50464 cost/residue, 157 clashes 0.17788 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 164 87 / 510 = 0.17059 0.00431 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 4 7 3 / 110 = 0.02727 0.00140 ## OptSubtree 1 0 0 / 67 = 0.00000 0.00000 ## OptSegment 1 1 2 / 105 = 0.01905 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 30 12 / 91 = 0.13187 0.00094 ## TweakPhiSegment 1 40 11 / 96 = 0.11458 0.00132 ## TweakPsiSubtree 1 102 70 / 318 = 0.22013 0.00318 ## TweakPsiSegment 1 56 30 / 138 = 0.21739 0.00159 ## TweakPsiPhiSubtree 44 90 52 / 341 = 0.15249 0.00412 ## TweakPsiPhiSegment 65 146 68 / 443 = 0.15350 0.00487 ## TweakHbondSubtree 3 45 18 / 245 = 0.07347 0.00249 ## TweakHbondSegment 3 164 94 / 558 = 0.16846 0.00490 ## TweakMultimer 112 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 16 67 37 / 141 = 0.26241 0.00126 ## OneRotamer 0 141 94 / 794 = 0.11839 0.00881 ## ClashingRotamer 0 0 0 / 61 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 107 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 274 = 0.00365 0.00004 ## CloseGap 0 23 15 / 471 = 0.03185 0.00264 ## HealGap 0 68 29 / 451 = 0.06430 0.00125 ## MoveGap 0 0 0 / 270 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 301 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 2 / 1107 = 0.00181 0.00021 ## InsertFragment 0 0 0 / 263 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 318 = 0.00000 0.00000 ## CrossOver 3 7 2 / 167 = 0.01198 0.00003 ## CrossAndInsert 6 0 0 / 248 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 283 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 152 next to short segment # generation 85: best score out of 20: T0287.try7-al8 216.37579 cost/residue, 157 clashes 0.17694 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 165 88 / 514 = 0.17121 0.00428 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 4 7 3 / 113 = 0.02655 0.00137 ## OptSubtree 1 0 0 / 68 = 0.00000 0.00000 ## OptSegment 1 1 2 / 105 = 0.01905 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 32 14 / 96 = 0.14583 0.00317 ## TweakPhiSegment 2 40 11 / 96 = 0.11458 0.00132 ## TweakPsiSubtree 1 102 70 / 319 = 0.21944 0.00317 ## TweakPsiSegment 1 57 30 / 142 = 0.21127 0.00155 ## TweakPsiPhiSubtree 44 92 53 / 348 = 0.15230 0.00404 ## TweakPsiPhiSegment 67 152 72 / 456 = 0.15789 0.00482 ## TweakHbondSubtree 3 45 18 / 246 = 0.07317 0.00248 ## TweakHbondSegment 4 164 94 / 562 = 0.16726 0.00486 ## TweakMultimer 113 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 18 67 38 / 144 = 0.26389 0.00131 ## OneRotamer 0 144 96 / 810 = 0.11852 0.00872 ## ClashingRotamer 0 0 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 108 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 274 = 0.00365 0.00004 ## CloseGap 0 23 15 / 477 = 0.03145 0.00261 ## HealGap 0 69 29 / 455 = 0.06374 0.00124 ## MoveGap 0 0 0 / 272 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 303 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 56 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 2 / 1119 = 0.00179 0.00021 ## InsertFragment 0 0 0 / 265 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 320 = 0.00000 0.00000 ## CrossOver 3 7 2 / 168 = 0.01190 0.00003 ## CrossAndInsert 6 0 0 / 251 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 283 = 0.00000 0.00000 # Closing gap before 152 next to short segment # Closing gap before 36 next to short segment # Closing gap before 152 next to short segment # generation 86: best score out of 20: T0287.try7-al8 216.33720 cost/residue, 158 clashes 0.17702 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 166 89 / 519 = 0.17148 0.00423 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 4 7 3 / 114 = 0.02632 0.00136 ## OptSubtree 1 0 0 / 68 = 0.00000 0.00000 ## OptSegment 1 1 2 / 105 = 0.01905 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 38 16 / 111 = 0.14414 0.00345 ## TweakPhiSegment 2 40 11 / 97 = 0.11340 0.00131 ## TweakPsiSubtree 1 103 70 / 320 = 0.21875 0.00316 ## TweakPsiSegment 1 59 30 / 146 = 0.20548 0.00151 ## TweakPsiPhiSubtree 44 93 53 / 350 = 0.15143 0.00402 ## TweakPsiPhiSegment 69 153 72 / 463 = 0.15551 0.00475 ## TweakHbondSubtree 3 45 18 / 246 = 0.07317 0.00248 ## TweakHbondSegment 4 164 94 / 567 = 0.16578 0.00482 ## TweakMultimer 115 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 18 67 38 / 145 = 0.26207 0.00130 ## OneRotamer 0 147 96 / 820 = 0.11707 0.00862 ## ClashingRotamer 0 0 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 109 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 276 = 0.00362 0.00004 ## CloseGap 0 23 15 / 483 = 0.03106 0.00258 ## HealGap 0 69 29 / 459 = 0.06318 0.00123 ## MoveGap 0 0 0 / 274 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 304 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 56 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 2 / 1137 = 0.00176 0.00021 ## InsertFragment 0 0 0 / 267 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 324 = 0.00000 0.00000 ## CrossOver 3 7 2 / 170 = 0.01176 0.00003 ## CrossAndInsert 6 0 0 / 252 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 287 = 0.00000 0.00000 # Closing gap before 23 next to short segment # Closing gap before 36 next to short segment # Healing gap before (T0287)F164 residual break only 9.0371609e-02 # generation 87: best score out of 20: T0287.try7-al8 216.26343 cost/residue, 158 clashes 0.17857 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 166 89 / 525 = 0.16952 0.00419 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 4 7 3 / 115 = 0.02609 0.00134 ## OptSubtree 1 0 0 / 68 = 0.00000 0.00000 ## OptSegment 1 1 2 / 105 = 0.01905 0.00059 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 2 42 18 / 129 = 0.13953 0.00330 ## TweakPhiSegment 2 40 11 / 97 = 0.11340 0.00131 ## TweakPsiSubtree 1 103 70 / 322 = 0.21739 0.00314 ## TweakPsiSegment 1 60 33 / 152 = 0.21711 0.00156 ## TweakPsiPhiSubtree 46 95 54 / 354 = 0.15254 0.00400 ## TweakPsiPhiSegment 70 155 73 / 469 = 0.15565 0.00484 ## TweakHbondSubtree 3 45 19 / 247 = 0.07692 0.00253 ## TweakHbondSegment 4 164 95 / 572 = 0.16608 0.00479 ## TweakMultimer 116 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 20 68 39 / 150 = 0.26000 0.00129 ## OneRotamer 0 150 97 / 832 = 0.11659 0.00862 ## ClashingRotamer 0 0 0 / 64 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 109 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 277 = 0.00361 0.00004 ## CloseGap 0 23 15 / 487 = 0.03080 0.00256 ## HealGap 0 70 30 / 464 = 0.06466 0.00127 ## MoveGap 0 0 0 / 278 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 306 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 56 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1146 = 0.00175 0.00021 ## InsertFragment 0 0 0 / 269 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 327 = 0.00000 0.00000 ## CrossOver 3 8 3 / 171 = 0.01754 0.00119 ## CrossAndInsert 6 0 0 / 252 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 289 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 152 next to short segment # Closing gap before 36 next to short segment # generation 88: best score out of 20: T0287.try7-al8 216.26343 cost/residue, 158 clashes 0.17857 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 166 89 / 526 = 0.16920 0.00418 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 4 7 3 / 119 = 0.02521 0.00130 ## OptSubtree 1 0 0 / 68 = 0.00000 0.00000 ## OptSegment 1 1 2 / 107 = 0.01869 0.00058 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 3 45 19 / 136 = 0.13971 0.00317 ## TweakPhiSegment 2 40 11 / 98 = 0.11224 0.00129 ## TweakPsiSubtree 1 103 70 / 322 = 0.21739 0.00314 ## TweakPsiSegment 1 62 35 / 157 = 0.22293 0.00154 ## TweakPsiPhiSubtree 46 96 54 / 357 = 0.15126 0.00396 ## TweakPsiPhiSegment 70 156 74 / 473 = 0.15645 0.00483 ## TweakHbondSubtree 3 46 19 / 250 = 0.07600 0.00250 ## TweakHbondSegment 4 166 95 / 578 = 0.16436 0.00474 ## TweakMultimer 118 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 69 40 / 151 = 0.26490 0.00134 ## OneRotamer 0 151 97 / 837 = 0.11589 0.00857 ## ClashingRotamer 0 0 0 / 64 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 111 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 281 = 0.00356 0.00004 ## CloseGap 0 23 15 / 493 = 0.03043 0.00253 ## HealGap 0 71 30 / 466 = 0.06438 0.00126 ## MoveGap 0 0 0 / 279 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 307 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1156 = 0.00173 0.00020 ## InsertFragment 0 0 0 / 271 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 328 = 0.00000 0.00000 ## CrossOver 4 9 3 / 193 = 0.01554 0.00105 ## CrossAndInsert 7 0 0 / 253 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 292 = 0.00000 0.00000 # Closing gap before 152 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 89: best score out of 20: T0287.try7-al8 216.21129 cost/residue, 158 clashes 0.17864 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 167 90 / 530 = 0.16981 0.00416 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 120 = 0.02500 0.00129 ## OptSubtree 2 0 0 / 68 = 0.00000 0.00000 ## OptSegment 1 1 2 / 107 = 0.01869 0.00058 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 4 51 23 / 147 = 0.15646 0.00345 ## TweakPhiSegment 2 40 11 / 100 = 0.11000 0.00127 ## TweakPsiSubtree 1 104 71 / 327 = 0.21713 0.00317 ## TweakPsiSegment 1 63 37 / 162 = 0.22840 0.00161 ## TweakPsiPhiSubtree 47 98 55 / 362 = 0.15193 0.00405 ## TweakPsiPhiSegment 70 156 74 / 479 = 0.15449 0.00477 ## TweakHbondSubtree 3 46 19 / 251 = 0.07570 0.00249 ## TweakHbondSegment 4 166 95 / 583 = 0.16295 0.00469 ## TweakMultimer 120 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 71 41 / 153 = 0.26797 0.00140 ## OneRotamer 0 153 98 / 849 = 0.11543 0.00855 ## ClashingRotamer 0 0 0 / 64 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 111 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 283 = 0.00353 0.00004 ## CloseGap 0 23 15 / 497 = 0.03018 0.00251 ## HealGap 0 71 30 / 470 = 0.06383 0.00125 ## MoveGap 0 0 0 / 281 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 308 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1162 = 0.00172 0.00020 ## InsertFragment 0 0 0 / 275 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 333 = 0.00000 0.00000 ## CrossOver 4 9 3 / 202 = 0.01485 0.00100 ## CrossAndInsert 7 0 0 / 255 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 294 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 90: best score out of 20: T0287.try7-al8 216.13094 cost/residue, 164 clashes 0.17640 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 167 90 / 531 = 0.16949 0.00415 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 120 = 0.02500 0.00129 ## OptSubtree 2 0 0 / 68 = 0.00000 0.00000 ## OptSegment 1 1 2 / 107 = 0.01869 0.00058 ## OptAllSegments 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 4 56 24 / 155 = 0.15484 0.00379 ## TweakPhiSegment 2 40 11 / 100 = 0.11000 0.00127 ## TweakPsiSubtree 1 105 72 / 331 = 0.21752 0.00319 ## TweakPsiSegment 1 64 37 / 167 = 0.22156 0.00156 ## TweakPsiPhiSubtree 47 100 56 / 366 = 0.15301 0.00410 ## TweakPsiPhiSegment 70 157 74 / 485 = 0.15258 0.00471 ## TweakHbondSubtree 3 46 19 / 252 = 0.07540 0.00248 ## TweakHbondSegment 4 166 95 / 586 = 0.16212 0.00467 ## TweakMultimer 121 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 23 73 42 / 160 = 0.26250 0.00134 ## OneRotamer 0 153 98 / 857 = 0.11435 0.00847 ## ClashingRotamer 0 0 0 / 64 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 112 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 285 = 0.00351 0.00004 ## CloseGap 0 23 15 / 499 = 0.03006 0.00250 ## HealGap 0 71 30 / 477 = 0.06289 0.00123 ## MoveGap 0 0 0 / 286 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 311 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 59 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1174 = 0.00170 0.00020 ## InsertFragment 0 0 0 / 278 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 335 = 0.00000 0.00000 ## CrossOver 4 9 3 / 213 = 0.01408 0.00095 ## CrossAndInsert 7 0 0 / 257 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 295 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 23 next to short segment # Closing gap before 152 next to short segment # Closing gap before 36 next to short segment # generation 91: best score out of 20: T0287.try7-al8 216.12523 cost/residue, 164 clashes 0.17677 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 169 92 / 536 = 0.17164 0.00421 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 120 = 0.02500 0.00129 ## OptSubtree 2 0 0 / 68 = 0.00000 0.00000 ## OptSegment 1 1 2 / 107 = 0.01869 0.00058 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 4 58 24 / 162 = 0.14815 0.00363 ## TweakPhiSegment 2 40 11 / 100 = 0.11000 0.00127 ## TweakPsiSubtree 1 106 73 / 335 = 0.21791 0.00315 ## TweakPsiSegment 1 66 41 / 173 = 0.23699 0.00162 ## TweakPsiPhiSubtree 48 101 56 / 374 = 0.14973 0.00401 ## TweakPsiPhiSegment 70 159 74 / 492 = 0.15041 0.00464 ## TweakHbondSubtree 3 46 19 / 253 = 0.07510 0.00247 ## TweakHbondSegment 4 167 96 / 592 = 0.16216 0.00463 ## TweakMultimer 123 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 23 75 45 / 169 = 0.26627 0.00131 ## OneRotamer 0 154 98 / 866 = 0.11316 0.00838 ## ClashingRotamer 0 0 0 / 64 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 112 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 288 = 0.00347 0.00004 ## CloseGap 0 24 15 / 504 = 0.02976 0.00247 ## HealGap 0 71 30 / 480 = 0.06250 0.00122 ## MoveGap 0 0 0 / 289 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 313 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1181 = 0.00169 0.00020 ## InsertFragment 0 0 0 / 280 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 338 = 0.00000 0.00000 ## CrossOver 5 10 4 / 220 = 0.01818 0.00112 ## CrossAndInsert 7 0 0 / 257 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 296 = 0.00000 0.00000 # generation 92: best score out of 20: T0287.try7-al8 216.09023 cost/residue, 165 clashes 0.17695 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 171 94 / 540 = 0.17407 0.00419 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 123 = 0.02439 0.00126 ## OptSubtree 2 0 0 / 69 = 0.00000 0.00000 ## OptSegment 1 1 2 / 107 = 0.01869 0.00058 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 5 63 27 / 177 = 0.15254 0.00383 ## TweakPhiSegment 2 41 11 / 101 = 0.10891 0.00125 ## TweakPsiSubtree 1 107 73 / 338 = 0.21598 0.00312 ## TweakPsiSegment 1 66 41 / 177 = 0.23164 0.00158 ## TweakPsiPhiSubtree 48 103 58 / 381 = 0.15223 0.00408 ## TweakPsiPhiSegment 71 159 74 / 499 = 0.14830 0.00458 ## TweakHbondSubtree 3 46 19 / 253 = 0.07510 0.00247 ## TweakHbondSegment 4 167 96 / 597 = 0.16080 0.00459 ## TweakMultimer 124 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 25 77 46 / 172 = 0.26744 0.00129 ## OneRotamer 0 155 99 / 875 = 0.11314 0.00834 ## ClashingRotamer 0 0 0 / 65 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 114 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 289 = 0.00346 0.00004 ## CloseGap 0 24 15 / 507 = 0.02959 0.00246 ## HealGap 0 71 30 / 481 = 0.06237 0.00122 ## MoveGap 0 0 0 / 292 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 316 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1191 = 0.00168 0.00020 ## InsertFragment 0 0 0 / 280 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 339 = 0.00000 0.00000 ## CrossOver 5 10 4 / 229 = 0.01747 0.00108 ## CrossAndInsert 7 0 0 / 259 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 297 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 23 next to short segment # generation 93: best score out of 20: T0287.try7-al8 216.03398 cost/residue, 165 clashes 0.17614 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 171 94 / 546 = 0.17216 0.00415 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 123 = 0.02439 0.00126 ## OptSubtree 2 0 0 / 69 = 0.00000 0.00000 ## OptSegment 1 1 2 / 108 = 0.01852 0.00057 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 68 29 / 198 = 0.14646 0.00373 ## TweakPhiSegment 2 43 12 / 103 = 0.11650 0.00129 ## TweakPsiSubtree 1 107 74 / 340 = 0.21765 0.00311 ## TweakPsiSegment 1 66 41 / 178 = 0.23034 0.00158 ## TweakPsiPhiSubtree 48 105 58 / 385 = 0.15065 0.00404 ## TweakPsiPhiSegment 72 160 74 / 503 = 0.14712 0.00454 ## TweakHbondSubtree 3 47 19 / 259 = 0.07336 0.00241 ## TweakHbondSegment 4 169 98 / 601 = 0.16306 0.00457 ## TweakMultimer 125 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 25 77 46 / 172 = 0.26744 0.00129 ## OneRotamer 0 156 100 / 886 = 0.11287 0.00826 ## ClashingRotamer 0 0 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 114 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 290 = 0.00345 0.00003 ## CloseGap 0 24 15 / 510 = 0.02941 0.00244 ## HealGap 0 71 30 / 488 = 0.06148 0.00120 ## MoveGap 0 0 0 / 295 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 316 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1196 = 0.00167 0.00020 ## InsertFragment 0 0 0 / 281 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 343 = 0.00000 0.00000 ## CrossOver 6 10 4 / 239 = 0.01674 0.00103 ## CrossAndInsert 7 0 0 / 260 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 299 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 94: best score out of 20: T0287.try7-al8 216.02141 cost/residue, 165 clashes 0.17614 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 174 96 / 556 = 0.17266 0.00410 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 125 = 0.02400 0.00124 ## OptSubtree 2 0 0 / 70 = 0.00000 0.00000 ## OptSegment 1 1 2 / 108 = 0.01852 0.00057 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 69 29 / 207 = 0.14010 0.00357 ## TweakPhiSegment 2 45 12 / 106 = 0.11321 0.00125 ## TweakPsiSubtree 1 107 74 / 343 = 0.21574 0.00308 ## TweakPsiSegment 1 70 42 / 185 = 0.22703 0.00152 ## TweakPsiPhiSubtree 49 106 59 / 394 = 0.14975 0.00396 ## TweakPsiPhiSegment 72 161 74 / 509 = 0.14538 0.00449 ## TweakHbondSubtree 3 47 19 / 264 = 0.07197 0.00237 ## TweakHbondSegment 4 169 98 / 602 = 0.16279 0.00457 ## TweakMultimer 129 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 28 78 47 / 175 = 0.26857 0.00127 ## OneRotamer 0 157 100 / 895 = 0.11173 0.00818 ## ClashingRotamer 0 0 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 114 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 292 = 0.00342 0.00003 ## CloseGap 0 24 15 / 517 = 0.02901 0.00241 ## HealGap 0 71 30 / 489 = 0.06135 0.00120 ## MoveGap 0 0 0 / 297 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 318 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1201 = 0.00167 0.00020 ## InsertFragment 0 0 0 / 282 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 345 = 0.00000 0.00000 ## CrossOver 6 10 4 / 243 = 0.01646 0.00101 ## CrossAndInsert 7 0 0 / 262 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 303 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 95: best score out of 20: T0287.try7-al8 216.00792 cost/residue, 165 clashes 0.17620 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 176 97 / 558 = 0.17384 0.00409 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 126 = 0.02381 0.00123 ## OptSubtree 2 0 0 / 71 = 0.00000 0.00000 ## OptSegment 1 1 2 / 108 = 0.01852 0.00057 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 71 30 / 217 = 0.13825 0.00345 ## TweakPhiSegment 2 47 12 / 109 = 0.11009 0.00122 ## TweakPsiSubtree 1 109 77 / 347 = 0.22190 0.00310 ## TweakPsiSegment 1 70 42 / 187 = 0.22460 0.00151 ## TweakPsiPhiSubtree 51 107 59 / 403 = 0.14640 0.00388 ## TweakPsiPhiSegment 74 164 75 / 516 = 0.14535 0.00446 ## TweakHbondSubtree 3 47 19 / 266 = 0.07143 0.00235 ## TweakHbondSegment 4 169 98 / 605 = 0.16198 0.00454 ## TweakMultimer 130 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 28 80 49 / 179 = 0.27374 0.00127 ## OneRotamer 0 158 100 / 907 = 0.11025 0.00807 ## ClashingRotamer 0 0 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 114 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 297 = 0.00337 0.00003 ## CloseGap 0 24 15 / 522 = 0.02874 0.00239 ## HealGap 0 71 30 / 493 = 0.06085 0.00119 ## MoveGap 0 0 0 / 298 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 319 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1212 = 0.00165 0.00019 ## InsertFragment 0 0 0 / 284 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 347 = 0.00000 0.00000 ## CrossOver 6 10 4 / 248 = 0.01613 0.00099 ## CrossAndInsert 7 0 0 / 262 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 306 = 0.00000 0.00000 # Closing gap before 182 next to short segment # generation 96: best score out of 20: T0287.try7-al8 215.98560 cost/residue, 164 clashes 0.17567 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 176 97 / 561 = 0.17291 0.00407 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 128 = 0.02344 0.00121 ## OptSubtree 2 0 0 / 71 = 0.00000 0.00000 ## OptSegment 1 1 2 / 109 = 0.01835 0.00057 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 73 30 / 229 = 0.13100 0.00327 ## TweakPhiSegment 2 47 12 / 109 = 0.11009 0.00122 ## TweakPsiSubtree 1 109 77 / 350 = 0.22000 0.00308 ## TweakPsiSegment 1 71 44 / 191 = 0.23037 0.00149 ## TweakPsiPhiSubtree 52 107 59 / 409 = 0.14425 0.00382 ## TweakPsiPhiSegment 75 165 75 / 523 = 0.14340 0.00440 ## TweakHbondSubtree 3 47 19 / 266 = 0.07143 0.00235 ## TweakHbondSegment 4 173 101 / 614 = 0.16450 0.00455 ## TweakMultimer 133 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 28 83 51 / 185 = 0.27568 0.00125 ## OneRotamer 0 160 103 / 923 = 0.11159 0.00796 ## ClashingRotamer 0 0 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 114 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 298 = 0.00336 0.00003 ## CloseGap 0 24 15 / 525 = 0.02857 0.00237 ## HealGap 0 71 30 / 499 = 0.06012 0.00118 ## MoveGap 0 0 0 / 299 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 320 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1216 = 0.00164 0.00019 ## InsertFragment 0 0 0 / 284 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 349 = 0.00000 0.00000 ## CrossOver 6 10 4 / 255 = 0.01569 0.00097 ## CrossAndInsert 7 0 0 / 265 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 309 = 0.00000 0.00000 # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # Closing gap before 36 next to short segment # generation 97: best score out of 20: T0287.try7-al8 215.96481 cost/residue, 168 clashes 0.17681 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 178 99 / 567 = 0.17460 0.00403 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 130 = 0.02308 0.00119 ## OptSubtree 2 0 0 / 72 = 0.00000 0.00000 ## OptSegment 1 1 2 / 110 = 0.01818 0.00056 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 74 30 / 244 = 0.12295 0.00307 ## TweakPhiSegment 2 47 12 / 110 = 0.10909 0.00121 ## TweakPsiSubtree 1 110 78 / 355 = 0.21972 0.00306 ## TweakPsiSegment 1 73 45 / 193 = 0.23316 0.00148 ## TweakPsiPhiSubtree 52 107 59 / 413 = 0.14286 0.00378 ## TweakPsiPhiSegment 75 165 75 / 532 = 0.14098 0.00432 ## TweakHbondSubtree 3 47 19 / 267 = 0.07116 0.00234 ## TweakHbondSegment 4 175 102 / 623 = 0.16372 0.00457 ## TweakMultimer 136 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 30 85 53 / 189 = 0.28042 0.00124 ## OneRotamer 0 163 105 / 931 = 0.11278 0.00793 ## ClashingRotamer 0 0 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 114 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 301 = 0.00332 0.00003 ## CloseGap 0 24 15 / 532 = 0.02820 0.00234 ## HealGap 0 72 31 / 502 = 0.06175 0.00121 ## MoveGap 0 0 0 / 304 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 322 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1217 = 0.00164 0.00019 ## InsertFragment 0 0 0 / 286 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 350 = 0.00000 0.00000 ## CrossOver 6 10 4 / 259 = 0.01544 0.00095 ## CrossAndInsert 7 0 0 / 266 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 312 = 0.00000 0.00000 # generation 98: best score out of 20: T0287.try7-al8 215.95753 cost/residue, 168 clashes 0.17681 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 179 99 / 575 = 0.17217 0.00397 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 131 = 0.02290 0.00118 ## OptSubtree 2 0 0 / 72 = 0.00000 0.00000 ## OptSegment 1 1 2 / 110 = 0.01818 0.00056 ## OptAllSegments 0 0 0 / 26 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 79 30 / 257 = 0.11673 0.00291 ## TweakPhiSegment 2 47 12 / 110 = 0.10909 0.00121 ## TweakPsiSubtree 1 110 78 / 360 = 0.21667 0.00301 ## TweakPsiSegment 1 75 46 / 198 = 0.23232 0.00145 ## TweakPsiPhiSubtree 53 108 59 / 415 = 0.14217 0.00376 ## TweakPsiPhiSegment 76 166 76 / 539 = 0.14100 0.00428 ## TweakHbondSubtree 3 47 19 / 268 = 0.07090 0.00233 ## TweakHbondSegment 4 175 102 / 629 = 0.16216 0.00453 ## TweakMultimer 137 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 31 87 55 / 191 = 0.28796 0.00130 ## OneRotamer 0 165 106 / 947 = 0.11193 0.00781 ## ClashingRotamer 0 0 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 114 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 301 = 0.00332 0.00003 ## CloseGap 0 24 15 / 534 = 0.02809 0.00233 ## HealGap 0 72 31 / 504 = 0.06151 0.00121 ## MoveGap 0 0 0 / 308 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 324 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1225 = 0.00163 0.00019 ## InsertFragment 0 0 0 / 288 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 352 = 0.00000 0.00000 ## CrossOver 6 10 4 / 263 = 0.01521 0.00094 ## CrossAndInsert 8 0 0 / 269 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 316 = 0.00000 0.00000 # Closing gap before 118 next to short segment # generation 99: best score out of 20: T0287.try7-al8 215.90044 cost/residue, 164 clashes 0.17577 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 180 99 / 580 = 0.17069 0.00394 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 132 = 0.02273 0.00117 ## OptSubtree 2 0 0 / 72 = 0.00000 0.00000 ## OptSegment 1 1 2 / 110 = 0.01818 0.00056 ## OptAllSegments 0 0 0 / 27 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 80 31 / 262 = 0.11832 0.00286 ## TweakPhiSegment 2 47 12 / 111 = 0.10811 0.00120 ## TweakPsiSubtree 1 113 80 / 365 = 0.21918 0.00300 ## TweakPsiSegment 1 78 50 / 203 = 0.24631 0.00152 ## TweakPsiPhiSubtree 54 110 61 / 424 = 0.14387 0.00379 ## TweakPsiPhiSegment 76 168 78 / 547 = 0.14260 0.00440 ## TweakHbondSubtree 3 47 19 / 271 = 0.07011 0.00230 ## TweakHbondSegment 4 176 104 / 637 = 0.16327 0.00453 ## TweakMultimer 141 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 31 90 57 / 196 = 0.29082 0.00128 ## OneRotamer 0 165 106 / 956 = 0.11088 0.00774 ## ClashingRotamer 0 0 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 116 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 302 = 0.00331 0.00003 ## CloseGap 0 24 15 / 535 = 0.02804 0.00233 ## HealGap 0 72 31 / 509 = 0.06090 0.00119 ## MoveGap 0 0 0 / 311 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 325 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1233 = 0.00162 0.00019 ## InsertFragment 0 0 0 / 290 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 354 = 0.00000 0.00000 ## CrossOver 6 10 4 / 268 = 0.01493 0.00092 ## CrossAndInsert 8 0 0 / 272 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 318 = 0.00000 0.00000 # Closing gap before 36 next to short segment # generation 100: best score out of 20: T0287.try7-al8 215.90044 cost/residue, 164 clashes 0.17577 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 182 100 / 588 = 0.17007 0.00389 ## JiggleSubtree 0 1 0 / 13 = 0.00000 0.00000 ## JiggleSegment 5 7 3 / 132 = 0.02273 0.00117 ## OptSubtree 2 0 0 / 72 = 0.00000 0.00000 ## OptSegment 1 1 2 / 110 = 0.01818 0.00056 ## OptAllSegments 0 0 0 / 28 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 1 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 80 31 / 268 = 0.11567 0.00279 ## TweakPhiSegment 2 47 12 / 111 = 0.10811 0.00120 ## TweakPsiSubtree 1 114 80 / 371 = 0.21563 0.00295 ## TweakPsiSegment 1 82 52 / 211 = 0.24645 0.00153 ## TweakPsiPhiSubtree 56 111 61 / 429 = 0.14219 0.00375 ## TweakPsiPhiSegment 76 169 79 / 551 = 0.14338 0.00440 ## TweakHbondSubtree 3 47 19 / 271 = 0.07011 0.00230 ## TweakHbondSegment 4 178 105 / 644 = 0.16304 0.00452 ## TweakMultimer 145 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 32 92 59 / 202 = 0.29208 0.00130 ## OneRotamer 0 166 106 / 965 = 0.10984 0.00767 ## ClashingRotamer 0 0 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 3 2 0 / 116 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 305 = 0.00328 0.00003 ## CloseGap 0 24 15 / 538 = 0.02788 0.00232 ## HealGap 0 72 31 / 518 = 0.05985 0.00117 ## MoveGap 0 0 0 / 312 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 326 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 1249 = 0.00160 0.00019 ## InsertFragment 0 0 0 / 291 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 354 = 0.00000 0.00000 ## CrossOver 6 10 4 / 271 = 0.01476 0.00091 ## CrossAndInsert 8 0 0 / 274 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 319 = 0.00000 0.00000 # command:# naming current conformation T0287.try7-opt1 # command: